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Homologs of cmlA9 gene of AY963803

protein-level

Hit (GenBank Accn)

Product

Source Genome

Eval.

Ident.(%)

1) ABAYE3640
( YP_001715371.1 )

chloramphenicol and florfenicol resistance protein (CmlA)

NC_010410
(Acinetobacter baumannii AYE)

5e-173

100

2) KPHS_p300660
( YP_005221014.1 )

putative chloramphenicol and florfenicol resistance protein (CmlA)

NC_016839
(Klebsiella pneumoniae HS11286)

5e-173

100

3) N559_5247
( YP_008415028.1 )

chloramphenicol and florfenicol resistance protein (CmlA)

NC_022078
(Klebsiella pneumoniae JM45)

5e-173

100

4) floR
( YP_006142007.1 )

florfenicol/chloramphenicol resistance protein FloR

NC_017645
(Escherichia coli UMNK88)

3e-149

5) floR
( YP_001101919.1 )

florfenicol/chloramphenicol resistance protein FloR

NC_009140
(Salmonella enterica SL254)

3e-149

6) floR
( YP_005176183.1 )

florfenicol / chloramphenicol efflux protein

NC_016808
(Pasteurella multocida 36950)

6e-149

7) WQG_1010
( YP_007547178.1 )

Florfenicol export protein

NC_020515
(Bibersteinia trehalosi USDA-ARS-USMARC-192)

1e-148

8) RSPPHO_00751
( YP_005416347.1 )

Drug resistance transporter, Bcr

NC_017059
(Rhodospirillum photometricum DSM 122)

5e-114

9) RC1_2952
( YP_002299132.1 )

drug resistance transporter Bcr

NC_011420
(Rhodospirillum centenum SW)

2e-108

10) cmlA
( YP_006841357.1 )

chloramphenicol resistance protein

NC_018700
(Sinorhizobium meliloti Rm41)

2e-107

11) SinmeB_2459
( YP_005714599.1 )

Bcr/CflA family multidrug resistance transporter

NC_017322
(Sinorhizobium meliloti BL225C)

5e-107

12) SM11_chr2788
( YP_005721296.1 )

probabable export protein

NC_017325
(Sinorhizobium meliloti SM11)

5e-107

13) C770_GR4Chr2739
( YP_007191247.1 )

drug resistance transporter, Bcr/CflA subfamily

NC_019845
(Sinorhizobium meliloti GR4)

2e-106

14) SMc00744
( NP_386734.1 )

transporter

NC_003047
(Sinorhizobium meliloti 1021)

3e-106

15) SM2011_c00744
( YP_007575905.1 )

MFS-type transport protein

NC_020528
(Sinorhizobium meliloti 2011)

3e-106

16) MXAN_2566
( YP_630785.1 )

Bcr/CflA family protein drug resistance transporter

NC_008095
(Myxococcus xanthus DK 1622)

8e-101

17) Meso_3944
( YP_676476.1 )

Bcr/CflA subfamily drug resistance transporter

NC_008254
(Chelativorans sp. BNC1)

1e-100

18) RTCIAT899_PC04380
( YP_007337219.1 )

putative major facilitator superfamily (MFS) drug efflux transporter

NC_020062
(Rhizobium tropici CIAT 899)

4e-100

19) Smed_2519
( YP_001328184.1 )

Bcr/CflA subfamily drug resistance transporter

NC_009636
(Sinorhizobium medicae WSM419)

1e-99

20) Mesci_3448
( YP_004142621.1 )

Bcr/CflA subfamily drug resistance transporter

NC_014923
(Mesorhizobium ciceri WSM1271)

2e-97

21) RL1670
( YP_767274.1 )

transmembrane efflux protein

NC_008380
(Rhizobium leguminosarum 3841)

5e-95

22) Rleg2_1232
( YP_002280752.1 )

Bcr/CflA subfamily drug resistance transporter

NC_011369
(Rhizobium leguminosarum WSM2304)

1e-94

23) floR
( YP_469098.1 )

florfenicol/chloramphenicol resistance transporter

NC_007761
(Rhizobium etli CFN 42)

8e-94

24) LILAB_20505
( YP_004667079.1 )

Bcr/CflA family protein drug resistance transporter

NC_015711
(Myxococcus fulvus HW-1)

4e-93

25) REMIM1_CH01583
( YP_008364342.1 )

Bcr/CflA subfamily drug resistance transporter protein

NC_021905
(Rhizobium etli Mim1)

7e-89

26) cmlA
( YP_005368258.1 )

Bcr/CflA family protein drug resistance transporter

NC_017030
(Corallococcus coralloides DSM 2259)

2e-87

27) Rleg_1320
( YP_002975151.1 )

Bcr/CflA subfamily drug resistance transporter

NC_012850
(Rhizobium leguminosarum WSM1325)

1e-84

28) XNC1_4570
( YP_003714652.1 )

chloramphenicol resistance protein

NC_014228
(Xenorhabdus nematophila ATCC 19061)

3e-84

29) Smal_3550
( YP_002029932.1 )

Bcr/CflA subfamily drug resistance transporter

NC_011071
(Stenotrophomonas maltophilia R551-3)

5e-83

30) SCE1572_04945
( YP_008147446.1 )

hypothetical protein

NC_021658
(Sorangium cellulosum So0157-2)

1e-80

31) cmlA
( YP_001715359.1 )

chloramphenicol resistance protein

NC_010410
(Acinetobacter baumannii AYE)

1e-62

32) cmlA1
( YP_006142101.1 )

chloramphenicol resistance protein CmlA1

NC_017645
(Escherichia coli UMNK88)

1e-62

33) B479_26979
( YP_007232188.1 )

hypothetical protein

NC_019906
(Pseudomonas putida PC9)

1e-62

34) cmlA1
( YP_001338812.1 )

chloramphenicol resistance protein

NC_009651
(Klebsiella pneumoniae subsp. pneumoniae MGH 78578)

3e-62

35) SeSA_B0064
( YP_002112943.1 )

chloramphenicol resistance protein

NC_011092
(Salmonella enterica CVM19633)

4e-62

36) cmlA
( YP_209357.1 )

chloramphenicol resistance protein

NC_006856
(Salmonella enterica SC-B67)

4e-62

37) STU288_1p00745
( YP_007905883.1 )

chloramphenicol efflux protein CmlA

NC_021155
(Salmonella enterica U288)

4e-62

38) Shewana3_2204
( YP_869839.1 )

Bcr/CflA subfamily drug resistance transporter

NC_008577
(Shewanella sp. ANA-3)

5e-60

39) BJAB0715_p0013
( YP_008219009.1 )

Permeases of the major facilitator superfamily

NC_021734
(Acinetobacter baumannii BJAB0715)

1e-53

• Sequence Alignments

1) ABAYE3640 in NC_010410


> AY963803|10|G7|166865478|ABZ01840.1|Salmonella_enterica_subsp._enterica_SRC19|+|8118..9332|cmlA9|-|CmlA9 
chloramphenicol 
efflux protein
Length=404

 Score =  600 bits (2265),  Expect = 5e-173, Method: Compositional matrix adjust.
 Identities = 404/404 (100%), Positives = 404/404 (100%), Gaps = 0/404 (0%)

Query  1    MTTTRPAWAYTLPAALLLMAPFDILASLAMDIYLPVVPAMPGVLNTTPSIIQLTLSLYMV  60
            MTTTRPAWAYTLPAALLLMAPFDILASLAMDIYLPVVPAMPGVLNTTPSIIQLTLSLYMV
Sbjct  1    MTTTRPAWAYTLPAALLLMAPFDILASLAMDIYLPVVPAMPGVLNTTPSIIQLTLSLYMV  60

Query  61   MLGVGQVIFGPLSDRVGRRPILLVGATAFVAASLGAACSSTALAFVAFRLVQAVGASAML  120
            MLGVGQVIFGPLSDRVGRRPILLVGATAFVAASLGAACSSTALAFVAFRLVQAVGASAML
Sbjct  61   MLGVGQVIFGPLSDRVGRRPILLVGATAFVAASLGAACSSTALAFVAFRLVQAVGASAML  120

Query  121  VATFATVRDVYANRPEGAVIYGLFSSMLAFVPALGPIAGALIGEFWGWQAIFITlaalas  180
            VATFATVRDVYANRPEGAVIYGLFSSMLAFVPALGPIAGALIGEFWGWQAIFITLAALAS
Sbjct  121  VATFATVRDVYANRPEGAVIYGLFSSMLAFVPALGPIAGALIGEFWGWQAIFITLAALAS  180

Query  181  lallnasFRWHETRPLDQARTQRSVLPIFASPAFWVYTVGFSAGMGTFFVFFSTAPRVLI  240
            LALLNASFRWHETRPLDQARTQRSVLPIFASPAFWVYTVGFSAGMGTFFVFFSTAPRVLI
Sbjct  181  LALLNASFRWHETRPLDQARTQRSVLPIFASPAFWVYTVGFSAGMGTFFVFFSTAPRVLI  240

Query  241  GQAGYSEIGFSLAFATVALVMVTTTRFAKSFVAKWGIAGCVARGMALLVSGAILLGIGQL  300
            GQAGYSEIGFSLAFATVALVMVTTTRFAKSFVAKWGIAGCVARGMALLVSGAILLGIGQL
Sbjct  241  GQAGYSEIGFSLAFATVALVMVTTTRFAKSFVAKWGIAGCVARGMALLVSGAILLGIGQL  300

Query  301  FGSPSFFSFILPMWVVAVGIVFTVSVTANGALAQFDDIAGSAVAFYFCIQSLIVSIVGTL  360
            FGSPSFFSFILPMWVVAVGIVFTVSVTANGALAQFDDIAGSAVAFYFCIQSLIVSIVGTL
Sbjct  301  FGSPSFFSFILPMWVVAVGIVFTVSVTANGALAQFDDIAGSAVAFYFCIQSLIVSIVGTL  360

Query  361  AVTLLNGDTAWPVICYATAMAVLVSLGLALLRSRDAATEKSPVV  404
            AVTLLNGDTAWPVICYATAMAVLVSLGLALLRSRDAATEKSPVV
Sbjct  361  AVTLLNGDTAWPVICYATAMAVLVSLGLALLRSRDAATEKSPVV  404

2) KPHS_p300660 in NC_016839


> AY963803|10|G7|166865478|ABZ01840.1|Salmonella_enterica_subsp._enterica_SRC19|+|8118..9332|cmlA9|-|CmlA9 
chloramphenicol 
efflux protein
Length=404

 Score =  600 bits (2265),  Expect = 5e-173, Method: Compositional matrix adjust.
 Identities = 404/404 (100%), Positives = 404/404 (100%), Gaps = 0/404 (0%)

Query  1    MTTTRPAWAYTLPAALLLMAPFDILASLAMDIYLPVVPAMPGVLNTTPSIIQLTLSLYMV  60
            MTTTRPAWAYTLPAALLLMAPFDILASLAMDIYLPVVPAMPGVLNTTPSIIQLTLSLYMV
Sbjct  1    MTTTRPAWAYTLPAALLLMAPFDILASLAMDIYLPVVPAMPGVLNTTPSIIQLTLSLYMV  60

Query  61   MLGVGQVIFGPLSDRVGRRPILLVGATAFVAASLGAACSSTALAFVAFRLVQAVGASAML  120
            MLGVGQVIFGPLSDRVGRRPILLVGATAFVAASLGAACSSTALAFVAFRLVQAVGASAML
Sbjct  61   MLGVGQVIFGPLSDRVGRRPILLVGATAFVAASLGAACSSTALAFVAFRLVQAVGASAML  120

Query  121  VATFATVRDVYANRPEGAVIYGLFSSMLAFVPALGPIAGALIGEFWGWQAIFITlaalas  180
            VATFATVRDVYANRPEGAVIYGLFSSMLAFVPALGPIAGALIGEFWGWQAIFITLAALAS
Sbjct  121  VATFATVRDVYANRPEGAVIYGLFSSMLAFVPALGPIAGALIGEFWGWQAIFITLAALAS  180

Query  181  lallnasFRWHETRPLDQARTQRSVLPIFASPAFWVYTVGFSAGMGTFFVFFSTAPRVLI  240
            LALLNASFRWHETRPLDQARTQRSVLPIFASPAFWVYTVGFSAGMGTFFVFFSTAPRVLI
Sbjct  181  LALLNASFRWHETRPLDQARTQRSVLPIFASPAFWVYTVGFSAGMGTFFVFFSTAPRVLI  240

Query  241  GQAGYSEIGFSLAFATVALVMVTTTRFAKSFVAKWGIAGCVARGMALLVSGAILLGIGQL  300
            GQAGYSEIGFSLAFATVALVMVTTTRFAKSFVAKWGIAGCVARGMALLVSGAILLGIGQL
Sbjct  241  GQAGYSEIGFSLAFATVALVMVTTTRFAKSFVAKWGIAGCVARGMALLVSGAILLGIGQL  300

Query  301  FGSPSFFSFILPMWVVAVGIVFTVSVTANGALAQFDDIAGSAVAFYFCIQSLIVSIVGTL  360
            FGSPSFFSFILPMWVVAVGIVFTVSVTANGALAQFDDIAGSAVAFYFCIQSLIVSIVGTL
Sbjct  301  FGSPSFFSFILPMWVVAVGIVFTVSVTANGALAQFDDIAGSAVAFYFCIQSLIVSIVGTL  360

Query  361  AVTLLNGDTAWPVICYATAMAVLVSLGLALLRSRDAATEKSPVV  404
            AVTLLNGDTAWPVICYATAMAVLVSLGLALLRSRDAATEKSPVV
Sbjct  361  AVTLLNGDTAWPVICYATAMAVLVSLGLALLRSRDAATEKSPVV  404

3) N559_5247 in NC_022078


> AY963803|10|G7|166865478|ABZ01840.1|Salmonella_enterica_subsp._enterica_SRC19|+|8118..9332|cmlA9|-|CmlA9 
chloramphenicol 
efflux protein
Length=404

 Score =  600 bits (2265),  Expect = 5e-173, Method: Compositional matrix adjust.
 Identities = 404/404 (100%), Positives = 404/404 (100%), Gaps = 0/404 (0%)

Query  1    MTTTRPAWAYTLPAALLLMAPFDILASLAMDIYLPVVPAMPGVLNTTPSIIQLTLSLYMV  60
            MTTTRPAWAYTLPAALLLMAPFDILASLAMDIYLPVVPAMPGVLNTTPSIIQLTLSLYMV
Sbjct  1    MTTTRPAWAYTLPAALLLMAPFDILASLAMDIYLPVVPAMPGVLNTTPSIIQLTLSLYMV  60

Query  61   MLGVGQVIFGPLSDRVGRRPILLVGATAFVAASLGAACSSTALAFVAFRLVQAVGASAML  120
            MLGVGQVIFGPLSDRVGRRPILLVGATAFVAASLGAACSSTALAFVAFRLVQAVGASAML
Sbjct  61   MLGVGQVIFGPLSDRVGRRPILLVGATAFVAASLGAACSSTALAFVAFRLVQAVGASAML  120

Query  121  VATFATVRDVYANRPEGAVIYGLFSSMLAFVPALGPIAGALIGEFWGWQAIFITlaalas  180
            VATFATVRDVYANRPEGAVIYGLFSSMLAFVPALGPIAGALIGEFWGWQAIFITLAALAS
Sbjct  121  VATFATVRDVYANRPEGAVIYGLFSSMLAFVPALGPIAGALIGEFWGWQAIFITLAALAS  180

Query  181  lallnasFRWHETRPLDQARTQRSVLPIFASPAFWVYTVGFSAGMGTFFVFFSTAPRVLI  240
            LALLNASFRWHETRPLDQARTQRSVLPIFASPAFWVYTVGFSAGMGTFFVFFSTAPRVLI
Sbjct  181  LALLNASFRWHETRPLDQARTQRSVLPIFASPAFWVYTVGFSAGMGTFFVFFSTAPRVLI  240

Query  241  GQAGYSEIGFSLAFATVALVMVTTTRFAKSFVAKWGIAGCVARGMALLVSGAILLGIGQL  300
            GQAGYSEIGFSLAFATVALVMVTTTRFAKSFVAKWGIAGCVARGMALLVSGAILLGIGQL
Sbjct  241  GQAGYSEIGFSLAFATVALVMVTTTRFAKSFVAKWGIAGCVARGMALLVSGAILLGIGQL  300

Query  301  FGSPSFFSFILPMWVVAVGIVFTVSVTANGALAQFDDIAGSAVAFYFCIQSLIVSIVGTL  360
            FGSPSFFSFILPMWVVAVGIVFTVSVTANGALAQFDDIAGSAVAFYFCIQSLIVSIVGTL
Sbjct  301  FGSPSFFSFILPMWVVAVGIVFTVSVTANGALAQFDDIAGSAVAFYFCIQSLIVSIVGTL  360

Query  361  AVTLLNGDTAWPVICYATAMAVLVSLGLALLRSRDAATEKSPVV  404
            AVTLLNGDTAWPVICYATAMAVLVSLGLALLRSRDAATEKSPVV
Sbjct  361  AVTLLNGDTAWPVICYATAMAVLVSLGLALLRSRDAATEKSPVV  404

4) VCD_003740 in NC_012668


> AY963803|10|G7|166865478|ABZ01840.1|Salmonella_enterica_subsp._enterica_SRC19|+|8118..9332|cmlA9|-|CmlA9 
chloramphenicol 
efflux protein
Length=404

 Score =  522 bits (1971),  Expect = 9e-150, Method: Compositional matrix adjust.
 Identities = 370/404 (92%), Positives = 390/404 (97%), Gaps = 0/404 (0%)

Query  1    MTTTRPAWAYTLPAALLLMAPFDILASLAMDIYLPVVPAMPGILNTTPAMIQLTLSLYMV  60
            MTTTRPAWAYTLPAALLLMAPFDILASLAMDIYLPVVPAMPG+LNTTP++IQLTLSLYMV
Sbjct  1    MTTTRPAWAYTLPAALLLMAPFDILASLAMDIYLPVVPAMPGVLNTTPSIIQLTLSLYMV  60

Query  61   MLGVGQVIFGPLSDRIGRRPILLAGATAFVIASLGAAWSSTAPAFVAFRLLQAVGASAML  120
            MLGVGQVIFGPLSDR+GRRPILL GATAFV ASLGAA SSTA AFVAFRL+QAVGASAML
Sbjct  61   MLGVGQVIFGPLSDRVGRRPILLVGATAFVAASLGAACSSTALAFVAFRLVQAVGASAML  120

Query  121  VATFATVRDVYANRPEGVVIYGLFSSMLAFVPALGPIAGALIGEFLGWQaifitlailam  180
            VATFATVRDVYANRPEG VIYGLFSSMLAFVPALGPIAGALIGEF GWQAIFITLA LA 
Sbjct  121  VATFATVRDVYANRPEGAVIYGLFSSMLAFVPALGPIAGALIGEFWGWQAIFITLAALAS  180

Query  181  lallnaGFRWHETRPLDQVKTRRSVLPIFASPAFWVYTVGFSAGMGTFFVFFSTAPRVLI  240
            LALLNA+FRWHETRPLDQ +T+RSVLPIFASPAFWVYTVGFSAGMGTFFVFFSTAPRVLI
Sbjct  181  LALLNASFRWHETRPLDQARTQRSVLPIFASPAFWVYTVGFSAGMGTFFVFFSTAPRVLI  240

Query  241  GQAEYSEIGFSFAFATVALVMIVTTRFAKSFVARWGIAGCVARGMALLVCGAVLLGIGEL  300
            GQA YSEIGFS+AFATVALVM+ TTRFAKSFVA+WGIAGCVARGMALLV GA+LLGIG+L
Sbjct  241  GQAGYSEIGFSLAFATVALVMVTTTRFAKSFVAKWGIAGCVARGMALLVSGAILLGIGQL  300

Query  301  YGSPSFLTFILPMWVVAVGIVFTVSVTANGALAEFDDIAGSAVAFYFCVQSLIVSIVGTL  360
            +GSPSF++FILPMWVVAVGIVFTVSVTANGALA+FDDIAGSAVAFYFC+QSLIVSIVGTL
Sbjct  301  FGSPSFFSFILPMWVVAVGIVFTVSVTANGALAQFDDIAGSAVAFYFCIQSLIVSIVGTL  360

Query  361  AVALLNGDTAWPVICYATAMavlvslglvllrlrgaaTEKSPVV  404
            AV+LLNGDTAWPVICYATAMAVLVSLGL LLR R+AATEKSPVV
Sbjct  361  AVTLLNGDTAWPVICYATAMAVLVSLGLALLRSRDAATEKSPVV  404

5) floR in NC_016445


> AY963803|10|G7|166865478|ABZ01840.1|Salmonella_enterica_subsp._enterica_SRC19|+|8118..9332|cmlA9|-|CmlA9 
chloramphenicol 
efflux protein
Length=404

 Score =  522 bits (1971),  Expect = 9e-150, Method: Compositional matrix adjust.
 Identities = 370/404 (92%), Positives = 390/404 (97%), Gaps = 0/404 (0%)

Query  1    MTTTRPAWAYTLPAALLLMAPFDILASLAMDIYLPVVPAMPGILNTTPAMIQLTLSLYMV  60
            MTTTRPAWAYTLPAALLLMAPFDILASLAMDIYLPVVPAMPG+LNTTP++IQLTLSLYMV
Sbjct  1    MTTTRPAWAYTLPAALLLMAPFDILASLAMDIYLPVVPAMPGVLNTTPSIIQLTLSLYMV  60

Query  61   MLGVGQVIFGPLSDRIGRRPILLAGATAFVIASLGAAWSSTAPAFVAFRLLQAVGASAML  120
            MLGVGQVIFGPLSDR+GRRPILL GATAFV ASLGAA SSTA AFVAFRL+QAVGASAML
Sbjct  61   MLGVGQVIFGPLSDRVGRRPILLVGATAFVAASLGAACSSTALAFVAFRLVQAVGASAML  120

Query  121  VATFATVRDVYANRPEGVVIYGLFSSMLAFVPALGPIAGALIGEFLGWQaifitlailam  180
            VATFATVRDVYANRPEG VIYGLFSSMLAFVPALGPIAGALIGEF GWQAIFITLA LA 
Sbjct  121  VATFATVRDVYANRPEGAVIYGLFSSMLAFVPALGPIAGALIGEFWGWQAIFITLAALAS  180

Query  181  lallnaGFRWHETRPLDQVKTRRSVLPIFASPAFWVYTVGFSAGMGTFFVFFSTAPRVLI  240
            LALLNA+FRWHETRPLDQ +T+RSVLPIFASPAFWVYTVGFSAGMGTFFVFFSTAPRVLI
Sbjct  181  LALLNASFRWHETRPLDQARTQRSVLPIFASPAFWVYTVGFSAGMGTFFVFFSTAPRVLI  240

Query  241  GQAEYSEIGFSFAFATVALVMIVTTRFAKSFVARWGIAGCVARGMALLVCGAVLLGIGEL  300
            GQA YSEIGFS+AFATVALVM+ TTRFAKSFVA+WGIAGCVARGMALLV GA+LLGIG+L
Sbjct  241  GQAGYSEIGFSLAFATVALVMVTTTRFAKSFVAKWGIAGCVARGMALLVSGAILLGIGQL  300

Query  301  YGSPSFLTFILPMWVVAVGIVFTVSVTANGALAEFDDIAGSAVAFYFCVQSLIVSIVGTL  360
            +GSPSF++FILPMWVVAVGIVFTVSVTANGALA+FDDIAGSAVAFYFC+QSLIVSIVGTL
Sbjct  301  FGSPSFFSFILPMWVVAVGIVFTVSVTANGALAQFDDIAGSAVAFYFCIQSLIVSIVGTL  360

Query  361  AVALLNGDTAWPVICYATAMavlvslglvllrlrgaaTEKSPVV  404
            AV+LLNGDTAWPVICYATAMAVLVSLGL LLR R+AATEKSPVV
Sbjct  361  AVTLLNGDTAWPVICYATAMAVLVSLGLALLRSRDAATEKSPVV  404

6) floR in NC_017645


> AY963803|10|G7|166865478|ABZ01840.1|Salmonella_enterica_subsp._enterica_SRC19|+|8118..9332|cmlA9|-|CmlA9 
chloramphenicol 
efflux protein
Length=404

 Score =  521 bits (1964),  Expect = 3e-149, Method: Compositional matrix adjust.
 Identities = 369/404 (92%), Positives = 390/404 (97%), Gaps = 0/404 (0%)

Query  1    MTTTRPAWAYTLPAALLLMAPFDILASLAMDIYLPVVPAMPGILNTTPAMIQLTLSLYMV  60
            MTTTRPAWAYTLPAALLLMAPFDILASLAMDIYLPVVPAMPG+LNTTP++IQLTLSLYMV
Sbjct  1    MTTTRPAWAYTLPAALLLMAPFDILASLAMDIYLPVVPAMPGVLNTTPSIIQLTLSLYMV  60

Query  61   MLGVGQVIFGPLSDRIGRRPILLAGATAFVIASLGAAWSSTAPAFVAFRLLQAVGASAML  120
            MLGVGQVIFGPLSDR+GRRPILL GATAFV ASLGAA SSTA AFVAFRL+QAVGASAML
Sbjct  61   MLGVGQVIFGPLSDRVGRRPILLVGATAFVAASLGAACSSTALAFVAFRLVQAVGASAML  120

Query  121  VATFATVRDVYANRPEGVVIYGLFSSVLAFVPALGPIAGALIGEFLGWQaifitlailam  180
            VATFATVRDVYANRPEG VIYGLFSS+LAFVPALGPIAGALIGEF GWQAIFITLA LA 
Sbjct  121  VATFATVRDVYANRPEGAVIYGLFSSMLAFVPALGPIAGALIGEFWGWQAIFITLAALAS  180

Query  181  lallnaGFRWHETRPLDQVKTRRSVLPIFASPAFWVYTVGFSAGMGTFFVFFSTAPRVLI  240
            LALLNA+FRWHETRPLDQ +T+RSVLPIFASPAFWVYTVGFSAGMGTFFVFFSTAPRVLI
Sbjct  181  LALLNASFRWHETRPLDQARTQRSVLPIFASPAFWVYTVGFSAGMGTFFVFFSTAPRVLI  240

Query  241  GQAEYSEIGFSFAFATVALVMIVTTRFAKSFVARWGIAGCVARGMALLVCGAVLLGIGEL  300
            GQA YSEIGFS+AFATVALVM+ TTRFAKSFVA+WGIAGCVARGMALLV GA+LLGIG+L
Sbjct  241  GQAGYSEIGFSLAFATVALVMVTTTRFAKSFVAKWGIAGCVARGMALLVSGAILLGIGQL  300

Query  301  YGSPSFLTFILPMWVVAVGIVFTVSVTANGALAEFDDIAGSAVAFYFCVQSLIVSIVGTL  360
            +GSPSF++FILPMWVVAVGIVFTVSVTANGALA+FDDIAGSAVAFYFC+QSLIVSIVGTL
Sbjct  301  FGSPSFFSFILPMWVVAVGIVFTVSVTANGALAQFDDIAGSAVAFYFCIQSLIVSIVGTL  360

Query  361  AVALLNGDTAWPVICYATAMavlvslglvllrlrgaaTEKSPVV  404
            AV+LLNGDTAWPVICYATAMAVLVSLGL LLR R+AATEKSPVV
Sbjct  361  AVTLLNGDTAWPVICYATAMAVLVSLGLALLRSRDAATEKSPVV  404

7) floR in NC_009140


> AY963803|10|G7|166865478|ABZ01840.1|Salmonella_enterica_subsp._enterica_SRC19|+|8118..9332|cmlA9|-|CmlA9 
chloramphenicol 
efflux protein
Length=404

 Score =  521 bits (1964),  Expect = 3e-149, Method: Compositional matrix adjust.
 Identities = 369/404 (92%), Positives = 390/404 (97%), Gaps = 0/404 (0%)

Query  1    MTTTRPAWAYTLPAALLLMAPFDILASLAMDIYLPVVPAMPGILNTTPAMIQLTLSLYMV  60
            MTTTRPAWAYTLPAALLLMAPFDILASLAMDIYLPVVPAMPG+LNTTP++IQLTLSLYMV
Sbjct  1    MTTTRPAWAYTLPAALLLMAPFDILASLAMDIYLPVVPAMPGVLNTTPSIIQLTLSLYMV  60

Query  61   MLGVGQVIFGPLSDRIGRRPILLAGATAFVIASLGAAWSSTAPAFVAFRLLQAVGASAML  120
            MLGVGQVIFGPLSDR+GRRPILL GATAFV ASLGAA SSTA AFVAFRL+QAVGASAML
Sbjct  61   MLGVGQVIFGPLSDRVGRRPILLVGATAFVAASLGAACSSTALAFVAFRLVQAVGASAML  120

Query  121  VATFATVRDVYANRPEGVVIYGLFSSVLAFVPALGPIAGALIGEFLGWQaifitlailam  180
            VATFATVRDVYANRPEG VIYGLFSS+LAFVPALGPIAGALIGEF GWQAIFITLA LA 
Sbjct  121  VATFATVRDVYANRPEGAVIYGLFSSMLAFVPALGPIAGALIGEFWGWQAIFITLAALAS  180

Query  181  lallnaGFRWHETRPLDQVKTRRSVLPIFASPAFWVYTVGFSAGMGTFFVFFSTAPRVLI  240
            LALLNA+FRWHETRPLDQ +T+RSVLPIFASPAFWVYTVGFSAGMGTFFVFFSTAPRVLI
Sbjct  181  LALLNASFRWHETRPLDQARTQRSVLPIFASPAFWVYTVGFSAGMGTFFVFFSTAPRVLI  240

Query  241  GQAEYSEIGFSFAFATVALVMIVTTRFAKSFVARWGIAGCVARGMALLVCGAVLLGIGEL  300
            GQA YSEIGFS+AFATVALVM+ TTRFAKSFVA+WGIAGCVARGMALLV GA+LLGIG+L
Sbjct  241  GQAGYSEIGFSLAFATVALVMVTTTRFAKSFVAKWGIAGCVARGMALLVSGAILLGIGQL  300

Query  301  YGSPSFLTFILPMWVVAVGIVFTVSVTANGALAEFDDIAGSAVAFYFCVQSLIVSIVGTL  360
            +GSPSF++FILPMWVVAVGIVFTVSVTANGALA+FDDIAGSAVAFYFC+QSLIVSIVGTL
Sbjct  301  FGSPSFFSFILPMWVVAVGIVFTVSVTANGALAQFDDIAGSAVAFYFCIQSLIVSIVGTL  360

Query  361  AVALLNGDTAWPVICYATAMavlvslglvllrlrgaaTEKSPVV  404
            AV+LLNGDTAWPVICYATAMAVLVSLGL LLR R+AATEKSPVV
Sbjct  361  AVTLLNGDTAWPVICYATAMAVLVSLGLALLRSRDAATEKSPVV  404

8) floR in NC_016808


> AY963803|10|G7|166865478|ABZ01840.1|Salmonella_enterica_subsp._enterica_SRC19|+|8118..9332|cmlA9|-|CmlA9 
chloramphenicol 
efflux protein
Length=404

 Score =  520 bits (1960),  Expect = 6e-149, Method: Compositional matrix adjust.
 Identities = 368/404 (92%), Positives = 390/404 (97%), Gaps = 0/404 (0%)

Query  1    MTTTRPAWAYTLPAALLLMAPFDILASLAMDIYLPVVPAMPGILNTTPAMIQLTLSLYMV  60
            MTTTRPAWAYTLPAALLLMAPFDILASLAMDIYLPVVPAMPG+LNTTP++IQLTLSLYMV
Sbjct  1    MTTTRPAWAYTLPAALLLMAPFDILASLAMDIYLPVVPAMPGVLNTTPSIIQLTLSLYMV  60

Query  61   MLGVGQVIFGPLSDRIGRRPILLAGATAFVIASLGAAWSSTAPAFVAFRLLQAVGASAML  120
            MLGVGQVIFGPLSDR+GRRPILL GATAFV ASLGAA SSTA AFVAFRL+QAVGASAML
Sbjct  61   MLGVGQVIFGPLSDRVGRRPILLVGATAFVAASLGAACSSTALAFVAFRLVQAVGASAML  120

Query  121  VATFATVRDVYANRPEGVVIYGLFSSVLAFVPALGPIAGALIGEFLGWQaifitlailam  180
            VATFATVRDVYANRPEG VIYGLFSS+LAFVPALGPIAGALIGEF GWQAIFITLA LA 
Sbjct  121  VATFATVRDVYANRPEGAVIYGLFSSMLAFVPALGPIAGALIGEFWGWQAIFITLAALAS  180

Query  181  lallnaGFRWHETRPLDQVKTRRSVLPIFASPAFWVYTVGFSAGMGTFFVFFSTAPRVLI  240
            LALLNA+FRWHETRPLDQ +T+RSVLPIFASPAFWVYTVGFSAGMGTFFVFFSTAPRVLI
Sbjct  181  LALLNASFRWHETRPLDQARTQRSVLPIFASPAFWVYTVGFSAGMGTFFVFFSTAPRVLI  240

Query  241  GQAEYSEIGFSFAFATVALVMIVTTRFAKSFVARWGIAGCVARGMALLVCGAVLLGIGEL  300
            GQA YSEIGFS+AFATVALVM+ TTRFAKSFVA+WGIAGCVARGMALLV GA+LLGIG+L
Sbjct  241  GQAGYSEIGFSLAFATVALVMVTTTRFAKSFVAKWGIAGCVARGMALLVSGAILLGIGQL  300

Query  301  YGSPSFLTFILPMWVVAVGIVFTVSVTANGALAEFDDIAGSAVAFYFCVQSLIVSIVGTL  360
            +GSPSF++FILPMWVVAVGIVFTVSVTANGALA+FDDIAGSAVAFYFC+QSLIVSIVGTL
Sbjct  301  FGSPSFFSFILPMWVVAVGIVFTVSVTANGALAQFDDIAGSAVAFYFCIQSLIVSIVGTL  360

Query  361  AVALLNSDTAWPVICYATAMavlvslglvllrlrgaaTEKSPVV  404
            AV+LLN+DTAWPVICYATAMAVLVSLGL LLR R+AATEKSPVV
Sbjct  361  AVTLLNGDTAWPVICYATAMAVLVSLGLALLRSRDAATEKSPVV  404

9) WQG_1010 in NC_020515


> AY963803|10|G7|166865478|ABZ01840.1|Salmonella_enterica_subsp._enterica_SRC19|+|8118..9332|cmlA9|-|CmlA9 
chloramphenicol 
efflux protein
Length=404

 Score =  519 bits (1957),  Expect = 1e-148, Method: Compositional matrix adjust.
 Identities = 367/404 (91%), Positives = 390/404 (97%), Gaps = 0/404 (0%)

Query  1    MTTTRPAWAYTLPAALLLMAPFDILASLAMDIYLPVVPAMPGILNTTPAMIQLTLSLYMV  60
            MTTTRPAWAYTLPAALLLMAPFDILASLAMDIYLPVVPAMPG+LNTTP++IQLTLSLYMV
Sbjct  1    MTTTRPAWAYTLPAALLLMAPFDILASLAMDIYLPVVPAMPGVLNTTPSIIQLTLSLYMV  60

Query  61   MLGVGQVIFGPLSDRIGRRPILLAGATAFVIASLGAAWSSTAPAFVAFRLLQAVGASAML  120
            MLGVGQVIFGPLSDR+GRRPILL GATAFV ASLGAA SSTA AFVAFRL+QAVGASAML
Sbjct  61   MLGVGQVIFGPLSDRVGRRPILLVGATAFVAASLGAACSSTALAFVAFRLVQAVGASAML  120

Query  121  VATFATVRDVYANRPEGVVIYGLFSSVLAFVPALGPIAGALIGEFLGWQaifitlailam  180
            VATFATVRDVYANRPEG VIYGLFSS+LAFVPALGPIAGALIGEF GWQAIFITLA LA 
Sbjct  121  VATFATVRDVYANRPEGAVIYGLFSSMLAFVPALGPIAGALIGEFWGWQAIFITLAALAS  180

Query  181  lallnaGFRWHETRPLDQVKTRRSVLPIFASPAFWVYTVGFSAGMGTYFVFFSTAPRVLI  240
            LALLNA+FRWHETRPLDQ +T+RSVLPIFASPAFWVYTVGFSAGMGT+FVFFSTAPRVLI
Sbjct  181  LALLNASFRWHETRPLDQARTQRSVLPIFASPAFWVYTVGFSAGMGTFFVFFSTAPRVLI  240

Query  241  GQAEYSEIGFSFAFATVALVMIVTTRFAKSFVARWGIAGCVARGMALLVCGAVLLGIGEL  300
            GQA YSEIGFS+AFATVALVM+ TTRFAKSFVA+WGIAGCVARGMALLV GA+LLGIG+L
Sbjct  241  GQAGYSEIGFSLAFATVALVMVTTTRFAKSFVAKWGIAGCVARGMALLVSGAILLGIGQL  300

Query  301  YGSPSFLTFILPMWVVAVGIVFTVSVTANGALAEFDDIAGSAVAFYFCVQSLIVSIVGTL  360
            +GSPSF++FILPMWVVAVGIVFTVSVTANGALA+FDDIAGSAVAFYFC+QSLIVSIVGTL
Sbjct  301  FGSPSFFSFILPMWVVAVGIVFTVSVTANGALAQFDDIAGSAVAFYFCIQSLIVSIVGTL  360

Query  361  AVALLNSDTAWPVICYATAMavlvslglvllrlrgaaTEKSPVV  404
            AV+LLN+DTAWPVICYATAMAVLVSLGL LLR R+AATEKSPVV
Sbjct  361  AVTLLNGDTAWPVICYATAMAVLVSLGLALLRSRDAATEKSPVV  404

10) RSPPHO_00751 in NC_017059


> AY963803|10|G7|166865478|ABZ01840.1|Salmonella_enterica_subsp._enterica_SRC19|+|8118..9332|cmlA9|-|CmlA9 
chloramphenicol 
efflux protein
Length=404

 Score =  403 bits (1518),  Expect = 5e-114, Method: Compositional matrix adjust.
 Identities = 292/380 (77%), Positives = 343/380 (91%), Gaps = 0/380 (0%)

Query  1    MSTPRPTWafslsaalllmaPFDVLASLAMDLYLPVVPAMPGLLNTTPFLIQLTLSLYMG  60
            M+T RP+WA++L+AALLLMAPFD+LASLAMD+YLPVVPAMPG+LNTTP +IQLTLSLYM 
Sbjct  1    MTTTRPAWAYTLPAALLLMAPFDILASLAMDIYLPVVPAMPGVLNTTPSIIQLTLSLYMV  60

Query  61   MLGVGQVIFGPMSDRLGRRPVLLVGGSVFVVASLGAACSSTATAFVAFRLLQAMGASAAL  120
            MLGVGQVIFGP+SDR+GRRP+LLVG++ FV ASLGAACSSTA AFVAFRL+QA+GASA L
Sbjct  61   MLGVGQVIFGPLSDRVGRRPILLVGATAFVAASLGAACSSTALAFVAFRLVQAVGASAML  120

Query  121  VATFATVRDVYGRRPEGVVIYGLFSSILAFVPALGPLVGALIGACCGWRAIFvvlavlav  180
            VATFATVRDVY+ RPEG VIYGLFSS+LAFVPALGP+ GALIG   GW+AIF+ LA LA 
Sbjct  121  VATFATVRDVYANRPEGAVIYGLFSSMLAFVPALGPIAGALIGEFWGWQAIFITLAALAS  180

Query  181  palvnagvQWPETRPVVAAKTRRFVLPIVTSVAFWVYTLGFSAGMGTFFVFFSTAPRVLI  240
             AL+NA+ +W ETRP+  A+T+R VLPI +S AFWVYT+GFSAGMGTFFVFFSTAPRVLI
Sbjct  181  LALLNASFRWHETRPLDQARTQRSVLPIFASPAFWVYTVGFSAGMGTFFVFFSTAPRVLI  240

Query  241  GQAGFSEvgfsvafagvavvMIVTTRFAKAFVARWGIAGCVARGMVLLVCGAVFLALGEL  300
            GQAG+SE+GFS+AFA VA+VM+ TTRFAK+FVA+WGIAGCVARGM LLV GA++L++G+L
Sbjct  241  GQAGYSEIGFSLAFATVALVMVTTTRFAKSFVAKWGIAGCVARGMALLVSGAILLGIGQL  300

Query  301  FGSPSVLTFILPMGGMAVGIVVTVSVTANGALARFDDTAGSAVALYFCFQSLIVSLAGTG  360
            FGSPS ++FILPM  +AVGIV TVSVTANGALA+FDD AGSAVA+YFC+QSLIVS+ GT 
Sbjct  301  FGSPSFFSFILPMWVVAVGIVFTVSVTANGALAQFDDIAGSAVAFYFCIQSLIVSIVGTL  360

Query  361  AVALLNGDTAWPIIGYAVTM  380
            AV+LLNGDTAWP+I YA +M
Sbjct  361  AVTLLNGDTAWPVICYATAM  380

11) RC1_2952 in NC_011420


> AY963803|10|G7|166865478|ABZ01840.1|Salmonella_enterica_subsp._enterica_SRC19|+|8118..9332|cmlA9|-|CmlA9 
chloramphenicol 
efflux protein
Length=404

 Score =  385 bits (1448),  Expect = 2e-108, Method: Compositional matrix adjust.
 Identities = 319/399 (80%), Positives = 361/399 (91%), Gaps = 5/399 (1%)

Query  1    MTSTRPAWAFTLPAALLLMAPFDILASLAMDIYLPVVPAMPAALDTTPSVIQLSLSLYMA  60
            MT+TRPAWA+TLPAALLLMAPFDILASLAMDIYLPVVPAMP+ L+TTPS+IQL+LSLYM 
Sbjct  1    MTTTRPAWAYTLPAALLLMAPFDILASLAMDIYLPVVPAMPGVLNTTPSIIQLTLSLYMV  60

Query  61   MLGVGQVIFGPISDRLGRRPvllaggalfvaaslgaagsPTAAVFVAFRllqavgasaal  120
            MLGVGQVIFGP+SDR+GRRP+LL G++ FVAASLGAA S+TA  FVAFRL+QAVGASA L
Sbjct  61   MLGVGQVIFGPLSDRVGRRPILLVGATAFVAASLGAACSSTALAFVAFRLVQAVGASAML  120

Query  121  vatfaavRDVYAGRPEGVVIYGLFSSILAFVpalgpiagaliggVFGWRAIFVTlaalal  180
            VATFA+VRDVYA RPEG VIYGLFSS+LAFVPALGPIAGALIG   GW+AIF+TLAALA 
Sbjct  121  VATFATVRDVYANRPEGAVIYGLFSSMLAFVPALGPIAGALIGEFWGWQAIFITLAALAS  180

Query  181  pallnaGVRWPETRPPATRLPDDATRRRSVLPVFASPAFWVYTAGFSAGMGTFFVFFSTA  240
             ALLNA+ RW ETRP      D+A  +RSVLP+FASPAFWVYT GFSAGMGTFFVFFSTA
Sbjct  181  LALLNASFRWHETRPL-----DQARTQRSVLPIFASPAFWVYTVGFSAGMGTFFVFFSTA  235

Query  241  PRVLIDRAGWSEIGFSLAFATVAVVMIGTTRFARSFVARWGIPGCVARGMALLVCGSALL  300
            PRVLI++AG SEIGFSLAFATVA+VM+ TTRFA+SFVA+WGI+GCVARGMALLV G+ LL
Sbjct  236  PRVLIGQAGYSEIGFSLAFATVALVMVTTTRFAKSFVAKWGIAGCVARGMALLVSGAILL  295

Query  301  AIGEVSGPPSFLGYILPMWVMAVGIVFTVSVTANGALAPFDDIAGSAVALYFCVQSLIVS  360
            +IG++ G+PSF+++ILPMWV+AVGIVFTVSVTANGALA FDDIAGSAVA+YFC+QSLIVS
Sbjct  296  GIGQLFGSPSFFSFILPMWVVAVGIVFTVSVTANGALAQFDDIAGSAVAFYFCIQSLIVS  355

Query  361  lagtaaatllngdtaWPVIGYATTMALLVSAGLAWLRSR  399
            + GT A TLLNGDTAWPVI YAT+MA+LVS GLA LRSR
Sbjct  356  IVGTLAVTLLNGDTAWPVICYATAMAVLVSLGLALLRSR  394

12) cmlA in NC_018700


> AY963803|10|G7|166865478|ABZ01840.1|Salmonella_enterica_subsp._enterica_SRC19|+|8118..9332|cmlA9|-|CmlA9 
chloramphenicol 
efflux protein
Length=404

 Score =  382 bits (1435),  Expect = 2e-107, Method: Compositional matrix adjust.
 Identities = 261/394 (67%), Positives = 333/394 (85%), Gaps = 0/394 (0%)

Query  1    MPTKNHVWRYSLPAALLLMAPFDILASLAMDIYLPIVPAMPGILGTSPAVVQLTLSLYMV  60
            M T    W Y+LPAALLLMAPFDILASLAMDIYLP+VPAMPG+L T+P+++QLTLSLYMV
Sbjct  1    MTTTRPAWAYTLPAALLLMAPFDILASLAMDIYLPVVPAMPGVLNTTPSIIQLTLSLYMV  60

Query  61   MLGLGQIVFGPVSDRIGRRPVLIGGamlfaaasfclaasssaIPFVAFRFLQAVGASAAL  120
            MLG+GQ++FGP+SDR+GRRP+L+ GA  F AAS+  A SS+A++FVAFR++QAVGASA L
Sbjct  61   MLGVGQVIFGPLSDRVGRRPILLVGATAFVAASLGAACSSTALAFVAFRLVQAVGASAML  120

Query  121  VATFATIRDVYADRPEGVVIYSLFSSILAFVPALGPIAGAMLAERFGWRSIFVTLGalai  180
            VATFAT+RDVYA+RPEG VIY+LFSS+LAFVPALGPIAGA+++E  GW++IF+TL+ALA 
Sbjct  121  VATFATVRDVYANRPEGAVIYGLFSSMLAFVPALGPIAGALIGEFWGWQAIFITLAALAS  180

Query  181  iallqalPRWHESRPSAAALSRHAFGPLFRSLAFWTYTLGFSAAMGTFFVFFSTSPRVLI  240
            +ALL+A  RWHE+RP   A ++++  P+F S AFW YT+GFSA+MGTFFVFFST+PRVLI
Sbjct  181  LALLNASFRWHETRPLDQARTQRSVLPIFASPAFWVYTVGFSAGMGTFFVFFSTAPRVLI  240

Query  241  DKAGYSELQFSLAFATVAIVMIITARFAERFVSRWGTSGSllrgmcmlllgaalliagET  300
            ++AGYSE+ FSLAFATVA+VM+ T+RFA  FV++WG +G + RGM +L+ GA LL  G+ 
Sbjct  241  GQAGYSEIGFSLAFATVALVMVTTTRFAKSFVAKWGIAGCVARGMALLVSGAILLGIGQL  300

Query  301  FGVPSSWTFVMPMWVMAVGIVFTVSVTANGALEDFGDMAGSAVAVYFCVQSLIVGTAGTL  360
            FG PS  +F++PMWV+AVGIVFTVSVTANGAL +F+D+AGSAVA YFC+QSLIV+  GTL
Sbjct  301  FGSPSFFSFILPMWVVAVGIVFTVSVTANGALAQFDDIAGSAVAFYFCIQSLIVSIVGTL  360

Query  361  LVIGLPGDSAWPLVVYASIMAGVVLIARRQLHSR  394
             V  L GD+AWP++ YA+ MA +V ++   L+SR
Sbjct  361  AVTLLNGDTAWPVICYATAMAVLVSLGLALLRSR  394

13) Sinme_2683 in NC_015590


> AY963803|10|G7|166865478|ABZ01840.1|Salmonella_enterica_subsp._enterica_SRC19|+|8118..9332|cmlA9|-|CmlA9 
chloramphenicol 
efflux protein
Length=404

 Score =  380 bits (1430),  Expect = 5e-107, Method: Compositional matrix adjust.
 Identities = 259/394 (66%), Positives = 333/394 (85%), Gaps = 0/394 (0%)

Query  1    MPTKNHVWRYSLPAALLLMAPFDILASLAMDIYLPIVPAMPGILGTSPAVVQLTLSLYMV  60
            M T    W Y+LPAALLLMAPFDILASLAMDIYLP+VPAMPG+L T+P+++QLTLSLYMV
Sbjct  1    MTTTRPAWAYTLPAALLLMAPFDILASLAMDIYLPVVPAMPGVLNTTPSIIQLTLSLYMV  60

Query  61   MLGLGQIVFGPVSDRIGRRPVLIGGamlfaaasfclaasssaIPFVAFRFLQAVGASAAL  120
            MLG+GQ++FGP+SDR+GRRP+L+ GA  F AAS+  A SS+A++FVAFR++QAVGASA L
Sbjct  61   MLGVGQVIFGPLSDRVGRRPILLVGATAFVAASLGAACSSTALAFVAFRLVQAVGASAML  120

Query  121  VATFATIRDVYADRPESVVIYSLFSSILAFVPALGPITGAMLAERFGWRSIFVTLGalai  180
            VATFAT+RDVYA+RPE+ VIY+LFSS+LAFVPALGPI+GA+++E  GW++IF+TL+ALA 
Sbjct  121  VATFATVRDVYANRPEGAVIYGLFSSMLAFVPALGPIAGALIGEFWGWQAIFITLAALAS  180

Query  181  iallqalPRWHESRPSAAALSRHAFGPLFRSLAFWTYTLGFSAAMGTFFVFFSTSPRVLI  240
            +ALL+A  RWHE+RP   A ++++  P+F S AFW YT+GFSA+MGTFFVFFST+PRVLI
Sbjct  181  LALLNASFRWHETRPLDQARTQRSVLPIFASPAFWVYTVGFSAGMGTFFVFFSTAPRVLI  240

Query  241  DKAGYSELQFSLAFATVAIVMIITARFAERFVSRWGTSGSllrgmcmlllgaalliagET  300
            ++AGYSE+ FSLAFATVA+VM+ T+RFA  FV++WG +G + RGM +L+ GA LL  G+ 
Sbjct  241  GQAGYSEIGFSLAFATVALVMVTTTRFAKSFVAKWGIAGCVARGMALLVSGAILLGIGQL  300

Query  301  FGVPSSWTFVMPMWVMAVGIVFTVSVTANGALEDFGDMAGSAVAVYFCVQSLIVGTAGTL  360
            FG PS  +F++PMWV+AVGIVFTVSVTANGAL +F+D+AGSAVA YFC+QSLIV+  GTL
Sbjct  301  FGSPSFFSFILPMWVVAVGIVFTVSVTANGALAQFDDIAGSAVAFYFCIQSLIVSIVGTL  360

Query  361  LVIGLPGDSAWPLVVYASIMAGVVLIARRQLHSR  394
             V  L GD+AWP++ YA+ MA +V ++   L+SR
Sbjct  361  AVTLLNGDTAWPVICYATAMAVLVSLGLALLRSR  394

14) SinmeB_2459 in NC_017322


> AY963803|10|G7|166865478|ABZ01840.1|Salmonella_enterica_subsp._enterica_SRC19|+|8118..9332|cmlA9|-|CmlA9 
chloramphenicol 
efflux protein
Length=404

 Score =  380 bits (1430),  Expect = 5e-107, Method: Compositional matrix adjust.
 Identities = 259/394 (66%), Positives = 333/394 (85%), Gaps = 0/394 (0%)

Query  1    MPTKNHVWRYSLPAALLLMAPFDILASLAMDIYLPIVPAMPGILGTSPAVVQLTLSLYMV  60
            M T    W Y+LPAALLLMAPFDILASLAMDIYLP+VPAMPG+L T+P+++QLTLSLYMV
Sbjct  1    MTTTRPAWAYTLPAALLLMAPFDILASLAMDIYLPVVPAMPGVLNTTPSIIQLTLSLYMV  60

Query  61   MLGLGQIVFGPVSDRIGRRPVLIGGamlfaaasfclaasssaIPFVAFRFLQAVGASAAL  120
            MLG+GQ++FGP+SDR+GRRP+L+ GA  F AAS+  A SS+A++FVAFR++QAVGASA L
Sbjct  61   MLGVGQVIFGPLSDRVGRRPILLVGATAFVAASLGAACSSTALAFVAFRLVQAVGASAML  120

Query  121  VATFATIRDVYADRPESVVIYSLFSSILAFVPALGPITGAMLAERFGWRSIFVTLGalai  180
            VATFAT+RDVYA+RPE+ VIY+LFSS+LAFVPALGPI+GA+++E  GW++IF+TL+ALA 
Sbjct  121  VATFATVRDVYANRPEGAVIYGLFSSMLAFVPALGPIAGALIGEFWGWQAIFITLAALAS  180

Query  181  iallqalPRWHESRPSAAALSRHAFGPLFRSLAFWTYTLGFSAAMGTFFVFFSTSPRVLI  240
            +ALL+A  RWHE+RP   A ++++  P+F S AFW YT+GFSA+MGTFFVFFST+PRVLI
Sbjct  181  LALLNASFRWHETRPLDQARTQRSVLPIFASPAFWVYTVGFSAGMGTFFVFFSTAPRVLI  240

Query  241  DKAGYSELQFSLAFATVAIVMIITARFAERFVSRWGTSGSllrgmcmlllgaalliagET  300
            ++AGYSE+ FSLAFATVA+VM+ T+RFA  FV++WG +G + RGM +L+ GA LL  G+ 
Sbjct  241  GQAGYSEIGFSLAFATVALVMVTTTRFAKSFVAKWGIAGCVARGMALLVSGAILLGIGQL  300

Query  301  FGVPSSWTFVMPMWVMAVGIVFTVSVTANGALEDFGDMAGSAVAVYFCVQSLIVGTAGTL  360
            FG PS  +F++PMWV+AVGIVFTVSVTANGAL +F+D+AGSAVA YFC+QSLIV+  GTL
Sbjct  301  FGSPSFFSFILPMWVVAVGIVFTVSVTANGALAQFDDIAGSAVAFYFCIQSLIVSIVGTL  360

Query  361  LVIGLPGDSAWPLVVYASIMAGVVLIARRQLHSR  394
             V  L GD+AWP++ YA+ MA +V ++   L+SR
Sbjct  361  AVTLLNGDTAWPVICYATAMAVLVSLGLALLRSR  394

15) SM11_chr2788 in NC_017325


> AY963803|10|G7|166865478|ABZ01840.1|Salmonella_enterica_subsp._enterica_SRC19|+|8118..9332|cmlA9|-|CmlA9 
chloramphenicol 
efflux protein
Length=404

 Score =  380 bits (1430),  Expect = 5e-107, Method: Compositional matrix adjust.
 Identities = 259/394 (66%), Positives = 333/394 (85%), Gaps = 0/394 (0%)

Query  1    MPTKNHVWRYSLPAALLLMAPFDILASLAMDIYLPIVPAMPGILGTSPAVVQLTLSLYMV  60
            M T    W Y+LPAALLLMAPFDILASLAMDIYLP+VPAMPG+L T+P+++QLTLSLYMV
Sbjct  1    MTTTRPAWAYTLPAALLLMAPFDILASLAMDIYLPVVPAMPGVLNTTPSIIQLTLSLYMV  60

Query  61   MLGLGQIVFGPVSDRIGRRPVLIGGamlfaaasfclaasssaIPFVAFRFLQAVGASAAL  120
            MLG+GQ++FGP+SDR+GRRP+L+ GA  F AAS+  A SS+A++FVAFR++QAVGASA L
Sbjct  61   MLGVGQVIFGPLSDRVGRRPILLVGATAFVAASLGAACSSTALAFVAFRLVQAVGASAML  120

Query  121  VATFATIRDVYADRPESVVIYSLFSSILAFVPALGPITGAMLAERFGWRSIFVTLGalai  180
            VATFAT+RDVYA+RPE+ VIY+LFSS+LAFVPALGPI+GA+++E  GW++IF+TL+ALA 
Sbjct  121  VATFATVRDVYANRPEGAVIYGLFSSMLAFVPALGPIAGALIGEFWGWQAIFITLAALAS  180

Query  181  iallqalPRWHESRPSAAALSRHAFGPLFRSLAFWTYTLGFSAAMGTFFVFFSTSPRVLI  240
            +ALL+A  RWHE+RP   A ++++  P+F S AFW YT+GFSA+MGTFFVFFST+PRVLI
Sbjct  181  LALLNASFRWHETRPLDQARTQRSVLPIFASPAFWVYTVGFSAGMGTFFVFFSTAPRVLI  240

Query  241  DKAGYSELQFSLAFATVAIVMIITARFAERFVSRWGTSGSllrgmcmlllgaalliagET  300
            ++AGYSE+ FSLAFATVA+VM+ T+RFA  FV++WG +G + RGM +L+ GA LL  G+ 
Sbjct  241  GQAGYSEIGFSLAFATVALVMVTTTRFAKSFVAKWGIAGCVARGMALLVSGAILLGIGQL  300

Query  301  FGVPSSWTFVMPMWVMAVGIVFTVSVTANGALEDFGDMAGSAVAVYFCVQSLIVGTAGTL  360
            FG PS  +F++PMWV+AVGIVFTVSVTANGAL +F+D+AGSAVA YFC+QSLIV+  GTL
Sbjct  301  FGSPSFFSFILPMWVVAVGIVFTVSVTANGALAQFDDIAGSAVAFYFCIQSLIVSIVGTL  360

Query  361  LVIGLPGDSAWPLVVYASIMAGVVLIARRQLHSR  394
             V  L GD+AWP++ YA+ MA +V ++   L+SR
Sbjct  361  AVTLLNGDTAWPVICYATAMAVLVSLGLALLRSR  394

16) C770_GR4Chr2739 in NC_019845


> AY963803|10|G7|166865478|ABZ01840.1|Salmonella_enterica_subsp._enterica_SRC19|+|8118..9332|cmlA9|-|CmlA9 
chloramphenicol 
efflux protein
Length=404

 Score =  378 bits (1422),  Expect = 2e-106, Method: Compositional matrix adjust.
 Identities = 259/394 (66%), Positives = 332/394 (85%), Gaps = 0/394 (0%)

Query  1    MPTKNHVWRYSLPAALLLMAPFDILASLAMDIYLPIVPAMPGILGTSPAVVQLTLSLYMV  60
            M T    W Y+LPAALLLMAPFDILASLAMDIYLP+VPAMPG+L T+P+++QLTLSLYMV
Sbjct  1    MTTTRPAWAYTLPAALLLMAPFDILASLAMDIYLPVVPAMPGVLNTTPSIIQLTLSLYMV  60

Query  61   MLGLGQIVFGPVSDRIGRRPVLIGGamlfaaasfclaasssaIPFVAFRFLQAVGASAAL  120
            MLG+GQ++FGP+SDR+GRRP+L+ GA  F AAS+  A SS+A++FVAFR++QAVGASA L
Sbjct  61   MLGVGQVIFGPLSDRVGRRPILLVGATAFVAASLGAACSSTALAFVAFRLVQAVGASAML  120

Query  121  VATFATIRDVYADRPESVVIYSLFSSILAFVPALGPITGAMLAERFGWRLIFVTLGalai  180
            VATFAT+RDVYA+RPE+ VIY+LFSS+LAFVPALGPI+GA+++E  GW+ IF+TL+ALA 
Sbjct  121  VATFATVRDVYANRPEGAVIYGLFSSMLAFVPALGPIAGALIGEFWGWQAIFITLAALAS  180

Query  181  iallqalPRWHESRPSAAALSRHAFGPLFRSLAFWTYTLGFSAAMGTFFVFFSTSPRVLI  240
            +ALL+A  RWHE+RP   A ++++  P+F S AFW YT+GFSA+MGTFFVFFST+PRVLI
Sbjct  181  LALLNASFRWHETRPLDQARTQRSVLPIFASPAFWVYTVGFSAGMGTFFVFFSTAPRVLI  240

Query  241  DKAGYSELQFSLAFATVAIVMIITARFAERFVSRWGTSGSllrgmcmlllgaalliagET  300
            ++AGYSE+ FSLAFATVA+VM+ T+RFA  FV++WG +G + RGM +L+ GA LL  G+ 
Sbjct  241  GQAGYSEIGFSLAFATVALVMVTTTRFAKSFVAKWGIAGCVARGMALLVSGAILLGIGQL  300

Query  301  FGVPSSWTFVMPMWVMAVGIVFTVSVTANGALEDFGDMAGSAVAVYFCVQSLIVGTAGTL  360
            FG PS  +F++PMWV+AVGIVFTVSVTANGAL +F+D+AGSAVA YFC+QSLIV+  GTL
Sbjct  301  FGSPSFFSFILPMWVVAVGIVFTVSVTANGALAQFDDIAGSAVAFYFCIQSLIVSIVGTL  360

Query  361  LVIGLPGDSAWPLVVYASIMAGVVLIARRQLHSR  394
             V  L GD+AWP++ YA+ MA +V ++   L+SR
Sbjct  361  AVTLLNGDTAWPVICYATAMAVLVSLGLALLRSR  394

17) SMc00744 in NC_003047


> AY963803|10|G7|166865478|ABZ01840.1|Salmonella_enterica_subsp._enterica_SRC19|+|8118..9332|cmlA9|-|CmlA9 
chloramphenicol 
efflux protein
Length=404

 Score =  378 bits (1421),  Expect = 3e-106, Method: Compositional matrix adjust.
 Identities = 258/394 (66%), Positives = 333/394 (85%), Gaps = 0/394 (0%)

Query  1    MPTKNHVWRYSLPAALLLMAPFDILASLAMDIYLPIVPAMPGILGTSPAVVQLTLSLYMV  60
            M T    W Y+LPAALLLMAPFDILASLAMDIYLP+VPAMPG+L T+P+++QLTLSLYMV
Sbjct  1    MTTTRPAWAYTLPAALLLMAPFDILASLAMDIYLPVVPAMPGVLNTTPSIIQLTLSLYMV  60

Query  61   MLGLGQIVFGPVSDRIGRRPVLIGGamlfaaasfclaasssaIPFVAFRFLQAVGASAAL  120
            MLG+GQ++FGP+SDR+GRRP+L+ GA  F AAS+  A SS+A++FVAFR++QAVGASA L
Sbjct  61   MLGVGQVIFGPLSDRVGRRPILLVGATAFVAASLGAACSSTALAFVAFRLVQAVGASAML  120

Query  121  VATFATIRDVYADRPESVVIYSLFSSILAFVPALGPITGAMLAERFGWRSIFVTLGalai  180
            VATFAT+RDVYA+RPE+ VIY+LFSS+LAFVPALGPI+GA+++E  GW++IF+TL+ALA 
Sbjct  121  VATFATVRDVYANRPEGAVIYGLFSSMLAFVPALGPIAGALIGEFWGWQAIFITLAALAS  180

Query  181  iallqalPRWHESRPSAAALSRHAFGPLLRSLAFWTYTLGFSAAMGTFFVFFSTSPRVLI  240
            +ALL+A  RWHE+RP   A ++++  P++ S AFW YT+GFSA+MGTFFVFFST+PRVLI
Sbjct  181  LALLNASFRWHETRPLDQARTQRSVLPIFASPAFWVYTVGFSAGMGTFFVFFSTAPRVLI  240

Query  241  DKAGYSELQFSLAFATVAIVMIITARFAERFVSRWGTSGSllrgmcmlllgaalliagET  300
            ++AGYSE+ FSLAFATVA+VM+ T+RFA  FV++WG +G + RGM +L+ GA LL  G+ 
Sbjct  241  GQAGYSEIGFSLAFATVALVMVTTTRFAKSFVAKWGIAGCVARGMALLVSGAILLGIGQL  300

Query  301  FGVPSSWTFVMPMWVMAVGIVFTVSVTANGALEDFGDMAGSAVAVYFCVQSLIVGTAGTL  360
            FG PS  +F++PMWV+AVGIVFTVSVTANGAL +F+D+AGSAVA YFC+QSLIV+  GTL
Sbjct  301  FGSPSFFSFILPMWVVAVGIVFTVSVTANGALAQFDDIAGSAVAFYFCIQSLIVSIVGTL  360

Query  361  LVIGLPGDSAWPLVVYASIMAGVVLIARRQLHSR  394
             V  L GD+AWP++ YA+ MA +V ++   L+SR
Sbjct  361  AVTLLNGDTAWPVICYATAMAVLVSLGLALLRSR  394

18) SM2011_c00744 in NC_020528


> AY963803|10|G7|166865478|ABZ01840.1|Salmonella_enterica_subsp._enterica_SRC19|+|8118..9332|cmlA9|-|CmlA9 
chloramphenicol 
efflux protein
Length=404

 Score =  378 bits (1421),  Expect = 3e-106, Method: Compositional matrix adjust.
 Identities = 258/394 (66%), Positives = 333/394 (85%), Gaps = 0/394 (0%)

Query  1    MPTKNHVWRYSLPAALLLMAPFDILASLAMDIYLPIVPAMPGILGTSPAVVQLTLSLYMV  60
            M T    W Y+LPAALLLMAPFDILASLAMDIYLP+VPAMPG+L T+P+++QLTLSLYMV
Sbjct  1    MTTTRPAWAYTLPAALLLMAPFDILASLAMDIYLPVVPAMPGVLNTTPSIIQLTLSLYMV  60

Query  61   MLGLGQIVFGPVSDRIGRRPVLIGGamlfaaasfclaasssaIPFVAFRFLQAVGASAAL  120
            MLG+GQ++FGP+SDR+GRRP+L+ GA  F AAS+  A SS+A++FVAFR++QAVGASA L
Sbjct  61   MLGVGQVIFGPLSDRVGRRPILLVGATAFVAASLGAACSSTALAFVAFRLVQAVGASAML  120

Query  121  VATFATIRDVYADRPESVVIYSLFSSILAFVPALGPITGAMLAERFGWRSIFVTLGalai  180
            VATFAT+RDVYA+RPE+ VIY+LFSS+LAFVPALGPI+GA+++E  GW++IF+TL+ALA 
Sbjct  121  VATFATVRDVYANRPEGAVIYGLFSSMLAFVPALGPIAGALIGEFWGWQAIFITLAALAS  180

Query  181  iallqalPRWHESRPSAAALSRHAFGPLLRSLAFWTYTLGFSAAMGTFFVFFSTSPRVLI  240
            +ALL+A  RWHE+RP   A ++++  P++ S AFW YT+GFSA+MGTFFVFFST+PRVLI
Sbjct  181  LALLNASFRWHETRPLDQARTQRSVLPIFASPAFWVYTVGFSAGMGTFFVFFSTAPRVLI  240

Query  241  DKAGYSELQFSLAFATVAIVMIITARFAERFVSRWGTSGSllrgmcmlllgaalliagET  300
            ++AGYSE+ FSLAFATVA+VM+ T+RFA  FV++WG +G + RGM +L+ GA LL  G+ 
Sbjct  241  GQAGYSEIGFSLAFATVALVMVTTTRFAKSFVAKWGIAGCVARGMALLVSGAILLGIGQL  300

Query  301  FGVPSSWTFVMPMWVMAVGIVFTVSVTANGALEDFGDMAGSAVAVYFCVQSLIVGTAGTL  360
            FG PS  +F++PMWV+AVGIVFTVSVTANGAL +F+D+AGSAVA YFC+QSLIV+  GTL
Sbjct  301  FGSPSFFSFILPMWVVAVGIVFTVSVTANGALAQFDDIAGSAVAFYFCIQSLIVSIVGTL  360

Query  361  LVIGLPGDSAWPLVVYASIMAGVVLIARRQLHSR  394
             V  L GD+AWP++ YA+ MA +V ++   L+SR
Sbjct  361  AVTLLNGDTAWPVICYATAMAVLVSLGLALLRSR  394

19) floR in NC_011985


> AY963803|10|G7|166865478|ABZ01840.1|Salmonella_enterica_subsp._enterica_SRC19|+|8118..9332|cmlA9|-|CmlA9 
chloramphenicol 
efflux protein
Length=404

 Score =  378 bits (1421),  Expect = 3e-106, Method: Compositional matrix adjust.
 Identities = 248/395 (63%), Positives = 331/395 (84%), Gaps = 0/395 (0%)

Query  18   MPSRIPTWNYRLPAALLLMAPFDILTSLAMDIYLPVVPIMPRALDTSPAVVQLTLSLYML  77
            M +  P+W Y LPAALLLMAPFDIL+SLAMDIYLPVVP MP  L+T+P+++QLTLSLYM+
Sbjct  1    MTTTRPAWAYTLPAALLLMAPFDILASLAMDIYLPVVPAMPGVLNTTPSIIQLTLSLYMV  60

Query  78   ILGAGQIVFGPLSDIAGRRPVLLGGAALFAATSFLMAGTSSADLFMALRLLQAVGASAAL  137
            +LG GQ++FGPLSD  GRRP+LL GA+ F A+S+  A +S+A  F+A+RL+QAVGASA L
Sbjct  61   MLGVGQVIFGPLSDRVGRRPILLVGATAFVAASLGAACSSTALAFVAFRLVQAVGASAML  120

Query  138  VATFATVRDVYAERPEGAVIYSLLGSMLSFVPAVGPIAGALIANHFGWRAIFLALGILTL  197
            VATFATVRDVYA+RPEGAVIY+L++SML+FVPA+GPIAGALI++  GW+AIF++L+ L+ 
Sbjct  121  VATFATVRDVYANRPEGAVIYGLFSSMLAFVPALGPIAGALIGEFWGWQAIFITLAALAS  180

Query  198  AAIFNATLRWDETRPVTVSRPKTAFRPILKDPSFWTYTIGFSAAMGAFFVFFSTAPRVLI  257
             A++NA++RW+ETRP+  +R + +  PI+  P+FW YT+GFSA+MG+FFVFFSTAPRVLI
Sbjct  181  LALLNASFRWHETRPLDQARTQRSVLPIFASPAFWVYTVGFSAGMGTFFVFFSTAPRVLI  240

Query  258  DQagfsslafslafataalVMIATARFAGRFVKRWGTAGSLARGMLMLLVGATLLAGGEL  317
            +QAG+S ++FSLAFAT ALVM++T+RFA  FV +WG AG +ARGM +L+ GA LL+ G+L
Sbjct  241  GQAGYSEIGFSLAFATVALVMVTTTRFAKSFVAKWGIAGCVARGMALLVSGAILLGIGQL  300

Query  318  FLTPSFVSFVLPMWIIAIGIVFTTAVTANGALRAFGDTAGTAVALYFCVESLIVGLIGTL  377
            F +PSF SF+LPMW++A+GIVFT +VTANGAL  F+D AG+AVA+YFC++SLIV+++GTL
Sbjct  301  FGSPSFFSFILPMWVVAVGIVFTVSVTANGALAQFDDIAGSAVAFYFCIQSLIVSIVGTL  360

Query  378  FVVILGGDTAWPLAGYCAVMALVTLFSLWRLQKRT  412
             V +L GDTAWP+  Y + MA++  ++L  L+ R 
Sbjct  361  AVTLLNGDTAWPVICYATAMAVLVSLGLALLRSRD  395

20) MXAN_2566 in NC_008095


> AY963803|10|G7|166865478|ABZ01840.1|Salmonella_enterica_subsp._enterica_SRC19|+|8118..9332|cmlA9|-|CmlA9 
chloramphenicol 
efflux protein
Length=404

 Score =  360 bits (1352),  Expect = 8e-101, Method: Compositional matrix adjust.
 Identities = 253/378 (67%), Positives = 325/378 (86%), Gaps = 0/378 (0%)

Query  5    KSPSWNHAVPAALLLMAPFDLLASLAMDIYLPVVPAMPGILNTSPAIVQLTLSLYMAVLG  64
              P+W  ++PAALLLMAPFD+LASLAMDIYLPVVPAMPG+LNT+P+I+QLTLSLYM +LG
Sbjct  4    TRPAWAYTLPAALLLMAPFDILASLAMDIYLPVVPAMPGVLNTTPSIIQLTLSLYMVMLG  63

Query  65   LGQMVFGPVSDRIGRRRVLLTGALLFAVTSFLLAGASDAAMFVGLRLVQAMGASAALVAT  124
            +GQ++FGP+SDR+GRR +LL GA  F  +S+  A +S A  FV++RLVQA+GASA LVAT
Sbjct  64   VGQVIFGPLSDRVGRRPILLVGATAFVAASLGAACSSTALAFVAFRLVQAVGASAMLVAT  123

Query  125  FATVRDVYAERPESATLYSLFSAMLAFVPALGPIAGALLMQRWGWRAIFITLGVLATAAL  184
            FATVRDVYA+RPE+A +Y+LFS+MLAFVPALGPIAGAL+ + WGW+AIFITL+ LA+ AL
Sbjct  124  FATVRDVYANRPEGAVIYGLFSSMLAFVPALGPIAGALIGEFWGWQAIFITLAALASLAL  183

Query  185  LQALPRWHETRPAQGLQSRPAFRHILRSATFWTYTLGFSAAMGSFFVFFSTAPRVLIGQA  244
            L+A  RWHETRP +  +++ +   I+ S++FW YT+GFSA+MG+FFVFFSTAPRVLIGQA
Sbjct  184  LNASFRWHETRPLDQARTQRSVLPIFASPAFWVYTVGFSAGMGTFFVFFSTAPRVLIGQA  243

Query  245  GFSELGFSLAFATAALAMILTTRFAKRFVGSWGLAGSltrgmgmlllgaglltagqllat  304
            G+SE+GFSLAFAT AL M+ TTRFAK FV+ WG+AG ++RGM++L+ GA LL  GQL+++
Sbjct  244  GYSEIGFSLAFATVALVMVTTTRFAKSFVAKWGIAGCVARGMALLVSGAILLGIGQLFGS  303

Query  305  PSFWTFVAPMWLIAAGIVFSVSVTANGALQAFGDVAGTAVALYFCIQSlivgvlgtlmvv  364
            PSF +F+ PMW++A GIVF+VSVTANGAL  F+D+AG+AVA+YFCIQSLIV+++GTL V 
Sbjct  304  PSFFSFILPMWVVAVGIVFTVSVTANGALAQFDDIAGSAVAFYFCIQSLIVSIVGTLAVT  363

Query  365  lldgDTAWPLVGYASLMA  382
            LL+GDTAWP++ YA+ MA
Sbjct  364  LLNGDTAWPVICYATAMA  381

21) Meso_3944 in NC_008254


> AY963803|10|G7|166865478|ABZ01840.1|Salmonella_enterica_subsp._enterica_SRC19|+|8118..9332|cmlA9|-|CmlA9 
chloramphenicol 
efflux protein
Length=404

 Score =  359 bits (1350),  Expect = 1e-100, Method: Compositional matrix adjust.
 Identities = 236/401 (59%), Positives = 327/401 (82%), Gaps = 0/401 (0%)

Query  1    MSRNIRLWTYSLPVALMLLAPFNILASLGMDIYLPAIPAMPGILGTTPNVVQLTLTLYMI  60
            M+     W+Y+LP AL+L+APF+ILASL+MDIYLP +PAMPG+L TTP+++QLTL+LYM+
Sbjct  1    MTTTRPAWAYTLPAALLLMAPFDILASLAMDIYLPVVPAMPGVLNTTPSIIQLTLSLYMV  60

Query  61   MLGVGQILFGPLSDRLGRRPVLIGGAIlfatasfalaatssaglflllrlaqatgaaavl  120
            MLGVGQ++FGPLSDR+GRRP+L+ GA  F +AS++ A +S+A  F+ +RL QA GA+A+L
Sbjct  61   MLGVGQVIFGPLSDRVGRRPILLVGATAFVAASLGAACSSTALAFVAFRLVQAVGASAML  120

Query  121  valfaTIRDVYAERPESAVIYSLMNAMLAFVPAVGPIAGALIMGIWGWRAIFLALGIPAL  180
            VA FAT+RDVYA+RPE+AVIY+L ++MLAFVPA+GPIAGALI  +WGW+AIF++L+  A 
Sbjct  121  VATFATVRDVYANRPEGAVIYGLFSSMLAFVPALGPIAGALIGEFWGWQAIFITLAALAS  180

Query  181  IVLTLMLPAWHETRQAKGGQDSAGFRPVLRSPAFWTYTIGFGTAMGTFFVFFSTAPRVLI  240
            + L      WHETR    ++   +  P++ SPAFW YT+GF+++MGTFFVFFSTAPRVLI
Sbjct  181  LALLNASFRWHETRPLDQARTQRSVLPIFASPAFWVYTVGFSAGMGTFFVFFSTAPRVLI  240

Query  241  DGAGFSELDFSFAFASVAIAMIITTRFAKSFVARWGIPGTLMRGMVMLILGAFLLAIGQL  300
            + AG+SE++FS+AFA+VA+ M+ TTRFAKSFVA+WGI+G + RGM +L+ GA+LL+IGQL
Sbjct  241  GQAGYSEIGFSLAFATVALVMVTTTRFAKSFVAKWGIAGCVARGMALLVSGAILLGIGQL  300

Query  301  FLAPSFWSLVVPMWLIAIGIVFTTAVTANGALQEFGETAGMAVALHFCIQSLLVGIVGTG  360
            F +PSF S+++PMW++A+GIVFT +VTANGAL +F++ AG AVA+ FCIQSL+V+IVGT 
Sbjct  301  FGSPSFFSFILPMWVVAVGIVFTVSVTANGALAQFDDIAGSAVAFYFCIQSLIVSIVGTL  360

Query  361  FVIMLDGSTAWPLITNAAGMAAVTLIALFWLGGRNLHPQTA  401
             V +L+G TAWP+I  A++MA +  ++L  L +R+   + +
Sbjct  361  AVTLLNGDTAWPVICYATAMAVLVSLGLALLRSRDAATEKS  401

22) RTCIAT899_PC04380 in NC_020062


> AY963803|10|G7|166865478|ABZ01840.1|Salmonella_enterica_subsp._enterica_SRC19|+|8118..9332|cmlA9|-|CmlA9 
chloramphenicol 
efflux protein
Length=404

 Score =  358 bits (1343),  Expect = 4e-100, Method: Compositional matrix adjust.
 Identities = 266/372 (72%), Positives = 330/372 (89%), Gaps = 0/372 (0%)

Query  1    MSDIRPSWAYSLPAALLLMAPFDILASLAMDIYLPVVPSMPAILNTTPAVIQLTLSLYMI  60
            M+  RP+WAY+LPAALLLMAPFDILASLAMDIYLPVVP+MP++LNTTP++IQLTLSLYM+
Sbjct  1    MTTTRPAWAYTLPAALLLMAPFDILASLAMDIYLPVVPAMPGVLNTTPSIIQLTLSLYMV  60

Query  61   MLGLGQVVFGPLSDRIGRRPvllsgalvfaassfgaalagsaPIFVLCRLLQAISASAAL  120
            MLG+GQV+FGPLSDR+GRRP+LL GA  F A+S+GAA +++A  FV  RL+QA++ASA L
Sbjct  61   MLGVGQVIFGPLSDRVGRRPILLVGATAFVAASLGAACSSTALAFVAFRLVQAVGASAML  120

Query  121  VATFATVRDVYGNRPEQAIIYATFGSILSFVpalgpiagaiiaERFGWRAIFIllsllal  180
            VATFATVRDVY+NRPE A+IY+ F+S+L+FVPALGPIAGA+I+E  GW+AIFI L+ LA 
Sbjct  121  VATFATVRDVYANRPEGAVIYGLFSSMLAFVPALGPIAGALIGEFWGWQAIFITLAALAS  180

Query  181  aaTFHAMAKWHETRPQGSTAPRRSIWPIFRSRSFWTYTLAFSAGMGTFFVFFSTAPRVLI  240
             A ++A  +WHETRP + +  +RS+ PIF S +FW YT++FSAGMGTFFVFFSTAPRVLI
Sbjct  181  LALLNASFRWHETRPLDQARTQRSVLPIFASPAFWVYTVGFSAGMGTFFVFFSTAPRVLI  240

Query  241  GRAGYSELGFSIAFATVAVVMIAAARFAGWFVERWGVAGCVargmgllligaaalalgql  300
            G+AGYSE+GFS+AFATVA+VM++++RFA  FV +WG+AGCVARGM+LL+ GA  L++GQL
Sbjct  241  GQAGYSEIGFSLAFATVALVMVTTTRFAKSFVAKWGIAGCVARGMALLVSGAILLGIGQL  300

Query  301  hgMPSFASFVLPMWIMAVGIVFAGSVTANGALAEFGDIAGSAVAFYFCIQSLIVSLVGTL  360
             G PSF SF+LPMW++AVGIVF+ SVTANGALA+F+DIAGSAVAFYFCIQSLIVS+VGTL
Sbjct  301  FGSPSFFSFILPMWVVAVGIVFTVSVTANGALAQFDDIAGSAVAFYFCIQSLIVSIVGTL  360

Query  361  AVTALDGDSAWP  372
            AVT L+GD+AWP
Sbjct  361  AVTLLNGDTAWP  372

23) Smed_2519 in NC_009636


> AY963803|10|G7|166865478|ABZ01840.1|Salmonella_enterica_subsp._enterica_SRC19|+|8118..9332|cmlA9|-|CmlA9 
chloramphenicol 
efflux protein
Length=404

 Score =  356 bits (1338),  Expect = 1e-99, Method: Compositional matrix adjust.
 Identities = 259/402 (65%), Positives = 332/402 (83%), Gaps = 5/402 (1%)

Query  1    MSSKPHVWRYSLPAALLLMAPFDILASLAMDIYLPIVPAMPGILGTSPAVVQLTLSLYVV  60
            M++    W Y+LPAALLLMAPFDILASLAMDIYLP+VPAMPG+L T+P+++QLTLSLY+V
Sbjct  1    MTTTRPAWAYTLPAALLLMAPFDILASLAMDIYLPVVPAMPGVLNTTPSIIQLTLSLYMV  60

Query  61   MLGLGQIVFGPLSDRIGRRPVLIGGamlfaaasfclaasssaIPFVAFRFLQAIGASAAL  120
            MLG+GQ++FGPLSDR+GRRP+L+ GA  F AAS+  A SS+A++FVAFR++QA+GASA L
Sbjct  61   MLGVGQVIFGPLSDRVGRRPILLVGATAFVAASLGAACSSTALAFVAFRLVQAVGASAML  120

Query  121  VATFSTIRDVYGNRPESVVIYSLFSSILAFVpalgpiagaalaERFGWRSIFVTLGAFAV  180
            VATF+T+RDVY+NRPE+ VIY+LFSS+LAFVPALGPIAGA ++E  GW++IF+TL+A+A 
Sbjct  121  VATFATVRDVYANRPEGAVIYGLFSSMLAFVPALGPIAGALIGEFWGWQAIFITLAALAS  180

Query  181  IALLQALPRWHESRPSAPAPSRHAFGPLLRSLAFWTYTLGFSAAMGTFFVFFSTSPRVLI  240
            +ALL+A  RWHE+RP   A ++++  P++ S AFW YT+GFSA+MGTFFVFFST+PRVLI
Sbjct  181  LALLNASFRWHETRPLDQARTQRSVLPIFASPAFWVYTVGFSAGMGTFFVFFSTAPRVLI  240

Query  241  GKAGYSELQFSLAFATVAAVMIFTARFAKQFVFRWGTSGSLLRGMCMlllgaallaagqg  300
            G+AGYSE+ FSLAFATVA VM+ T+RFAK FV +WG +G + RGM +L+ GA LL+ GQ 
Sbjct  241  GQAGYSEIGFSLAFATVALVMVTTTRFAKSFVAKWGIAGCVARGMALLVSGAILLGIGQL  300

Query  301  lgTPSSWVFIAPMWVMAVGIVFTVSVTANGALKDFGDMAGSAVAVYFCVQSLIVATAGTL  360
            +G+PS   FI PMWV+AVGIVFTVSVTANGAL +F+D+AGSAVA YFC+QSLIV+  GTL
Sbjct  301  FGSPSFFSFILPMWVVAVGIVFTVSVTANGALAQFDDIAGSAVAFYFCIQSLIVSIVGTL  360

Query  361  LVIALPGDTAWPLAAYASIMA-----GIVLIARRQLHSGRQP  397
             V  L GDTAWP+  YA+ MA     G+ L+  R+  + + P
Sbjct  361  AVTLLNGDTAWPVICYATAMAVLVSLGLALLRSRDAATEKSP  402

24) AGROH133_13586 in NC_015508


> AY963803|10|G7|166865478|ABZ01840.1|Salmonella_enterica_subsp._enterica_SRC19|+|8118..9332|cmlA9|-|CmlA9 
chloramphenicol 
efflux protein
Length=404

 Score =  355 bits (1335),  Expect = 2e-99, Method: Compositional matrix adjust.
 Identities = 248/395 (63%), Positives = 324/395 (83%), Gaps = 0/395 (0%)

Query  1    MSIPTPVWGRSLLAAMLLMAPFDILASLAMDIYLPVVPIMPEAlgttpvvvqltltvYMV  60
            M+   P W+ +L AA+LLMAPFDILASLAMDIYLPVVP MP  L TTP ++QLTL++YMV
Sbjct  1    MTTTRPAWAYTLPAALLLMAPFDILASLAMDIYLPVVPAMPGVLNTTPSIIQLTLSLYMV  60

Query  61   MLGLGQIVFGPISDRIGRRPVLIGGALLFVVASFCLAAVTTASAFIVFRFLQSagaaaal  120
            MLG+GQ++FGP+SDR+GRRP+L+ GA  FV AS+  A  +TA AF+ FR++Q+ GA+A L
Sbjct  61   MLGVGQVIFGPLSDRVGRRPILLVGATAFVAASLGAACSSTALAFVAFRLVQAVGASAML  120

Query  121  vatfaTVRDVYADRPEATTIYGTFSSILAFVPALGPIVGAVIANEFGWRAIFVTLGaaaf  180
            VATFATVRDVYA+RPE++ IYG FSS+LAFVPALGPI GA+I++  GW+AIF+TL+A A 
Sbjct  121  VATFATVRDVYANRPEGAVIYGLFSSMLAFVPALGPIAGALIGEFWGWQAIFITLAALAS  180

Query  181  iatvaaGRNWSETRPATATMSRPSPLRMLGSGRFWTYTLGFSTAMGTFFVFFSTAPLVMI  240
            +A + A+  W ETRP   + ++ S L +++S  FW YT+GFS++MGTFFVFFSTAP V+I
Sbjct  181  LALLNASFRWHETRPLDQARTQRSVLPIFASPAFWVYTVGFSAGMGTFFVFFSTAPRVLI  240

Query  241  ARAGLSEVEFSLAFATVAIAMIVTTRFAKFFVARWGVQGSLVRGMALLLVGAFLFTAGEV  300
            ++AG SE+ FSLAFATVA+ M+ TTRFAK FVA+WG+ G + RGMALL+ GA+L+  G++
Sbjct  241  GQAGYSEIGFSLAFATVALVMVTTTRFAKSFVAKWGIAGCVARGMALLVSGAILLGIGQL  300

Query  301  GAVPSFLTFIVPMWVMAVGIVFTVSVTANGALEDFGHMAGTAVAFYFCIQSLFVGIAGTL  360
             + PSF++FI+PMWV+AVGIVFTVSVTANGAL +F+++AG+AVAFYFCIQSL+V+I GTL
Sbjct  301  FGSPSFFSFILPMWVVAVGIVFTVSVTANGALAQFDDIAGSAVAFYFCIQSLIVSIVGTL  360

Query  361  AVVILPGDAAWPVIAYSSIMACLVLTALYLLNRRN  395
            AV +L GD+AWPVI Y++ MA LV  +L LL  R+
Sbjct  361  AVTLLNGDTAWPVICYATAMAVLVSLGLALLRSRD  395

25) Mesci_3448 in NC_014923


> AY963803|10|G7|166865478|ABZ01840.1|Salmonella_enterica_subsp._enterica_SRC19|+|8118..9332|cmlA9|-|CmlA9 
chloramphenicol 
efflux protein
Length=404

 Score =  348 bits (1308),  Expect = 2e-97, Method: Compositional matrix adjust.
 Identities = 260/395 (66%), Positives = 333/395 (85%), Gaps = 0/395 (0%)

Query  4    PKNPTWTTSLPAAMVLMAPFDILASLAMDIYLPIVPAMPGILETSPDVIQLTLSLYMICL  63
               P+W+ +LPAA++LMAPFDILASLAMDIYLP+VPAMPG+L+T+P +IQLTLSLYM+ L
Sbjct  3    TTRPAWAYTLPAALLLMAPFDILASLAMDIYLPVVPAMPGVLNTTPSIIQLTLSLYMVML  62

Query  64   GLGQVVFGPISDRIGRRPVLIggallfsgasfllastslaavfvvlRVVQAIGASAILVA  123
            G+GQV+FGP+SDR+GRRP+L+ GA  F +AS+  A +S A  FV +R+VQA+GASA+LVA
Sbjct  63   GVGQVIFGPLSDRVGRRPILLVGATAFVAASLGAACSSTALAFVAFRLVQAVGASAMLVA  122

Query  124  TFATVRDVYAQRAESAVIYGLFSSMLAFVPALGPVAGALIADNFGWRAIFltlgvlataa  183
            TFATVRDVYA+R+E+AVIYGLFSSMLAFVPALGP+AGALI++  GW+AIF+TL+ LA+ A
Sbjct  123  TFATVRDVYANRPEGAVIYGLFSSMLAFVPALGPIAGALIGEFWGWQAIFITLAALASLA  182

Query  184  tlnaWPKWHETRPSNGDTRRMALRPILSSLAFWTYTLAFSAAMGAFFVFFSTAPRVLMDR  243
             LNA  +WHETRP +    + ++ PI++S AFW YT++FSA+MG+FFVFFSTAPRVL+++
Sbjct  183  LLNASFRWHETRPLDQARTQRSVLPIFASPAFWVYTVGFSAGMGTFFVFFSTAPRVLIGQ  242

Query  244  AGFSQFGFSLAFATAALVMIVTTRFARRFIASWGIAGSAIRGmamllfgaallavgqlfa  303
            AG+S++GFSLAFAT ALVM+ TTRFA+ F+A WGIAG   RGMA+L+ GA LL++GQLF+
Sbjct  243  AGYSEIGFSLAFATVALVMVTTTRFAKSFVAKWGIAGCVARGMALLVSGAILLGIGQLFG  302

Query  304  qPSFATFILPMWvvavgivfivsvTANGALEAFGDVAGTAVALYFCIQSLVVGIFGTLFV  363
             PSF +FILPMWVVAVGIVF VSVTANGAL  F+D+AG+AVA+YFCIQSL+V+I GTL V
Sbjct  303  SPSFFSFILPMWVVAVGIVFTVSVTANGALAQFDDIAGSAVAFYFCIQSLIVSIVGTLAV  362

Query  364  VLLGGDTAWPLVAYCSVMATLTLSALRHLQKRQTE  398
             LL GDTAWP++ Y + MA L   +L  L+ R++ 
Sbjct  363  TLLNGDTAWPVICYATAMAVLVSLGLALLRSRDAA  397

26) Bcenmc03_3862 in NC_010515


> AY963803|10|G7|166865478|ABZ01840.1|Salmonella_enterica_subsp._enterica_SRC19|+|8118..9332|cmlA9|-|CmlA9 
chloramphenicol 
efflux protein
Length=404

 Score =  342 bits (1284),  Expect = 2e-95, Method: Compositional matrix adjust.
 Identities = 232/396 (59%), Positives = 329/396 (84%), Gaps = 3/396 (0%)

Query  5    TRTTPAWAYSLPSALLLMAPFDLLASLAMDVYLPVVPEMPSALHTSPAMVQLTLSVYMVV  64
            T T PAWAY+LP+ALLLMAPFD+LASLAMD+YLPVVP MP+ L+T+P+++QLTLS+YMV+
Sbjct  2    TTTRPAWAYTLPAALLLMAPFDILASLAMDIYLPVVPAMPGVLNTTPSIIQLTLSLYMVM  61

Query  65   LGLGQLMFGPLSDRLGRRPvllggallfsvaslalamagsggvFVALRLLQALGASAALV  124
            LG+GQ++FGPLSDR+GRRP+LL GA  F  ASL+ A ++++  FVA+RL+QA+GASA LV
Sbjct  62   LGVGQVIFGPLSDRVGRRPILLVGATAFVAASLGAACSSTALAFVAFRLVQAVGASAMLV  121

Query  125  ATFATVRDVYADRPEGSTLYSQFGAILAFVPALGPMLGAGIAHGFGWRAIFMTLGGAGCL  184
            ATFATVRDVYA+RPEG+ +Y+ F+++LAFVPALGP+ GA I++  GW+AIF+TL++ + L
Sbjct  122  ATFATVRDVYANRPEGAVIYGLFSSMLAFVPALGPIAGALIGEFWGWQAIFITLAALASL  181

Query  185  AFYRALSRWHETRQQAGGKPRQSAVSILRSPSFLVYSLGFGTSMGAFFVFFSIAPRVLVG  244
            A+  A  RWHETR    ++ ++S ++I+ SP+F VY++GF+++MG+FFVFFS APRVL+G
Sbjct  182  ALLNASFRWHETRPLDQARTQRSVLPIFASPAFWVYTVGFSAGMGTFFVFFSTAPRVLIG  241

Query  245  QAGYSRTEFSVAFATVAIVMIGAARFARWFVSNWGIPGCFVRgagvmmagaialaactal  304
            QAGYS   FS+AFATVA+VM+ ++RFA+ FV++WGI+GC  RG +++++GAI L+    +
Sbjct  242  QAGYSEIGFSLAFATVALVMVTTTRFAKSFVAKWGIAGCVARGMALLVSGAILLGIGQLF  301

Query  305  maPSFVSFVMPMWIVAIGIVLMSSVTANGALRDFDDAAGTAVALYYCVQSLIVGGAGTFV  364
             +PSF SF++PMW+VA+GIV+  SVTANGAL +FDD AG+AVA+Y+C+QSLIV+  GT+ 
Sbjct  302  GSPSFFSFILPMWVVAVGIVFTVSVTANGALAQFDDIAGSAVAFYFCIQSLIVSIVGTLA  361

Query  365  TLVLPGDTPWPLAAFCFVTPTACVLALA-ALKRTRG  399
              +L GDT+WP+  +C+ T+ A +++L+ AL R+R+
Sbjct  362  VTLLNGDTAWPV--ICYATAMAVLVSLGLALLRSRD  395

27) RL1670 in NC_008380


> AY963803|10|G7|166865478|ABZ01840.1|Salmonella_enterica_subsp._enterica_SRC19|+|8118..9332|cmlA9|-|CmlA9 
chloramphenicol 
efflux protein
Length=404

 Score =  340 bits (1278),  Expect = 5e-95, Method: Compositional matrix adjust.
 Identities = 240/383 (63%), Positives = 323/383 (85%), Gaps = 4/383 (1%)

Query  7    QQWTYSLPAALLLMAPFDILASLAMDIYLPIVPVMPEALGTSPAVIQLTLSLYMLVLGVG  66
              W+Y+LPAALLLMAPFDILASLAMDIYLP+VP MP  L T+P++IQLTLSLYM++LGVG
Sbjct  6    PAWAYTLPAALLLMAPFDILASLAMDIYLPVVPAMPGVLNTTPSIIQLTLSLYMVMLGVG  65

Query  67   QIVFGPISDIVGRRPvllggaalfaassfllvgsssaPIFVVLRLLQAVGASATLVATFA  126
            Q++FGP+SD VGRRP+LL GA+ F A+S+    SS+A  FV +RL+QAVGASA LVATFA
Sbjct  66   QVIFGPLSDRVGRRPILLVGATAFVAASLGAACSSTALAFVAFRLVQAVGASAMLVATFA  125

Query  127  TVRDVYAGRPESSTIYSLLGSILSFVPALGPIIGALIADRFGWRAIFLVIGFLSVVALFN  186
            TVRDVYA RPE++ IY+L++S+L+FVPALGPI GALI++  GW+AIF+ ++ L+ +AL+N
Sbjct  126  TVRDVYANRPEGAVIYGLFSSMLAFVPALGPIAGALIGEFWGWQAIFITLAALASLALLN  185

Query  187  AGMRWHETRPAVTAKI--ALRPILTSLPFWVYTGGFSTAMGAFFVFFSTAPRILIDKAGF  244
            A+ RWHETRP   A+   ++ PI++S +FWVYT GFS++MG+FFVFFSTAPR+LI++AG+
Sbjct  186  ASFRWHETRPLDQARTQRSVLPIFASPAFWVYTVGFSAGMGTFFVFFSTAPRVLIGQAGY  245

Query  245  SGIAFSFIFATVALVMIVTARFAKRFVMRWGIAGSLARGMSMLLLGAVLLAFGELFLQPS  304
            S I+FS+ FATVALVM+ T+RFAK FV +WGIAG +ARGM++L+ GA+LL++G+LF  PS
Sbjct  246  SEIGFSLAFATVALVMVTTTRFAKSFVAKWGIAGCVARGMALLVSGAILLGIGQLFGSPS  305

Query  305  LVSFVVPMWiiaigivvatavtangaLDAFGDTAGTAVALYFCVQSIIVGFVGTSFVILL  364
            + SF++PMW++A+GIV + +VTANGAL  F+D AG+AVA+YFC+QS+IV++VGT  V LL
Sbjct  306  FFSFILPMWVVAVGIVFTVSVTANGALAQFDDIAGSAVAFYFCIQSLIVSIVGTLAVTLL  365

Query  365  GGDSARPLVGYVSATALTTLAGL  387
             GD+A+P++ Y  ATA++ L +L
Sbjct  366  NGDTAWPVICY--ATAMAVLVSL  386

28) Rleg2_1232 in NC_011369


> AY963803|10|G7|166865478|ABZ01840.1|Salmonella_enterica_subsp._enterica_SRC19|+|8118..9332|cmlA9|-|CmlA9 
chloramphenicol 
efflux protein
Length=404

 Score =  339 bits (1274),  Expect = 1e-94, Method: Compositional matrix adjust.
 Identities = 240/393 (62%), Positives = 331/393 (85%), Gaps = 5/393 (1%)

Query  7    PSWTYSVPATLLLMAPFDILASLAMDIYLPVVPTMPQALGTSPAVIQLTLSLYMLVLGVG  66
            P+W+Y++PA+LLLMAPFDILASLAMDIYLPVVP+MP  L T+P++IQLTLSLYM++LGVG
Sbjct  6    PAWAYTLPAALLLMAPFDILASLAMDIYLPVVPAMPGVLNTTPSIIQLTLSLYMVMLGVG  65

Query  67   QIVFGPISDIVGRRPVLLGGaalfavssfllaGTSSASLFMALRLLQAIGASAALVATFA  126
            Q++FGP+SD VGRRP+LL GA+ F  +S+  A +S+A  F+A+RL+QA+GASA LVATFA
Sbjct  66   QVIFGPLSDRVGRRPILLVGATAFVAASLGAACSSTALAFVAFRLVQAVGASAMLVATFA  125

Query  127  TVRDVYAERPESSVIYSLLGSMLSFVPAFGPIVGAVIADRYGWRAIFVIIGVLSVVAILN  186
            TVRDVYA+RPE++VIY+L++SML+FVPA+GPI GA+I++  GW+AIF+ ++ L+ +A+LN
Sbjct  126  TVRDVYANRPEGAVIYGLFSSMLAFVPALGPIAGALIGEFWGWQAIFITLAALASLALLN  185

Query  187  AGMRWHETRPAAATATISFRPILTSF---PFWVYTSGFSAAMGAFFVFFSTAPRILIDQs  243
            A+ RWHETRP   + T   R++L  F   +FWVYT GFSA+MG+FFVFFSTAPR+LI+Q+
Sbjct  186  ASFRWHETRPLDQARTQ--RSVLPIFASPAFWVYTVGFSAGMGTFFVFFSTAPRVLIGQA  243

Query  244  gfsgitfsfifasVALVMIVTARFAKGFVTRWGIagslargmamlllgavmlaagemFLQ  303
            G+S I FS+ FA+VALVM+ T+RFAK+FV++WGIAG +ARGMA+L+ GA++L+ G++F  
Sbjct  244  GYSEIGFSLAFATVALVMVTTTRFAKSFVAKWGIAGCVARGMALLVSGAILLGIGQLFGS  303

Query  304  APLIGFVLPMWIIAIGIVFATAVTANGALKAFDDTAGTAVALYFCIESLLVGVAGTLFVV  363
            +++++F+LPMW++A+GIVF+ +VTANGAL  FDD AG+AVA+YFCI+SL+V++ GTL V 
Sbjct  304  PSFFSFILPMWVVAVGIVFTVSVTANGALAQFDDIAGSAVAFYFCIQSLIVSIVGTLAVT  363

Query  364  LLDGDTAWPLAAYAAVTALITLAGLRRLSCKTA  396
            LL+GDTAWP+  YA+  A++   GL  L  + A
Sbjct  364  LLNGDTAWPVICYATAMAVLVSLGLALLRSRDA  396

29) Bcen_4704 in NC_008061


> AY963803|10|G7|166865478|ABZ01840.1|Salmonella_enterica_subsp._enterica_SRC19|+|8118..9332|cmlA9|-|CmlA9 
chloramphenicol 
efflux protein
Length=404

 Score =  339 bits (1273),  Expect = 1e-94, Method: Compositional matrix adjust.
 Identities = 229/396 (58%), Positives = 327/396 (83%), Gaps = 3/396 (0%)

Query  5    TRTTPAWAYSLPSALLLMAPFDLLASLAMDVYLPVVPEMPSALHTSPAMVQLTLSVYMVV  64
            T T PAWAY+LP+ALLLMAPFD+LASLAMD+YLPVVP MP+ L+T+P+++QLTLS+YMV+
Sbjct  2    TTTRPAWAYTLPAALLLMAPFDILASLAMDIYLPVVPAMPGVLNTTPSIIQLTLSLYMVM  61

Query  65   LGLGQLMFGPLSDRLGRRPvllggallfsvaslalamagsggvFVALRLLQALGASAALV  124
            LG+GQ++FGPLSDR+GRRP+LL GA  F  ASL+ A ++++  FVA+RL+QA+GASA LV
Sbjct  62   LGVGQVIFGPLSDRVGRRPILLVGATAFVAASLGAACSSTALAFVAFRLVQAVGASAMLV  121

Query  125  ATFATVRDVYADRPEGSTLYSQFGAILAFVPALGPMLGAGIAHGFGWRAIFMTLGGAGCL  184
            ATFATVRDVYA+RPEG+ +Y+ F+++LAFVPALGP+ GA I++  GW+AIF+TL++ + L
Sbjct  122  ATFATVRDVYANRPEGAVIYGLFSSMLAFVPALGPIAGALIGEFWGWQAIFITLAALASL  181

Query  185  AFYRALSRWHETRQQAGGKPRQSAVSILRSPSFLVYSLGFGTSMGAFFVFFSIAPRVLVG  244
            A+  A  RWHETR    ++ ++S ++I+ SP+F VY++GF+++MG+FFVFFS APRVL+G
Sbjct  182  ALLNASFRWHETRPLDQARTQRSVLPIFASPAFWVYTVGFSAGMGTFFVFFSTAPRVLIG  241

Query  245  QAGYSRTEFSVAFATVAIVMIGAARFARWFVSNWGGPGCFVRgagvmmagatalaactal  304
            QAGYS   FS+AFATVA+VM+ ++RFA+ FV++WG +GC  RG +++++GA  L+    +
Sbjct  242  QAGYSEIGFSLAFATVALVMVTTTRFAKSFVAKWGIAGCVARGMALLVSGAILLGIGQLF  301

Query  305  maPSFVSFVMPMWIVAIGIVLMSSVTANGALRDFDDAAGTAVALYYCVQSLIVGGAGTFV  364
             +PSF SF++PMW+VA+GIV+  SVTANGAL +FDD AG+AVA+Y+C+QSLIV+  GT+ 
Sbjct  302  GSPSFFSFILPMWVVAVGIVFTVSVTANGALAQFDDIAGSAVAFYFCIQSLIVSIVGTLA  361

Query  365  TLVLPGDTPWPLAAFCFVAPTACVLALA-ALKRTRG  399
              +L GDT+WP+  +C+ ++ A +++L+ AL R+R+
Sbjct  362  VTLLNGDTAWPV--ICYATAMAVLVSLGLALLRSRD  395

30) Bcen2424_3659 in NC_008543


> AY963803|10|G7|166865478|ABZ01840.1|Salmonella_enterica_subsp._enterica_SRC19|+|8118..9332|cmlA9|-|CmlA9 
chloramphenicol 
efflux protein
Length=404

 Score =  339 bits (1273),  Expect = 1e-94, Method: Compositional matrix adjust.
 Identities = 229/396 (58%), Positives = 327/396 (83%), Gaps = 3/396 (0%)

Query  5    TRTTPAWAYSLPSALLLMAPFDLLASLAMDVYLPVVPEMPSALHTSPAMVQLTLSVYMVV  64
            T T PAWAY+LP+ALLLMAPFD+LASLAMD+YLPVVP MP+ L+T+P+++QLTLS+YMV+
Sbjct  2    TTTRPAWAYTLPAALLLMAPFDILASLAMDIYLPVVPAMPGVLNTTPSIIQLTLSLYMVM  61

Query  65   LGLGQLMFGPLSDRLGRRPvllggallfsvaslalamagsggvFVALRLLQALGASAALV  124
            LG+GQ++FGPLSDR+GRRP+LL GA  F  ASL+ A ++++  FVA+RL+QA+GASA LV
Sbjct  62   LGVGQVIFGPLSDRVGRRPILLVGATAFVAASLGAACSSTALAFVAFRLVQAVGASAMLV  121

Query  125  ATFATVRDVYADRPEGSTLYSQFGAILAFVPALGPMLGAGIAHGFGWRAIFMTLGGAGCL  184
            ATFATVRDVYA+RPEG+ +Y+ F+++LAFVPALGP+ GA I++  GW+AIF+TL++ + L
Sbjct  122  ATFATVRDVYANRPEGAVIYGLFSSMLAFVPALGPIAGALIGEFWGWQAIFITLAALASL  181

Query  185  AFYRALSRWHETRQQAGGKPRQSAVSILRSPSFLVYSLGFGTSMGAFFVFFSIAPRVLVG  244
            A+  A  RWHETR    ++ ++S ++I+ SP+F VY++GF+++MG+FFVFFS APRVL+G
Sbjct  182  ALLNASFRWHETRPLDQARTQRSVLPIFASPAFWVYTVGFSAGMGTFFVFFSTAPRVLIG  241

Query  245  QAGYSRTEFSVAFATVAIVMIGAARFARWFVSNWGGPGCFVRgagvmmagatalaactal  304
            QAGYS   FS+AFATVA+VM+ ++RFA+ FV++WG +GC  RG +++++GA  L+    +
Sbjct  242  QAGYSEIGFSLAFATVALVMVTTTRFAKSFVAKWGIAGCVARGMALLVSGAILLGIGQLF  301

Query  305  maPSFVSFVMPMWIVAIGIVLMSSVTANGALRDFDDAAGTAVALYYCVQSLIVGGAGTFV  364
             +PSF SF++PMW+VA+GIV+  SVTANGAL +FDD AG+AVA+Y+C+QSLIV+  GT+ 
Sbjct  302  GSPSFFSFILPMWVVAVGIVFTVSVTANGALAQFDDIAGSAVAFYFCIQSLIVSIVGTLA  361

Query  365  TLVLPGDTPWPLAAFCFVAPTACVLALA-ALKRTRG  399
              +L GDT+WP+  +C+ ++ A +++L+ AL R+R+
Sbjct  362  VTLLNGDTAWPV--ICYATAMAVLVSLGLALLRSRD  395

31) floR in NC_007761


> AY963803|10|G7|166865478|ABZ01840.1|Salmonella_enterica_subsp._enterica_SRC19|+|8118..9332|cmlA9|-|CmlA9 
chloramphenicol 
efflux protein
Length=404

 Score =  337 bits (1263),  Expect = 8e-94, Method: Compositional matrix adjust.
 Identities = 220/363 (61%), Positives = 311/363 (86%), Gaps = 1/363 (0%)

Query  7    PSWNYSVPASLLLMAPFDILASLAMDIYLPVVPTMPQALGTSPEVIQLTLSLYMLVLGVG  66
            P+W Y++PA+LLLMAPFDILASLAMDIYLPVVP+MP  L T+P +IQLTLSLYM++LGVG
Sbjct  6    PAWAYTLPAALLLMAPFDILASLAMDIYLPVVPAMPGVLNTTPSIIQLTLSLYMVMLGVG  65

Query  67   QIVFGPISDIVGRRPvllggaalfalasfllagassallfvalRLLQAIGASAALVATFA  126
            Q++FGP+SD VGRRP+LL GA+ F  AS+  A +S+AL FVA+RL+QA+GASA LVATFA
Sbjct  66   QVIFGPLSDRVGRRPILLVGATAFVAASLGAACSSTALAFVAFRLVQAVGASAMLVATFA  125

Query  127  TVRDVYAERPESSVIYSLLGSLLSLVPAFGPVVGAVIADHYGWRAIFLIIGLLSIVAILN  186
            TVRDVYA+RPE++VIY+L++S+L++VPA+GP+ GA+I++  GW+AIF+ ++ L+ +A+LN
Sbjct  126  TVRDVYANRPEGAVIYGLFSSMLAFVPALGPIAGALIGEFWGWQAIFITLAALASLALLN  185

Query  187  AAMRWHEtrpatattaiairpiL-ASLPFWIYTTGFSAAMGAFFVFFSTAPRILIDRAGF  245
            A+ RWHETRP   + +      + AS +FW+YT GFSA+MG+FFVFFSTAPR+LI++AG+
Sbjct  186  ASFRWHETRPLDQARTQRSVLPIFASPAFWVYTVGFSAGMGTFFVFFSTAPRVLIGQAGY  245

Query  246  SGITFSFIFASVALVMIVTARFAKCFVTRWGIAGSLGRGMAILLVGAVMLATGEMFLRAP  305
            S I FS+ FA+VALVM+ T+RFAK FV++WGIAG ++RGMA+L+ GA++L+ G++F  ++
Sbjct  246  SEIGFSLAFATVALVMVTTTRFAKSFVAKWGIAGCVARGMALLVSGAILLGIGQLFGSPS  305

Query  306  LIGLILPMWIIAIGIVLATAVMANGALAAFGNTAGTAVALYFCVESLLVGVAGTLFVVLL  365
            ++++ILPMW++A+GIV++ +V ANGALA F++ AG+AVA+YFC++SL+V++ GTL V LL
Sbjct  306  FFSFILPMWVVAVGIVFTVSVTANGALAQFDDIAGSAVAFYFCIQSLIVSIVGTLAVTLL  365

Query  366  DGN  368
            +G+
Sbjct  366  NGD  368

32) Oant_1335 in NC_009667


> AY963803|10|G7|166865478|ABZ01840.1|Salmonella_enterica_subsp._enterica_SRC19|+|8118..9332|cmlA9|-|CmlA9 
chloramphenicol 
efflux protein
Length=404

 Score =  336 bits (1260),  Expect = 1e-93, Method: Compositional matrix adjust.
 Identities = 238/392 (61%), Positives = 303/392 (78%), Gaps = 0/392 (0%)

Query  5    NKQTPRWSYSLPFALALMAPFDILASLAMDIYLPVVPSMPAILQTTPAMVQLTLSLYMVM  64
                P W+Y+LP AL LMAPFDILASLAMDIYLPVVP+MP++L+TTP+++QLTLSLYMVM
Sbjct  2    TTTRPAWAYTLPAALLLMAPFDILASLAMDIYLPVVPAMPGVLNTTPSIIQLTLSLYMVM  61

Query  65   LGVGQLLFGPLSDRFGRRPILLGGGLVFALSSFTLAITDNAALFVALRFVQATGASAALV  124
            LGVGQ++FGPLSDR GRRPILL G+  F  +S+  A +  A  FVA+R+VQA GASA LV
Sbjct  62   LGVGQVIFGPLSDRVGRRPILLVGATAFVAASLGAACSSTALAFVAFRLVQAVGASAMLV  121

Query  125  ATFATVRDVYATRPEGATIYGLFSAMLSFVPALGPIAGALIAKGFGWRTIFALLGLFGLI  184
            ATFATVRDVYA RPEGA IYGLFS+ML+FVPALGPIAGALI+   GW++IF  L+ ++ +
Sbjct  122  ATFATVRDVYANRPEGAVIYGLFSSMLAFVPALGPIAGALIGEFWGWQAIFITLAALASL  181

Query  185  ATWRALRHWHETRPTGDAPNAGSLGRIIKDFRFWTYTLGFATAMGTFFVFFSTAPRILIE  244
            A   A  +WHETRP ++A    S+  I+    FW YT+GF+++MGTFFVFFSTAPR+LI 
Sbjct  182  ALLNASFRWHETRPLDQARTQRSVLPIFASPAFWVYTVGFSAGMGTFFVFFSTAPRVLIG  241

Query  245  RSGFGETEFSLAFASVAGVMIAATRILPRQTQKWGARTSvalgmvvllasallllagetl  304
            ++G++E  FSLAFA+VA VM+++TR+      KWG    VA GM +L+++A+LL  G+ +
Sbjct  242  QAGYSEIGFSLAFATVALVMVTTTRFAKSFVAKWGIAGCVARGMALLVSGAILLGIGQLF  301

Query  305  lQPSFTSLIVPMWLAAIGIVLTASMTANGALAAFDDNAGMAVAVYFCVQSLIVSLAGTAL  364
              PSF S+I+PMW+ A+GIV+T S+TANGALA FDD AG AVA YFC+QSLIVS+ GT  
Sbjct  302  GSPSFFSFILPMWVVAVGIVFTVSVTANGALAQFDDIAGSAVAFYFCIQSLIVSIVGTLA  361

Query  365  VIFLPGDTAWPLITFCTFMPLLVLAMLARLRK  396
            V +L GDTAWP+I + T M++LV   LA LR 
Sbjct  362  VTLLNGDTAWPVICYATAMAVLVSLGLALLRS  393

33) LILAB_20505 in NC_015711


> AY963803|10|G7|166865478|ABZ01840.1|Salmonella_enterica_subsp._enterica_SRC19|+|8118..9332|cmlA9|-|CmlA9 
chloramphenicol 
efflux protein
Length=404

 Score =  334 bits (1254),  Expect = 4e-93, Method: Compositional matrix adjust.
 Identities = 247/385 (65%), Positives = 323/385 (84%), Gaps = 0/385 (0%)

Query  1    MLMAPFDLLASLAMDIYLPAVPTLPGVLDTSPAIVQLTLSLYMAVLGLGQMVFGPISDRI  60
            +LMAPFD+LASLAMDIYLP VP++PGVL+T+P+I+QLTLSLYM +LG+GQ++FGP+SDR+
Sbjct  17   LLMAPFDILASLAMDIYLPVVPAMPGVLNTTPSIIQLTLSLYMVMLGVGQVIFGPLSDRV  76

Query  61   GRRRVLLTGALLFAVTSFQLALTSDAALFVGLRLLQAMGASAALVATFATVRDVYAERPE  120
            GRR +LL GA  F  +S+  A +S A  FV++RL+QA+GASA LVATFATVRDVYA+RPE
Sbjct  77   GRRPILLVGATAFVAASLGAACSSTALAFVAFRLVQAVGASAMLVATFATVRDVYANRPE  136

Query  121  SAVIYSLFSTLLAFVPALGPIAGALLMQRFGWRAIFITlgllsaaallralPRWHETRPP  180
            +AVIY+LFS++LAFVPALGPIAGAL+ +  GW+AIFITL+ L++ ALL A  RWHETRP 
Sbjct  137  GAVIYGLFSSMLAFVPALGPIAGALIGEFWGWQAIFITLAALASLALLNASFRWHETRPL  196

Query  181  QGLQRRPALRHLLSSAPFWTYTLGFSAAMGSFFVFFSTAPRVLIGQVGLSELEFSLAFAT  240
            +  + + ++  +++S++FW YT+GFSA+MG+FFVFFSTAPRVLIGQ G SE+ FSLAFAT
Sbjct  197  DQARTQRSVLPIFASPAFWVYTVGFSAGMGTFFVFFSTAPRVLIGQAGYSEIGFSLAFAT  256

Query  241  AALAMILTTRFAKRFVAEWGLAGSltrgmgllllgaalltagqlltaPSFWTFVAPMWLI  300
             AL M+ TTRFAK FVA WG+AG ++RGM+LL+ GA LL  GQL+ +PSF +F+ PMW++
Sbjct  257  VALVMVTTTRFAKSFVAKWGIAGCVARGMALLVSGAILLGIGQLFGSPSFFSFILPMWVV  316

Query  301  AAGIVFSVSVTANGALQAFGDVAGTAVALYFCIQSlivgllgtlmvvvlngDTAWPLVGY  360
            A GIVF+VSVTANGAL  F+D+AG+AVA+YFCIQSLIV+++GTL V +LNGDTAWP++ Y
Sbjct  317  AVGIVFTVSVTANGALAQFDDIAGSAVAFYFCIQSLIVSIVGTLAVTLLNGDTAWPVICY  376

Query  361  atlmalvtltalQRLRSRPGAQQEP  385
            AT MA++   +L  LRSR +A + +
Sbjct  377  ATAMAVLVSLGLALLRSRDAATEKS  401

34) REMIM1_CH01583 in NC_021905


> AY963803|10|G7|166865478|ABZ01840.1|Salmonella_enterica_subsp._enterica_SRC19|+|8118..9332|cmlA9|-|CmlA9 
chloramphenicol 
efflux protein
Length=404

 Score =  320 bits (1201),  Expect = 7e-89, Method: Compositional matrix adjust.
 Identities = 219/366 (60%), Positives = 311/366 (85%), Gaps = 1/366 (0%)

Query  4    SKIPSWNYSVPASLLLMAPFDILASLAMDIYLPVVPTMPQALGTSPEVIQLTLSLYMLVL  63
            +  P+W Y++PA+LLLMAPFDILASLAMDIYLPVVP+MP  L T+P +IQLTLSLYM++L
Sbjct  3    TTRPAWAYTLPAALLLMAPFDILASLAMDIYLPVVPAMPGVLNTTPSIIQLTLSLYMVML  62

Query  64   GVGQIVFGPISDIVGRRPvllggaalfalasfllagassallfvalRLLQAIGASAALVA  123
            GVGQ++FGP+SD VGRRP+LL GA+ F  AS+  A +S+AL FVA+RL+QA+GASA LVA
Sbjct  63   GVGQVIFGPLSDRVGRRPILLVGATAFVAASLGAACSSTALAFVAFRLVQAVGASAMLVA  122

Query  124  TFATVRDVYAERPESSVIYSLLGSLLSLVPAFGPVVGAVIADHYGWRAIFLIIGLLSIVA  183
            TFATVRDVYA+RPE++VIY+L++S+L++VPA+GP+ GA+I++  GW+AIF+ ++ L+ +A
Sbjct  123  TFATVRDVYANRPEGAVIYGLFSSMLAFVPALGPIAGALIGEFWGWQAIFITLAALASLA  182

Query  184  ILNAAMRWHEtrlatattaiairpilaSLP-FWIYTTGFSAAMGAFFVFFSTAPRILIDR  242
            +LNA+ RWHETR    + +      + + P FW+YT GFSA+MG+FFVFFSTAPR+LI++
Sbjct  183  LLNASFRWHETRPLDQARTQRSVLPIFASPAFWVYTVGFSAGMGTFFVFFSTAPRVLIGQ  242

Query  243  AGFSGITFSFIFASVALVMIVTARFAKCFVTRWGIAGSLGRGMAILLVGAVMLATGEMFL  302
            AG+S I FS+ FA+VALVM+ T+RFAK FV++WGIAG ++RGMA+L+ GA++L+ G++F 
Sbjct  243  AGYSEIGFSLAFATVALVMVTTTRFAKSFVAKWGIAGCVARGMALLVSGAILLGIGQLFG  302

Query  303  RAPLIGLILPMWIIAIGIvlatavtangalaaFGNTAGTAVALYFCVESLLVGVAGTLFV  362
             ++++++ILPMW++A+GIV++ +VTANGALA F++ AG+AVA+YFC++SL+V++ GTL V
Sbjct  303  SPSFFSFILPMWVVAVGIVFTVSVTANGALAQFDDIAGSAVAFYFCIQSLIVSIVGTLAV  362

Query  363  VLLDGN  368
             LL+G+
Sbjct  363  TLLNGD  368

35) cmlA in NC_017030


> AY963803|10|G7|166865478|ABZ01840.1|Salmonella_enterica_subsp._enterica_SRC19|+|8118..9332|cmlA9|-|CmlA9 
chloramphenicol 
efflux protein
Length=404

 Score =  316 bits (1183),  Expect = 2e-87, Method: Compositional matrix adjust.
 Identities = 260/388 (68%), Positives = 328/388 (85%), Gaps = 2/388 (0%)

Query  1    MSDPKALSWNHTVPAALLLMAPFDLLASLAMDIYLPVVPAMTGVLGTSPSIIQLTLSLYM  60
            M+  ++ +W  T+PAALLLMAPFD+LASLAMDIYLPVVPAM GVL T+PSIIQLTLSLYM
Sbjct  1    MTTTRP-AWAYTLPAALLLMAPFDILASLAMDIYLPVVPAMPGVLNTTPSIIQLTLSLYM  59

Query  61   AILGAGQLVFGPLSDRIGRRRVLLGGAWVFATTSFLLAGTTDAAMFVGLRLLQAVGASAA  120
             +LG GQ++FGPLSDR+GRR +LL GA  F ++S+  A ++ A  FV++RL+QAVGASA 
Sbjct  60   VMLGVGQVIFGPLSDRVGRRPILLVGATAFVAASLGAACSSTALAFVAFRLVQAVGASAM  119

Query  121  LVATFATVRDVYAERPEGTVIYSLFSAILAFVpalgpiagallaRHFGWRalfvtlgvla  180
            LVATFATVRDVYA+RPEG+VIY+LFS++LAFVPALGPIAGAL++   GW+A+F+TL+ LA
Sbjct  120  LVATFATVRDVYANRPEGAVIYGLFSSMLAFVPALGPIAGALIGEFWGWQAIFITLAALA  179

Query  181  taallqalPRWPETRPSGVARQTVSVQHILRSGAFWTYTLGFSAAMGSFFVFFSTAPRVL  240
            + ALL+A  RW ETRP + AR   SV  I+ S AFW YT+GFSA+MG+FFVFFSTAPRVL
Sbjct  180  SLALLNASFRWHETRPLDQARTQRSVLPIFASPAFWVYTVGFSAGMGTFFVFFSTAPRVL  239

Query  241  MGRAGFSELGFSLAFATAALAMMVTTRFAKHLVARWglagslargmlllllgavlltagq  300
            +G+AG+SE+GFSLAFAT AL M+ TTRFAK +VA+WG+AG +ARGM LL+ GA+LL  GQ
Sbjct  240  IGQAGYSEIGFSLAFATVALVMVTTTRFAKSFVAKWGIAGCVARGMALLVSGAILLGIGQ  299

Query  301  lltaPSFWTFVVPMWVIAAGIVFAVSVTANGALQAFGAVAGTAVALYFCIQSlvvavvgt  360
            L+ +PSF +F++PMWV+A GIVF+VSVTANGAL  F+ +AG+AVA+YFCIQSL+V++VGT
Sbjct  300  LFGSPSFFSFILPMWVVAVGIVFTVSVTANGALAQFDDIAGSAVAFYFCIQSLIVSIVGT  359

Query  361  lmvvllDGDTAWPLVGYASLMAG-VTLG  387
            L V LL+GDTAWP++ YA+ MA  V+LG
Sbjct  360  LAVTLLNGDTAWPVICYATAMAVLVSLG  387

36) Rleg_1320 in NC_012850


> AY963803|10|G7|166865478|ABZ01840.1|Salmonella_enterica_subsp._enterica_SRC19|+|8118..9332|cmlA9|-|CmlA9 
chloramphenicol 
efflux protein
Length=404

 Score =  306 bits (1148),  Expect = 1e-84, Method: Compositional matrix adjust.
 Identities = 239/384 (63%), Positives = 321/384 (84%), Gaps = 6/384 (1%)

Query  7    QQWTYSLPAALLLMAPFDILASLAMDIYLPIVPVMPEALGTSPAVIQLTLSLYMLVLGVG  66
              W+Y+LPAALLLMAPFDILASLAMDIYLP+VP MP  L T+P++IQLTLSLYM++LGVG
Sbjct  6    PAWAYTLPAALLLMAPFDILASLAMDIYLPVVPAMPGVLNTTPSIIQLTLSLYMVMLGVG  65

Query  67   QIVFGPISDIIGRRPVllggaalfaassfllagsssaPVFVVLRLLQAVGASATLVATFA  126
            Q++FGP+SD +GRRP+LL GA+ F A+S+  A SS+A  FV +RL+QAVGASA LVATFA
Sbjct  66   QVIFGPLSDRVGRRPILLVGATAFVAASLGAACSSTALAFVAFRLVQAVGASAMLVATFA  125

Query  127  TVRDVYAGRPESSTIYSLLGSILSFVpalgpiigaaiaDRFGWRAIFLVIGLLSVAALFN  186
            TVRDVYA RPE++ IY+L++S+L+FVPALGPI GA I++  GW+AIF+ ++ L+  AL+N
Sbjct  126  TVRDVYANRPEGAVIYGLFSSMLAFVPALGPIAGALIGEFWGWQAIFITLAALASLALLN  185

Query  187  AGMRWHETRPAVTAKIALRAILR---SLPFWVYAGGFSTAMGAFFVFFSTAPRILIDKAG  243
            A+ RWHETRP   A+   R++L    S +FWVY+ GFS++MG+FFVFFSTAPR+LI++AG
Sbjct  186  ASFRWHETRPLDQARTQ-RSVLPIFASPAFWVYTVGFSAGMGTFFVFFSTAPRVLIGQAG  244

Query  244  FSGIAFSFIFATVALVMIVTARFAKGFVMRWGIAGSLARGMAILLLGAVLLAFGElfllp  303
            +S I+FS+ FATVALVM+ T+RFAK+FV +WGIAG +ARGMA+L+ GA+LL++G+LF  P
Sbjct  245  YSEIGFSLAFATVALVMVTTTRFAKSFVAKWGIAGCVARGMALLVSGAILLGIGQLFGSP  304

Query  304  slvsfvvpMWiiaigivvatavtangaLDAFGDTAGTAVALYFCVQSIIVGFAGTFFVIL  363
            S+ SF++PMW++A+GIV + +VTANGAL  F+D AG+AVA+YFC+QS+IV++ GT+ V L
Sbjct  305  SFFSFILPMWVVAVGIVFTVSVTANGALAQFDDIAGSAVAFYFCIQSLIVSIVGTLAVTL  364

Query  364  LGGDSAWPLVGYVSATALTTLAGL  387
            L GD+AWP++ Y  ATA++ L +L
Sbjct  365  LNGDTAWPVICY--ATAMAVLVSL  386

37) XNC1_4570 in NC_014228


> AY963803|10|G7|166865478|ABZ01840.1|Salmonella_enterica_subsp._enterica_SRC19|+|8118..9332|cmlA9|-|CmlA9 
chloramphenicol 
efflux protein
Length=404

 Score =  304 bits (1141),  Expect = 3e-84, Method: Compositional matrix adjust.
 Identities = 207/372 (56%), Positives = 302/372 (82%), Gaps = 0/372 (0%)

Query  7    PPWGYSLPAALALMVPFDLLASLAMDVYLPVVPHMPADlntstlvvqlslslyililglg  66
            P+W+Y+LPAAL LM PFD+LASLAMD+YLPVVP MP+ LNT+  ++QL+LSLY+++LG+G
Sbjct  6    PAWAYTLPAALLLMAPFDILASLAMDIYLPVVPAMPGVLNTTPSIIQLTLSLYMVMLGVG  65

Query  67   qlIFGPLSDRIGRRPVVLGGAAAFTMTSFCIAMVNRGDLFLALRVIQALGASAALVGVFS  126
            Q+IFGPLSDR+GRRP++L GA+AF  +S+  A  + +  F+A+R++QA+GASA LV+ F+
Sbjct  66   QVIFGPLSDRVGRRPILLVGATAFVAASLGAACSSTALAFVAFRLVQAVGASAMLVATFA  125

Query  127  TIRDVYGNRPESSTIYGLLSSILAFVPAIGPIIGATLAVNWGWRSIFYMlglagllsllR  186
            T+RDVY+NRPE++ IYGL+SS+LAFVPA+GPI GA ++  WGW++IF  L+  + L+LL 
Sbjct  126  TVRDVYANRPEGAVIYGLFSSMLAFVPALGPIAGALIGEFWGWQAIFITLAALASLALLN  185

Query  187  AWPKWHETRWCSIKASESTFASILASSSFWVYTLGFSTAMGSFFVFFSIAPRVLIEGAGF  246
            A  +WHETR      ++ +  +I+AS++FWVYT+GFS++MG+FFVFFS APRVLI  AG+
Sbjct  186  ASFRWHETRPLDQARTQRSVLPIFASPAFWVYTVGFSAGMGTFFVFFSTAPRVLIGQAGY  245

Query  247  SQLGFSFTFSTVAVIMIITARFSGWFVGRWGIQGCFVRGTTLIALGSGILAVCSVLGEPQ  306
            S++GFS++F+TVA++M+ T+RF+  FV++WGI GC  RG +L+  G+ +L++  ++G P 
Sbjct  246  SEIGFSLAFATVALVMVTTTRFAKSFVAKWGIAGCVARGMALLVSGAILLGIGQLFGSPS  305

Query  307  FATFVVPMWVIAVGIVMLVSITANGALREFDDMAGTAVALYFGVQGLVVSGIGTGMVLVF  366
            F +F++PMWV+AVGIV  VS+TANGAL +FDD+AG+AVA+YF +Q+L+VS +GT  V ++
Sbjct  306  FFSFILPMWVVAVGIVFTVSVTANGALAQFDDIAGSAVAFYFCIQSLIVSIVGTLAVTLL  365

Query  367  GNDNPWSLIFYA  378
              D +W++I YA
Sbjct  366  NGDTAWPVICYA  377

38) Smal_3550 in NC_011071


> AY963803|10|G7|166865478|ABZ01840.1|Salmonella_enterica_subsp._enterica_SRC19|+|8118..9332|cmlA9|-|CmlA9 
chloramphenicol 
efflux protein
Length=404

 Score =  301 bits (1126),  Expect = 5e-83, Method: Compositional matrix adjust.
 Identities = 217/366 (60%), Positives = 292/366 (80%), Gaps = 1/366 (0%)

Query  7    PRWAHSLASAIVLMAPFDLLASLAMDIYLPVVPAMPRALGTSPVLVQLTLSAYllvlgvg  66
            P WA +L++A++LMAPFD+LASLAMDIYLPVVPAMP  L T+P ++QLTLS Y+++LGVG
Sbjct  6    PAWAYTLPAALLLMAPFDILASLAMDIYLPVVPAMPGVLNTTPSIIQLTLSLYMVMLGVG  65

Query  67   qlvfgplSDRIGRRPVLLLGALLFTVasialaasgsgaaflaWRTVQAIGASAALVATFA  126
            Q++FGPLSDR+GRRP+LL+GA  F  AS++ A S+++ AF+A R VQA+GASA LVATFA
Sbjct  66   QVIFGPLSDRVGRRPILLVGATAFVAASLGAACSSTALAFVAFRLVQAVGASAMLVATFA  125

Query  127  TVRDVYADTPEGASLYGLFASMLAFVPALGPILGALVAGAFGWRAIFallgvlgliaglr  186
            TVRDVYA+ PEGA +YGLF+SMLAFVPALGPI GAL++   GW+AIF  L+ L+ +A L 
Sbjct  126  TVRDVYANRPEGAVIYGLFSSMLAFVPALGPIAGALIGEFWGWQAIFITLAALASLALLN  185

Query  187  aQRHWQETRPPRSDAPGPVLQRILRSGGFWVYTLGFSAGMGTFFVFFSIAPRILVGRMQY  246
            A  +W+ETRP         +  I+ S +FWVYT+GFSAGMGTFFVFFS APR+L+G+  Y
Sbjct  186  ASFRWHETRPLDQARTQRSVLPIFASPAFWVYTVGFSAGMGTFFVFFSTAPRVLIGQAGY  245

Query  247  SPLSFGLAFATVALVMIFSARLAKRLIARWQVRGTFLRGLWVMIGGALLMALATLW-PPS  305
            S ++F+LAFATVALVM+ ++R+AK ++A+W + G   RG+ ++++GA+L++++ L  +PS
Sbjct  246  SEIGFSLAFATVALVMVTTTRFAKSFVAKWGIAGCVARGMALLVSGAILLGIGQLFGSPS  305

Query  306  FASVVLPMWAIAVGLVMVVSVAANGALRDFADASGMAVALYYALQSVIVAGVGTLATVLL  365
            F S +LPMW +AVG+V  VSV+ANGAL +F D +G AVA+Y+ +QS+IV+ VGTLA  LL
Sbjct  306  FFSFILPMWVVAVGIVFTVSVTANGALAQFDDIAGSAVAFYFCIQSLIVSIVGTLAVTLL  365

Query  366  PGDTVW  371
             GDT W
Sbjct  366  NGDTAW  371

39) SCE1572_04945 in NC_021658


> AY963803|10|G7|166865478|ABZ01840.1|Salmonella_enterica_subsp._enterica_SRC19|+|8118..9332|cmlA9|-|CmlA9 
chloramphenicol 
efflux protein
Length=404

 Score =  293 bits (1097),  Expect = 1e-80, Method: Compositional matrix adjust.
 Identities = 231/363 (64%), Positives = 312/363 (86%), Gaps = 0/363 (0%)

Query  1    MAPFDLLASLAMDVYLPVVPSMPGILGTSPSVVQLTLSLYMVVLGAGQLVFGPISDRVGR  60
            MAPFD+LASLAMD+YLPVVP+MPG+L T+PS++QLTLSLYMV+LG GQ++FGP+SDRVGR
Sbjct  19   MAPFDILASLAMDIYLPVVPAMPGVLNTTPSIIQLTLSLYMVMLGVGQVIFGPLSDRVGR  78

Query  61   RPvllggavlfaaaSYLLAGAESAAAFvalrvvqalgaaaalvatfatvRDVYAERAEGA  120
            RP+LL GA  F AAS   A + +A AFVA+R+VQA+GA+A LVATFATVRDVYA+R+EGA
Sbjct  79   RPILLVGATAFVAASLGAACSSTALAFVAFRLVQAVGASAMLVATFATVRDVYANRPEGA  138

Query  121  VIYSLFGSMLAFVPALGPVIGALLADHLGWRAIFValgaaataaalnaaPRWRETRPVNA  180
            VIY+LF+SMLAFVPALGP+ GAL+++  GW+AIF++L+A A+ A LNA+ RW+ETRP++ 
Sbjct  139  VIYGLFSSMLAFVPALGPIAGALIGEFWGWQAIFITLAALASLALLNASFRWHETRPLDQ  198

Query  181  SRPRAAFGEILTDASFWTYTLGFSAAMGAFFVFFSTVSRVLIDRAGFSQLTFSLLFATVA  240
            +R + +   I++ ++FW YT+GFSA+MG+FFVFFST +RVLI++AG+S++ FSL FATVA
Sbjct  199  ARTQRSVLPIFASPAFWVYTVGFSAGMGTFFVFFSTAPRVLIGQAGYSEIGFSLAFATVA  258

Query  241  LVMIATTRFAKRFVARWGRAGSLVRgmgmlllgaallavgqgiaaPSFWTFVPPMWIIAI  300
            LVM++TTRFAK FVA+WG AG + RGM++L+ GA LL++GQ +++PSF +F+ PMW++A+
Sbjct  259  LVMVTTTRFAKSFVAKWGIAGCVARGMALLVSGAILLGIGQLFGSPSFFSFILPMWVVAV  318

Query  301  GIVFANSVAANGALQRFGHVAGTATALYYCIESlvvgivgttlvvllPGDTAWPLSAYCT  360
            GIVF+ SV+ANGAL +F+++AG+A A+Y+CI+SL+V+IVGT  V LL GDTAWP+  Y T
Sbjct  319  GIVFTVSVTANGALAQFDDIAGSAVAFYFCIQSLIVSIVGTLAVTLLNGDTAWPVICYAT  378

Query  361  LMA  363
             MA
Sbjct  379  AMA  381

40) Bcep18194_B2449 in NC_007511


> AY963803|10|G7|166865478|ABZ01840.1|Salmonella_enterica_subsp._enterica_SRC19|+|8118..9332|cmlA9|-|CmlA9 
chloramphenicol 
efflux protein
Length=404

 Score =  277 bits (1035),  Expect = 9e-76, Method: Compositional matrix adjust.
 Identities = 232/398 (59%), Positives = 320/398 (81%), Gaps = 3/398 (0%)

Query  5    STPVWAYSLPSALLLMAPFDLLASLAMDVYLPVIPEMPSALGTSPAIVQLTLSVYMVVLG  64
            + P WAY+LP+ALLLMAPFD+LASLAMD+YLPV+P MP+ L T+P+I+QLTLS+YMV+LG
Sbjct  4    TRPAWAYTLPAALLLMAPFDILASLAMDIYLPVVPAMPGVLNTTPSIIQLTLSLYMVMLG  63

Query  65   LGQMIFGPLSDRVGRRPVVlggalcfaaaslalaiatggglFVALRVLQALGASAALVAT  124
            +GQ+IFGPLSDRVGRRP++L GA  F AASL+ A ++ +  FVA+R++QA+GASA LVAT
Sbjct  64   VGQVIFGPLSDRVGRRPILLVGATAFVAASLGAACSSTALAFVAFRLVQAVGASAMLVAT  123

Query  125  FATVRDVYADRPEGRMIYSQFGAMlafvpalgpllgaaiataCGWRAIFATlgllgllAC  184
            FATVRDVYA+RPEG +IY+ F++MLAFVPALGP+ GA I+   GW+AIF TL+ L+ LA 
Sbjct  124  FATVRDVYANRPEGAVIYGLFSSMLAFVPALGPIAGALIGEFWGWQAIFITLAALASLAL  183

Query  185  GRAWPRWHETRPRTANRQGLSVATILGSRPFQVHTLafaaamgaffvffSTAPRVLVGGA  244
              A  RWHETRP    R   SV  I++S +F V T++F+A+MG+FFVFFSTAPRVL+G A
Sbjct  184  LNASFRWHETRPLDQARTQRSVLPIFASPAFWVYTVGFSAGMGTFFVFFSTAPRVLIGQA  243

Query  245  GYSREAFSVAFATVAIVMVVVSRFAGTCVSRWGEAGCVARGALTMMTGAIVLAVCTVLAK  304
            GYS  +FS+AFATVA+VMV  +RFA + V++WG AGCVARG   +++GAI+L++  +++ 
Sbjct  244  GYSEIGFSLAFATVALVMVTTTRFAKSFVAKWGIAGCVARGMALLVSGAILLGIGQLFGS  303

Query  305  PSFATFVMPMWLVAVGIVLMSSVSANGALRDFgaaagkavalyyavQGMIVTGVGTLATL  364
            PSF +F++PMW+VAVGIV+  SV+ANGAL +F+  AG AVA+Y+ +Q++IV+ VGTLA  
Sbjct  304  PSFFSFILPMWVVAVGIVFTVSVTANGALAQFDDIAGSAVAFYFCIQSLIVSIVGTLAVT  363

Query  365  VFDGATAWPLVACCFGMGLASFVAIT-ALTRATGRACD  401
            +++G TAWP++  C++ ++A +V++  AL R+ + A +
Sbjct  364  LLNGDTAWPVI--CYATAMAVLVSLGLALLRSRDAATE  399

41) cmlA in NC_010410


> AY963803|10|G7|166865478|ABZ01840.1|Salmonella_enterica_subsp._enterica_SRC19|+|8118..9332|cmlA9|-|CmlA9 
chloramphenicol 
efflux protein
Length=404

 Score =  233 bits (869),  Expect = 1e-62, Method: Compositional matrix adjust.
 Identities = 202/409 (50%), Positives = 309/409 (76%), Gaps = 9/409 (2%)

Query  1    MRSKNFSWRYSLAATVlllspfdllaslGMDMYLPAVPFMPNALGttastiqltlttYLV  60
            M +   +W Y+L+A++LL++PFD+LASL+MD+YLP VP MP  L TT+S IQLTL+ Y+V
Sbjct  1    MTTTRPAWAYTLPAALLLMAPFDILASLAMDIYLPVVPAMPGVLNTTPSIIQLTLSLYMV  60

Query  61   MIGAGQLLFGPLSDrlgrrpvllggglAYVVASMGLALTSSAEVFLGLRILQACGASACL  120
            M+G GQ++FGPLSDR+GRRP+LL G+ A+V AS+G A +S+A  F+++R++QA GASA L
Sbjct  61   MLGVGQVIFGPLSDRVGRRPILLVGATAFVAASLGAACSSTALAFVAFRLVQAVGASAML  120

Query  121  VSTFATVRDIYAGREESNVIYGILGSMLAMVPAVGPLLGALV-DMWLGWRAIF-AFLGLG  178
            V+TFATVRD+YA R E+ VIYG+++SMLA VPA+GP+ GAL+ + W GW+AIF ++ +L+
Sbjct  121  VATFATVRDVYANRPEGAVIYGLFSSMLAFVPALGPIAGALIGEFW-GWQAIFITLAALA  179

Query  179  MIAASAAAWRFWPETRVQRVAGLQWSQLLLPV-KCLNFWLYTLCYAAGMGSFFVFFSIAP  237
             +A   A+ R W ETR    A  Q+S  +LP+     FW+YT+ ++AGMG+FFVFFS AP
Sbjct  180  SLALLNASFR-WHETRPLDQARTQRS--VLPIFASPAFWVYTVGFSAGMGTFFVFFSTAP  236

Query  238  GLMMGRQGVSQLGFSLLFATVAIAMVFTARFMGRVIPKWGSPSVLRMGMGCLIAGAVLLA  297
             +++G+ G S++GFSL FATVA+ MV T+RF    ++KWG ++ +  GM+ L++GA+LL+
Sbjct  237  RVLIGQAGYSEIGFSLAFATVALVMVTTTRFAKSFVAKWGIAGCVARGMALLVSGAILLG  296

Query  298  ITEIWASQSVLGFIAPMWLVGIGVATAVSVSPNGALRGFDHVAGTVTAVYFClggvllgs  357
            I ++ +S S ++FI PMW+V++G+  +VSV++NGAL  FD++AG+  A YFC+ +++++ 
Sbjct  297  IGQLFGSPSFFSFILPMWVVAVGIVFTVSVTANGALAQFDDIAGSAVAFYFCIQSLIVSI  356

Query  358  igtliisllPRNTAWPVVVYCLTLATVV-LGLSCVSRVKGSRGQGEHDV  405
            +GTL ++LL  +TAWPV+ Y  ++A +V LGL+ + R +++  +    V
Sbjct  357  VGTLAVTLLNGDTAWPVICYATAMAVLVSLGLA-LLRSRDAATEKSPVV  404

42) cmlA1 in NC_017645


> AY963803|10|G7|166865478|ABZ01840.1|Salmonella_enterica_subsp._enterica_SRC19|+|8118..9332|cmlA9|-|CmlA9 
chloramphenicol 
efflux protein
Length=404

 Score =  233 bits (869),  Expect = 1e-62, Method: Compositional matrix adjust.
 Identities = 202/409 (50%), Positives = 309/409 (76%), Gaps = 9/409 (2%)

Query  1    MRSKNFSWRYSLAATVlllspfdllaslGMDMYLPAVPFMPNALGttastiqltlttYLV  60
            M +   +W Y+L+A++LL++PFD+LASL+MD+YLP VP MP  L TT+S IQLTL+ Y+V
Sbjct  1    MTTTRPAWAYTLPAALLLMAPFDILASLAMDIYLPVVPAMPGVLNTTPSIIQLTLSLYMV  60

Query  61   MIGAGQLLFGPLSDrlgrrpvllggglAYVVASMGLALTSSAEVFLGLRILQACGASACL  120
            M+G GQ++FGPLSDR+GRRP+LL G+ A+V AS+G A +S+A  F+++R++QA GASA L
Sbjct  61   MLGVGQVIFGPLSDRVGRRPILLVGATAFVAASLGAACSSTALAFVAFRLVQAVGASAML  120

Query  121  VSTFATVRDIYAGREESNVIYGILGSMLAMVPAVGPLLGALV-DMWLGWRAIF-AFLGLG  178
            V+TFATVRD+YA R E+ VIYG+++SMLA VPA+GP+ GAL+ + W GW+AIF ++ +L+
Sbjct  121  VATFATVRDVYANRPEGAVIYGLFSSMLAFVPALGPIAGALIGEFW-GWQAIFITLAALA  179

Query  179  MIAASAAAWRFWPETRVQRVAGLQWSQLLLPV-KCLNFWLYTLCYAAGMGSFFVFFSIAP  237
             +A   A+ R W ETR    A  Q+S  +LP+     FW+YT+ ++AGMG+FFVFFS AP
Sbjct  180  SLALLNASFR-WHETRPLDQARTQRS--VLPIFASPAFWVYTVGFSAGMGTFFVFFSTAP  236

Query  238  GLMMGRQGVSQLGFSLLFATVAIAMVFTARFMGRVIPKWGSPSVLRMGMGCLIAGAVLLA  297
             +++G+ G S++GFSL FATVA+ MV T+RF    ++KWG ++ +  GM+ L++GA+LL+
Sbjct  237  RVLIGQAGYSEIGFSLAFATVALVMVTTTRFAKSFVAKWGIAGCVARGMALLVSGAILLG  296

Query  298  ITEIWASQSVLGFIAPMWLVGIGVATAVSVSPNGALRGFDHVAGTVTAVYFClggvllgs  357
            I ++ +S S ++FI PMW+V++G+  +VSV++NGAL  FD++AG+  A YFC+ +++++ 
Sbjct  297  IGQLFGSPSFFSFILPMWVVAVGIVFTVSVTANGALAQFDDIAGSAVAFYFCIQSLIVSI  356

Query  358  igtliisllPRNTAWPVVVYCLTLATVV-LGLSCVSRVKGSRGQGEHDV  405
            +GTL ++LL  +TAWPV+ Y  ++A +V LGL+ + R +++  +    V
Sbjct  357  VGTLAVTLLNGDTAWPVICYATAMAVLVSLGLA-LLRSRDAATEKSPVV  404

43) B479_26979 in NC_019906


> AY963803|10|G7|166865478|ABZ01840.1|Salmonella_enterica_subsp._enterica_SRC19|+|8118..9332|cmlA9|-|CmlA9 
chloramphenicol 
efflux protein
Length=404

 Score =  233 bits (869),  Expect = 1e-62, Method: Compositional matrix adjust.
 Identities = 202/409 (50%), Positives = 309/409 (76%), Gaps = 9/409 (2%)

Query  1    MRSKNFSWRYSLAATVlllspfdllaslGMDMYLPAVPFMPNALGttastiqltlttYLV  60
            M +   +W Y+L+A++LL++PFD+LASL+MD+YLP VP MP  L TT+S IQLTL+ Y+V
Sbjct  1    MTTTRPAWAYTLPAALLLMAPFDILASLAMDIYLPVVPAMPGVLNTTPSIIQLTLSLYMV  60

Query  61   MIGAGQLLFGPLSDrlgrrpvllggglAYVVASMGLALTSSAEVFLGLRILQACGASACL  120
            M+G GQ++FGPLSDR+GRRP+LL G+ A+V AS+G A +S+A  F+++R++QA GASA L
Sbjct  61   MLGVGQVIFGPLSDRVGRRPILLVGATAFVAASLGAACSSTALAFVAFRLVQAVGASAML  120

Query  121  VSTFATVRDIYAGREESNVIYGILGSMLAMVPAVGPLLGALV-DMWLGWRAIF-AFLGLG  178
            V+TFATVRD+YA R E+ VIYG+++SMLA VPA+GP+ GAL+ + W GW+AIF ++ +L+
Sbjct  121  VATFATVRDVYANRPEGAVIYGLFSSMLAFVPALGPIAGALIGEFW-GWQAIFITLAALA  179

Query  179  MIAASAAAWRFWPETRVQRVAGLQWSQLLLPV-KCLNFWLYTLCYAAGMGSFFVFFSIAP  237
             +A   A+ R W ETR    A  Q+S  +LP+     FW+YT+ ++AGMG+FFVFFS AP
Sbjct  180  SLALLNASFR-WHETRPLDQARTQRS--VLPIFASPAFWVYTVGFSAGMGTFFVFFSTAP  236

Query  238  GLMMGRQGVSQLGFSLLFATVAIAMVFTARFMGRVIPKWGSPSVLRMGMGCLIAGAVLLA  297
             +++G+ G S++GFSL FATVA+ MV T+RF    ++KWG ++ +  GM+ L++GA+LL+
Sbjct  237  RVLIGQAGYSEIGFSLAFATVALVMVTTTRFAKSFVAKWGIAGCVARGMALLVSGAILLG  296

Query  298  ITEIWASQSVLGFIAPMWLVGIGVATAVSVSPNGALRGFDHVAGTVTAVYFClggvllgs  357
            I ++ +S S ++FI PMW+V++G+  +VSV++NGAL  FD++AG+  A YFC+ +++++ 
Sbjct  297  IGQLFGSPSFFSFILPMWVVAVGIVFTVSVTANGALAQFDDIAGSAVAFYFCIQSLIVSI  356

Query  358  igtliisllPRNTAWPVVVYCLTLATVV-LGLSCVSRVKGSRGQGEHDV  405
            +GTL ++LL  +TAWPV+ Y  ++A +V LGL+ + R +++  +    V
Sbjct  357  VGTLAVTLLNGDTAWPVICYATAMAVLVSLGLA-LLRSRDAATEKSPVV  404

44) cmlA1 in NC_009651


> AY963803|10|G7|166865478|ABZ01840.1|Salmonella_enterica_subsp._enterica_SRC19|+|8118..9332|cmlA9|-|CmlA9 
chloramphenicol 
efflux protein
Length=404

 Score =  232 bits (865),  Expect = 3e-62, Method: Compositional matrix adjust.
 Identities = 201/403 (50%), Positives = 307/403 (77%), Gaps = 9/403 (2%)

Query  23   SWRYSLAATVlllspfdllaslGMDMYLPAVPFMPNALGttastiqltlttYLVMIGAGQ  82
            +W Y+L+A++LL++PFD+LASL+MD+YLP VP MP  L TT+S IQLTL+ Y+VM+G GQ
Sbjct  7    AWAYTLPAALLLMAPFDILASLAMDIYLPVVPAMPGVLNTTPSIIQLTLSLYMVMLGVGQ  66

Query  83   LLFGPLSDrlgrrpvllggglAYVVASMGLALTSSAEVFLGLRILQACGASACLVSTFAT  142
            ++FGPLSDR+GRRP+LL G+ A+V AS+G A +S+A  F+++R++QA GASA LV+TFAT
Sbjct  67   VIFGPLSDRVGRRPILLVGATAFVAASLGAACSSTALAFVAFRLVQAVGASAMLVATFAT  126

Query  143  VRDIYAGREESNVIYGILGSMLAMVPAVGPLLGALV-DMWLGWRAIF-AFLGLGMIAASA  200
            VRD+YA R E+ VIYG+++SMLA VPA+GP+ GAL+ + W GW+AIF ++ +L+ +A   
Sbjct  127  VRDVYANRPEGAVIYGLFSSMLAFVPALGPIAGALIGEFW-GWQAIFITLAALASLALLN  185

Query  201  AAWRFWPETRVQRVAGLQWSQLLLPV-KCLNFWLYTLCYAAGMGSFFVFFSIAPGLMMGR  259
            A+ R W ETR    A  Q+S  +LP+     FW+YT+ ++AGMG+FFVFFS AP +++G+
Sbjct  186  ASFR-WHETRPLDQARTQRS--VLPIFASPAFWVYTVGFSAGMGTFFVFFSTAPRVLIGQ  242

Query  260  QGVSQLGFSLLFATVAIAMVFTARFMGRVIPKWGSPSVLRMGMGCLIAGAVLLAITEIWA  319
             G S++GFSL FATVA+ MV T+RF    ++KWG ++ +  GM+ L++GA+LL+I ++ +
Sbjct  243  AGYSEIGFSLAFATVALVMVTTTRFAKSFVAKWGIAGCVARGMALLVSGAILLGIGQLFG  302

Query  320  SQSVLGFIAPMWLVGIGVATAVSVSPNGALRGFDHVAGTVTAVYFClggvllgsigtlii  379
            S S ++FI PMW+V++G+  +VSV++NGAL  FD++AG+  A YFC+ +++++ +GTL +
Sbjct  303  SPSFFSFILPMWVVAVGIVFTVSVTANGALAQFDDIAGSAVAFYFCIQSLIVSIVGTLAV  362

Query  380  sllPRNTAWPVVVYCLTLATVV-LGLSCVSRVKGSRGQGEHDV  421
            +LL  +TAWPV+ Y  ++A +V LGL+ + R +++  +    V
Sbjct  363  TLLNGDTAWPVICYATAMAVLVSLGLA-LLRSRDAATEKSPVV  404

45) cmlA in NC_006856


> AY963803|10|G7|166865478|ABZ01840.1|Salmonella_enterica_subsp._enterica_SRC19|+|8118..9332|cmlA9|-|CmlA9 
chloramphenicol 
efflux protein
Length=404

 Score =  231 bits (863),  Expect = 4e-62, Method: Compositional matrix adjust.
 Identities = 201/409 (50%), Positives = 309/409 (76%), Gaps = 9/409 (2%)

Query  1    MSSKNFSWRYSLAATVlllspfdllaslGMDMYLPAVPFMPNALGttastiqltlttYLV  60
            M++   +W Y+L+A++LL++PFD+LASL+MD+YLP VP MP  L TT+S IQLTL+ Y+V
Sbjct  1    MTTTRPAWAYTLPAALLLMAPFDILASLAMDIYLPVVPAMPGVLNTTPSIIQLTLSLYMV  60

Query  61   MIGAGQLLFGPLSDrlgrrpvllggglAYVVASMGLALTSSAEVFLGLRILQACGASACL  120
            M+G GQ++FGPLSDR+GRRP+LL G+ A+V AS+G A +S+A  F+++R++QA GASA L
Sbjct  61   MLGVGQVIFGPLSDRVGRRPILLVGATAFVAASLGAACSSTALAFVAFRLVQAVGASAML  120

Query  121  VSTFATVRDIYAGREESNVIYGILGSMLAMVPAVGPLLGALV-DMWLGWRAIF-AFLGLG  178
            V+TFATVRD+YA R E+ VIYG+++SMLA VPA+GP+ GAL+ + W GW+AIF ++ +L+
Sbjct  121  VATFATVRDVYANRPEGAVIYGLFSSMLAFVPALGPIAGALIGEFW-GWQAIFITLAALA  179

Query  179  MIAASAAAWRFWPETRVQRVAGLQWSQLLLPV-KCLNFWLYTLCYAAGMGSFFVFFSIAP  237
             +A   A+ R W ETR    A  Q+S  +LP+     FW+YT+ ++AGMG+FFVFFS AP
Sbjct  180  SLALLNASFR-WHETRPLDQARTQRS--VLPIFASPAFWVYTVGFSAGMGTFFVFFSTAP  236

Query  238  GLMMGRQGVSQLGFSLLFATVAIAMVFTARFMGRVIPKWGSPSVLRMGMGCLIAGAVLLA  297
             +++G+ G S++GFSL FATVA+ MV T+RF    ++KWG ++ +  GM+ L++GA+LL+
Sbjct  237  RVLIGQAGYSEIGFSLAFATVALVMVTTTRFAKSFVAKWGIAGCVARGMALLVSGAILLG  296

Query  298  ITEIWALQSVLGFIAPMWLVGIGVATAVSVAPNGALRGFDHVAGTVTAVYFClggvllgs  357
            I ++ +  S ++FI PMW+V++G+  +VSV++NGAL  FD++AG+  A YFC+ +++++ 
Sbjct  297  IGQLFGSPSFFSFILPMWVVAVGIVFTVSVTANGALAQFDDIAGSAVAFYFCIQSLIVSI  356

Query  358  igtliisllPRNTAWPVVVYCLTLATVV-LGLSCVSRVKGSRGQGEHDV  405
            +GTL ++LL  +TAWPV+ Y  ++A +V LGL+ + R +++  +    V
Sbjct  357  VGTLAVTLLNGDTAWPVICYATAMAVLVSLGLA-LLRSRDAATEKSPVV  404

46) SeSA_B0064 in NC_011092


> AY963803|10|G7|166865478|ABZ01840.1|Salmonella_enterica_subsp._enterica_SRC19|+|8118..9332|cmlA9|-|CmlA9 
chloramphenicol 
efflux protein
Length=404

 Score =  231 bits (863),  Expect = 4e-62, Method: Compositional matrix adjust.
 Identities = 201/409 (50%), Positives = 309/409 (76%), Gaps = 9/409 (2%)

Query  1    MSSKNFSWRYSLAATVlllspfdllaslGMDMYLPAVPFMPNALGttastiqltlttYLV  60
            M++   +W Y+L+A++LL++PFD+LASL+MD+YLP VP MP  L TT+S IQLTL+ Y+V
Sbjct  1    MTTTRPAWAYTLPAALLLMAPFDILASLAMDIYLPVVPAMPGVLNTTPSIIQLTLSLYMV  60

Query  61   MIGAGQLLFGPLSDrlgrrpvllggglAYVVASMGLALTSSAEVFLGLRILQACGASACL  120
            M+G GQ++FGPLSDR+GRRP+LL G+ A+V AS+G A +S+A  F+++R++QA GASA L
Sbjct  61   MLGVGQVIFGPLSDRVGRRPILLVGATAFVAASLGAACSSTALAFVAFRLVQAVGASAML  120

Query  121  VSTFATVRDIYAGREESNVIYGILGSMLAMVPAVGPLLGALV-DMWLGWRAIF-AFLGLG  178
            V+TFATVRD+YA R E+ VIYG+++SMLA VPA+GP+ GAL+ + W GW+AIF ++ +L+
Sbjct  121  VATFATVRDVYANRPEGAVIYGLFSSMLAFVPALGPIAGALIGEFW-GWQAIFITLAALA  179

Query  179  MIAASAAAWRFWPETRVQRVAGLQWSQLLLPV-KCLNFWLYTLCYAAGMGSFFVFFSIAP  237
             +A   A+ R W ETR    A  Q+S  +LP+     FW+YT+ ++AGMG+FFVFFS AP
Sbjct  180  SLALLNASFR-WHETRPLDQARTQRS--VLPIFASPAFWVYTVGFSAGMGTFFVFFSTAP  236

Query  238  GLMMGRQGVSQLGFSLLFATVAIAMVFTARFMGRVIPKWGSPSVLRMGMGCLIAGAVLLA  297
             +++G+ G S++GFSL FATVA+ MV T+RF    ++KWG ++ +  GM+ L++GA+LL+
Sbjct  237  RVLIGQAGYSEIGFSLAFATVALVMVTTTRFAKSFVAKWGIAGCVARGMALLVSGAILLG  296

Query  298  ITEIWALQSVLGFIAPMWLVGIGVATAVSVAPNGALRGFDHVAGTVTAVYFClggvllgs  357
            I ++ +  S ++FI PMW+V++G+  +VSV++NGAL  FD++AG+  A YFC+ +++++ 
Sbjct  297  IGQLFGSPSFFSFILPMWVVAVGIVFTVSVTANGALAQFDDIAGSAVAFYFCIQSLIVSI  356

Query  358  igtliisllPRNTAWPVVVYCLTLATVV-LGLSCVSRVKGSRGQGEHDV  405
            +GTL ++LL  +TAWPV+ Y  ++A +V LGL+ + R +++  +    V
Sbjct  357  VGTLAVTLLNGDTAWPVICYATAMAVLVSLGLA-LLRSRDAATEKSPVV  404

47) STU288_1p00745 in NC_021155


> AY963803|10|G7|166865478|ABZ01840.1|Salmonella_enterica_subsp._enterica_SRC19|+|8118..9332|cmlA9|-|CmlA9 
chloramphenicol 
efflux protein
Length=404

 Score =  231 bits (863),  Expect = 4e-62, Method: Compositional matrix adjust.
 Identities = 201/409 (50%), Positives = 309/409 (76%), Gaps = 9/409 (2%)

Query  1    MSSKNFSWRYSLAATVlllspfdllaslGMDMYLPAVPFMPNALGttastiqltlttYLV  60
            M++   +W Y+L+A++LL++PFD+LASL+MD+YLP VP MP  L TT+S IQLTL+ Y+V
Sbjct  1    MTTTRPAWAYTLPAALLLMAPFDILASLAMDIYLPVVPAMPGVLNTTPSIIQLTLSLYMV  60

Query  61   MIGAGQLLFGPLSDrlgrrpvllggglAYVVASMGLALTSSAEVFLGLRILQACGASACL  120
            M+G GQ++FGPLSDR+GRRP+LL G+ A+V AS+G A +S+A  F+++R++QA GASA L
Sbjct  61   MLGVGQVIFGPLSDRVGRRPILLVGATAFVAASLGAACSSTALAFVAFRLVQAVGASAML  120

Query  121  VSTFATVRDIYAGREESNVIYGILGSMLAMVPAVGPLLGALV-DMWLGWRAIF-AFLGLG  178
            V+TFATVRD+YA R E+ VIYG+++SMLA VPA+GP+ GAL+ + W GW+AIF ++ +L+
Sbjct  121  VATFATVRDVYANRPEGAVIYGLFSSMLAFVPALGPIAGALIGEFW-GWQAIFITLAALA  179

Query  179  MIAASAAAWRFWPETRVQRVAGLQWSQLLLPV-KCLNFWLYTLCYAAGMGSFFVFFSIAP  237
             +A   A+ R W ETR    A  Q+S  +LP+     FW+YT+ ++AGMG+FFVFFS AP
Sbjct  180  SLALLNASFR-WHETRPLDQARTQRS--VLPIFASPAFWVYTVGFSAGMGTFFVFFSTAP  236

Query  238  GLMMGRQGVSQLGFSLLFATVAIAMVFTARFMGRVIPKWGSPSVLRMGMGCLIAGAVLLA  297
             +++G+ G S++GFSL FATVA+ MV T+RF    ++KWG ++ +  GM+ L++GA+LL+
Sbjct  237  RVLIGQAGYSEIGFSLAFATVALVMVTTTRFAKSFVAKWGIAGCVARGMALLVSGAILLG  296

Query  298  ITEIWALQSVLGFIAPMWLVGIGVATAVSVAPNGALRGFDHVAGTVTAVYFClggvllgs  357
            I ++ +  S ++FI PMW+V++G+  +VSV++NGAL  FD++AG+  A YFC+ +++++ 
Sbjct  297  IGQLFGSPSFFSFILPMWVVAVGIVFTVSVTANGALAQFDDIAGSAVAFYFCIQSLIVSI  356

Query  358  igtliisllPRNTAWPVVVYCLTLATVV-LGLSCVSRVKGSRGQGEHDV  405
            +GTL ++LL  +TAWPV+ Y  ++A +V LGL+ + R +++  +    V
Sbjct  357  VGTLAVTLLNGDTAWPVICYATAMAVLVSLGLA-LLRSRDAATEKSPVV  404

48) Shewana3_2204 in NC_008577


> AY963803|10|G7|166865478|ABZ01840.1|Salmonella_enterica_subsp._enterica_SRC19|+|8118..9332|cmlA9|-|CmlA9 
chloramphenicol 
efflux protein
Length=404

 Score =  224 bits (836),  Expect = 5e-60, Method: Compositional matrix adjust.
 Identities = 154/350 (44%), Positives = 256/350 (74%), Gaps = 1/350 (0%)

Query  7    NPQDRKWDYTFAYSLLLLIPFDLLASLGMDLYLPAINDIRQSFSVSQGQMQLTLTLYMAI  66
                  W YT++ +LLL+ PFD+LASL+MD+YLP +  +   ++ + + +QLTL+LYM +
Sbjct  2    TTTRPAWAYTLPAALLLMAPFDILASLAMDIYLPVVPAMPGVLNTTPSIIQLTLSLYMVM  61

Query  67   LGLGQLLFGPLSDAIGRRRVVIAGALVYAGSSLAMALTDSFSVFLLLRIVQalsasavlv  126
            LG+GQ++FGPLSD +GRR +++ GA  + ++SL+ A + +   F+ +R+VQA++ASA+LV
Sbjct  62   LGVGQVIFGPLSDRVGRRPILLVGATAFVAASLGAACSSTALAFVAFRLVQAVGASAMLV  121

Query  127  aaFATVRDVFADREEGVVIYAIMGSVLAAVPVVAPFIGSLIDGLWHWRGIFYTLAIFAAL  186
            A+FATVRDV+A+R EG VIY++ +S+LA VP ++P+ G+LI+ +W W++IF TLA +A+L
Sbjct  122  ATFATVRDVYANRPEGAVIYGLFSSMLAFVPALGPIAGALIGEFWGWQAIFITLAALASL  181

Query  187  VGLHALLKWPETRPAQTHPFEWSRCFNIIRAKAFLGYTLAYATAMGAFFVYFSASPSILM  246
              L+A ++W ETRP +    ++S  + I+ + AF  YT++++++MG+FFV+FS++P +L+
Sbjct  182  ALLNASFRWHETRPLDQARTQRSV-LPIFASPAFWVYTVGFSAGMGTFFVFFSTAPRVLI  240

Query  247  DKLGLDKVTFSLWFGSVAIVMIITTRFVKHLVKRWGTQGTVlrgligmmlssgllyglEW  306
            ++ G   + FSL F++VA+VM+ TTRF K +V +WG  G V RG+  ++ ++ LL   + 
Sbjct  241  GQAGYSEIGFSLAFATVALVMVTTTRFAKSFVAKWGIAGCVARGMALLVSGAILLGIGQL  300

Query  307  LNGLSLLGFMLPMYFIGVHIALTCAVTANGALAAFSHSAGLATALYYAIE  356
            + + S+++F+LPM  ++V I +T +VTANGALA F + AG A A+Y+ I+
Sbjct  301  FGSPSFFSFILPMWVVAVGIVFTVSVTANGALAQFDDIAGSAVAFYFCIQ  350

49) BJAB0715_p0013 in NC_021734


> AY963803|10|G7|166865478|ABZ01840.1|Salmonella_enterica_subsp._enterica_SRC19|+|8118..9332|cmlA9|-|CmlA9 
chloramphenicol 
efflux protein
Length=404

 Score =  203 bits (755),  Expect = 1e-53, Method: Compositional matrix adjust.
 Identities = 176/349 (51%), Positives = 270/349 (78%), Gaps = 1/349 (0%)

Query  29   GMDMYLPVVPFMADALGSGAGTIQLTLTAYLVLLGAGQLLFGPLSDrlgrrpvllgggIA  88
            +MD+YLPVVP M++ L + ++ IQLTL+ Y+V+LG GQ++FGPLSDR+GRRP+LL G+ A
Sbjct  29   AMDIYLPVVPAMPGVLNTTPSIIQLTLSLYMVMLGVGQVIFGPLSDRVGRRPILLVGATA  88

Query  89   YIAASFGLTVVSSPELFLSFRVLQACGASACLVSTFATVRDIYSGREESNVIYGLLGSML  148
            ++AAS+G +  S++  F++FR++QA GASA LV+TFATVRD+Y+ R E+ VIYGL++SML
Sbjct  89   FVAASLGAACSSTALAFVAFRLVQAVGASAMLVATFATVRDVYANRPEGAVIYGLFSSML  148

Query  149  AMVPAIGPLLGALVDAWLGWRAIFGLLGMAMIGAVIAAWRLWPETRRHRTADLQWSQLLT  208
            A VPA+GP+ GAL++   GW+AIF  L+     A++ A   W ETR    A  Q+S +L 
Sbjct  149  AFVPALGPIAGALIGEFWGWQAIFITLAALASLALLNASFRWHETRPLDQARTQRS-VLP  207

Query  209  PVKHLNFWLYTLCYSAGMGSFFVFFSTAPWLMMGRQGlsqlsfsllfATVAIAMMATARI  268
                  FW+YT+ +SAGMG+FFVFFSTAP++++G+ G S+++FSL FATVA+ M++T+R+
Sbjct  208  IFASPAFWVYTVGFSAGMGTFFVFFSTAPRVLIGQAGYSEIGFSLAFATVALVMVTTTRF  267

Query  269  MGRLIPRWGSLKTLRvgmgclmagalllavgETLAPVSVLGFIAPMWLVGVGIATAVSVA  328
               ++++WG    +  GM+ L++GA+LL++G+ +++ S ++FI PMW+V+VGI  +VSV+
Sbjct  268  AKSFVAKWGIAGCVARGMALLVSGAILLGIGQLFGSPSFFSFILPMWVVAVGIVFTVSVT  327

Query  329  PNAALRGFDHIAGTATAVYFClgglllgiigtliitllstgttWPIIAY  377
            +N+AL  FD+IAG+A A YFC+ +L+++I+GTL +TLL+ +T+WP+I Y
Sbjct  328  ANGALAQFDDIAGSAVAFYFCIQSLIVSIVGTLAVTLLNGDTAWPVICY  376