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Homologs of hrcV gene of AY597281

protein-level

Hit (GenBank Accn)

Product

Source Genome

Eval.

Ident.(%)

1) hrpI
( YP_003539962.1 )

type III secretion system protein

NC_013971
(Erwinia amylovora ATCC 49946)

0.0

2) hrcV
( YP_003529892.1 )

type III secretion inner membrane protein HrcV

NC_013961
(Erwinia amylovora CFBP1430)

0.0

3) hrcV
( YP_005804085.1 )

type III secretion inner membrane protein HrcV

NC_017390
(Erwinia pyrifoliae DSM 12163)

0.0

4) hrpI
( YP_002650068.1 )

hrp/hrc type III secretion system-Hrp/hrc secretion/translocation pathway-harpin secretion protein

NC_012214
(Erwinia pyrifoliae Ep1/96)

0.0

5) hrpI
( YP_005818261.1 )

hrp/hrc Type III secretion system-Hrp/hrc secretion/translocation pathway-harpin secretion protein

NC_017445
(Erwinia sp. Ejp617)

0.0

6) hrpI
( YP_001906469.1 )

Harpin secretion protein HrpI (hrp cluster)

NC_010694
(Erwinia tasmaniensis Et1/99)

0.0

7) PC1_2206
( YP_003017781.1 )

HrcV family type III secretion protein

NC_012917
(Pectobacterium carotovorum PC1)

0.0

8) Ser39006_2913
( YP_008523295.1 )

type III secretion protein, HrcV family

NC_022268
(Serratia sp. ATCC 39006)

0.0

9) PCC21_022840
( YP_006646940.1 )

protein HrcV

NC_018525
(Pectobacterium carotovorum PCC21)

0.0

10) Dd586_1888
( YP_003333452.1 )

type III secretion protein, HrcV family

NC_013592
(Dickeya dadantii Ech586)

0.0

11) hrcV
( YP_273551.1 )

type III secretion component protein HrcV

NC_005773
(Pseudomonas syringae 1448A)

0.0

12) hrpI
( YP_050180.1 )

type III secretion system protein

NC_004547
(Pectobacterium atrosepticum SCRI1043)

0.0

13) Psyr_1215
( YP_234307.1 )

Type III secretion protein HrcV

NC_007005
(Pseudomonas syringae B728a)

0.0

14) hrcV
( NP_791229.1 )

type III secretion protein HrcV

NC_004578
(Pseudomonas syringae DC3000)

0.0

15) Dd1591_1891
( YP_003004220.1 )

HrcV family type III secretion protein

NC_012912
(Dickeya zeae Ech1591)

0.0

16) D781_3944
( YP_007346319.1 )

type III secretion protein, HrcV family

NC_020064
(Serratia marcescens FGI94)

0.0

17) hrcV
( YP_005210975.1 )

protein HrcV

NC_016830
(Pseudomonas fluorescens F113)

0.0

18) hrcV
( YP_003883240.1 )

type III secretion inner membrane channel protein (LcrD,HrcV,EscV,SsaV)

NC_014500
(Dickeya dadantii 3937)

0.0

19) Marme_1079
( YP_004312190.1 )

HrcV family type III secretion protein

NC_015276
(Marinomonas mediterranea MMB-1)

0.0

20) PSEBR_a5388
( YP_004356898.1 )

type III secretion protein, membrane protein

NC_015379
(Pseudomonas brassicacearum NFM421)

0.0

21) rscV
( YP_006322225.1 )

type III secretion protein RscV

NC_017911
(Pseudomonas fluorescens A506)

0.0

22) Pmen_0039
( YP_001185545.1 )

HrcV family type III secretion protein

NC_009439
(Pseudomonas mendocina ymp)

0.0

23) H045_00160
( YP_007395604.1 )

type III secretion protein RscV

NC_020209
(Pseudomonas poae RE*1-1-14)

0.0

24) H650_14870
( YP_008108774.1 )

hypothetical protein

NC_021500
(Enterobacter sp. R4-368)

1e-171

25) HCH_05101
( YP_436207.1 )

type III secretory pathway subunit EscV

NC_007645
(Hahella chejuensis KCTC 2396)

3e-112

26) hrcV
( YP_003774213.1 )

type III secretion HrcV transmembrane protein

NC_014323
(Herbaspirillum seropedicae SmR1)

5e-109

27) NH44784_014751
( YP_008028570.1 )

Type III secretion inner membrane channel protein (LcrD,HrcV,EscV,SsaV

NC_021285
(Achromobacter xylosoxidans NH44784-1996)

2e-103

28) lcrD
( YP_004677271.1 )

Low calcium response locus protein D

NC_015717
(Hyphomicrobium sp. MC1)

4e-102

29) bcrD
( YP_006899813.1 )

type III secretion pore protein

NC_018829
(Bordetella bronchiseptica MO149)

3e-100

30) yscV
( YP_005082203.1 )

Low calcium response locus protein D (LcrD)

NC_016642
(Pseudovibrio sp. FO-BEG1)

3e-100

31) yscV
( NP_995377.1 )

putative membrane-bound Yop protein YscV

NC_005813
(Yersinia pestis 91001)

4e-100

32) lcrD
( YP_001604466.1 )

type III secretion protein LcrD

NC_010157
(Yersinia pestis Angola)

4e-100

33) YPA_CD0028
( YP_636820.1 )

membrane-bound Yop protein

NC_008122
(Yersinia pestis Antiqua)

4e-100

34) yscV
( NP_395168.1 )

low calcium response protein D

NC_003131
(Yersinia pestis CO92)

4e-100

35) yscV
( YP_005503168.1 )

low calcium response protein D

NC_017153
(Yersinia pestis D106004)

4e-100

36) yscV
( YP_005506951.1 )

low calcium response protein D

NC_017157
(Yersinia pestis D182038)

4e-100

37) YPDSF_3983
( YP_001154612.1 )

membrane-bound Yop protein

NC_009377
(Yersinia pestis Pestoides F)

4e-100

38) yscV
( YP_003560527.1 )

low calcium response protein D

NC_014017
(Yersinia pestis Z176003)

4e-100

39) pYV0060
( YP_068469.1 )

lcrD, yscV; membrane-bound Yop protein

NC_006153
(Yersinia pseudotuberculosis IP 32953)

4e-100

40) YPTS_4279
( YP_001874679.1 )

HrcV family type III secretion protein

NC_010635
(Yersinia pseudotuberculosis PB1/+)

4e-100

41) YE105_P0016
( YP_004424918.1 )

low calcium response locus membrane protein D,required for Yop secretion

NC_015475
(Yersinia enterocolitica 105.5R(r))

8e-100

42) Y11_p0841
( YP_006007932.1 )

type III secretion inner membrane channel protein (LcrD,HrcV,EscV,SsaV)

NC_017565
(Yersinia enterocolitica Y11)

8e-100

43) bcrD
( YP_006967908.1 )

type III secretion pore protein

NC_019382
(Bordetella bronchiseptica 253)

1e-99

44) bcrD
( YP_006895356.1 )

type III secretion pore protein

NC_018828
(Bordetella parapertussis Bpp5)

1e-99

45) bcrD
( NP_888157.1 )

type III secretion pore protein

NC_002927
(Bordetella bronchiseptica RB50)

2e-99

46) bcrD
( YP_006625517.1 )

type III secretion pore protein

NC_018518
(Bordetella pertussis 18323)

2e-99

47) bcrD
( YP_005590294.1 )

putative type III secretion pore protein

NC_017223
(Bordetella pertussis CS)

2e-99

48) bcrD
( NP_880904.1 )

type III secretion pore protein

NC_002929
(Bordetella pertussis Tohama I)

2e-99

49) lcrD
( YP_001004072.1 )

low calcium response locus membrane protein d

NC_008791
(Yersinia enterocolitica 8081)

2e-99

50) HCH_03273
( YP_434455.1 )

type III secretory pathway subunit EscV

NC_007645
(Hahella chejuensis KCTC 2396)

5e-96

51) SG2090
( YP_455770.1 )

type III secretion apparatus InvA

NC_007712
(Sodalis glossinidius morsitans)

8e-96

52) bcrD
( NP_884466.1 )

type III secretion pore protein

NC_002928
(Bordetella parapertussis 12822)

2e-93

53) A1122_03810
( YP_005520457.1 )

secretion system apparatus protein SsaV

NC_017168
(Yersinia pestis A1122)

1e-88

54) YPO0266
( YP_002345347.1 )

secretion system apparatus protein SsaV

NC_003143
(Yersinia pestis CO92)

1e-88

55) YPD4_0230
( YP_005503442.1 )

secretion system apparatus protein

NC_017154
(Yersinia pestis D106004)

1e-88

56) YPD8_0235
( YP_005507318.1 )

secretion system apparatus protein

NC_017160
(Yersinia pestis D182038)

1e-88

57) YPC_0742
( YP_005622728.1 )

secretion system apparatus protein

NC_017265
(Yersinia pestis Harbin 35)

1e-88

58) YPZ3_0228
( YP_003566400.1 )

secretion system apparatus protein

NC_014029
(Yersinia pestis Z176003)

1e-88

59) flhA1
( NP_991814.1 )

secretion system apparatus protein SsaV

NC_005810
(Yersinia pestis 91001)

2e-88

60) YPA_4017
( YP_653923.1 )

secretion system apparatus protein SsaV

NC_008150
(Yersinia pestis Antiqua)

2e-88

61) y0525
( NP_667862.1 )

secretion system apparatus protein SsaV

NC_004088
(Yersinia pestis KIM)

2e-88

62) YPDSF_3705
( YP_001165028.1 )

secretion system apparatus protein SsaV

NC_009381
(Yersinia pestis Pestoides F)

2e-88

• Sequence Alignments

1) hrpI in NC_013971


> AY597281|10|G10|51103113|AAT96256.1|Pseudomonas_viridiflava_ME3.1b|+|9189..11279|hrcV|-|HrcV
Length=696

 Score =  796 bits (3014),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 477/700 (69%), Positives = 597/700 (86%), Gaps = 9/700 (1%)

Query  1    MSSLFVWLNRLAISAMQRSEVVGAAIVMSIVFMMIIPLPTGLIDVLIALNICISSLLIVL  60
            M++++  LNRLA++ M R+E+VGA +VM+IVFMMI+PLPT L+DVLIALNICISSLLIVL
Sbjct  1    MNGIIHLLNRLALAVMGRTEIVGAVMVMAIVFMMILPLPTWLVDVLIALNICISSLLIVL  60

Query  61   AMYLPKPLAFSTFPSVLLLTTMFRLALSISTTRQILLQQDAGHIVEAFGNFVVGGNLAVG  120
            AMYLP+PLAFSTFP+VLLLTTMFRL+LSI+TTR ILLQQDAGHIVEAFG+FVVGGNLAVG
Sbjct  61   AMYLPRPLAFSTFPAVLLLTTMFRLSLSIATTRLILLQQDAGHIVEAFGSFVVGGNLAVG  120

Query  121  LVIFLILTVVNFLVITKGSERVAEVAARFTLDAMPGKQMSIDSDLRAGLIEAHQARQRRE  180
            LVIFLILT+VNFLVITKGSERVAEVAARFTLDAMPGKQMSIDSDLRA LI+ ++AR+RRE
Sbjct  121  LVIFLILTIVNFLVITKGSERVAEVAARFTLDAMPGKQMSIDSDLRANLINVREARHRRE  180

Query  181  NLAKESQLFGAMDGAMKFVKGDAIAGLVIVFINMIGGFAIGVLQNGMEAGAAMHIYSVLT  240
            +L+KESQLFGAMDGAMKFVKGDAIAGLVIVFIN+IGGF+IGVLQNGMEAG AMH+YSVLT
Sbjct  181  QLSKESQLFGAMDGAMKFVKGDAIAGLVIVFINLIGGFSIGVLQNGMEAGDAMHLYSVLT  240

Query  241  IGDGLIAQIPALLISLTAGMIITRVSADGQQVDANIGREIAEQLTSQPKAWIMSAAGMLG  300
            IGDGLIAQIPALLISLTAGMIITRV++D+Q  DANIG+EIAEQLTSQPKAW+ S+ GM+G
Sbjct  241  IGDGLIAQIPALLISLTAGMIITRVAPDSQTADANIGHEIAEQLTSQPKAWVFSSIGMMG  300

Query  301  FALLPGMPTAVFVIISAIALGSGLFQLWRIKQQDSQQQADELHAQQLAPEDNGYQDLRRF  360
            F+L+PGMPT VF  I+ + L SGL+QLWRI+Q++ +Q++    ++  APE NG +D+RRF
Sbjct  301  FGLIPGMPTLVFACIALLCLFSGLIQLWRIRQKELHQDSIGAASKG-APELNGREDIRRF  359

Query  361  NPTRAYLLQFSQEHLNSEAAESLIQHIRRLRNRLVYHFGFTLPSFDIEFSPALAADEFRF  420
            NP+RAYLLQ    H  +   + LIQ IR+ RN LV +FG+TLPSFD+EF+  + +DEFRF
Sbjct  360  NPSRAYLLQCHSSHQGTAELDRLIQGIRQRRNTLVHNFGLTLPSFDMEFADHFEPDEFRF  419

Query  421  CVYEIPLVTATFAVEQLAVRTSSIEIHLADGESDGQIQPGQAERDEHHWCWLPPQHPLLQ  480
            CVYE+P++ ATF+  +LAV    I+        ++  +PG+ ERDE +W W+  ++PLL+
Sbjct  420  CVYEVPFIRATFTNARLAVDHREID--------EDAGEPGRVERDETRWVWVDIDDPLLK  471

Query  481  QEDRRCWNAQQLIMLRMEQAIHQSGAQFIGLQESKSILNWLESEQPELAQELQRIMPLSR  540
            +E++   ++ +LI+ RM +A++ +G+QFIGLQESK+IL+WLESEQPELAQELQR +PL+R
Sbjct  472  EEEHAGVSSLELILERMSRAFQATGPQFIGLQESKAILSWLESEQPELAQELQRTLPLAR  531

Query  541  FAAVLQRLASERIPLRSVRTIAETLIEHGQHERDSAALTDFVRIALKEHICHQYQQPNGL  600
            FAAVLQRL++E ++LRSVR IAETLIE+GQHERD  ALTD VRIALK +ICHQ  + N L
Sbjct  532  FAAVLQRLSAELVSLRSVRPIAETLIEQGQHERDLNALTDHVRIALKAQICHQHCEENTL  591

Query  601  NVWLLTPETEELLRDSLRQAQSETFFSLAQEYGINLLNQMRSAFPPYDNHHALILVAQDL  660
            + WL+TPETE LLRDSLRQ+Q+E++F+L  E G  L++Q+R AFP   + ++++LVAQDL
Sbjct  592  HTWLVTPETEVLLRDSLRQTQNESYFALEPELGNALVEQLREAFPLQASPRPVLLVAQDL  651

Query  661  RSPLRALLKDEFHAVPVLSFAELTSNVAINVLGRLDLQQS  700
            RSPLR+LL D+FH VPVLSFAEL + V ++VLGR+DLQ++
Sbjct  652  RSPLRSLLTDQFHHVPVLSFAELIPTVQVQVLGRIDLQET  691

2) hrcV in NC_013961


> AY597281|10|G10|51103113|AAT96256.1|Pseudomonas_viridiflava_ME3.1b|+|9189..11279|hrcV|-|HrcV
Length=696

 Score =  796 bits (3014),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 477/700 (69%), Positives = 597/700 (86%), Gaps = 9/700 (1%)

Query  1    MSSLFVWLNRLAISAMQRSEVVGAAIVMSIVFMMIIPLPTGLIDVLIALNICISSLLIVL  60
            M++++  LNRLA++ M R+E+VGA +VM+IVFMMI+PLPT L+DVLIALNICISSLLIVL
Sbjct  1    MNGIIHLLNRLALAVMGRTEIVGAVMVMAIVFMMILPLPTWLVDVLIALNICISSLLIVL  60

Query  61   AMYLPKPLAFSTFPSVLLLTTMFRLALSISTTRQILLQQDAGHIVEAFGNFVVGGNLAVG  120
            AMYLP+PLAFSTFP+VLLLTTMFRL+LSI+TTR ILLQQDAGHIVEAFG+FVVGGNLAVG
Sbjct  61   AMYLPRPLAFSTFPAVLLLTTMFRLSLSIATTRLILLQQDAGHIVEAFGSFVVGGNLAVG  120

Query  121  LVIFLILTVVNFLVITKGSERVAEVAARFTLDAMPGKQMSIDSDLRAGLIEAHQARQRRE  180
            LVIFLILT+VNFLVITKGSERVAEVAARFTLDAMPGKQMSIDSDLRA LI+ ++AR+RRE
Sbjct  121  LVIFLILTIVNFLVITKGSERVAEVAARFTLDAMPGKQMSIDSDLRANLINVREARHRRE  180

Query  181  NLAKESQLFGAMDGAMKFVKGDAIAGLVIVFINMIGGFAIGVLQNGMEAGAAMHIYSVLT  240
            +L+KESQLFGAMDGAMKFVKGDAIAGLVIVFIN+IGGF+IGVLQNGMEAG AMH+YSVLT
Sbjct  181  QLSKESQLFGAMDGAMKFVKGDAIAGLVIVFINLIGGFSIGVLQNGMEAGDAMHLYSVLT  240

Query  241  IGDGLIAQIPALLISLTAGMIITRVSADGQQVDANIGREIAEQLTSQPKAWIMSAAGMLG  300
            IGDGLIAQIPALLISLTAGMIITRV++D+Q  DANIG+EIAEQLTSQPKAW+ S+ GM+G
Sbjct  241  IGDGLIAQIPALLISLTAGMIITRVAPDSQTADANIGHEIAEQLTSQPKAWVFSSIGMMG  300

Query  301  FALLPGMPTAVFVIISAIALGSGLFQLWRIKQQDSQQQADELHAQQLAPEDNGYQDLRRF  360
            F+L+PGMPT VF  I+ + L SGL+QLWRI+Q++ +Q++    ++  APE NG +D+RRF
Sbjct  301  FGLIPGMPTLVFACIALLCLFSGLIQLWRIRQKELHQDSIGAASKG-APELNGREDIRRF  359

Query  361  NPTRAYLLQFSQEHLNSEAAESLIQHIRRLRNRLVYHFGFTLPSFDIEFSPALAADEFRF  420
            NP+RAYLLQ    H  +   + LIQ IR+ RN LV +FG+TLPSFD+EF+  + +DEFRF
Sbjct  360  NPSRAYLLQCHSSHQGTAELDRLIQGIRQRRNTLVHNFGLTLPSFDMEFADHFEPDEFRF  419

Query  421  CVYEIPLVTATFAVEQLAVRTSSIEIHLADGESDGQIQPGQAERDEHHWCWLPPQHPLLQ  480
            CVYE+P++ ATF+  +LAV    I+        ++  +PG+ ERDE +W W+  ++PLL+
Sbjct  420  CVYEVPFIRATFTNARLAVDHREID--------EDAGEPGRVERDETRWVWVDIDDPLLK  471

Query  481  QEDRRCWNAQQLIMLRMEQAIHQSGAQFIGLQESKSILNWLESEQPELAQELQRIMPLSR  540
            +E++   ++ +LI+ RM +A++ +G+QFIGLQESK+IL+WLESEQPELAQELQR +PL+R
Sbjct  472  EEEHAGVSSLELILERMSRAFQATGPQFIGLQESKAILSWLESEQPELAQELQRTLPLAR  531

Query  541  FAAVLQRLASERIPLRSVRTIAETLIEHGQHERDSAALTDFVRIALKEHICHQYQQPNGL  600
            FAAVLQRL++E ++LRSVR IAETLIE+GQHERD  ALTD VRIALK +ICHQ  + N L
Sbjct  532  FAAVLQRLSAELVSLRSVRPIAETLIEQGQHERDLNALTDHVRIALKAQICHQHCEENTL  591

Query  601  NVWLLTPETEELLRDSLRQAQSETFFSLAQEYGINLLNQMRSAFPPYDNHHALILVAQDL  660
            + WL+TPETE LLRDSLRQ+Q+E++F+L  E G  L++Q+R AFP   + ++++LVAQDL
Sbjct  592  HTWLVTPETEVLLRDSLRQTQNESYFALEPELGNALVEQLREAFPLQASPRPVLLVAQDL  651

Query  661  RSPLRALLKDEFHAVPVLSFAELTSNVAINVLGRLDLQQS  700
            RSPLR+LL D+FH VPVLSFAEL + V ++VLGR+DLQ++
Sbjct  652  RSPLRSLLTDQFHHVPVLSFAELIPTVQVQVLGRIDLQET  691

3) hrpI in NC_017445


> AY597281|10|G10|51103113|AAT96256.1|Pseudomonas_viridiflava_ME3.1b|+|9189..11279|hrcV|-|HrcV
Length=696

 Score =  789 bits (2987),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 477/700 (69%), Positives = 596/700 (86%), Gaps = 9/700 (1%)

Query  1    MSSLFVWLNRLAISAMQRSEVVGAAIVMSIVFMMIIPLPTGLIDVLIALNICISSLLIVL  60
            M++++  LNRLA++ M R+E+VGA +VM+IVFMMI+PLPT L+DVLIALNICISSLLIVL
Sbjct  1    MNGIIHLLNRLALAVMGRTEIVGAVMVMAIVFMMILPLPTWLVDVLIALNICISSLLIVL  60

Query  61   AMYLPKPLAFSTFPSVLLLTTMFRLALSISTTRQILLQQDAGHIVEAFGNFVVGGNLAVG  120
            AMYLP+PLAFSTFP+VLLLTTMFRL+LSI+TTR ILLQQDAGHIVEAFG+FVVGGNLAVG
Sbjct  61   AMYLPRPLAFSTFPAVLLLTTMFRLSLSIATTRLILLQQDAGHIVEAFGSFVVGGNLAVG  120

Query  121  LVIFLILTVVNFLVITKGSERVAEVAARFTLDAMPGKQMSIDSDLRAGLIEAHQARQRRE  180
            LVIFLILT+VNFLVITKGSERVAEVAARFTLDAMPGKQMSIDSDLRA LI+ ++AR+RRE
Sbjct  121  LVIFLILTIVNFLVITKGSERVAEVAARFTLDAMPGKQMSIDSDLRANLINVREARHRRE  180

Query  181  NLAKESQLFGAMDGAMKFVKGDAIAGLVIVFINMIGGFAIGVLQNGMEAGAAMHIYSVLT  240
            +L+KESQLFGAMDGAMKFVKGDAIAGLVIVFIN+IGGF+IGVLQNGMEAG AMH+YSVLT
Sbjct  181  QLSKESQLFGAMDGAMKFVKGDAIAGLVIVFINLIGGFSIGVLQNGMEAGDAMHLYSVLT  240

Query  241  IGDGLIAQIPALLISLTAGMIITRVSADGQQVDANIGREIAEQLTSQPKAWIMSAAGMLG  300
            IGDGLIAQIPALLISLTAGMIITRV++D+Q  DANIG+EIAEQLTSQPKAW+ S+ GM+G
Sbjct  241  IGDGLIAQIPALLISLTAGMIITRVAPDSQTADANIGHEIAEQLTSQPKAWVFSSIGMMG  300

Query  301  FALLPGMPTAVFVIISAIALGSGLFQLWRIKqqdnqqqadelqaqqlaPEDNGHQDLRRF  360
            F+L+PGMPT VF  I+ + L SGL+QLWRI+ Q + +Q     A + APE NG++D+RRF
Sbjct  301  FGLIPGMPTLVFACIALLCLFSGLIQLWRIR-QKELHQDSIGAASKGAPELNGREDIRRF  359

Query  361  NPTRAYLLQFSQAHLNSEAAESLIQHIRRLRNRLVYHFGFTLPSFDIEFSPTLAADEFRF  420
            NP+RAYLLQ   +H  +   + LIQ IR+ RN LV +FG+TLPSFD+EF+  + +DEFRF
Sbjct  360  NPSRAYLLQCHSSHQGTAELDRLIQGIRQRRNTLVHNFGLTLPSFDMEFADHFEPDEFRF  419

Query  421  CVYEIPLVTATFDVGQLAVRTSSIEMHLADGDSDGQIQPGQAERDEHHWCWLPPQHPLLQ  480
            CVYE+P++ ATF  ++LAV    I+        ++  +PG+ ERDE +W W+  ++PLL+
Sbjct  420  CVYEVPFIRATFTNARLAVDHREID--------EDAGEPGRVERDETRWVWVDIDDPLLK  471

Query  481  QEDRHYWNAQQLIMLRMEQAIHQSGSQFIGLQESKSILNWLESEQPELAQELQRIMPLSR  540
            +E++   ++ +LI+ RM +A++ +G+QFIGLQESK+IL+WLESEQPELAQELQR +PL+R
Sbjct  472  EEEHAGVSSLELILERMSRAFQATGPQFIGLQESKAILSWLESEQPELAQELQRTLPLAR  531

Query  541  FAAVLQRLASERIPLRSVRTIAETLIEHGQHERDSAALTDFVRIALKEHICHQYQQPNGL  600
            FAAVLQRL++E ++LRSVR IAETLIE+GQHERD  ALTD VRIALK +ICHQ  + N L
Sbjct  532  FAAVLQRLSAELVSLRSVRPIAETLIEQGQHERDLNALTDHVRIALKAQICHQHCEENTL  591

Query  601  NVWLLTPETEELLRDSLRQAQSETFFSLAQDYGINLLNQMRSAFPPYDNSPALILVAQDL  660
            + WL+TPETE LLRDSLRQ+Q+E++F+L  + G  L++Q+R AFP   ++ +++LVAQDL
Sbjct  592  HTWLVTPETEVLLRDSLRQTQNESYFALEPELGNALVEQLREAFPLQASPRPVLLVAQDL  651

Query  661  RSPLRALLKDEFHAVPVLSFAELTSNVAINVLGRLDLQQS  700
            RSPLR+LL D+FH VPVLSFAEL + V ++VLGR+DLQ++
Sbjct  652  RSPLRSLLTDQFHHVPVLSFAELIPTVQVQVLGRIDLQET  691

4) hrcV in NC_017390


> AY597281|10|G10|51103113|AAT96256.1|Pseudomonas_viridiflava_ME3.1b|+|9189..11279|hrcV|-|HrcV
Length=696

 Score =  789 bits (2986),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 477/700 (69%), Positives = 596/700 (86%), Gaps = 9/700 (1%)

Query  1    MSSLFVWLNRLAISAMQRSEVVGAAIVMSIVFMMIIPLPTGLIDVLIALNICISSLLIVL  60
            M++++  LNRLA++ M R+E+VGA +VM+IVFMMI+PLPT L+DVLIALNICISSLLIVL
Sbjct  1    MNGIIHLLNRLALAVMGRTEIVGAVMVMAIVFMMILPLPTWLVDVLIALNICISSLLIVL  60

Query  61   AMYLPKPLAFSTFPSVLLLTTMFRLALSISTTRQILLQQDAGHIVEAFGNFVVGGNLAVG  120
            AMYLP+PLAFSTFP+VLLLTTMFRL+LSI+TTR ILLQQDAGHIVEAFG+FVVGGNLAVG
Sbjct  61   AMYLPRPLAFSTFPAVLLLTTMFRLSLSIATTRLILLQQDAGHIVEAFGSFVVGGNLAVG  120

Query  121  LVIFLILTVVNFLVITKGSERVAEVAARFTLDAMPGKQMSIDSDLRAGLIEAHQARQRRE  180
            LVIFLILT+VNFLVITKGSERVAEVAARFTLDAMPGKQMSIDSDLRA LI+ ++AR+RRE
Sbjct  121  LVIFLILTIVNFLVITKGSERVAEVAARFTLDAMPGKQMSIDSDLRANLINVREARHRRE  180

Query  181  NLAKESQLFGAMDGAMKFVKGDAIAGLVIVFINMIGGFAIGVLQNGMEAGAAMHIYSVLT  240
            +L+KESQLFGAMDGAMKFVKGDAIAGLVIVFIN+IGGF+IGVLQNGMEAG AMH+YSVLT
Sbjct  181  QLSKESQLFGAMDGAMKFVKGDAIAGLVIVFINLIGGFSIGVLQNGMEAGDAMHLYSVLT  240

Query  241  IGDGLIAQIPALLISLTAGMIITRVSADGQQVDANIGREIAEQLTSQPKAWIMSAAGMLG  300
            IGDGLIAQIPALLISLTAGMIITRV++D+Q  DANIG+EIAEQLTSQPKAW+ S+ GM+G
Sbjct  241  IGDGLIAQIPALLISLTAGMIITRVAPDSQTADANIGHEIAEQLTSQPKAWVFSSIGMMG  300

Query  301  FALLPGMPTTVFVIISAIALGSGLFQLWRIKqqdnqqqadelqaqqlaPEDNGHQDLRRF  360
            F+L+PGMPT VF  I+ + L SGL+QLWRI+ Q + +Q     A + APE NG++D+RRF
Sbjct  301  FGLIPGMPTLVFACIALLCLFSGLIQLWRIR-QKELHQDSIGAASKGAPELNGREDIRRF  359

Query  361  NPTRAYLLQFSQAHLNSEAAESLIQHIRRLRNRLVYHFGFTLPSFDIEFSPTLAADEFRF  420
            NP+RAYLLQ   +H  +   + LIQ IR+ RN LV +FG+TLPSFD+EF+  + +DEFRF
Sbjct  360  NPSRAYLLQCHSSHQGTAELDRLIQGIRQRRNTLVHNFGLTLPSFDMEFADHFEPDEFRF  419

Query  421  CVYEIPLVTATFDVGQLAVRTSSIEMHLADGDSDGQIQPGQAERDEHHWCWLPPQHPLLQ  480
            CVYE+P++ ATF  ++LAV    I+        ++  +PG+ ERDE +W W+  ++PLL+
Sbjct  420  CVYEVPFIRATFTNARLAVDHREID--------EDAGEPGRVERDETRWVWVDIDDPLLK  471

Query  481  QEDRHYWNAQQLIMLRMEQAIHQSGSQFIGLQESKSILNWLESEQPELAQELQRIMPLSR  540
            +E++   ++ +LI+ RM +A++ +G+QFIGLQESK+IL+WLESEQPELAQELQR +PL+R
Sbjct  472  EEEHAGVSSLELILERMSRAFQATGPQFIGLQESKAILSWLESEQPELAQELQRTLPLAR  531

Query  541  FAAVLQRLASERIPLRSVRTIAETLIEHGQHERDSAALTDFVRIALKEHICHQYQQPNGL  600
            FAAVLQRL++E ++LRSVR IAETLIE+GQHERD  ALTD VRIALK +ICHQ  + N L
Sbjct  532  FAAVLQRLSAELVSLRSVRPIAETLIEQGQHERDLNALTDHVRIALKAQICHQHCEENTL  591

Query  601  NVWLLTPETEELLRDSLRQAQSETFFSLAQDYGINLLNQMRSAFPPYDNSPALILVAQDL  660
            + WL+TPETE LLRDSLRQ+Q+E++F+L  + G  L++Q+R AFP   ++ +++LVAQDL
Sbjct  592  HTWLVTPETEVLLRDSLRQTQNESYFALEPELGNALVEQLREAFPLQASPRPVLLVAQDL  651

Query  661  RSPLRALLKDEFHAVPVLSFAELTSNVAINVLGRLDLQQS  700
            RSPLR+LL D+FH VPVLSFAEL + V ++VLGR+DLQ++
Sbjct  652  RSPLRSLLTDQFHHVPVLSFAELIPTVQVQVLGRIDLQET  691

5) hrpI in NC_012214


> AY597281|10|G10|51103113|AAT96256.1|Pseudomonas_viridiflava_ME3.1b|+|9189..11279|hrcV|-|HrcV
Length=696

 Score =  789 bits (2986),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 477/700 (69%), Positives = 596/700 (86%), Gaps = 9/700 (1%)

Query  1    MSSLFVWLNRLAISAMQRSEVVGAAIVMSIVFMMIIPLPTGLIDVLIALNICISSLLIVL  60
            M++++  LNRLA++ M R+E+VGA +VM+IVFMMI+PLPT L+DVLIALNICISSLLIVL
Sbjct  1    MNGIIHLLNRLALAVMGRTEIVGAVMVMAIVFMMILPLPTWLVDVLIALNICISSLLIVL  60

Query  61   AMYLPKPLAFSTFPSVLLLTTMFRLALSISTTRQILLQQDAGHIVEAFGNFVVGGNLAVG  120
            AMYLP+PLAFSTFP+VLLLTTMFRL+LSI+TTR ILLQQDAGHIVEAFG+FVVGGNLAVG
Sbjct  61   AMYLPRPLAFSTFPAVLLLTTMFRLSLSIATTRLILLQQDAGHIVEAFGSFVVGGNLAVG  120

Query  121  LVIFLILTVVNFLVITKGSERVAEVAARFTLDAMPGKQMSIDSDLRAGLIEAHQARQRRE  180
            LVIFLILT+VNFLVITKGSERVAEVAARFTLDAMPGKQMSIDSDLRA LI+ ++AR+RRE
Sbjct  121  LVIFLILTIVNFLVITKGSERVAEVAARFTLDAMPGKQMSIDSDLRANLINVREARHRRE  180

Query  181  NLAKESQLFGAMDGAMKFVKGDAIAGLVIVFINMIGGFAIGVLQNGMEAGAAMHIYSVLT  240
            +L+KESQLFGAMDGAMKFVKGDAIAGLVIVFIN+IGGF+IGVLQNGMEAG AMH+YSVLT
Sbjct  181  QLSKESQLFGAMDGAMKFVKGDAIAGLVIVFINLIGGFSIGVLQNGMEAGDAMHLYSVLT  240

Query  241  IGDGLIAQIPALLISLTAGMIITRVSADGQQVDANIGREIAEQLTSQPKAWIMSAAGMLG  300
            IGDGLIAQIPALLISLTAGMIITRV++D+Q  DANIG+EIAEQLTSQPKAW+ S+ GM+G
Sbjct  241  IGDGLIAQIPALLISLTAGMIITRVAPDSQTADANIGHEIAEQLTSQPKAWVFSSIGMMG  300

Query  301  FALLPGMPTTVFVIISAIALGSGLFQLWRIKqqdnqqqadelqaqqlaPEDNGHQDLRRF  360
            F+L+PGMPT VF  I+ + L SGL+QLWRI+ Q + +Q     A + APE NG++D+RRF
Sbjct  301  FGLIPGMPTLVFACIALLCLFSGLIQLWRIR-QKELHQDSIGAASKGAPELNGREDIRRF  359

Query  361  NPTRAYLLQFSQAHLNSEAAESLIQHIRRLRNRLVYHFGFTLPSFDIEFSPTLAADEFRF  420
            NP+RAYLLQ   +H  +   + LIQ IR+ RN LV +FG+TLPSFD+EF+  + +DEFRF
Sbjct  360  NPSRAYLLQCHSSHQGTAELDRLIQGIRQRRNTLVHNFGLTLPSFDMEFADHFEPDEFRF  419

Query  421  CVYEIPLVTATFDVGQLAVRTSSIEMHLADGDSDGQIQPGQAERDEHHWCWLPPQHPLLQ  480
            CVYE+P++ ATF  ++LAV    I+        ++  +PG+ ERDE +W W+  ++PLL+
Sbjct  420  CVYEVPFIRATFTNARLAVDHREID--------EDAGEPGRVERDETRWVWVDIDDPLLK  471

Query  481  QEDRHYWNAQQLIMLRMEQAIHQSGSQFIGLQESKSILNWLESEQPELAQELQRIMPLSR  540
            +E++   ++ +LI+ RM +A++ +G+QFIGLQESK+IL+WLESEQPELAQELQR +PL+R
Sbjct  472  EEEHAGVSSLELILERMSRAFQATGPQFIGLQESKAILSWLESEQPELAQELQRTLPLAR  531

Query  541  FAAVLQRLASERIPLRSVRTIAETLIEHGQHERDSAALTDFVRIALKEHICHQYQQPNGL  600
            FAAVLQRL++E ++LRSVR IAETLIE+GQHERD  ALTD VRIALK +ICHQ  + N L
Sbjct  532  FAAVLQRLSAELVSLRSVRPIAETLIEQGQHERDLNALTDHVRIALKAQICHQHCEENTL  591

Query  601  NVWLLTPETEELLRDSLRQAQSETFFSLAQDYGINLLNQMRSAFPPYDNSPALILVAQDL  660
            + WL+TPETE LLRDSLRQ+Q+E++F+L  + G  L++Q+R AFP   ++ +++LVAQDL
Sbjct  592  HTWLVTPETEVLLRDSLRQTQNESYFALEPELGNALVEQLREAFPLQASPRPVLLVAQDL  651

Query  661  RSPLRALLKDEFHAVPVLSFAELTSNVAINVLGRLDLQQS  700
            RSPLR+LL D+FH VPVLSFAEL + V ++VLGR+DLQ++
Sbjct  652  RSPLRSLLTDQFHHVPVLSFAELIPTVQVQVLGRIDLQET  691

6) hrpI in NC_010694


> AY597281|10|G10|51103113|AAT96256.1|Pseudomonas_viridiflava_ME3.1b|+|9189..11279|hrcV|-|HrcV
Length=696

 Score =  786 bits (2975),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 476/700 (68%), Positives = 598/700 (86%), Gaps = 9/700 (1%)

Query  1    MSALFVWLNRLAISAMQRSEVVGAAIVMSIVFMMIIPLPTGLIDVLIALNICISSLLIVL  60
            M++++  LNRLA++ M R+E+VGA +VM+IVFMMI+PLPT L+DVLIALNICISSLLIVL
Sbjct  1    MNGIIHLLNRLALAVMGRTEIVGAVMVMAIVFMMILPLPTWLVDVLIALNICISSLLIVL  60

Query  61   AMYLPKPLAFSTFPSVLLLTTMFRLALSISTTRQILLQQDAGHIVEAFGNFVVGGNLAVG  120
            AMYLP+PLAFSTFP+VLLLTTMFRL+LSI+TTR ILLQQDAGHIVEAFG+FVVGGNLAVG
Sbjct  61   AMYLPRPLAFSTFPAVLLLTTMFRLSLSIATTRLILLQQDAGHIVEAFGSFVVGGNLAVG  120

Query  121  LVIFLILTVVNFLVITKGSERVAEVAARFTLDAMPGKQMSIDSDLRAGLLEAHQARQRRE  180
            LVIFLILT+VNFLVITKGSERVAEVAARFTLDAMPGKQMSIDSDLRA L++ ++AR+RRE
Sbjct  121  LVIFLILTIVNFLVITKGSERVAEVAARFTLDAMPGKQMSIDSDLRANLINVREARHRRE  180

Query  181  NLAKESQLFGAMDGAMKFVKGDAIAGLVIVFINMIGGFAIGVLQNGMEPGAAMHIYSVLT  240
            +L+KESQLFGAMDGAMKFVKGDAIAGLVIVFIN+IGGF+IGVLQNGME+G AMH+YSVLT
Sbjct  181  QLSKESQLFGAMDGAMKFVKGDAIAGLVIVFINLIGGFSIGVLQNGMEAGDAMHLYSVLT  240

Query  241  IGDGLIAQIPALLISLTAGMIITRVSADGQQVDANIGREIAEQLTSQPKAWIMSAAGMLG  300
            IGDGLIAQIPALLISLTAGMIITRV++D+Q  DANIG+EIAEQLTSQPKAW+ S+ GM+G
Sbjct  241  IGDGLIAQIPALLISLTAGMIITRVAPDSQTADANIGHEIAEQLTSQPKAWVFSSIGMMG  300

Query  301  FALLPGMPTAVFIIISAIALGSGLFQLWRTRqqdnqqqadqlqaqqlaPEDNGHQDLRRF  360
            F+L+PGMPT VF  I+ + L SGL+QLWR R Q + +Q     A + APE NG++D+RRF
Sbjct  301  FGLIPGMPTLVFACIALLCLFSGLIQLWRIR-QKELHQDSIGAASKGAPELNGREDIRRF  359

Query  361  NPTRAYLLQFSPAHSNSAAAESLIQHIRRLRNRLVYHFGFTLPSFDIEFSPALDDGEFRF  420
            NP+RAYLLQ  ++H  +A  + LIQ IR+ RN LV +FG+TLPSFD+EF+  ++ +EFRF
Sbjct  360  NPSRAYLLQCHSSHQGTAELDRLIQGIRQRRNTLVHNFGLTLPSFDMEFADHFEPDEFRF  419

Query  421  CVYEIPLVTATFAVDRLAVRKSSIELHAADGDSDGPIQPGQAERDEHHWCWLPPQHPWLQ  480
            CVYE+P++ ATF+  RLAV    I+        +++ +PG+ ERDE +W W+  ++P L+
Sbjct  420  CVYEVPFIRATFTNARLAVDHREID--------EDAGEPGRVERDETRWVWVDIDDPLLK  471

Query  481  QEDRRYWNAEQLIMLRMEQAIHQSGAQFIGLQESKSILNWLESEQPELAQELQRIMPLSR  540
            +E++   ++ +LI+ RM +A++ +G+QFIGLQESK+IL+WLESEQPELAQELQR +PL+R
Sbjct  472  EEEHAGVSSLELILERMSRAFQATGPQFIGLQESKAILSWLESEQPELAQELQRTLPLAR  531

Query  541  FAAVLQRLASERIPLRSVRTIAETLIEHGQHERDSAALTDFVRIALKEHICHQYQQPNGL  600
            FAAVLQRL++E ++LRSVR IAETLIE+GQHERD  ALTD VRIALK +ICHQ  + N L
Sbjct  532  FAAVLQRLSAELVSLRSVRPIAETLIEQGQHERDLNALTDHVRIALKAQICHQHCEENTL  591

Query  601  DAWLLTPETEELLRDSLRQAQSETFFSLAQEYGVNLLNQLRSAFPPYDNHQALILVAQDL  660
            ++WL+TPETE LLRDSLRQ+Q+E++F+L  E G  L++QLR AFP   + ++++LVAQDL
Sbjct  592  HTWLVTPETEVLLRDSLRQTQNESYFALEPELGNALVEQLREAFPLQASPRPVLLVAQDL  651

Query  661  RSPLRALLKDEFHAVPVLSFAELTSNVAINVLGRLDLHQS  700
            RSPLR+LL D+FH VPVLSFAEL + V ++VLGR+DL+++
Sbjct  652  RSPLRSLLTDQFHHVPVLSFAELIPTVQVQVLGRIDLQET  691

7) PC1_2206 in NC_012917


> AY597281|10|G10|51103113|AAT96256.1|Pseudomonas_viridiflava_ME3.1b|+|9189..11279|hrcV|-|HrcV
Length=696

 Score =  783 bits (2965),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 475/694 (69%), Positives = 598/694 (87%), Gaps = 3/694 (0%)

Query  1    MNLLITWLNRIALSAMQRSEVVGAvivmsivfmmiiPLPTELIDVLIALNICASSLLIVL  60
            MN +I  LNR+AL+ M R+E+VGAV+VM+IVFMMI+PLPT L+DVLIALNIC SSLLIVL
Sbjct  1    MNGIIHLLNRLALAVMGRTEIVGAVMVMAIVFMMILPLPTWLVDVLIALNICISSLLIVL  60

Query  61   AMYLPKPLAFSTFPAVLLLTTMFRLAISISTTRQILLQQDGGHIVEAFGNYVVGGNLAVG  120
            AMYLP+PLAFSTFPAVLLLTTMFRL++SI+TTR ILLQQD+GHIVEAFG++VVGGNLAVG
Sbjct  61   AMYLPRPLAFSTFPAVLLLTTMFRLSLSIATTRLILLQQDAGHIVEAFGSFVVGGNLAVG  120

Query  121  LVIFLILTVVNFLVITKGSERVAEVAARFTLDAMPGKQMSIDSDLRAGLIEAHQARQRRE  180
            LVIFLILT+VNFLVITKGSERVAEVAARFTLDAMPGKQMSIDSDLRA LI+ ++AR+RRE
Sbjct  121  LVIFLILTIVNFLVITKGSERVAEVAARFTLDAMPGKQMSIDSDLRANLINVREARHRRE  180

Query  181  NLAKESQLFGAMDGAMKFVKGDAIASLVIVFINMIGGFAIGVLQHNMAASDAMHVYSVLT  240
            +L+KESQLFGAMDGAMKFVKGDAIA+LVIVFIN+IGGF+IGVLQ+ M A+DAMH+YSVLT
Sbjct  181  QLSKESQLFGAMDGAMKFVKGDAIAGLVIVFINLIGGFSIGVLQNGMEAGDAMHLYSVLT  240

Query  241  IGDGLIAQIPALLISLTAGMIITRVSADGQKVDANIGREIAEQLTSQPKAWIISSIGMFG  300
            IGDGLIAQIPALLISLTAGMIITRV++D+Q  DANIG+EIAEQLTSQPKAW++SSIGM G
Sbjct  241  IGDGLIAQIPALLISLTAGMIITRVAPDSQTADANIGHEIAEQLTSQPKAWVFSSIGMMG  300

Query  301  FALLPGMPTLVFVAISLASLGSGLFQLWRIKQQGQLDASQSEADNMPAEQNGYQDLRRFN  360
            F+L+PGMPTLVF  I+L  L SGL+QLWRI+Q+   + S + A + ++E NG +D+RRFN
Sbjct  301  FGLIPGMPTLVFACIALLCLFSGLIQLWRIRQKELHQDSIGAASKGAPELNGREDIRRFN  360

Query  361  PTRAYLLLFHPIWQGQPTATALVQNIRRLRNKLVYRFGFTLPSFDIEFSDRLAEDEFQFC  420
            P+RAYLL  H+  QG +    L+Q IR+ RN LV  FG+TLPSFD+EF+D++  DEF+FC
Sbjct  361  PSRAYLLQCHSSHQGTAELDRLIQGIRQRRNTLVHNFGLTLPSFDMEFADHFEPDEFRFC  420

Query  421  VYEIPYVKATFVTDRLAVASAAVEQVDTELATPGPTLRDESQWLWLPLAHVSQQPDDVPR  480
            VYE+P+++ATF   RLAV      ++D + + PG   RDE++W+W+ + +   + ++ + 
Sbjct  421  VYEVPFIRATFTNARLAVDH---REIDEDAGEPGRVERDETRWVWVDIDDPLLKEEEHAG  477

Query  481  WTADELILARMEQAIHRTGSQFIGLQETKSILAWLESEQPELAQELQRIMPLSRFASVLQ  540
             ++ ELIL RM +A++ TG+QFIGLQE+K+IL+WLESEQPELAQELQR +PL+RFA+VLQ
Sbjct  478  VSSLELILERMSRAFQATGPQFIGLQESKAILSWLESEQPELAQELQRTLPLARFAAVLQ  537

Query  541  RLASERVPLRSVRPIAEALIEVGQHERDTLALTDYVRLALKSQICHQYSDENSLAVWLLT  600
            RL++E V+LRSVRPIAE+LIE GQHERD  ALTD VR+ALK+QICHQ  +EN+L  WL+T
Sbjct  538  RLSAELVSLRSVRPIAETLIEQGQHERDLNALTDHVRIALKAQICHQHCEENTLHTWLVT  597

Query  601  PESEELLRDALRQTQNETFFALTQDYASTLLSQLRQAFPPLSSQRSLVLVAQDLRSPLRT  660
            PE+E LLRD+LRQTQNE++FAL  + +++L+ QLR+AFP  +S R+++LVAQDLRSPLR+
Sbjct  598  PETEVLLRDSLRQTQNESYFALEPELGNALVEQLREAFPLQASPRPVLLVAQDLRSPLRS  657

Query  661  LLQDEFHHVPVLSFTELESTLSINVIGRLDLYDS  694
            LL D+FHHVPVLSF+EL +T+ ++V+GR+DL ++
Sbjct  658  LLTDQFHHVPVLSFAELIPTVQVQVLGRIDLQET  691

8) Ser39006_2913 in NC_022268


> AY597281|10|G10|51103113|AAT96256.1|Pseudomonas_viridiflava_ME3.1b|+|9189..11279|hrcV|-|HrcV
Length=696

 Score =  783 bits (2964),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 478/695 (69%), Positives = 599/695 (87%), Gaps = 4/695 (0%)

Query  1    MSLLISWLNRIAISAMQRSEIVGAvivmsivfmmiiPLPTGLIDVLIALNICMSSLLIVL  60
            M+ +I  LNR+A++ M R+EIVGAV+VM+IVFMMI+PLPT L+DVLIALNIC+SSLLIVL
Sbjct  1    MNGIIHLLNRLALAVMGRTEIVGAVMVMAIVFMMILPLPTWLVDVLIALNICISSLLIVL  60

Query  61   AMYLPKPLAFSTFPAVLLLTTMFRLALSISTTRQILLQQDAGHVVEAFGNFVVGGNLTVG  120
            AMYLP+PLAFSTFPAVLLLTTMFRL+LSI+TTR ILLQQDAGH+VEAFG+FVVGGNL+VG
Sbjct  61   AMYLPRPLAFSTFPAVLLLTTMFRLSLSIATTRLILLQQDAGHIVEAFGSFVVGGNLAVG  120

Query  121  LVIFLILTVVNFMVITKGSERVAEVAARFTLDAMPGKQMSIDSDLRAGLIETHQARQRRE  180
            LVIFLILT+VNF+VITKGSERVAEVAARFTLDAMPGKQMSIDSDLRA LI+ ++AR+RRE
Sbjct  121  LVIFLILTIVNFLVITKGSERVAEVAARFTLDAMPGKQMSIDSDLRANLINVREARHRRE  180

Query  181  NLAKESQLFGAMDGAMKFVKGDAIASLVIVFINMLGGFAIGVLQNGMTAGDAMHIYSVLT  240
            +L+KESQLFGAMDGAMKFVKGDAIA+LVIVFIN++GGF+IGVLQNGM AGDAMH+YSVLT
Sbjct  181  QLSKESQLFGAMDGAMKFVKGDAIAGLVIVFINLIGGFSIGVLQNGMEAGDAMHLYSVLT  240

Query  241  IGDGLIAQIPALLISLTAGMIITRVSADGQKVDNNIGREIAEQLTSQPKAWIISSIGMFG  300
            IGDGLIAQIPALLISLTAGMIITRV++D+Q  D NIG+EIAEQLTSQPKAW++SSIGM G
Sbjct  241  IGDGLIAQIPALLISLTAGMIITRVAPDSQTADANIGHEIAEQLTSQPKAWVFSSIGMMG  300

Query  301  FALLPGMPTIVFAVISLISLGSGLFQLWRIKQSGLQADSLLAADNLPAEQNGYQDLRRFN  360
            F+L+PGMPT+VFA I+L+ L SGL+QLWRI+Q  L+ DS+ AA + ++E NG +D+RRFN
Sbjct  301  FGLIPGMPTLVFACIALLCLFSGLIQLWRIRQKELHQDSIGAASKGAPELNGREDIRRFN  360

Query  361  PTRAYLLQFNPVFQHAQAAALLVQEIRRLRNRLVYHFGFTLPSFDIEFNPTVPEDEFQFC  420
            P+RAYLLQ ++  Q +     L+Q IR+ RN LV +FG+TLPSFD+EF      DEF+FC
Sbjct  361  PSRAYLLQCHSSHQGTAELDRLIQGIRQRRNTLVHNFGLTLPSFDMEFADHFEPDEFRFC  420

Query  421  VYEIPLLRATFGSRHVAVEKRLIPEEQQDDTMHPGINARDEHHWLWLAPEHDLLRQDPLP  480
            VYE+P++RATF + ++AV+ R    E ++D+ +PG   RDE +W+W+  ++ LL+++  +
Sbjct  421  VYEVPFIRATFTNARLAVDHR----EIDEDAGEPGRVERDETRWVWVDIDDPLLKEEEHA  476

Query  481  HWDTESLILKRMENAIHRSGSQFIGLQETKSILAWLEGEQPELAQELQRIMPLSRFASVL  540
               +  LIL RM  A++ +G+QFIGLQE+K+IL+WLE+EQPELAQELQR +PL+RFA+VL
Sbjct  477  GVSSLELILERMSRAFQATGPQFIGLQESKAILSWLESEQPELAQELQRTLPLARFAAVL  536

Query  541  QRLASERVPLRSVRPIAEALIEIGQHERDTNALADYVRLELKSQICHQYSQDDNLFVWLL  600
            QRL++E V+LRSVRPIAE+LIE GQHERD NAL+D VR+ LK+QICHQ  +++ L  WL+
Sbjct  537  QRLSAELVSLRSVRPIAETLIEQGQHERDLNALTDHVRIALKAQICHQHCEENTLHTWLV  596

Query  601  TPETEELLRDALRQTQNETFFALAQEYAATLLMQLRQAFPPMAPLSAVILVAQDLRSPLR  660
            TPETE LLRD+LRQTQNE++FAL  E + +L+ QLR+AFP  A+  +V+LVAQDLRSPLR
Sbjct  597  TPETEVLLRDSLRQTQNESYFALEPELGNALVEQLREAFPLQASPRPVLLVAQDLRSPLR  656

Query  661  ALLQDEFHHVPVLSFTELESHLSINVIGRIDLQET  695
            +LL D+FHHVPVLSF+EL + + ++V+GRIDLQET
Sbjct  657  SLLTDQFHHVPVLSFAELIPTVQVQVLGRIDLQET  691

9) PCC21_022840 in NC_018525


> AY597281|10|G10|51103113|AAT96256.1|Pseudomonas_viridiflava_ME3.1b|+|9189..11279|hrcV|-|HrcV
Length=696

 Score =  781 bits (2957),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 474/694 (69%), Positives = 596/694 (86%), Gaps = 3/694 (0%)

Query  1    MNLLIIWLNRIALSAMQRSEVVGAvivmsivfmmiiPLPTGLIDVLIALNICVSSLLIVL  60
            MN +I  LNR+AL+ M R+E+VGAV+VM+IVFMMI+PLPT L+DVLIALNIC+SSLLIVL
Sbjct  1    MNGIIHLLNRLALAVMGRTEIVGAVMVMAIVFMMILPLPTWLVDVLIALNICISSLLIVL  60

Query  61   AMYLPKPLAFSTFPAVLLLTTMFRLAISISTTRQILLQQDGGHIVEAFGNYVVGGNLAVG  120
            AMYLP+PLAFSTFPAVLLLTTMFRL++SI+TTR ILLQQD+GHIVEAFG++VVGGNLAVG
Sbjct  61   AMYLPRPLAFSTFPAVLLLTTMFRLSLSIATTRLILLQQDAGHIVEAFGSFVVGGNLAVG  120

Query  121  LVIFLILTVVNFLVITKGSERVAEVAARFTLDAMPGKQMSIDSDLRAGLIEAHQARQRRE  180
            LVIFLILT+VNFLVITKGSERVAEVAARFTLDAMPGKQMSIDSDLRA LI+ ++AR+RRE
Sbjct  121  LVIFLILTIVNFLVITKGSERVAEVAARFTLDAMPGKQMSIDSDLRANLINVREARHRRE  180

Query  181  NLAKESQLFGAMDGAMKFVKGDAIASLVIVFINMIGGFAIGVLQHNMAASDAMHVYSVLT  240
            +L+KESQLFGAMDGAMKFVKGDAIA+LVIVFIN+IGGF+IGVLQ+ M A+DAMH+YSVLT
Sbjct  181  QLSKESQLFGAMDGAMKFVKGDAIAGLVIVFINLIGGFSIGVLQNGMEAGDAMHLYSVLT  240

Query  241  IGDGLIAQIPALLISLTAGMIITRVSADGQKVDANIGREIAEQLTSQPKAWIISSIGMFG  300
            IGDGLIAQIPALLISLTAGMIITRV++D+Q  DANIG+EIAEQLTSQPKAW++SSIGM G
Sbjct  241  IGDGLIAQIPALLISLTAGMIITRVAPDSQTADANIGHEIAEQLTSQPKAWVFSSIGMMG  300

Query  301  FALLPGMPTLVFVTISLASLGSGLFQLWRIKQQGQLDASQSEADNIPAEQNGYQDLRRFN  360
            F+L+PGMPTLVF  I+L  L SGL+QLWRI+Q+   + S + A + ++E NG +D+RRFN
Sbjct  301  FGLIPGMPTLVFACIALLCLFSGLIQLWRIRQKELHQDSIGAASKGAPELNGREDIRRFN  360

Query  361  PTRAYLLLFHPVWQEQPTATALVQNIRRLRNKLVYRFGFTLPSFDIEFSDRLAEDEFQFC  420
            P+RAYLL  H+  Q  +    L+Q IR+ RN LV  FG+TLPSFD+EF+D++  DEF+FC
Sbjct  361  PSRAYLLQCHSSHQGTAELDRLIQGIRQRRNTLVHNFGLTLPSFDMEFADHFEPDEFRFC  420

Query  421  VYEIPYVKATFVTDRLAIASGAIEPTDANLATPGPTLRDESHWLWLPLAQVAQQPDDVPR  480
            VYE+P+++ATF   RLA+    I+   ++   PG   RDE++W+W+ + +   + ++ + 
Sbjct  421  VYEVPFIRATFTNARLAVDHREIDEDAGE---PGRVERDETRWVWVDIDDPLLKEEEHAG  477

Query  481  WSADELILARMEQAIHRTGSQFIGLQETKSILAWLESEQPELAQELQRIMPLSRFASVLQ  540
             S+ ELIL RM +A++ TG+QFIGLQE+K+IL+WLESEQPELAQELQR +PL+RFA+VLQ
Sbjct  478  VSSLELILERMSRAFQATGPQFIGLQESKAILSWLESEQPELAQELQRTLPLARFAAVLQ  537

Query  541  RLASERVPLRSVRPIAEALIEVGQHERDTLALTDYVRLALKSQICHQYSDENNLAVWLLT  600
            RL++E V+LRSVRPIAE+LIE GQHERD  ALTD VR+ALK+QICHQ  +EN L  WL+T
Sbjct  538  RLSAELVSLRSVRPIAETLIEQGQHERDLNALTDHVRIALKAQICHQHCEENTLHTWLVT  597

Query  601  PESEELLRDALRQTQNETFFALTQDYASTLLGQLRQAFPPLSSQRSLVLVAQDLRSPLRT  660
            PE+E LLRD+LRQTQNE++FAL  + +++L+ QLR+AFP  +S R+++LVAQDLRSPLR+
Sbjct  598  PETEVLLRDSLRQTQNESYFALEPELGNALVEQLREAFPLQASPRPVLLVAQDLRSPLRS  657

Query  661  LLQDEFHHVPVLSFTELESTLSINVIGRLDLYDS  694
            LL D+FHHVPVLSF+EL +T+ ++V+GR+DL ++
Sbjct  658  LLTDQFHHVPVLSFAELIPTVQVQVLGRIDLQET  691

10) Dd586_1888 in NC_013592


> AY597281|10|G10|51103113|AAT96256.1|Pseudomonas_viridiflava_ME3.1b|+|9189..11279|hrcV|-|HrcV
Length=696

 Score =  765 bits (2894),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 478/694 (69%), Positives = 596/694 (86%), Gaps = 5/694 (0%)

Query  1    MAVLIAWLNRFAMSAMQRSEvvgavivmaivfmmiiPLPTDLIDVLIALNICISSLLIVL  60
            M  +I  LNR+A++ M R+E+VGAV+VMAIVFMMI+PLPT L+DVLIALNICISSLLIVL
Sbjct  1    MNGIIHLLNRLALAVMGRTEIVGAVMVMAIVFMMILPLPTWLVDVLIALNICISSLLIVL  60

Query  61   AMYLPKPLAFSTFPAVLLLTTMFRLALSISTTRQILLQQDAGHVVEAFGNFVVGGNLAVG  120
            AMYLP+PLAFSTFPAVLLLTTMFRL+LSI+TTR ILLQQDAGH+VEAFG+FVVGGNLAVG
Sbjct  61   AMYLPRPLAFSTFPAVLLLTTMFRLSLSIATTRLILLQQDAGHIVEAFGSFVVGGNLAVG  120

Query  121  LVIFLILTVVNFLVITKGSERVAEVAARFTLDAMPGKQMSIDSDLRAGLIDSQQARQRRE  180
            LVIFLILT+VNFLVITKGSERVAEVAARFTLDAMPGKQMSIDSDLRA LI+ ++AR+RRE
Sbjct  121  LVIFLILTIVNFLVITKGSERVAEVAARFTLDAMPGKQMSIDSDLRANLINVREARHRRE  180

Query  181  NLAKESQLFGAMDGAMKFVKGDAIAGLVIVFINMIGGFAIGVLQNGMAAGDAMHIYSVLT  240
            +L+KESQLFGAMDGAMKFVKGDAIAGLVIVFIN+IGGF+IGVLQNGM AGDAMH+YSVLT
Sbjct  181  QLSKESQLFGAMDGAMKFVKGDAIAGLVIVFINLIGGFSIGVLQNGMEAGDAMHLYSVLT  240

Query  241  IGDGLIAQIPALLISLTAGMIITRVSADGQQTDNNIGREIAEQLTSQPKAWIISSVGMLG  300
            IGDGLIAQIPALLISLTAGMIITRV++D+Q +D NIG+EIAEQLTSQPKAW++SS+GM+G
Sbjct  241  IGDGLIAQIPALLISLTAGMIITRVAPDSQTADANIGHEIAEQLTSQPKAWVFSSIGMMG  300

Query  301  FALLPGMPTLVFLMISLVSLGSGLFQLWRAKQNGL-QDALLANDNLPADQNGYQDLRRFN  359
            F+L+PGMPTLVF  I+L+ L SGL+QLWR +Q+ L QD++ A  + +++ NG +D+RRFN
Sbjct  301  FGLIPGMPTLVFACIALLCLFSGLIQLWRIRQKELHQDSIGAASKGAPELNGREDIRRFN  360

Query  360  PTRAYLLQFHTVWQGTAAAAVLVQNIRRLRNRLVYHFGFTLPSFDIEFTPTVPEDEFRFC  419
            P+RAYLLQ H+  QGTA    L+Q IR+ RN LV +FG+TLPSFD+EF+     DEFRFC
Sbjct  361  PSRAYLLQCHSSHQGTAELDRLIQGIRQRRNTLVHNFGLTLPSFDMEFADHFEPDEFRFC  420

Query  420  VYEIPQLRASFGVPLLAVSREQLPQDGQDDGMIPGLAARDEHHLLWMTPEHPMLQQPQLC  479
            VYE+P +RA+F  + LAV + ++ +D+ +    PG   RDE + +W+  ++P+L++ +  
Sbjct  421  VYEVPFIRATFTNARLAVDHREIDEDAGE----PGRVERDETRWVWVDIDDPLLKEEEHA  476

Query  480  PWNAEALILMRMENAMHRSGAQFIGLQETKSILAWLESEQPELAQELQRIMPLSRFASVL  539
              ++  LIL RM  A + +G+QFIGLQE+K+IL+WLESEQPELAQELQR +PL+RFA+VL
Sbjct  477  GVSSLELILERMSRAFQATGPQFIGLQESKAILSWLESEQPELAQELQRTLPLARFAAVL  536

Query  540  QRLASERVPLRSVRPIAEALIDIGQHERDINALTDYVRLELKAQICHQYSQEDSLTVWLL  599
            QRL++E V+LRSVRPIAE+LI+ GQHERD+NALTD VR+ LKAQICHQ  +E++L  WL+
Sbjct  537  QRLSAELVSLRSVRPIAETLIEQGQHERDLNALTDHVRIALKAQICHQHCEENTLHTWLV  596

Query  600  TPETEELLRDALRQTQSDTFFALNQEYAATLLGQLRRAFPPMLPSSALILVAQDLRSPLR  659
            TPETE LLRD+LRQTQ++++FAL+ E + +L+ QLR AFP   ++ +++LVAQDLRSPLR
Sbjct  597  TPETEVLLRDSLRQTQNESYFALEPELGNALVEQLREAFPLQASPRPVLLVAQDLRSPLR  656

Query  660  ILLQDEFHHVPVLSFTELESHLSINVAGRIDLQD  693
             LL D+FHHVPVLSF+EL + + ++V GRIDLQ+
Sbjct  657  SLLTDQFHHVPVLSFAELIPTVQVQVLGRIDLQE  690

11) hrcV in NC_005773


> AY597281|10|G10|51103113|AAT96256.1|Pseudomonas_viridiflava_ME3.1b|+|9189..11279|hrcV|-|HrcV
Length=696

 Score =  765 bits (2894),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 458/696 (66%), Positives = 590/696 (85%), Gaps = 12/696 (1%)

Query  1    MNQVINFLNMIALSAMRRSELVGAFFVIAIVFMMITPLPTGLVDVLIAVNICISCLLIML  60
            MN +I++LN +AL+ M R+E+VGA  V+AIVFMMI PLPT LVDVLIA+NICIS LLI+L
Sbjct  1    MNGIIHLLNRLALAVMGRTEIVGAVMVMAIVFMMILPLPTWLVDVLIALNICISSLLIVL  60

Query  61   AMHLPRPLAFSTFPAVLLLTTMFRLALSISTTRLILLNQDAGHIVEAFGQFVVGGNLAVG  120
            AM LPRPLAFSTFPAVLLLTTMFRL+LSI+TTRLILL+QDAGHIVEAFG FVVGGNLAVG
Sbjct  61   AMYLPRPLAFSTFPAVLLLTTMFRLSLSIATTRLILLQQDAGHIVEAFGSFVVGGNLAVG  120

Query  121  LVIFLILTVVNFLVITKGSERVAEVGARFTLDAMPGKQMSIDSDLRANLITVQEARKRRA  180
            LVIFLILT+VNFLVITKGSERVAEV+ARFTLDAMPGKQMSIDSDLRANLI V+EAR RR 
Sbjct  121  LVIFLILTIVNFLVITKGSERVAEVAARFTLDAMPGKQMSIDSDLRANLINVREARHRRE  180

Query  181  ELNKESQLFGAMDGAMKFVNGDAIASLIIVAINMIGGISIGVLQHNMSAGDALQLYTVLT  240
            +L+KESQLFGAMDGAMKFV+GDAIA+L+IV IN+IGG+SIGVLQ+ M AGDA++LY+VLT
Sbjct  181  QLSKESQLFGAMDGAMKFVKGDAIAGLVIVFINLIGGFSIGVLQNGMEAGDAMHLYSVLT  240

Query  241  IGDGLIAQIPALLISVTCGMIITRVPNTEASAEANIGREIAEQITSQPKAWIIAAVAMLG  300
            IGDGLIAQIPALLIS+T GMIITRV+    +A+ANIG+EIAEQ+TSQPKAW++++++M+G
Sbjct  241  IGDGLIAQIPALLISLTAGMIITRVAPDSQTADANIGHEIAEQLTSQPKAWVFSSIGMMG  300

Query  301  FAALPGMPTGVFITIAIICGAGGMLQLQRARPKPDEQRATAV----APEMNGKEDLRTFS  356
            F+ +PGMPT VF  IA++C  +G++QL R R K  +Q + +     APE+NG+ED+R F+
Sbjct  301  FGLIPGMPTLVFACIALLCLFSGLIQLWRIRQKELHQDSIGAASKGAPELNGREDIRRFN  360

Query  357  PSRQFVLQFHPG-QDSAQIEALISEIRRRRNRLVVQYGLTLPSFIIEHADHLPPDEFRFT  415
            PSR ++LQ H++ Q++A+++ LI  IR+RRN LV ++GLTLPSF +E ADH+ PDEFRF 
Sbjct  361  PSRAYLLQCHSSHQGTAELDRLIQGIRQRRNTLVHNFGLTLPSFDMEFADHFEPDEFRFC  420

Query  416  VYDVPMLKATFTQSHVAVDARQLGGENLPAAIPGNTDRQEDQWVWLPAEQC----GELNP  471
            VY+VP ++ATFT++++AVD R+++ +   A+ PG  +R+E +WVW+  ++      E   
Sbjct  421  VYEVPFIRATFTNARLAVDHREIDED---AGEPGRVERDETRWVWVDIDDPLLKEEEHAG  477

Query  472  VSAMTLIVERMERALQSCAPQFIGLQETKAILSWLESEQPELAQEIQRVLTLTRFSAVLQ  531
            VS++ LI+ERM RA+Q+ +PQFIGLQE+KAILSWLESEQPELAQE+QR L L+RF+AVLQ
Sbjct  478  VSSLELILERMSRAFQATGPQFIGLQESKAILSWLESEQPELAQELQRTLPLARFAAVLQ  537

Query  532  RLASERVPLRAIRLIAETLIEHCQHERDTNVLTDYVRIALKSQIYHQYCGAEGLQVWLLT  591
            RL++E V+LR++R IAETLIE+ QHERD N LTD VRIALK+QI HQ C  + L+ WL+T
Sbjct  538  RLSAELVSLRSVRPIAETLIEQGQHERDLNALTDHVRIALKAQICHQHCEENTLHTWLVT  597

Query  592  PESEGLLRDGLRQTQTETFFALSNEISQMLVQQMNIAFPVRAPEQAVLLVAQDLRSPLRT  651
            PE+E LLRD+LRQTQ E++FAL  E+++ LV+Q+  AFP++A+ ++VLLVAQDLRSPLR+
Sbjct  598  PETEVLLRDSLRQTQNESYFALEPELGNALVEQLREAFPLQASPRPVLLVAQDLRSPLRS  657

Query  652  LLREEFYHVPVLSFAEISNAAKVKVMGRFDLEDDLE  687
            LL ++F HVPVLSFAE+  + +V+V+GR+DL++  +
Sbjct  658  LLTDQFHHVPVLSFAELIPTVQVQVLGRIDLQETYD  693

12) hrpI in NC_004547


> AY597281|10|G10|51103113|AAT96256.1|Pseudomonas_viridiflava_ME3.1b|+|9189..11279|hrcV|-|HrcV
Length=696

 Score =  764 bits (2892),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 473/695 (69%), Positives = 598/695 (87%), Gaps = 5/695 (0%)

Query  1    MNLLIIWLNRIALSAMQRSEVVGAvivmsivfmmiiPLPTGLIDVLIALNICASSLLIVL  60
            MN +I  LNR+AL+ M R+E+VGAV+VM+IVFMMI+PLPT L+DVLIALNIC SSLLIVL
Sbjct  1    MNGIIHLLNRLALAVMGRTEIVGAVMVMAIVFMMILPLPTWLVDVLIALNICISSLLIVL  60

Query  61   AMYLPKPLAFSTFPAVLLLTTMFRLAISISTTRQILLQQDGGHIVEAFGNYVVGGNLAVG  120
            AMYLP+PLAFSTFPAVLLLTTMFRL++SI+TTR ILLQQD+GHIVEAFG++VVGGNLAVG
Sbjct  61   AMYLPRPLAFSTFPAVLLLTTMFRLSLSIATTRLILLQQDAGHIVEAFGSFVVGGNLAVG  120

Query  121  LVIFLILTVVNFMVITKGSERVAEVAARFTLDAMPGKQMSIDSDLRAGLIEAHQARQRRE  180
            LVIFLILT+VNF+VITKGSERVAEVAARFTLDAMPGKQMSIDSDLRA LI+ ++AR+RRE
Sbjct  121  LVIFLILTIVNFLVITKGSERVAEVAARFTLDAMPGKQMSIDSDLRANLINVREARHRRE  180

Query  181  NLAKESQLFGAMDGAMKFVKGDAIASLVIVFINMIGGFAIGVLQHNMAASDAMHVYSVLT  240
            +L+KESQLFGAMDGAMKFVKGDAIA+LVIVFIN+IGGF+IGVLQ+ M A+DAMH+YSVLT
Sbjct  181  QLSKESQLFGAMDGAMKFVKGDAIAGLVIVFINLIGGFSIGVLQNGMEAGDAMHLYSVLT  240

Query  241  IGDGLIAQIPALLISLTAGMIITRVSADGQKVDANIGREIAEQLTSQPKAWIISSIGMFG  300
            IGDGLIAQIPALLISLTAGMIITRV++D+Q  DANIG+EIAEQLTSQPKAW++SSIGM G
Sbjct  241  IGDGLIAQIPALLISLTAGMIITRVAPDSQTADANIGHEIAEQLTSQPKAWVFSSIGMMG  300

Query  301  FALLPGMPTLVFVAIslsslgsglFQLWRIKQQGQLDANQLEADNMPAEQ-NGYQDLRRF  359
            F+L+PGMPTLVF  I+L  L SGL+QLWRI+Q+ +L+ + + A +  A + NG +D+RRF
Sbjct  301  FGLIPGMPTLVFACIALLCLFSGLIQLWRIRQK-ELHQDSIGAASKGAPELNGREDIRRF  359

Query  360  NPTRAYLLLFHPVWQGQPTATVLVQNIRRLRNRLVYRFGFTLPSFDIEFSDRLAEDEFQF  419
            NP+RAYLL  H+  QG +    L+Q IR+ RN LV  FG+TLPSFD+EF+D++  DEF+F
Sbjct  360  NPSRAYLLQCHSSHQGTAELDRLIQGIRQRRNTLVHNFGLTLPSFDMEFADHFEPDEFRF  419

Query  420  CVYEIPYVKATFVTDQLAVANGAIEQVDATIATPGHTLRDESQWLWLPLAHVAQQPDDIP  479
            CVYE+P+++ATF   +LAV +    ++D   + PG+  RDE++W+W+ + +   + ++ +
Sbjct  420  CVYEVPFIRATFTNARLAVDH---REIDEDAGEPGRVERDETRWVWVDIDDPLLKEEEHA  476

Query  480  RWTSDELILARMEQAIHRTGSQFIGLQETKSILAWLESEQPELAQELQRIMPLSRFASVL  539
              +S ELIL RM +A++ TG+QFIGLQE+K+IL+WLESEQPELAQELQR +PL+RFA+VL
Sbjct  477  GVSSLELILERMSRAFQATGPQFIGLQESKAILSWLESEQPELAQELQRTLPLARFAAVL  536

Query  540  QRLASERVPLRSVRPIAEALIEVGQHERDTLALTDYVRLALKSQICHQYSDENNLAVWLL  599
            QRL++E V+LRSVRPIAE+LIE GQHERD  ALTD VR+ALK+QICHQ  +EN L  WL+
Sbjct  537  QRLSAELVSLRSVRPIAETLIEQGQHERDLNALTDHVRIALKAQICHQHCEENTLHTWLV  596

Query  600  TPESEELLRDALRQTQNETFFALTQDYASTLLSQLRQAFPPFSSQSSLVLVAQDLRSPLR  659
            TPE+E LLRD+LRQTQNE++FAL  + +++L+ QLR+AFP  +S  +++LVAQDLRSPLR
Sbjct  597  TPETEVLLRDSLRQTQNESYFALEPELGNALVEQLREAFPLQASPRPVLLVAQDLRSPLR  656

Query  660  TLLQDEFHHVPVLSFTELESTLSINVIGRLDLYDS  694
            +LL D+FHHVPVLSF+EL +T+ ++V+GR+DL ++
Sbjct  657  SLLTDQFHHVPVLSFAELIPTVQVQVLGRIDLQET  691

13) Psyr_1215 in NC_007005


> AY597281|10|G10|51103113|AAT96256.1|Pseudomonas_viridiflava_ME3.1b|+|9189..11279|hrcV|-|HrcV
Length=696

 Score =  758 bits (2869),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 450/688 (66%), Positives = 583/688 (85%), Gaps = 12/688 (1%)

Query  1    MNRVINFLNMVALSAMRRSELVGAFFVIAIVFMMITPLPTGLIDVLIAVNICISCLLIML  60
            MN +I++LN +AL+ M R+E+VGA  V+AIVFMMI PLPT L+DVLIA+NICIS LLI+L
Sbjct  1    MNGIIHLLNRLALAVMGRTEIVGAVMVMAIVFMMILPLPTWLVDVLIALNICISSLLIVL  60

Query  61   AMHLPRPLAFSTFPAVLLLTTMFRLALSVSTTRLILLNQDAGHIVEAFGQFVVGGNLAVG  120
            AM LPRPLAFSTFPAVLLLTTMFRL+LS++TTRLILL+QDAGHIVEAFG FVVGGNLAVG
Sbjct  61   AMYLPRPLAFSTFPAVLLLTTMFRLSLSIATTRLILLQQDAGHIVEAFGSFVVGGNLAVG  120

Query  121  LVIFLILTVVNFLVITKGSERVAEVGARFTLDAMPGKQMSIDSDLRANLITVHEARKRRA  180
            LVIFLILT+VNFLVITKGSERVAEV+ARFTLDAMPGKQMSIDSDLRANLI V+EAR RR 
Sbjct  121  LVIFLILTIVNFLVITKGSERVAEVAARFTLDAMPGKQMSIDSDLRANLINVREARHRRE  180

Query  181  ELNKESQLFGAMDGAMKFVNGDAIASLIIVAINMIGGISIGVLQHNMAAGDALQLYTVLT  240
            +L+KESQLFGAMDGAMKFV+GDAIA+L+IV IN+IGG+SIGVLQ+ M AGDA++LY+VLT
Sbjct  181  QLSKESQLFGAMDGAMKFVKGDAIAGLVIVFINLIGGFSIGVLQNGMEAGDAMHLYSVLT  240

Query  241  IGDGLIAQIPALLISVTSGMIITRVPNTEAGVEANIGREIAEQITSQPKAWIIASVAMLG  300
            IGDGLIAQIPALLIS+T+GMIITRV+      +ANIG+EIAEQ+TSQPKAW+++S++M+G
Sbjct  241  IGDGLIAQIPALLISLTAGMIITRVAPDSQTADANIGHEIAEQLTSQPKAWVFSSIGMMG  300

Query  301  FAALPGMPTGVFITIAIICGAGGLLQLQRAKPKADEQRT----ATVAPEMNGKEDLRTFS  356
            F+ +PGMPT VF  IA++C  +GL+QL R + K  +Q +    +  APE+NG+ED+R F+
Sbjct  301  FGLIPGMPTLVFACIALLCLFSGLIQLWRIRQKELHQDSIGAASKGAPELNGREDIRRFN  360

Query  357  PSRQFVLQFHPGQD-SAQIEALVSEIRKRRNRLVVQYGLTLPSFIIEHVDDIAPDEFRFT  415
            PSR ++LQ H++++ +A+++ L+  IR+RRN LV ++GLTLPSF +E  D++ PDEFRF 
Sbjct  361  PSRAYLLQCHSSHQGTAELDRLIQGIRQRRNTLVHNFGLTLPSFDMEFADHFEPDEFRFC  420

Query  416  VYDVPMLKATFTQSHVAVEARQLEGENLPAAIPGNTDRQEDQWVWLPAEQS----GELNP  471
            VY+VP ++ATFT++++AV+ R+++ +   A+ PG  +R+E +WVW+  +++     E   
Sbjct  421  VYEVPFIRATFTNARLAVDHREIDED---AGEPGRVERDETRWVWVDIDDPLLKEEEHAG  477

Query  472  VSSTTLIIERMERALQSCAPQFIGLQETKAILGWLESEQPELAQEMQRVLTLTRFSAVLQ  531
            VSS  LI+ERM RA+Q+ +PQFIGLQE+KAIL+WLESEQPELAQE+QR L L+RF+AVLQ
Sbjct  478  VSSLELILERMSRAFQATGPQFIGLQESKAILSWLESEQPELAQELQRTLPLARFAAVLQ  537

Query  532  RLASECVPLRAIRVIAETLIEHCQHERDTNVLTDYVRIALKSQIYHQYCGAEGLQVWLLT  591
            RL++E V+LR++R IAETLIE+ QHERD N LTD VRIALK+QI HQ C  + L+ WL+T
Sbjct  538  RLSAELVSLRSVRPIAETLIEQGQHERDLNALTDHVRIALKAQICHQHCEENTLHTWLVT  597

Query  592  PESEGLLRDGLRQTQTETFFALSNEISQMLVQQLHIAFPVRAPEQAVLLVAQDLRSPLRT  651
            PE+E LLRD+LRQTQ E++FAL  E+++ LV+QL+ AFP++A+ ++VLLVAQDLRSPLR+
Sbjct  598  PETEVLLRDSLRQTQNESYFALEPELGNALVEQLREAFPLQASPRPVLLVAQDLRSPLRS  657

Query  652  LLREEFYHVPVLSFAEISNAAKVKVMGR  679
            LL ++F HVPVLSFAE+  + +V+V+GR
Sbjct  658  LLTDQFHHVPVLSFAELIPTVQVQVLGR  685

14) hrcV in NC_004578


> AY597281|10|G10|51103113|AAT96256.1|Pseudomonas_viridiflava_ME3.1b|+|9189..11279|hrcV|-|HrcV
Length=696

 Score =  754 bits (2853),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 459/699 (66%), Positives = 594/699 (85%), Gaps = 12/699 (1%)

Query  1    MNQIINFLNMVALSAMRRSEvvgaffviaivfMMITPLPTGLVDVLIAVNICISCLLIML  60
            MN II++LN +AL+ M R+E+VGA  V+AIVFMMI PLPT LVDVLIA+NICIS LLI+L
Sbjct  1    MNGIIHLLNRLALAVMGRTEIVGAVMVMAIVFMMILPLPTWLVDVLIALNICISSLLIVL  60

Query  61   AMHLPRPLAFSTFPAVLLLTTMFRLALSISTTRLILLNQDAGHIVEAFGQFVVGGNLAVG  120
            AM LPRPLAFSTFPAVLLLTTMFRL+LSI+TTRLILL+QDAGHIVEAFG FVVGGNLAVG
Sbjct  61   AMYLPRPLAFSTFPAVLLLTTMFRLSLSIATTRLILLQQDAGHIVEAFGSFVVGGNLAVG  120

Query  121  LVIFLILTVVNFLVITKGSERVAEVGARFTLDAMPGKQMSIDSDLRANLISVYEARNRRS  180
            LVIFLILT+VNFLVITKGSERVAEV+ARFTLDAMPGKQMSIDSDLRANLI+V EAR+RR 
Sbjct  121  LVIFLILTIVNFLVITKGSERVAEVAARFTLDAMPGKQMSIDSDLRANLINVREARHRRE  180

Query  181  ELNKESQLFGAMDGAMKFVNGDAIASLIIVAINMIGGISIGVVQHGMTAGDALQLYTVLT  240
            +L+KESQLFGAMDGAMKFV+GDAIA+L+IV IN+IGG+SIGV+Q+GM AGDA++LY+VLT
Sbjct  181  QLSKESQLFGAMDGAMKFVKGDAIAGLVIVFINLIGGFSIGVLQNGMEAGDAMHLYSVLT  240

Query  241  IGDGLIAQIPALLISVTCGMIITRVPNTEAGVEANIGREIAEQITSQPKAWIIAAVAMLG  300
            IGDGLIAQIPALLIS+T GMIITRV+      +ANIG+EIAEQ+TSQPKAW++++++M+G
Sbjct  241  IGDGLIAQIPALLISLTAGMIITRVAPDSQTADANIGHEIAEQLTSQPKAWVFSSIGMMG  300

Query  301  FAALPGMPTGVFITIAIICGAGGMLQLQRAKPKAEEQGAVAV----APEMNGKEDLRTFS  356
            F+ +PGMPT VF  IA++C  +G++QL R + K  +Q++++     APE+NG+ED+R F+
Sbjct  301  FGLIPGMPTLVFACIALLCLFSGLIQLWRIRQKELHQDSIGAASKGAPELNGREDIRRFN  360

Query  357  PSRQFVLQFHPGQNSAL-VDALVSEIRQRRNRLVVQFGLTLPSFIIEYVDHLQPDEFRFT  415
            PSR ++LQ H++++++  +D L+  IRQRRN LV +FGLTLPSF +E+ DH++PDEFRF 
Sbjct  361  PSRAYLLQCHSSHQGTAELDRLIQGIRQRRNTLVHNFGLTLPSFDMEFADHFEPDEFRFC  420

Query  416  VYDVPMLKATFTQTHVAVDVRQFNGEDVPAAISGTTDRQEDQWVWLPAEQ----GGELAT  471
            VY+VP ++ATFT++++AVD R+++ +   A+ +G  +R+E +WVW+  ++      E A 
Sbjct  421  VYEVPFIRATFTNARLAVDHREIDED---AGEPGRVERDETRWVWVDIDDPLLKEEEHAG  477

Query  472  VSSMTLITERMERALQSCGPQFIGLQETKAILGWLESEQPELAQEMQRVLTLTRFSAVLQ  531
            VSS+ LI ERM RA+Q+ GPQFIGLQE+KAIL+WLESEQPELAQE+QR L L+RF+AVLQ
Sbjct  478  VSSLELILERMSRAFQATGPQFIGLQESKAILSWLESEQPELAQELQRTLPLARFAAVLQ  537

Query  532  RLASECVPLRAIRVIAETLIEHCQHERDTNVLTDYVRIALKSQIYHQYCGADGLQVWLLT  591
            RL++E V+LR++R IAETLIE+ QHERD N LTD VRIALK+QI HQ C  + L+ WL+T
Sbjct  538  RLSAELVSLRSVRPIAETLIEQGQHERDLNALTDHVRIALKAQICHQHCEENTLHTWLVT  597

Query  592  PESEGLLRDGLRQTQTETFFALSNDISQMLVQQLHIAFPLRAPEQAVLLVAQDLRSPLRT  651
            PE+E LLRD+LRQTQ E++FAL  ++++ LV+QL+ AFPL+A+ ++VLLVAQDLRSPLR+
Sbjct  598  PETEVLLRDSLRQTQNESYFALEPELGNALVEQLREAFPLQASPRPVLLVAQDLRSPLRS  657

Query  652  LLREEFYHVPVLSFAEISNAAKVRVMGRFDLEDDLEPMD  690
            LL ++F HVPVLSFAE+  + +V+V+GR+DL++  + M 
Sbjct  658  LLTDQFHHVPVLSFAELIPTVQVQVLGRIDLQETYDLMA  696

15) Dd1591_1891 in NC_012912


> AY597281|10|G10|51103113|AAT96256.1|Pseudomonas_viridiflava_ME3.1b|+|9189..11279|hrcV|-|HrcV
Length=696

 Score =  738 bits (2792),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 478/697 (69%), Positives = 594/697 (86%), Gaps = 5/697 (0%)

Query  1    MAILIVWLNRFAISAMQRSEvvgavivmaivfmmiiPLPTGLIDVLIAFNICISSLLIVL  60
            M  +I  LNR+A++ M R+E+VGAV+VMAIVFMMI+PLPT L+DVLIA+NICISSLLIVL
Sbjct  1    MNGIIHLLNRLALAVMGRTEIVGAVMVMAIVFMMILPLPTWLVDVLIALNICISSLLIVL  60

Query  61   AMYLPKPLAFSTFPAVLLLTTMFRLALSISTTRQILLQQDAGHVVEAFGNFVVGGNLAVG  120
            AMYLP+PLAFSTFPAVLLLTTMFRL+LSI+TTR ILLQQDAGH+VEAFG+FVVGGNLAVG
Sbjct  61   AMYLPRPLAFSTFPAVLLLTTMFRLSLSIATTRLILLQQDAGHIVEAFGSFVVGGNLAVG  120

Query  121  LVIFMILTVVNFLVITKGSERVAEVAARFTLDAMPGKQMSIDSDLRAGLIDSQQARQRRE  180
            LVIF+ILT+VNFLVITKGSERVAEVAARFTLDAMPGKQMSIDSDLRA LI+ ++AR+RRE
Sbjct  121  LVIFLILTIVNFLVITKGSERVAEVAARFTLDAMPGKQMSIDSDLRANLINVREARHRRE  180

Query  181  NLAKESQLFGAMDGAMKFVKGDAIASLVIVFINMIGGFAIGVLQNGMAAGDAMHIYSVLT  240
            +L+KESQLFGAMDGAMKFVKGDAIA+LVIVFIN+IGGF+IGVLQNGM AGDAMH+YSVLT
Sbjct  181  QLSKESQLFGAMDGAMKFVKGDAIAGLVIVFINLIGGFSIGVLQNGMEAGDAMHLYSVLT  240

Query  241  IGDGLIAQIPALLISLTAGMIITRVSADGQKTDNNIGREIAEQLTSQPKAWIISSVGMLG  300
            IGDGLIAQIPALLISLTAGMIITRV++D+Q +D NIG+EIAEQLTSQPKAW++SS+GM+G
Sbjct  241  IGDGLIAQIPALLISLTAGMIITRVAPDSQTADANIGHEIAEQLTSQPKAWVFSSIGMMG  300

Query  301  FALLPGMPTLVFllislaslgsglFQLWRAKQSg-lqdalladdglpadqNGYQDLRRFN  359
            F+L+PGMPTLVF  I+L  L SGL+QLWR +Q    QD++ A    +++ NG +D+RRFN
Sbjct  301  FGLIPGMPTLVFACIALLCLFSGLIQLWRIRQKELHQDSIGAASKGAPELNGREDIRRFN  360

Query  360  PTRAYLLQFHTVWQGAAAAALLVQEIRRLRNRLVYHFGFTLPSFDIEFTPNVPEDEFRFC  419
            P+RAYLLQ H+  QG+A    L+Q IR+ RN LV +FG+TLPSFD+EF+ +   DEFRFC
Sbjct  361  PSRAYLLQCHSSHQGTAELDRLIQGIRQRRNTLVHNFGLTLPSFDMEFADHFEPDEFRFC  420

Query  420  VYEIPQLRASFGVPLLAVPRGQMPEDALDDGMMLGLATRDEHHLLWLTPEHPMLQQPELS  479
            VYE+P +RA+F  + LAV + ++ EDA + G +     RDE + +W+  ++P+L++ E +
Sbjct  421  VYEVPFIRATFTNARLAVDHREIDEDAGEPGRV----ERDETRWVWVDIDDPLLKEEEHA  476

Query  480  PWSPDALILSRMENAIHRSGAQFIGLQETKSILAWLESEQPELAQELQRIMPLSRFASVL  539
              S+  LIL RM  A++ +G+QFIGLQE+K+IL+WLESEQPELAQELQR +PL+RFA+VL
Sbjct  477  GVSSLELILERMSRAFQATGPQFIGLQESKAILSWLESEQPELAQELQRTLPLARFAAVL  536

Query  540  QRLASERVPLRSVRPIAEALIDIGQHERDINALTDYVRLELKAQICHQYSQDDSLTVWLL  599
            QRL++E V+LRSVRPIAE+LI+ GQHERD+NALTD VR+ LKAQICHQ  ++++L  WL+
Sbjct  537  QRLSAELVSLRSVRPIAETLIEQGQHERDLNALTDHVRIALKAQICHQHCEENTLHTWLV  596

Query  600  TPETEELLRDALRQTQNETFFALTQEYAATLLGQLRRAFPPMMAPSSLILVAQDLRSPLR  659
            TPETE LLRD+LRQTQNE++FAL  E + +L+ QLR AFP   +P +++LVAQDLRSPLR
Sbjct  597  TPETEVLLRDSLRQTQNESYFALEPELGNALVEQLREAFPLQASPRPVLLVAQDLRSPLR  656

Query  660  ILLQDEFHHVPVLSFTELESHLSINVAGRIDLLDRID  696
             LL D+FHHVPVLSF+EL + + ++V GRIDL +  D
Sbjct  657  SLLTDQFHHVPVLSFAELIPTVQVQVLGRIDLQETYD  693

16) D781_3944 in NC_020064


> AY597281|10|G10|51103113|AAT96256.1|Pseudomonas_viridiflava_ME3.1b|+|9189..11279|hrcV|-|HrcV
Length=696

 Score =  734 bits (2778),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 432/699 (62%), Positives = 591/699 (85%), Gaps = 7/699 (1%)

Query  1    MNSLFAILNKIAISAMQRSEIVGAAFALALVFMLIVPLPLGLIDMLIAVNICLSSLLIVL  60
            MN+++ +LN++A++ M R+EIVGA   +A+VFM+I+PLP  L+D+LIA+NIC+SSLLIVL
Sbjct  1    MNGIIHLLNRLALAVMGRTEIVGAVMVMAIVFMMILPLPTWLVDVLIALNICISSLLIVL  60

Query  61   AMYLPKPLAFSTFPAVLLLTTMFRLALSISVTRQILIQQDAGHIVEAFGNFVVGGNLAVG  120
            AMYLP+PLAFSTFPAVLLLTTMFRL+LSI+ TR IL+QQDAGHIVEAFG+FVVGGNLAVG
Sbjct  61   AMYLPRPLAFSTFPAVLLLTTMFRLSLSIATTRLILLQQDAGHIVEAFGSFVVGGNLAVG  120

Query  121  MVMFLILTVVNFLVITKGSERVAEVAARFTLDAMPGKQMSIDSDLRAGLIDVHQARNRRN  180
            +V+FLILT+VNFLVITKGSERVAEVAARFTLDAMPGKQMSIDSDLRA LI+V++AR+RR+
Sbjct  121  LVIFLILTIVNFLVITKGSERVAEVAARFTLDAMPGKQMSIDSDLRANLINVREARHRRE  180

Query  181  ELAKESQLFGAMDGAMKFVKGDAIAGLVILCINLIGGFSIGVLQLDMAPGDAMHTYSILT  240
            +L+KESQLFGAMDGAMKFVKGDAIAGLVI+ INLIGGFSIGVLQ +M +GDAMH YS+LT
Sbjct  181  QLSKESQLFGAMDGAMKFVKGDAIAGLVIVFINLIGGFSIGVLQNGMEAGDAMHLYSVLT  240

Query  241  IGDGLIAQIPALLISLTAGMIITRVSSESDSTETPNVGREIAEQLTSQPKAWILASMGMI  300
            IGDGLIAQIPALLISLTAGMIITRV+++S+++++ N+G+EIAEQLTSQPKAW+++S+GM+
Sbjct  241  IGDGLIAQIPALLISLTAGMIITRVAPDSQTADA-NIGHEIAEQLTSQPKAWVFSSIGMM  299

Query  301  GFALVPGMPGVVFSLLALITLGGGGFQVWRARQEMLLAKPQIENEVIPPELNGREDLRQF  360
            GF+L+PGMP +VF+ +AL+ L +G +Q+WR RQ  L   +       +PELNGRED+R+F
Sbjct  300  GFGLIPGMPTLVFACIALLCLFSGLIQLWRIRQKELHQDSIGAASKGAPELNGREDIRRF  359

Query  361  NPTRPWLIQFHTSRRGAAETLDLVQEIRRLRNRIVYHFGFTLPAFDIEFTDKQPVDEFRF  420
            NP+R+ L+Q H+S++G+AE   L+Q IR+ RN +V +FG+TLP+FD+EF+D    DEFRF
Sbjct  360  NPSRAYLLQCHSSHQGTAELDRLIQGIRQRRNTLVHNFGLTLPSFDMEFADHFEPDEFRF  419

Query  421  SVYEIPKVVGTFDSALTALDVRQLESLSEAEREGAVPGDEARGEEDYLWLAAGHPLLARE  480
             VYE+P + +TF +A  A+D R+++       +++ PG   R+E   +W+  ++PLL  E
Sbjct  420  CVYEVPFIRATFTNARLAVDHREIDE------DAGEPGRVERDETRWVWVDIDDPLLKEE  473

Query  481  DLTRHSAGELLLTRMEDAIHASSPHFIGLQETRALMSWLDAEQPELAQELQRVMPLTRFS  540
            + +  S+ EL+L RM  A++A++P+FIGLQE++A++SWL++EQPELAQELQR +PL+RF+
Sbjct  474  EHAGVSSLELILERMSRAFQATGPQFIGLQESKAILSWLESEQPELAQELQRTLPLARFA  533

Query  541  GVLQKLVAERIPLRSVRAIGEALIEHGQHERDVNLLTEQVRITLKTHLCHQYGQPDGIHA  600
            +VLQ+L AE ++LRSVR+I+E+LIE+GQHERD+N LT++VRI+LK+++CHQ  + + +H+
Sbjct  534  AVLQRLSAELVSLRSVRPIAETLIEQGQHERDLNALTDHVRIALKAQICHQHCEENTLHT  593

Query  601  WLLTPELEEALRDSLRQTQNDIFFALSQQQIQLIHQEVKQAYAPGQDKQAVLLAAQDLRG  660
            WL+TPE E  LRDSLRQTQN+ +FAL  +  + + +++++A++     ++VLL AQDLR+
Sbjct  594  WLVTPETEVLLRDSLRQTQNESYFALEPELGNALVEQLREAFPLQASPRPVLLVAQDLRS  653

Query  661  PLRALIQERFHAVPVLSFAELEPALAVQVLGRLDVDPAF  699
            PLR+L+ ++FH VPVLSFAEL P++ VQVLGR+D++ ++
Sbjct  654  PLRSLLTDQFHHVPVLSFAELIPTVQVQVLGRIDLQETY  692

17) hrcV in NC_016830


> AY597281|10|G10|51103113|AAT96256.1|Pseudomonas_viridiflava_ME3.1b|+|9189..11279|hrcV|-|HrcV
Length=696

 Score =  714 bits (2702),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 463/689 (68%), Positives = 584/689 (85%), Gaps = 5/689 (0%)

Query  1    MIALLNKVANEAVRRIEVVGAFVVLGIVFMLILPLPTSVVDALIAiniciscllivlslY  60
            +I LLN++A   + R E+VGA +V++IVFM+ILPLPT +VD LIA+NICIS LLIVL++Y
Sbjct  4    IIHLLNRLALAVMGRTEIVGAVMVMAIVFMMILPLPTWLVDVLIALNICISSLLIVLAMY  63

Query  61   LPRPLAFSSFPAVlllttlfrlalSVATTRLILLQGDAGHIVQAFGNFVVGGNLAVGLVI  120
            LPRPLAFS+FPAVLLLTT+FRL+LS+ATTRLILLQ DAGHIV+AFG+FVVGGNLAVGLVI
Sbjct  64   LPRPLAFSTFPAVLLLTTMFRLSLSIATTRLILLQQDAGHIVEAFGSFVVGGNLAVGLVI  123

Query  121  FLILTVVNFLVITKGSERVAEVAARFTLDALPGKQMSIDSDLRANLIDVSEARRRREELN  180
            FLILT+VNFLVITKGSERVAEVAARFTLDA+PGKQMSIDSDLRANLI+V EAR+RRE+L+
Sbjct  124  FLILTIVNFLVITKGSERVAEVAARFTLDAMPGKQMSIDSDLRANLINVREARHRREQLS  183

Query  181  KESQLFGAMDGAMKFVKGDAIAGLVIVVINLIGGFSVGMMQHDMGASESMHLYAVLTIGD  240
            KESQLFGAMDGAMKFVKGDAIAGLVIV INLIGGFS+G++Q++M A+++MHLY+VLTIGD
Sbjct  184  KESQLFGAMDGAMKFVKGDAIAGLVIVFINLIGGFSIGVLQNGMEAGDAMHLYSVLTIGD  243

Query  241  GLIAQIPALLISLTAGMIITRVSPEGQPAGSSVGKEIAQQLTAEPKAWVIASVGMLGFAA  300
            GLIAQIPALLISLTAGMIITRV+P++Q A++++G EIA+QLT++PKAWV++S+GM+GF+ 
Sbjct  244  GLIAQIPALLISLTAGMIITRVAPDSQTADANIGHEIAEQLTSQPKAWVFSSIGMMGFGL  303

Query  301  LPGMPTLVFIVIALITGTAGIVQLYS-RARQARQGD-QPAEVVAPAQNGAEDLRSFDPTR  358
            +PGMPTLVF  IAL+   +G++QL   R ++ +Q+   +A   AP  NG ED+R F+P+R
Sbjct  304  IPGMPTLVFACIALLCLFSGLIQLWRIRQKELHQDSIGAASKGAPELNGREDIRRFNPSR  363

Query  359  AYLLQFSKAMEGNAAAEEAIQAIRKKRNALVAGFGLTLPPFEIEYSALLEDDEFRFCVHE  418
            AYLLQ   + +G A  +  IQ+IR++RN+LV  FGLTLP+F++E++  +E DEFRFCV E
Sbjct  364  AYLLQCHSSHQGTAELDRLIQGIRQRRNTLVHNFGLTLPSFDMEFADHFEPDEFRFCVYE  423

Query  419  VPMLRATFGE-RVAVARGPLPLEPRDGQVGSEVRDEQQWLWLTPDDPLLADERVEAVSAA  477
            VP +RATF + R+AV +    ++   G+ G   RDE +W+W+  DDPLL +E   +VS+ 
Sbjct  424  VPFIRATFTNARLAVDHR--EIDEDAGEPGRVERDETRWVWVDIDDPLLKEEEHAGVSSL  481

Query  478  ELLVERMSRAMFATGPQFLGLQESKSILSWLEAGQPELVQELQRTMPLARFAAVLQRLAG  537
            EL++ERMSRA  ATGPQF+GLQESK+ILSWLE+ QPEL QELQRT+PLARFAAVLQRL++
Sbjct  482  ELILERMSRAFQATGPQFIGLQESKAILSWLESEQPELAQELQRTLPLARFAAVLQRLSA  541

Query  538  EGVPLRAVRLIAESLIEHGQHERDVGALTDYARIALKSQIYHQYRDEDGLHVWLLTPETE  597
            E V+LR+VR IAE+LIE+GQHERD+ ALTD  RIALK+QI HQ  +E+ LH WL+TPETE
Sbjct  542  ELVSLRSVRPIAETLIEQGQHERDLNALTDHVRIALKAQICHQHCEENTLHTWLVTPETE  601

Query  598  GLLRDALRQTQTETFFALESLHTRALVMQLREGFPLRAKRVAVLLVAQdlraplrdllrd  657
             LLRD+LRQTQ E++FALE+    ALV QLRE+FPL+A   +VLLVAQDLR+PLR LL D
Sbjct  602  VLLRDSLRQTQNESYFALEPELGNALVEQLREAFPLQASPRPVLLVAQDLRSPLRSLLTD  661

Query  658  EFNHVPVLAFSELHSNAQVTVLGRFDLEQ  686
            +F+HVPVL+F+EL +  QV VLGR+DL++
Sbjct  662  QFHHVPVLSFAELIPTVQVQVLGRIDLQE  690

18) hrcV in NC_014500


> AY597281|10|G10|51103113|AAT96256.1|Pseudomonas_viridiflava_ME3.1b|+|9189..11279|hrcV|-|HrcV
Length=696

 Score =  708 bits (2678),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 476/694 (69%), Positives = 593/694 (86%), Gaps = 5/694 (0%)

Query  1    MAVLIAWLNRFAMSAMQRSEvvgavivmaivfmmiiPLPTGLIDVLIAFNICISSLLIVL  60
            M  +I  LNR+A++ M R+E+VGAV+VMAIVFMMI+PLPT L+DVLIA+NICISSLLIVL
Sbjct  1    MNGIIHLLNRLALAVMGRTEIVGAVMVMAIVFMMILPLPTWLVDVLIALNICISSLLIVL  60

Query  61   AMYLPKPLAFSTFPAVLLLTTMFRLALSISTTRQILLQQDAGHVVEAFGNFVVGGNLAVG  120
            AMYLP+PLAFSTFPAVLLLTTMFRL+LSI+TTR ILLQQDAGH+VEAFG+FVVGGNLAVG
Sbjct  61   AMYLPRPLAFSTFPAVLLLTTMFRLSLSIATTRLILLQQDAGHIVEAFGSFVVGGNLAVG  120

Query  121  LVIFMILTVVNFLVITKGSERVAEVAARFTLDAMPGKQMSIDSDLRAGLIDAQQARQRRE  180
            LVIF+ILT+VNFLVITKGSERVAEVAARFTLDAMPGKQMSIDSDLRA LI+ ++AR+RRE
Sbjct  121  LVIFLILTIVNFLVITKGSERVAEVAARFTLDAMPGKQMSIDSDLRANLINVREARHRRE  180

Query  181  NLAKESQLFGAMDGAMKFVKGDAIASLVIVFINMIGGFAIGVLQNGMAAGDAMHIYSVLT  240
            +L+KESQLFGAMDGAMKFVKGDAIA+LVIVFIN+IGGF+IGVLQNGM AGDAMH+YSVLT
Sbjct  181  QLSKESQLFGAMDGAMKFVKGDAIAGLVIVFINLIGGFSIGVLQNGMEAGDAMHLYSVLT  240

Query  241  IGDGLIAQIPALLISLTAGMIITRVSADGQKMDNNIGREIAEQLTSQPKAWIISSVGMLG  300
            IGDGLIAQIPALLISLTAGMIITRV++D+Q  D NIG+EIAEQLTSQPKAW++SS+GM+G
Sbjct  241  IGDGLIAQIPALLISLTAGMIITRVAPDSQTADANIGHEIAEQLTSQPKAWVFSSIGMMG  300

Query  301  FALLPGMPTlvfllislvslgsglfQLWRVKQSGLQDSLLADDGMPAEQ-NGYQDLRRFN  359
            F+L+PGMPTLVF  I+L+ L SGL+QLWR++Q  L++  ++  +  A + NG +D+RRFN
Sbjct  301  FGLIPGMPTLVFACIALLCLFSGLIQLWRIRQKELHQDSIGAASKGAPELNGREDIRRFN  360

Query  360  PTRAYLLQFHTVWQGAAAAAVLVQDIRRLRNRLVYHFGFTLPSFDIEFNPSVPEDEFRFC  419
            P+RAYLLQ H+  QG+A    L+Q+IR+ RN LV +FG+TLPSFD+EF      DEFRFC
Sbjct  361  PSRAYLLQCHSSHQGTAELDRLIQGIRQRRNTLVHNFGLTLPSFDMEFADHFEPDEFRFC  420

Query  420  VYEIPQLRASFGVPLLAVPRGQLPEAMQDDAMMPGLSARDEHHLLWLTPEHPLLQQPELS  479
            VYE+P +RA+F  + LAV + +    +++DA  PG   RDE + +W+  ++PLL++ E +
Sbjct  421  VYEVPFIRATFTNARLAVDHRE----IDEDAGEPGRVERDETRWVWVDIDDPLLKEEEHA  476

Query  480  PWSPDALILSRMENAIHRSGAQFIGLQETKSIlawleaeqpelaqelqRIMPLSRFASVL  539
              S+  LIL RM  A++ +G+QFIGLQE+K+IL+WLE+EQPELAQELQR +PL+RFA+VL
Sbjct  477  GVSSLELILERMSRAFQATGPQFIGLQESKAILSWLESEQPELAQELQRTLPLARFAAVL  536

Query  540  QRLASERVPLRSVRPIAEALIEIGQHERDINALTDYVRLELKAQICHQYSQDDSLTVWLL  599
            QRL++E V+LRSVRPIAE+LIE GQHERD+NALTD VR+ LKAQICHQ  ++++L  WL+
Sbjct  537  QRLSAELVSLRSVRPIAETLIEQGQHERDLNALTDHVRIALKAQICHQHCEENTLHTWLV  596

Query  600  TPETEELLRDALRQTQNETFFALTQEYAATLLGLLRRAFPPMTPPSALILVAQDLRSPLR  659
            TPETE LLRD+LRQTQNE++FAL  E + +L+  LR AFP  ++P +++LVAQDLRSPLR
Sbjct  597  TPETEVLLRDSLRQTQNESYFALEPELGNALVEQLREAFPLQASPRPVLLVAQDLRSPLR  656

Query  660  ILLQDEFHHVPVLSFTELESHLSINVAGRIDLLD  693
             LL D+FHHVPVLSF+EL + + ++V GRIDL +
Sbjct  657  SLLTDQFHHVPVLSFAELIPTVQVQVLGRIDLQE  690

19) Marme_1079 in NC_015276


> AY597281|10|G10|51103113|AAT96256.1|Pseudomonas_viridiflava_ME3.1b|+|9189..11279|hrcV|-|HrcV
Length=696

 Score =  708 bits (2678),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 450/701 (65%), Positives = 579/701 (83%), Gaps = 13/701 (1%)

Query  1    MNKLFILLNTFAITMMKRSEIVGAVFVLAIVFMMIIPMPTGLVDFlialnislssllial  60
            MN ++ LLN +A+++M R+EIVGAV V+AIVFMMI+P+PT LVD LIALNI +SSLLI L
Sbjct  1    MNGIIHLLNRLALAVMGRTEIVGAVMVMAIVFMMILPLPTWLVDVLIALNICISSLLIVL  60

Query  61   aMYLPSPLAFSSFPAVLLLTTMFRLALSISTTRLILLEQDAGDIVEAFGNFVVGGNLAVG  120
            AMYLP PLAFS+FPAVLLLTTMFRL+LSI+TTRLILL+QDAG+IVEAFG+FVVGGNLAVG
Sbjct  61   AMYLPRPLAFSTFPAVLLLTTMFRLSLSIATTRLILLQQDAGHIVEAFGSFVVGGNLAVG  120

Query  121  LVIFLILTVVNFLVITKGSERVAEVAARFTLDAMPGKQMSIDSDLRAGLLAPQEARFKRE  180
            LVIFLILT+VNFLVITKGSERVAEVAARFTLDAMPGKQMSIDSDLRA L+  +EAR +RE
Sbjct  121  LVIFLILTIVNFLVITKGSERVAEVAARFTLDAMPGKQMSIDSDLRANLINVREARHRRE  180

Query  181  QLGKESQLFGAMDGAMKFVKGDAIAGLIIVFINLIGGFSIGTLQHDMSASESMHLYSVLT  240
            QL+KESQLFGAMDGAMKFVKGDAIAGL+IVFINLIGGFSIG LQ++M A+++MHLYSVLT
Sbjct  181  QLSKESQLFGAMDGAMKFVKGDAIAGLVIVFINLIGGFSIGVLQNGMEAGDAMHLYSVLT  240

Query  241  IGDGLIAQIPALLISLTAGMIITRVAPDNQEIDANIGREMAQQISSQPKAWIIAACGLLG  300
            IGDGLIAQIPALLISLTAGMIITRVAPD+Q  DANIG+E+A+Q++SQPKAW++++ G++G
Sbjct  241  IGDGLIAQIPALLISLTAGMIITRVAPDSQTADANIGHEIAEQLTSQPKAWVFSSIGMMG  300

Query  301  FAILPGMPTVSFLSLAIVFLLCGGFQLYKAMKIRQFQQQ--ESDQTATPAENGDEDLRRF  358
            F+++PGMPT+ F  +A++ L+ G +QL + ++ ++++Q+   +   ++P  NG ED+RRF
Sbjct  301  FGLIPGMPTLVFACIALLCLFSGLIQLWR-IRQKELHQDSIGAASKGAPELNGREDIRRF  359

Query  359  NPSRPYLLLFNPIRSTPNDPFTVQLIREARRCRNRIVDTFGITLPSFDIDYDATLGEDEF  418
            NPSR+YLL  ++ +    +    +LI+  R+ RN +V+ FG+TLPSFD+++   +  DEF
Sbjct  360  NPSRAYLLQCHSSHQGTAE--LDRLIQGIRQRRNTLVHNFGLTLPSFDMEFADHFEPDEF  417

Query  419  CFCVYEVPYIRATYTPDLIALNASELTEEELGKEDFKDRRTGSPEREEERWLWIPSTSPL  478
             FCVYEVP+IRAT+T   +A++  E+ E+            G  ER+E RW+W+    PL
Sbjct  418  RFCVYEVPFIRATFTNARLAVDHREIDED--------AGEPGRVERDETRWVWVDIDDPL  469

Query  479  TQNESYTFTLPirlilerlerAFFATGPQFIGLQEAKTFVSWIEMEQPELAQELQRIVPT  538
             ++E  +   ++ LILER+ RAF ATGPQFIGLQE+K+++SW+E EQPELAQELQR +P 
Sbjct  470  LKEEEHAGVSSLELILERMSRAFQATGPQFIGLQESKAILSWLESEQPELAQELQRTLPL  529

Query  539  SRFASVLKRLAAESVPLRAIRPIAEALIEHGQYERDTGALTDFVRISLKAQICHQYTSDQ  598
            +RFA+VL+RL+AE V+LR++RPIAE+LIE+GQ ERD  ALTD VRI+LKAQICHQ   ++
Sbjct  530  ARFAAVLQRLSAELVSLRSVRPIAETLIEQGQHERDLNALTDHVRIALKAQICHQHCEEN  589

Query  599  GMHVWLLTPEAEETLRDSLRQTQTESFFALSREANQSLVEQLRDAFPILATPIPVLLVAQ  658
             +H WL+TPE+E  LRDSLRQTQ ES+FAL  E  ++LVEQLR+AFP+ A+P PVLLVAQ
Sbjct  590  TLHTWLVTPETEVLLRDSLRQTQNESYFALEPELGNALVEQLREAFPLQASPRPVLLVAQ  649

Query  659  DLRRILRNLLQDEFNHIPVLSFTELQSTSHVNVLGHISLDG  699
            DLR  LR+LL D+F+H+PVLSF+EL +T +V+VLG+I L+ 
Sbjct  650  DLRSPLRSLLTDQFHHVPVLSFAELIPTVQVQVLGRIDLQE  690

20) PSEBR_a5388 in NC_015379


> AY597281|10|G10|51103113|AAT96256.1|Pseudomonas_viridiflava_ME3.1b|+|9189..11279|hrcV|-|HrcV
Length=696

 Score =  704 bits (2662),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 460/689 (67%), Positives = 585/689 (85%), Gaps = 5/689 (0%)

Query  1    MIALLNKVANEAVRRIEVVGAFVVLGIVFMLILPLPTPVVDALIAINiciscllivisly  60
            +I LLN++A   + R E+VGA +V++IVFM+ILPLPT +VD LIA+NICIS LLIV+++Y
Sbjct  4    IIHLLNRLALAVMGRTEIVGAVMVMAIVFMMILPLPTWLVDVLIALNICISSLLIVLAMY  63

Query  61   lPRPLAFSSFPAVlllttlfrlalSVATTRLILLQGDAGHIVQAFGNFVVGGNLAVGLVI  120
            LPRPLAFS+FPAVLLLTT+FRL+LS+ATTRLILLQ DAGHIV+AFG+FVVGGNLAVGLVI
Sbjct  64   LPRPLAFSTFPAVLLLTTMFRLSLSIATTRLILLQQDAGHIVEAFGSFVVGGNLAVGLVI  123

Query  121  FLILTVVNFLVITKGSERVAEVAARFTLDALPGKQMSIDSDLRANLIDVTEARRRREELN  180
            FLILT+VNFLVITKGSERVAEVAARFTLDA+PGKQMSIDSDLRANLI+V EAR+RRE+L+
Sbjct  124  FLILTIVNFLVITKGSERVAEVAARFTLDAMPGKQMSIDSDLRANLINVREARHRREQLS  183

Query  181  KESQLFGAMDGAMKFVKGDAIAGLVIVVINLIGGFTVGMMQHDMGASESMHLYAVLTIGD  240
            KESQLFGAMDGAMKFVKGDAIAGLVIV INLIGGF++G++Q++M A+++MHLY+VLTIGD
Sbjct  184  KESQLFGAMDGAMKFVKGDAIAGLVIVFINLIGGFSIGVLQNGMEAGDAMHLYSVLTIGD  243

Query  241  GLIAQIPALLISLTAGMIITRVSPEGQPAGSSVGKEIAQQLTAEPKAWVIASVGMLGFAA  300
            GLIAQIPALLISLTAGMIITRV+P++Q A++++G EIA+QLT++PKAWV++S+GM+GF+ 
Sbjct  244  GLIAQIPALLISLTAGMIITRVAPDSQTADANIGHEIAEQLTSQPKAWVFSSIGMMGFGL  303

Query  301  LPGMPTLVFIVIALITGTAGIVQLYS-RARQVRQGK-QPAEVVAPAHNGAEDLRSFDPTR  358
            +PGMPTLVF  IAL+   +G++QL   R ++++Q+   +A   AP  NG ED+R F+P+R
Sbjct  304  IPGMPTLVFACIALLCLFSGLIQLWRIRQKELHQDSIGAASKGAPELNGREDIRRFNPSR  363

Query  359  AFLLQFSKAMEGNAAAEEVIQAIRKKRNALVAGFGLTLPPFEIEYSVLLEDDEFRFCVHE  418
            A+LLQ   + +G A  + +IQ+IR++RN+LV  FGLTLP+F++E++  +E DEFRFCV E
Sbjct  364  AYLLQCHSSHQGTAELDRLIQGIRQRRNTLVHNFGLTLPSFDMEFADHFEPDEFRFCVYE  423

Query  419  VPMLRATFGE-RIAVARGPLPFEPRDGLVGNEVRDEQQWLWLTPDDPLLADERVEAVPAA  477
            VP +RATF + R+AV +  +  +   G  G   RDE +W+W+  DDPLL +E   +V++ 
Sbjct  424  VPFIRATFTNARLAVDHREI--DEDAGEPGRVERDETRWVWVDIDDPLLKEEEHAGVSSL  481

Query  478  ELLVERMSRAMFATGPQFLGLQESKSILSWLEAGQPELVQELQRTMPLARFAAVLQRLAG  537
            EL++ERMSRA  ATGPQF+GLQESK+ILSWLE+ QPEL QELQRT+PLARFAAVLQRL++
Sbjct  482  ELILERMSRAFQATGPQFIGLQESKAILSWLESEQPELAQELQRTLPLARFAAVLQRLSA  541

Query  538  EGVPLRAVRLIAESLIEHGQHERDVGALTDYARIALKSQIYHQYRDENGLHVWLLTPETE  597
            E V+LR+VR IAE+LIE+GQHERD+ ALTD  RIALK+QI HQ  +EN LH WL+TPETE
Sbjct  542  ELVSLRSVRPIAETLIEQGQHERDLNALTDHVRIALKAQICHQHCEENTLHTWLVTPETE  601

Query  598  GLLRDALRQTQTETFFALESLHTRALVMQLREGFPLRAKRVAVLLVAQdlraplrdllrd  657
             LLRD+LRQTQ E++FALE+    ALV QLRE+FPL+A   +VLLVAQDLR+PLR LL D
Sbjct  602  VLLRDSLRQTQNESYFALEPELGNALVEQLREAFPLQASPRPVLLVAQDLRSPLRSLLTD  661

Query  658  EFNHVPVLAFSELHSNAQVTVLGRFDLEQ  686
            +F+HVPVL+F+EL +  QV VLGR+DL++
Sbjct  662  QFHHVPVLSFAELIPTVQVQVLGRIDLQE  690

21) rscV in NC_017911


> AY597281|10|G10|51103113|AAT96256.1|Pseudomonas_viridiflava_ME3.1b|+|9189..11279|hrcV|-|HrcV
Length=696

 Score =  688 bits (2603),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 433/686 (64%), Positives = 575/686 (84%), Gaps = 7/686 (1%)

Query  7    INGLLLKVAQRAEVLGavvvmaiififivPLPTWLVDILIALNICISCLLIVLALYLPGP  66
            +N L L V  R+E++GAV+VMAI+F+ I+PLPTWLVD+LIALNICIS LLIVLA+YLP P
Sbjct  8    LNRLALAVMGRTEIVGAVMVMAIVFMMILPLPTWLVDVLIALNICISSLLIVLAMYLPRP  67

Query  67   LAFSSFPSILLLTTMFRLALSIATTRLILLEQDAGDIVEAFGNFVVGGNLAVGMVIFLIL  126
            LAFS+FP++LLLTTMFRL+LSIATTRLILL+QDAG+IVEAFG+FVVGGNLAVG+VIFLIL
Sbjct  68   LAFSTFPAVLLLTTMFRLSLSIATTRLILLQQDAGHIVEAFGSFVVGGNLAVGLVIFLIL  127

Query  127  TLVNFLVITKGSERVAEVAARFSLDAMPGKQMSIDSDLRAGLIDGVQARDKRDQLSRESQ  186
            T+VNFLVITKGSERVAEVAARF+LDAMPGKQMSIDSDLRA LI+  +AR++R+QLS+ESQ
Sbjct  128  TIVNFLVITKGSERVAEVAARFTLDAMPGKQMSIDSDLRANLINVREARHRREQLSKESQ  187

Query  187  LFGAMDGAMKFVKGDAIAGLIIVVVNLLGGFSTGMFQHGLSAADSISLYSVLTIGDGLIA  246
            LFGAMDGAMKFVKGDAIAGL+IV +NL+GGFS G++Q+G+ A+D++ LYSVLTIGDGLIA
Sbjct  188  LFGAMDGAMKFVKGDAIAGLVIVFINLIGGFSIGVLQNGMEAGDAMHLYSVLTIGDGLIA  247

Query  247  QIPALLISLTAGMIITRVAPDGRKGVSNMGVEIARQMTSEPKSWVIASVGMLAFALVPGM  306
            QIPALLISLTAGMIITRVAPD++ + +N+G EIA Q+TS+PK+WV++S+GM++F+L+PGM
Sbjct  248  QIPALLISLTAGMIITRVAPDSQTADANIGHEIAEQLTSQPKAWVFSSIGMMGFGLIPGM  307

Query  307  PTLVF---ILIALITGCVGYYLVRQRQRQAEPANEAAEVVRPEENGKEDLRGFDPSRPYL  363
            PTLVF    L+ L++G +    +RQ++ + ++   A+    PE NG+ED+R F+PSR+YL
Sbjct  308  PTLVFACIALLCLFSGLIQLWRIRQKELHQDSIGAASKGA-PELNGREDIRRFNPSRAYL  366

Query  364  LQFSPVLRGTPEVTDLIHGIRQARNSLVANIGLTLPPFEVELDDSLAADEMRFCVHEVPM  423
            LQ  +  +GT+E+  LI+GIRQ RN+LV N+GLTLP+F++E+ D + +DE RFCV EVP 
Sbjct  367  LQCHSSHQGTAELDRLIQGIRQRRNTLVHNFGLTLPSFDMEFADHFEPDEFRFCVYEVPF  426

Query  424  VRASVVN-HVAVERKALTVEPEHAIPGLAERdeqdwlwlppddplledpeleRFTATHLI  482
            +RA+  N ++AV+++   ++ + + PG  ERDE  W+W+  DDPLL + E    ++ +LI
Sbjct  427  IRATFTNARLAVDHRE--IDEDAGEPGRVERDETRWVWVDIDDPLLKEEEHAGVSSLELI  484

Query  483  LERMRQAMMLSGPQFLGIQESKSILSWLEHNQPELVQELQRIMPLSRFSAVLQRLASEGV  542
            LERM +A   +GPQF+G+QESK+ILSWLE +QPEL QELQR +PL+RF+AVLQRL++E V
Sbjct  485  LERMSRAFQATGPQFIGLQESKAILSWLESEQPELAQELQRTLPLARFAAVLQRLSAELV  544

Query  543  PLRAVRLIVESLIEYGQHEREPEALADYARIALKAQIYHQYSEADGLHAWLLSPQSENIL  602
            +LR+VR I E+LIE GQHER+ +AL+D  RIALKAQI HQ  E + LH+WL++P++E +L
Sbjct  545  SLRSVRPIAETLIEQGQHERDLNALTDHVRIALKAQICHQHCEENTLHTWLVTPETEVLL  604

Query  603  REALRQTQTGVFFALDENHSAAFISLLNQAFVLRAKSKSVMLVAQDLRSPLRTLLLEEFN  662
            R++LRQTQ   +FAL+ + + A++  L +AF L+A +++V+LVAQDLRSPLR+LL ++F+
Sbjct  605  RDSLRQTQNESYFALEPELGNALVEQLREAFPLQASPRPVLLVAQDLRSPLRSLLTDQFH  664

Query  663  HVPVLSFAELGSTSKVKVLGRIDLGQ  688
            HVPVLSFAEL +T +V+VLGRIDL +
Sbjct  665  HVPVLSFAELIPTVQVQVLGRIDLQE  690

22) Pmen_0039 in NC_009439


> AY597281|10|G10|51103113|AAT96256.1|Pseudomonas_viridiflava_ME3.1b|+|9189..11279|hrcV|-|HrcV
Length=696

 Score =  676 bits (2555),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 451/694 (65%), Positives = 587/694 (85%), Gaps = 6/694 (0%)

Query  1    MGAVIDFLNGIALAAMRRSEivgafvviaiifMMITPMPTELMDVLIAINICISCLMIML  60
            M ++I++LN +ALA M R+EIVGA +V+AI+FMMI P+PT L+DVLIA+NICIS L+I+L
Sbjct  1    MNGIIHLLNRLALAVMGRTEIVGAVMVMAIVFMMILPLPTWLVDVLIALNICISSLLIVL  60

Query  61   AMHLPRPLAFSTFPAVLLLTTMFRLALSISTTRLILLEQDAGHIVEAFGEFVVGGNLAVG  120
            AM LPRPLAFSTFPAVLLLTTMFRL+LSI+TTRLILL+QDAGHIVEAFG FVVGGNLAVG
Sbjct  61   AMYLPRPLAFSTFPAVLLLTTMFRLSLSIATTRLILLQQDAGHIVEAFGSFVVGGNLAVG  120

Query  121  VVIFLILTIVNFLVITKGSERVAEVGARFTLDAMPGKQMSIDSDLRANLISVSEARNRRA  180
            +VIFLILTIVNFLVITKGSERVAEV+ARFTLDAMPGKQMSIDSDLRANLI+V EAR+RR 
Sbjct  121  LVIFLILTIVNFLVITKGSERVAEVAARFTLDAMPGKQMSIDSDLRANLINVREARHRRE  180

Query  181  ELNKESQLFGAMDGAMKFVNgdaiasliiiainmiggmaigVAQMGMSAGDALQVYTILT  240
            +L+KESQLFGAMDGAMKFV+GDAIA+L+I+ IN+IGG +IGV Q GM AGDA+++Y++LT
Sbjct  181  QLSKESQLFGAMDGAMKFVKGDAIAGLVIVFINLIGGFSIGVLQNGMEAGDAMHLYSVLT  240

Query  241  IGDGLVSQIPALMISVTAGIVITRV-PNEQRQQTNIGREIAEQLTSQPKAWIIASVAMLG  299
            IGDGL++QIPAL+IS+TAG++ITRV P+ Q  ++NIG+EIAEQLTSQPKAW+++S++M+G
Sbjct  241  IGDGLIAQIPALLISLTAGMIITRVAPDSQTADANIGHEIAEQLTSQPKAWVFSSIGMMG  300

Query  300  FAALPGMPTLTFiiiaiicgcggllqlqrarTSSAAEDDPEVI---PPEMNGQEDLRTFS  356
            F+ +PGMPTL F  IA++C  +GL+QL R R     +D        +PE+NG+ED+R F+
Sbjct  301  FGLIPGMPTLVFACIALLCLFSGLIQLWRIRQKELHQDSIGAASKGAPELNGREDIRRFN  360

Query  357  PSRQFVLQFHPSQDAH-QVAALLSEIRQRRNRLVVQYGLTLPSFIIEQSPLLPPDEFRFS  415
            PSR ++LQ H+S+++  ++  L+  IRQRRN LV ++GLTLPSF +E +  + PDEFRF 
Sbjct  361  PSRAYLLQCHSSHQGTAELDRLIQGIRQRRNTLVHNFGLTLPSFDMEFADHFEPDEFRFC  420

Query  416  VYEVPLFKATLTQSQLAVPARSLPPGAV-CGSNERQEEDWVWMPADDPMLQNDELEIVSA  474
            VYEVP+++AT+T+++LAV  R +  +A   G  ER+E  WVW+  DDP+L+++E   VS+
Sbjct  421  VYEVPFIRATFTNARLAVDHREIDEDAGEPGRVERDETRWVWVDIDDPLLKEEEHAGVSS  480

Query  475  ATLIVERMERAMQACGPQFIGLQETKAILGWLESEQPELAQEMQRVLPLARFSAILQRLA  534
              LI+ERM RA QA GPQFIGLQE+KAIL+WLESEQPELAQE+QR LPLARF+A+LQRL+
Sbjct  481  LELILERMSRAFQATGPQFIGLQESKAILSWLESEQPELAQELQRTLPLARFAAVLQRLS  540

Query  535  AECVPLRSVRLIAETLIEHAQHERDVTVLTDYVRIALKSQIYHQYSSAEGLLVWLLTPES  594
            AE V+LRSVR IAETLIE++QHERD+  LTD VRIALK+QI HQ    + L  WL+TPE+
Sbjct  541  AELVSLRSVRPIAETLIEQGQHERDLNALTDHVRIALKAQICHQHCEENTLHTWLVTPET  600

Query  595  EGILRDGLRQTQTETFFALNHETSQLLLQQLHMAFPMRAPEQAVLLVPQDLRSPLRTLLQ  654
            E +LRD+LRQTQ E++FAL+ E ++ L++QL+ AFP++A+ ++VLLV+QDLRSPLR+LL 
Sbjct  601  EVLLRDSLRQTQNESYFALEPELGNALVEQLREAFPLQASPRPVLLVAQDLRSPLRSLLT  660

Query  655  EEFHHVPVLSFAEISSAARIKVMGRFDLEESVAL  688
            ++FHHVPVLSFAE+ ++ +++V+GR+DL+E+  L
Sbjct  661  DQFHHVPVLSFAELIPTVQVQVLGRIDLQETYDL  694

23) H045_00160 in NC_020209


> AY597281|10|G10|51103113|AAT96256.1|Pseudomonas_viridiflava_ME3.1b|+|9189..11279|hrcV|-|HrcV
Length=696

 Score =  673 bits (2546),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 414/661 (63%), Positives = 552/661 (84%), Gaps = 6/661 (0%)

Query  36   PLPTWLVDILIAINICISCLLIVLALYLPGPLAFSSFPSILLLTTMFRLALSIATTRLIL  95
            PLPTWLVD+LIA+NICIS LLIVLA+YLP PLAFS+FP++LLLTTMFRL+LSIATTRLIL
Sbjct  37   PLPTWLVDVLIALNICISSLLIVLAMYLPRPLAFSTFPAVLLLTTMFRLSLSIATTRLIL  96

Query  96   LEQDAGDIVEAFGNFVVGGNLAVGMVIFLILTLVNFLVITKGSERVAEVAARFSLDAMPG  155
            L+QDAG+IVEAFG+FVVGGNLAVG+VIFLILT+VNFLVITKGSERVAEVAARF+LDAMPG
Sbjct  97   LQQDAGHIVEAFGSFVVGGNLAVGLVIFLILTIVNFLVITKGSERVAEVAARFTLDAMPG  156

Query  156  KQMSIDSDLRAGLIDGLQAREKREQLSRESQLFGAMDGAMKFVKGDAIAGLIIVVVNLLG  215
            KQMSIDSDLRA LI+  +AR++REQLS+ESQLFGAMDGAMKFVKGDAIAGL+IV +NL+G
Sbjct  157  KQMSIDSDLRANLINVREARHRREQLSKESQLFGAMDGAMKFVKGDAIAGLVIVFINLIG  216

Query  216  GFTTGMFQHGLSAAESIQLYSVLTIGDGLIAQIPALLISLTAGMIITRVAPDGRKGVSNM  275
            GF+ G++Q+G+ A+++++LYSVLTIGDGLIAQIPALLISLTAGMIITRVAPD++ + +N+
Sbjct  217  GFSIGVLQNGMEAGDAMHLYSVLTIGDGLIAQIPALLISLTAGMIITRVAPDSQTADANI  276

Query  276  GAEIARQMTSEPKSWMIASVGMLAFAVVPGMPTLVFILISAATGFLGYYLMrqrqreekp  335
            G EIA Q+TS+PK+W+++S+GM++F+++PGMPTLVF  I+    F G   +++ ++ E  
Sbjct  277  GHEIAEQLTSQPKAWVFSSIGMMGFGLIPGMPTLVFACIALLCLFSGLIQLWRIRQKELH  336

Query  336  keeAANVVR--PEENGNEDLRGFDPSRPYLLQFPPSLRGTPEVTDLIHGIRQARNSLVAN  393
            ++  +   +  PE NG ED+R F+PSR+YLLQ  +S +GT+E+  LI+GIRQ RN+LV N
Sbjct  337  QDSIGAASKGAPELNGREDIRRFNPSRAYLLQCHSSHQGTAELDRLIQGIRQRRNTLVHN  396

Query  394  IGLTLPPFEVELDDALAADEMRFCVHEVPMVKASVVTL-VAVDRKALAVEPEHAVPGLAE  452
            +GLTLP+F++E+ D + +DE RFCV EVP ++A+     +AVD++   ++ + + PG  E
Sbjct  397  FGLTLPSFDMEFADHFEPDEFRFCVYEVPFIRATFTNARLAVDHR--EIDEDAGEPGRVE  454

Query  453  RDEQdwlwlppddplladpalERFTATSLIIERMRQAMMLSGPQFLGIQESKAILSWLEH  512
            RDE  W+W+  DDPLL +      ++  LI+ERM +A   +GPQF+G+QESKAILSWLE 
Sbjct  455  RDETRWVWVDIDDPLLKEEEHAGVSSLELILERMSRAFQATGPQFIGLQESKAILSWLES  514

Query  513  NQSELVQELQRIMPLSRFSAVLQRLASEGVPLRAVRLIVESLIEHGQHEREPDALADYAR  572
            +Q+EL QELQR +PL+RF+AVLQRL++E V+LR+VR I E+LIE+GQHER+ +AL+D  R
Sbjct  515  EQPELAQELQRTLPLARFAAVLQRLSAELVSLRSVRPIAETLIEQGQHERDLNALTDHVR  574

Query  573  IALKAQIFQQYSEDDGLHAWLLSPHTENILREALRQTQTGVFFALDNESSAALVNLLNQA  632
            IALKAQI +Q  E++ LH+WL++P+TE +LR++LRQTQ   +FAL+ E + ALV+ L +A
Sbjct  575  IALKAQICHQHCEENTLHTWLVTPETEVLLRDSLRQTQNESYFALEPELGNALVEQLREA  634

Query  633  FTLRARSKSVMLVAQDLRSPLRALLLEEFNHVPVLSFAELASTSKVKVLGRFDLGQD-EL  691
            F L+A +++V+LVAQDLRSPLR+LL ++F+HVPVLSFAEL +T +V+VLGR+DL +  +L
Sbjct  635  FPLQASPRPVLLVAQDLRSPLRSLLTDQFHHVPVLSFAELIPTVQVQVLGRIDLQETYDL  694

Query  692  M  692
            M
Sbjct  695  M  695

24) H650_14870 in NC_021500


> AY597281|10|G10|51103113|AAT96256.1|Pseudomonas_viridiflava_ME3.1b|+|9189..11279|hrcV|-|HrcV
Length=696

 Score =  596 bits (2252),  Expect = 1e-171, Method: Compositional matrix adjust.
 Identities = 386/679 (57%), Positives = 537/679 (80%), Gaps = 6/679 (0%)

Query  1    MVNQTELIGAVIVMTIVFMMVLPLPVFIIDTALSLNICIATLLAIQALFMQHPLAFSTFP  60
            ++ +TE++GAV+VM+IVFMM+LPLP  ++D  ++LNICI++LL + A+++ +PLAFSTFP
Sbjct  15   VMGRTEIVGAVMVMAIVFMMILPLPTWLVDVLIALNICISSLLIVLAMYLPRPLAFSTFP  74

Query  61   AVLLLTTMFRLALSVATTRMILLQHDAGHVVETFGNFVAGGNLAVGLVIFLILTLVNFLV  120
            AVLLLTTMFRL+LS+ATTR+ILLQ+DAGH+VE+FG+FV GGNLAVGLVIFLILT+VNFLV
Sbjct  75   AVLLLTTMFRLSLSIATTRLILLQQDAGHIVEAFGSFVVGGNLAVGLVIFLILTIVNFLV  134

Query  121  ITKGAERVAEVSARFNLDAMPGKQMAIDSDLRSGLIDTADARVRREQLTKESQLFGAMDG  180
            ITKG+ERVAEV+ARF LDAMPGKQM+IDSDLR+ LI+  +AR RREQL+KESQLFGAMDG
Sbjct  135  ITKGSERVAEVAARFTLDAMPGKQMSIDSDLRANLINVREARHRREQLSKESQLFGAMDG  194

Query  181  AMKFVKGDAISGIIIVFINLIGGFSVGILQHGMPAADAMHIYSILSIGDGLVAQipalli  240
            AMKFVKGDAI+G++IVFINLIGGFS+G+LQ+GM A+DAMH+YS+L+IGDGL+AQIPALLI
Sbjct  195  AMKFVKGDAIAGLVIVFINLIGGFSIGVLQNGMEAGDAMHLYSVLTIGDGLIAQIPALLI  254

Query  241  slaagiiiTRVNSDNAASSLNIGGEIIWQLTRHPKAWIYCGIIMALFAVVPGMPAMlftt  300
            SL+AG+IITRV +D+ ++  NIG EI  QLT +PKAW++ +I M  F+++PGMP+++F+ 
Sbjct  255  SLTAGMIITRVAPDSQTADANIGHEIAEQLTSQPKAWVFSSIGMMGFGLIPGMPTLVFAC  314

Query  301  lsllcltlaflltRQEKPRLEMAGQPTPSIVGAEPDNSTELMGYENVRRFFPLRAYllqf  360
            ++LLCL  +++  ++ + +     +     +GA +  + EL G E++RRF P RAYLLQ 
Sbjct  315  IALLCLFSGLIQLWRIRQK-----ELHQDSIGAASKGAPELNGREDIRRFNPSRAYLLQC  369

Query  361  hpqhqqqpgfeqllqRIYALRNDTVFEYGLTLPSFELEGNAQLAPDEFRFCVYEVPVIRA  420
            H+ HQ  + +++L+Q I   RN  V ++GLTLPSF++E   ++ PDEFRFCVYEVP IRA
Sbjct  370  HSSHQGTAELDRLIQGIRQRRNTLVHNFGLTLPSFDMEFADHFEPDEFRFCVYEVPFIRA  429

Query  421  TYDPDKCAVTARLVAEDDGTSGLEEREEQGLRWFDVDDHRLSQYETEKRTSGDLILARMR  480
            T+   + AV  R + ED G +G  ER+E    W D+DD  L + E    +S +LIL RM 
Sbjct  430  TFTNARLAVDHREIDEDAGEPGRVERDETRWVWVDIDDPLLKEEEHAGVSSLELILERMS  489

Query  481  RAILSTGWKFVGLQESKALIDWLRSEQPELADELERCLPIAWFSAVLQRLAAERVTLRPL  540
            RA+ +TG +F+GLQESKA++ WL SEQPELA+EL+R LP+A+F+AVLQRL+AE V+LR++
Sbjct  490  RAFQATGPQFIGLQESKAILSWLESEQPELAQELQRTLPLARFAAVLQRLSAELVSLRSV  549

Query  541  RLIAETLIKHSRHESNLMVLTELVRHALREQICYQYSQHETLNSWLLAPATEAVFRQALN  600
            R IAETLI +++HE +L  LT+ VR AL+ QIC Q  +++TL++WL++P TE ++R++L 
Sbjct  550  RPIAETLIEQGQHERDLNALTDHVRIALKAQICHQHCEENTLHTWLVTPETEVLLRDSLR  609

Query  601  AEGAQS-MTLSSVMHEALLARLAQCFPTDEGTPSVLLVEPELRGPLSGLLRESSTLVPVL  659
                +S  +L + + +AL+ +L + FP + +  +VLLV  +LR+PL +LL +    VPVL
Sbjct  610  QTQNESYFALEPELGNALVEQLREAFPLQASPRPVLLVAQDLRSPLRSLLTDQFHHVPVL  669

Query  660  AFSELIPSIKVQIQGRIDL  678
            +F+ELIP+++VQ+ GRIDL
Sbjct  670  SFAELIPTVQVQVLGRIDL  688

25) HCH_05101 in NC_007645


> AY597281|10|G10|51103113|AAT96256.1|Pseudomonas_viridiflava_ME3.1b|+|9189..11279|hrcV|-|HrcV
Length=696

 Score =  399 bits (1500),  Expect = 3e-112, Method: Compositional matrix adjust.
 Identities = 297/685 (44%), Positives = 485/685 (71%), Gaps = 26/685 (3%)

Query  14   RNDVVLAIFLVGIIFMMILPMPTMLVDVMIAINMGVSVILLMLALYIKSPLDFSVFPSML  73
            R ++V A+ +++I+FMMILP+PT LVDV+IA+N+ +S +L++LA+Y+  PL FS FP++L
Sbjct  18   RTEIVGAVMVMAIVFMMILPLPTWLVDVLIALNICISSLLIVLAMYLPRPLAFSTFPAVL  77

Query  74   LITTMFRLALSITTTRLILLQADAGQIVYtfgnfvvggnlvvggvifliltivQFLVITK  133
            L+TTMFRL+LSI+TTRLILLQ DAG+IV +FG+FVVGGNL VG VIFLILTIV+FLVITK
Sbjct  78   LLTTMFRLSLSIATTRLILLQQDAGHIVEAFGSFVVGGNLAVGLVIFLILTIVNFLVITK  137

Query  134  GSERVAEVSARFSLDSMPGKQMSIDGDMRAGVIDMEEARVRRAKVEKESQLYGSMDGAMK  193
            GSERVAEV+ARF+LD+MPGKQMSID+D+RA +I++ EAR RR ++ KESQL+G+MDGAMK
Sbjct  138  GSERVAEVAARFTLDAMPGKQMSIDSDLRANLINVREARHRREQLSKESQLFGAMDGAMK  197

Query  194  FVKGDAIAGLIITAVNILGGILVGVTQNGLSAGDAAAIYSVLTIGDGLVAQIPALFISIT  253
            FVKGDAIAGL+I  +N++GG+ +GV QNG+ AGDA  +YSVLTIGDGL+AQIPAL+IS+T
Sbjct  198  FVKGDAIAGLVIVFINLIGGFSIGVLQNGMEAGDAMHLYSVLTIGDGLIAQIPALLISLT  257

Query  254  AGFIVTRVSTD---ESENLGRDIGGQIGAQPKalfiggalllgfaMIPGFPTMVFLVLAG  310
            AG I+TRV+ D      N+G++I+ Q+ +QPKA  +++  ++GF++IPG PT+VF  +A 
Sbjct  258  AGMIITRVAPDSQTADANIGHEIAEQLTSQPKAWVFSSIGMMGFGLIPGMPTLVFACIA-  316

Query  311  LICSI-GFIMSRKARHADTDDDDIPAMAAAGQTRTPSKTPEKDD---FSPTVPLLLDVAA  366
            L+C + G+I  ++ R+ + ++D I     ++ ++ ++    ++D   F+P+ + LL+  +
Sbjct  317  LLCLFSGLIQLWRIRQKELHQDSI-----GAASKGAPELNGREDIRRFNPSRAYLLQCHS  371

Query  367  SCQQMLKPSELNAELYRVRRALYLDLGVPFPGIHLRFNESMKDGEYTILMHEVPVAQGRL  426
            S Q       L   + + R +L  ++G+ +P++++ F +    +E+ + + EVP  ++ +
Sbjct  372  SHQGTAELDRLIQGIRQRRNTLVHNFGLTLPSFDMEFADHFEPDEFRFCVYEVPFIRATF  431

Query  427  PADKVVVLQDQEQLDILGIPHQQGELAMSANPY-WVEKSHA--PAMENAGIEYLDAPRLL  483
               ++ V    ++ +I   + + G +        WV+  ++     E+AG+  L+   L+
Sbjct  432  TNARLAV----DHREIDEDAGEPGRVERDETRWVWVDIDDPLLKEEEHAGVSSLE---LI  484

Query  484  IYHLSFILKRYASEFIGLQECRYLLDQMEGQYGDLVKEVQRVVPIQRIAEILQRLVSEDI  543
            + ++S  ++  +++FIGLQE + +L  +E++  +L +E+QR +P+ R+A +LQRL +E +
Sbjct  485  LERMSRAFQATGPQFIGLQESKAILSWLESEQPELAQELQRTLPLARFAAVLQRLSAELV  544

Query  544  SIRNLRAIMEALVEWGQKEKDTVLLTEYVRKSLSRYISYKFCNGQNVLPAYMLDQDLEES  603
            S+R++R+I E+L+E GQ E+D   LT+ VR +L   I  + C+ +N L + ++  + E  
Sbjct  545  SLRSVRPIAETLIEQGQHERDLNALTDHVRIALKAQICHQHCE-ENTLHTWLVTPETEVL  603

Query  604  IRGGIRQTSSGAYLALDPDTTQNFINELHREVGDLDALQHKPVLLVSMDIRRYVRKMIER  663
            +R+++RQT + +Y+AL+P+  + ++++L RE   L+A   +PVLLV+ D+R  +R ++  
Sbjct  604  LRDSLRQTQNESYFALEPELGNALVEQL-REAFPLQA-SPRPVLLVAQDLRSPLRSLLTD  661

Query  664  DFFELCVLSYQELTQDITVQPISRI  688
            +F ++ VLS+ EL   + VQ ++RI
Sbjct  662  QFHHVPVLSFAELIPTVQVQVLGRI  686

26) hrcV in NC_014323


> AY597281|10|G10|51103113|AAT96256.1|Pseudomonas_viridiflava_ME3.1b|+|9189..11279|hrcV|-|HrcV
Length=696

 Score =  388 bits (1459),  Expect = 5e-109, Method: Compositional matrix adjust.
 Identities = 313/703 (45%), Positives = 505/703 (72%), Gaps = 29/703 (4%)

Query  5    GIVMLLNKFAIQLGKRAELLAAALVIGIVFMLVLPMPIWLLDILIAMSLCASGLIVVVAM  64
            GI+ LLN++A+ +  R+E+++A +V++IVFM++LP+P WL+D+LIA+++C S+L++V+AM
Sbjct  3    GIIHLLNRLALAVMGRTEIVGAVMVMAIVFMMILPLPTWLVDVLIALNICISSLLIVLAM  62

Query  65   YMAGPTAFSTFPAVLLLTTLFRLAISVSTTRLILLEADAGHIVEtfgnfvvggnlvvglv  124
            Y++ P AFSTFPAVLLLTT+FRL++S++TTRLILL+ DAGHIVE+FG+FVVGGNL VGLV
Sbjct  63   YLPRPLAFSTFPAVLLLTTMFRLSLSIATTRLILLQQDAGHIVEAFGSFVVGGNLAVGLV  122

Query  125  ifliltvvQFIVITKGSERVSEVSARFSLDAMPGKQMSIDSDLRAGILTPEEAKAKRAHL  184
            IFLILT+V+F+VITKGSERV+EV+ARF+LDAMPGKQMSIDSDLRA ++   EA+ +R +L
Sbjct  123  IFLILTIVNFLVITKGSERVAEVAARFTLDAMPGKQMSIDSDLRANLINVREARHRREQL  182

Query  185  GQESQLHGAMDGAMKFVKGDAIAGICIVAINLiggisigiiQRGMDAGQAMQVYSILSIG  244
            ++ESQL GAMDGAMKFVKGDAIAG+ IV INLIGG+SIG++Q GM+AG+AM++YS+L+IG
Sbjct  183  SKESQLFGAMDGAMKFVKGDAIAGLVIVFINLIGGFSIGVLQNGMEAGDAMHLYSVLTIG  242

Query  245  DALIAQIPALLISLGAGIITTRVSDDNEEGETNIGRDIVGELFGEPKALLTAAGIMLLFG  304
            D+LIAQIPALLISL AG+I TRV+ D++ +++NIG++I  +L ++PKA + ++  M+ FG
Sbjct  243  DGLIAQIPALLISLTAGMIITRVAPDSQTADANIGHEIAEQLTSQPKAWVFSSIGMMGFG  302

Query  305  LIPGMPTVIFvalavglcvagvvgmlKPLADAEMARESEELERKNA----GIVDLTSFAA  360
            LIPGMPT++F  +A+    +G++ + + + + E+ ++S     K A    G  D+  F +
Sbjct  303  LIPGMPTLVFACIALLCLFSGLIQLWR-IRQKELHQDSIGAASKGAPELNGREDIRRFNP  361

Query  361  TTPFILRMNESMRGKAEAEVIRTAVRIMRNAMLERRGIPDLKPIDFEFSSMVPEGRVFFM  420
            + +++L+ + S +G AE + +  ++R  RN++++  G+  L ++D EF+     +   F 
Sbjct  362  SRAYLLQCHSSHQGTAELDRLIQGIRQRRNTLVHNFGLT-LPSFDMEFADHFEPDEFRFC  420

Query  421  MSEVPLVDAEIMLGWSATRESLERVQELGFQGFERN-IPGSRRRRVWVKTEDPEKLAEAG  479
            + EVP++ A +    + +R ++++ +E++ ++ E   +     R+VWV  +DP       
Sbjct  421  VYEVPFIRATF----TNARLAVDH-REIDEDAGEPGRVERDETRWVWVDIDDP-------  468

Query  480  LLAESWEKVFASDIEVEMLRNCQ-------MFVGVNEVIRFTRWAERRYPELGKEVVKTV  532
            LL E  E    S +E+ + R  +        F+G++E   +  W E   PEL++E+ +T+
Sbjct  469  LLKEE-EHAGVSSLELILERMSRAFQATGPQFIGLQESKAILSWLESEQPELAQELQRTL  527

Query  533  TLPRLTEVVQRLTREGVSLRNARLLLETTLDWAPKERDPDVIADYVRLAFKRQLCFEASR  592
             L+R++ V+QRL+ E VSLR+ R + ET ++ +  ERD + ++D VR+A+K Q+C +   
Sbjct  528  PLARFAAVLQRLSAELVSLRSVRPIAETLIEQGQHERDLNALTDHVRIALKAQICHQHCE  587

Query  593  EGLIEVILLSPELEDQLRNAMRQTSQGSYLDIDSELEQMILDRLNELSTNVSTPIVPPVL  652
            E  ++  L++PE E  LR+++RQT + SY+ +++EL + ++++L E     ++P   PVL
Sbjct  588  ENTLHTWLVTPETEVLLRDSLRQTQNESYFALEPELGNALVEQLREAFPLQASP--RPVL  645

Query  653  VTAADIRRSVRKLIeeeffpvpvfAFSELTQHAKVKPVGMIEV  695
            + A D+R ++R L+ ++F  VPV++F+EL    +V+ +G I++
Sbjct  646  LVAQDLRSPLRSLLTDQFHHVPVLSFAELIPTVQVQVLGRIDL  688

27) NH44784_014751 in NC_021285


> AY597281|10|G10|51103113|AAT96256.1|Pseudomonas_viridiflava_ME3.1b|+|9189..11279|hrcV|-|HrcV
Length=696

 Score =  369 bits (1387),  Expect = 2e-103, Method: Compositional matrix adjust.
 Identities = 308/705 (44%), Positives = 505/705 (72%), Gaps = 29/705 (4%)

Query  1    MQALNRVVAAATSRNDIVLAVLIVSIIFMMILPLPTTLVDVLIGANMTLSAILLMVAMYl  60
            ++ LNR+  A  +R +IV AV++++I+FMMILPLPT LVDVLI+ N+ +S++L+++AMYL
Sbjct  5    IHLLNRLALAVMGRTEIVGAVMVMAIVFMMILPLPTWLVDVLIALNICISSLLIVLAMYL  64

Query  61   psplafssfpsvllvTTLFRLGISIATTRLILLQGDAGHIIETfgnfvvggnlivglvvf  120
            P PLAFS+FP+VLL+TT+FRL++SIATTRLILLQ DAGHI+E+FG+FVVGGNL VGLV+F
Sbjct  65   PRPLAFSTFPAVLLLTTMFRLSLSIATTRLILLQQDAGHIVEAFGSFVVGGNLAVGLVIF  124

Query  121  lilTIVQFVVITKGAERVAEVAARFSLDAMPGKQMSIDADLRAGTIDMDEARKRRSVVEK  180
            LILTIV+F+VITKG+ERVAEVAARF+LDAMPGKQMSID+DLRA  I++ EAR RR  + K
Sbjct  125  LILTIVNFLVITKGSERVAEVAARFTLDAMPGKQMSIDSDLRANLINVREARHRREQLSK  184

Query  181  ESQLYGAMDGAMKFVKGDAIAGLIIVAVNLLGGILIGTMQRGLSAGEAVQVYSILTIGDG  240
            ESQL+GAMDGAMKFVKGDAIAGL+IV +NL+GG+ IG +Q G+ AG+A+++YS+LTIGDG
Sbjct  185  ESQLFGAMDGAMKFVKGDAIAGLVIVFINLIGGFSIGVLQNGMEAGDAMHLYSVLTIGDG  244

Query  241  LIAQIPALFIAICAGIIVTRV--QTGDGPSNVGKDIGAQVLAQPRalliaaaiaigmgli  298
            LIAQIPAL+I++ AG+I+TRV  ++  + +N+G +I+ Q+ +QP+A ++++   +G GLI
Sbjct  245  LIAQIPALLISLTAGMIITRVAPDSQTADANIGHEIAEQLTSQPKAWVFSSIGMMGFGLI  304

Query  299  pgmpTLTFLALAAVVGTIGFVLLRGTRKVVDEKTGEITEIPALAADGQKPQARPRADGSA  358
            PGMPTL F  +A +    G++ L+  R    +K  +   I A + ++   ++R   ++  
Sbjct  305  PGMPTLVFACIALLCLFSGLIQLWRIR----QKELHQDSIGAASKGAPELNGR---EDIR  357

Query  359  EFAPTLPLMIDVAAALQRSFDADELNEELLKIRRALYFDLGVPFPGIQLRFNDALPADSY  418
             F P+ + +++  ++ Q + + D L + + + R +L  ++G+ +P++++ F D + +D +
Sbjct  358  RFNPSRAYLLQCHSSHQGTAELDRLIQGIRQRRNTLVHNFGLTLPSFDMEFADHFEPDEF  417

Query  419  NILLSEVPVSQGKLRPGAVLV--RDTEQNL-QALQVPYETDKRFLPNVPTLWVDAGLAPT  475
             + + EVP  ++ +  + + V  R+ +++  ++ +V  +  ++       +WVD +  P 
Sbjct  418  RFCVYEVPFIRATFTNARLAVDHREIDEDAGEPGRVERDETRW-------VWVDID-DPL  469

Query  476  LTA---AGIPFLDPHQVLTWHLAFVLKKYSSDFIGIQETRFLLTAMEDRFPDLVKEALRV  532
            L     AG++ L+   +L  +++  ++  +++FIG+QE++ +L+ +E   P+L +E  R 
Sbjct  470  LKEEEHAGVSSLE--LILE-RMSRAFQATGPQFIGLQESKAILSWLESEQPELAQELQRT  526

Query  533  MPVQKIAEILQRLVSEDISVRNLRAVLEALIEWGQKEKDSVLLTEYVRVSLKRHISYKYS  592
            +P+ ++A +LQRL +E +S+R++R++ E+LIE GQ E+D   LT+ VR++LK +I  +  
Sbjct  527  LPLARFAAVLQRLSAELVSLRSVRPIAETLIEQGQHERDLNALTDHVRIALKAQICHQH-  585

Query  593  SGQNILPAYLLAPNVEETVRGAIRQTSAGSYLALDPNASRKLVDNIKRVAGDLTAAAQKP  652
              +N L + L++P+ E  +R+++RQT   SY+AL+P+ +  LV++++        A+ +P
Sbjct  586  CEENTLHTWLVTPETEVLLRDSLRQTQNESYFALEPELGNALVEQLREAFP--LQASPRP  643

Query  653  VLLTSMDIRRYLRKMIEQDLYELPVLSYQELTQEINVQPLARVDL  697
            VLL + D+R  LR ++ +++ ++PVLS+ EL   ++VQ L+R+DL
Sbjct  644  VLLVAQDLRSPLRSLLTDQFHHVPVLSFAELIPTVQVQVLGRIDL  688

28) lcrD in NC_015717


> AY597281|10|G10|51103113|AAT96256.1|Pseudomonas_viridiflava_ME3.1b|+|9189..11279|hrcV|-|HrcV
Length=696

 Score =  365 bits (1373),  Expect = 4e-102, Method: Compositional matrix adjust.
 Identities = 283/661 (43%), Positives = 465/661 (71%), Gaps = 19/661 (2%)

Query  40   DMLQALNLTISAILLMVAVYIKSPLAFVSFPsllllttlfrlslGIASTRLILLEANAGD  99
            D+L ALN+ IS++L+++A+Y+  PLAF +FP++LLLTT+FRLSL+IA+TRLILL+ +AG+
Sbjct  44   DVLIALNICISSLLIVLAMYLPRPLAFSTFPAVLLLTTMFRLSLSIATTRLILLQQDAGH  103

Query  100  IITTFGNFVVAGNLVVGAVIFLIITIVQFIVITKGSERVAEVAARFSLDAMPGKQMSIDG  159
            I+ +FG+FVV+GNL VG VIFLI+TIV+F+VITKGSERVAEVAARF+LDAMPGKQMSID+
Sbjct  104  IVEAFGSFVVGGNLAVGLVIFLILTIVNFLVITKGSERVAEVAARFTLDAMPGKQMSIDS  163

Query  160  DMRAGTIDMNEARRRRGMVEKESQLYGAMDGAMKFVKGDaiagligiavnllggiaigag  219
            D+RA  I++ EAR+RR  + KESQL+GAMDGAMKFVKGDAIAGL+ + +NL+GG++IG  
Sbjct  164  DLRANLINVREARHRREQLSKESQLFGAMDGAMKFVKGDAIAGLVIVFINLIGGFSIGVL  223

Query  220  qlgMSVSDAVNTYSILTIGDGLVGQIPGLFTSITAGFIVTRVSSEE--AGTNLGDEIGGE  277
            Q GM  +DA++ YS+LTIGDGL++QIP+L+ S+TAG I+TRV+++   A++N+G+EI+ +
Sbjct  224  QNGMEAGDAMHLYSVLTIGDGLIAQIPALLISLTAGMIITRVAPDSQTADANIGHEIAEQ  283

Query  278  VTAQPKALMVASSILVIFAVIPGFPTTIFLALAVLSGGGGYMLHRQATMPKQDGDPFSAN  337
            +T+QPKA + +S  ++ F++IPG PT +F  +A+L   +G +  ++      + D+++A 
Sbjct  284  LTSQPKAWVFSSIGMMGFGLIPGMPTLVFACIALLCLFSGLIQLWRIRQKELHQDSIGAA  343

Query  338  LPAASASGGTPTVRRAGNDADDFSLTVPVMVDVGTDVQTLIRPDALNDTLAQVRRALYYD  397
              +A+   G   +RR       F+ + + +++  +  Q     D L + + Q R +L  +
Sbjct  344  SKGAPELNGREDIRR-------FNPSRAYLLQCHSSHQGTAELDRLIQGIRQRRNTLVHN  396

Query  398  LGVPFPGINLRLNDRYNGGRYVILLNEVPCGEGHMRSGFLLARDSVENLSLLGIPNETDK  457
            +G+ +P++++ + D+++ + + + + EVP     +R+ F  AR +V++  +   + E ++
Sbjct  397  FGLTLPSFDMEFADHFEPDEFRFCVYEVP----FIRATFTNARLAVDHREIDEDAGEPGR  452

Query  458  PFLPLIETIWV-AQEHRPALEAGSVSFMEPAQLLSYHIGHVLRRYAEEFIGIQETRFLLS  516
              +   ET WV  + + P L     + + + +L+  ++++ ++  + +FIG+QE++ +LS
Sbjct  453  --VERDETRWVWVDIDDPLLKEEEHAGVSSLELILERMSRAFQATGPQFIGLQESKAILS  510

Query  517  RMEERFPELVKEVQRIVPLQRIAEILQRLVSEGVSVRNMRAILTALIDWGQKEKDVVLLT  576
            ++E   PEL +E+QR +PL R+A +LQRL +E VS+R++R+I  +LI+ GQ E+D+  LT
Sbjct  511  WLESEQPELAQELQRTLPLARFAAVLQRLSAELVSLRSVRPIAETLIEQGQHERDLNALT  570

Query  577  EHIRGALKRQICYRHSSGLNILPAYVVTPELEDTVRNAVRQTSSGSYLALDPRTTRQIIE  636
            +H+R ALK QIC +H    N L + +VTPE E  +R+++RQT + SY+AL+P     ++E
Sbjct  571  DHVRIALKAQICHQHCEE-NTLHTWLVTPETEVLLRDSLRQTQNESYFALEPELGNALVE  629

Query  637  KvqgalggvgqqaRKPVLLTAMDIRRYVKKIVEGDCPDLPVLSYQELTPEITVQPLARVS  696
            +     +   Q + +PVLL A D+R  ++ ++ ++  ++PVLS+ EL P + VQ L+R+ 
Sbjct  630  Q--LREAFPLQASPRPVLLVAQDLRSPLRSLLTDQFHHVPVLSFAELIPTVQVQVLGRID  687

Query  697  L  697
            L
Sbjct  688  L  688

29) bcrD in NC_018829


> AY597281|10|G10|51103113|AAT96256.1|Pseudomonas_viridiflava_ME3.1b|+|9189..11279|hrcV|-|HrcV
Length=696

 Score =  359 bits (1348),  Expect = 3e-100, Method: Compositional matrix adjust.
 Identities = 320/703 (46%), Positives = 500/703 (72%), Gaps = 22/703 (3%)

Query  4    KKSILRLQRAVALAT-SRNDivlavlivaivFMMILPLPTTLVDVLIGANMTLSAVLLMV  62
             ++I++L   +ALA  +R +IV AV+++AIVFMMILPLPT LVDVLI+ N+ +S++L+++
Sbjct  1    MNGIIHLLNRLALAVMGRTEIVGAVMVMAIVFMMILPLPTWLVDVLIALNICISSLLIVL  60

Query  63   AMYlpsplafssfpsvllvTTLFRLGISIATTRLILLQGDAGHIIETfgnfvvggnlivg  122
            AMYLP PLAFS+FP+VLL+TT+FRL++SIATTRLILLQ DAGHI+E+FG+FVVGGNL VG
Sbjct  61   AMYLPRPLAFSTFPAVLLLTTMFRLSLSIATTRLILLQQDAGHIVEAFGSFVVGGNLAVG  120

Query  123  lvvflilTIVQFVVITKGAERVAEVAARFSLDAMPGKQMSIDADLRAGTIDMDEARRRRR  182
            LV+FLILTIV+F+VITKG+ERVAEVAARF+LDAMPGKQMSID+DLRA  I++ EAR+RR 
Sbjct  121  LVIFLILTIVNFLVITKGSERVAEVAARFTLDAMPGKQMSIDSDLRANLINVREARHRRE  180

Query  183  TVEKESQLYGAMDGAMKFVKGDAIAGLIIvavnllggmlvgvlqrglSAGEAVQTYAILT  242
             + KESQL+GAMDGAMKFVKGDAIAGL+IV +NL+GG  +GVLQ G+ AG+A++ Y++LT
Sbjct  181  QLSKESQLFGAMDGAMKFVKGDAIAGLVIVFINLIGGFSIGVLQNGMEAGDAMHLYSVLT  240

Query  243  IGDGLIAQIPALFIAICAGIIVTRV--QTGDSPSNVGTDIGAQVLAQPRALVIAGAISAG  300
            IGDGLIAQIPAL+I++ AG+I+TRV  ++  + +N+G +I+ Q+ +QP+A V+++    G
Sbjct  241  IGDGLIAQIPALLISLTAGMIITRVAPDSQTADANIGHEIAEQLTSQPKAWVFSSIGMMG  300

Query  301  LGLIPGMPTLVFFALAAVVGTIGFVLLRASQRPPEGAEPALAGMAADGQPRTRAPADGQA  360
            +GLIPGMPTLVF  +A +    G++ L+  ++     ++   G A+ G P   +  D + 
Sbjct  301  FGLIPGMPTLVFACIALLCLFSGLIQLWRIRQKELHQDS--IGAASKGAPELNGREDIR-  357

Query  361  EFAPTVPLIIDVAARLQPRFEPATLTDDLLQIRRALYFDLGVPFPGIQLRFTEALAANTY  420
             F P+ + +++  +  Q   E   L +++ Q R +L  ++G+ +P++++ F++ + ++ +
Sbjct  358  RFNPSRAYLLQCHSSHQGTAELDRLIQGIRQRRNTLVHNFGLTLPSFDMEFADHFEPDEF  417

Query  421  TIVLSEIPVAQGMLRDDAVLV--RDTEQNLQALRIAYETGAAFLPDTPTIWV--AASLTG  476
             + + E+P  ++ + +  + V  R+ +++      A E G     +T  +WV    +L  
Sbjct  418  RFCVYEVPFIRATFTNARLAVDHREIDED------AGEPGRVERDETRWVWVDIDDPLLK  471

Query  477  ALRDAGIPYLGISQILTWHLAYVLKKYSADFIGIQETRFLLSAMEERFPDLVKECLRVMP  536
               +AG++ L +  IL  +++  ++  +++FIG+QE++ +LS +E   P+L +E  R +P
Sbjct  472  EEEHAGVSSLEL--ILE-RMSRAFQATGPQFIGLQESKAILSWLESEQPELAQELQRTLP  528

Query  537  VQKIAEILQRLVSEEVSIRNLRAVLEALVEWGQKEKDTVLLTEYVRIALKRYISHKYTSG  596
            + ++A +LQRL +E VS+R++R++ E+L+E GQ E+D   LT+ VRIALK  I H+    
Sbjct  529  LARFAAVLQRLSAELVSLRSVRPIAETLIEQGQHERDLNALTDHVRIALKAQICHQH-CE  587

Query  597  HNILPAYLLAPKVEETVRAAIRQTAAGSYLALDPDTTRRLVEHIRQCVGDLAAGASRPVL  656
            +N L + L++P  E  +R ++RQT   SY+AL+P+    LVE++R+       +++RPVL
Sbjct  588  ENTLHTWLVTPETEVLLRDSLRQTQNESYFALEPELGNALVEQLREAFP--LQASPRPVL  645

Query  657  LTSMDIRRYTRKMIEADLYALPVLSYQELTPEINVQPLGRVDL  699
            L + D+R   R ++  ++  +PVLS+ EL P ++VQ LGR+DL
Sbjct  646  LVAQDLRSPLRSLLTDQFHHVPVLSFAELIPTVQVQVLGRIDL  688

30) yscV in NC_016642


> AY597281|10|G10|51103113|AAT96256.1|Pseudomonas_viridiflava_ME3.1b|+|9189..11279|hrcV|-|HrcV
Length=696

 Score =  359 bits (1348),  Expect = 3e-100, Method: Compositional matrix adjust.
 Identities = 290/703 (42%), Positives = 484/703 (69%), Gaps = 36/703 (5%)

Query  4    RNDVLLAFLLIAIVFMMILPLPTVLVDTliainlslaaillmaalylKDVVALSAFPsil  63
            R +++ A +++AIVFMMILPLPT LVD LIA+N+ ++++L++ A+YL   +A+S+FP++L
Sbjct  18   RTEIVGAVMVMAIVFMMILPLPTWLVDVLIALNICISSLLIVLAMYLPRPLAFSTFPAVL  77

Query  64   llttlfrlslsitttrlillKADAGEIIDTFGNFVVQGNLVVGIVIFLILTIVNFLVITK  123
            LLTT+FRLSLSI+TTRLILL+ DAG+I+++FG+FVV GNL VG+VIFLILTIVNFLVITK
Sbjct  78   LLTTMFRLSLSIATTRLILLQQDAGHIVEAFGSFVVGGNLAVGLVIFLILTIVNFLVITK  137

Query  124  GSERVAEVSARFSLDAMPGKQMSIDSDMRAGQIELDEAKRRRSKLEKESQLYGSMDGAMK  183
            GSERVAEV+ARF+LDAMPGKQMSIDSD+RA  I++ EA++RR +L KESQL+G+MDGAMK
Sbjct  138  GSERVAEVAARFTLDAMPGKQMSIDSDLRANLINVREARHRREQLSKESQLFGAMDGAMK  197

Query  184  FVKGDAIAGLIITAVNIIGGVIIGTSQHGMSAVDALDRYTILTIGDGLVAQIPALFISIT  243
            FVKGDAIAGL+I  +N+IGG  IG  Q+GM A DA++ Y++LTIGDGL+AQIPAL+IS+T
Sbjct  198  FVKGDAIAGLVIVFINLIGGFSIGVLQNGMEAGDAMHLYSVLTIGDGLIAQIPALLISLT  257

Query  244  AGFMVTRVSTDD---SSDLGSDIAKQLNGEPKALMIAAAIMVGFALIPGFPSVIF--LLL  298
            AG ++TRV+ D     +++G +IA QL ++PKA ++++  M+GF+LIPG P+++F  + L
Sbjct  258  AGMIITRVAPDSQTADANIGHEIAEQLTSQPKAWVFSSIGMMGFGLIPGMPTLVFACIAL  317

Query  299  AAIFGSIAYFAMRRTKTQSAKKDSQQLSAFAPAIAPEGEAQMMPDEDMATEVEAAQDLAI  358
              +F+++  + ++R + +   +DS        + A+ G +++   ED+           +
Sbjct  318  LCLFSGL--IQLWRIRQKELHQDS-------IGAASKGAPELNGREDIRR---------F  359

Query  359  TITVPLIVDISSSVRSTLNPKKLDREVAKVRKALYFDLGVPFPGIKLRLNESLPEGEYRI  418
              + + +++  SS ++T +  +L + + + R++L  ++G+ +P++ + + + +  +E+R+
Sbjct  360  NPSRAYLLQCHSSHQGTAELDRLIQGIRQRRNTLVHNFGLTLPSFDMEFADHFEPDEFRF  419

Query  419  LVNEVPVARGAARSGYFIARETPPNLAMFNIPYEEGDSFLPNTPSFWV--SNRHFEQATR  476
             V EVP  R++    +  AR +  +  + + + E G     +T   WV   +  + +  +
Sbjct  420  CVYEVPFIRAT----FTNARLAVDHREIDEDAGEPGRVERDETRWVWVDIDDPLLKEEEH  475

Query  477  AGIQTLTLTGMLSLHLAHVLKQHAAEFLGIQECMFLLKHMESDFDELVREVNRAVPLISL  536
            AG+ +L L  +L  ++++ ++  +++F+G+QE   +L  +ES+  EL +E++R++PL  +
Sbjct  476  AGVSSLEL--ILE-RMSRAFQATGPQFIGLQESKAILSWLESEQPELAQELQRTLPLARF  532

Query  537  ADVLKRLVREDISIRDMRTILQAIVEWGQKEKDPLMLTEHIRMALSRYITHKYSAGQHII  596
            A VL+RL  E +S+R +R I ++++E GQ E+D   LT+H+R+AL   I H+    ++ +
Sbjct  533  AAVLQRLSAELVSLRSVRPIAETLIEQGQHERDLNALTDHVRIALKAQICHQHCE-ENTL  591

Query  597  PAYLIDKDIEDEVRGAIRQTSGASYLALSPDTHRQLITVMRSAIGDNLAHNGIAPVILVP  656
             + L+  + E  +R+++RQT   SY+AL P+    L+  +R A+     + +  PV+LV+
Sbjct  592  HTWLVTPETEVLLRDSLRQTQNESYFALEPELGNALVEQLREAFP---LQASPRPVLLVA  648

Query  657  MDIRRFFRKVIERDYADLAVLSFQELAPNANIQPLEKISLRGK  699
             D+R  +R ++  ++ +++VLSF EL P  ++Q L +I L+  
Sbjct  649  QDLRSPLRSLLTDQFHHVPVLSFAELIPTVQVQVLGRIDLQET  691

31) lcrD in NC_010157


> AY597281|10|G10|51103113|AAT96256.1|Pseudomonas_viridiflava_ME3.1b|+|9189..11279|hrcV|-|HrcV
Length=696

 Score =  358 bits (1346),  Expect = 4e-100, Method: Compositional matrix adjust.
 Identities = 286/663 (44%), Positives = 467/663 (71%), Gaps = 33/663 (4%)

Query  47   NMTISVVLLMIAIYINSPLQFSAFPAVLLVTTLFRLALSVSTTRMILLQADAGQIVYTfg  106
            N+ IS +L+++A+Y+  PL FS+FPAVLL+TT+FRL+LS++TTR+ILLQ DAG+IV +FG
Sbjct  50   NICISSLLIVLAMYLPRPLAFSTFPAVLLLTTMFRLSLSIATTRLILLQQDAGHIVEAFG  109

Query  107  nfvvggnlivgivifliitivqflvitKGSERVAEVSARFSLDAMPGKQMSIDGDMRAGV  166
            +FVVGGNL VG+VIFLI+TIV+FLVITKGSERVAEV+ARF+LDAMPGKQMSID+D+RA +
Sbjct  110  SFVVGGNLAVGLVIFLILTIVNFLVITKGSERVAEVAARFTLDAMPGKQMSIDSDLRANL  169

Query  167  IDVNEARERRATIEKESQMFGSMDGAMKFVKGDAIAGLIIIFVNILGGVTIGVTQKGLAA  226
            I+V EAR+RR  + KESQ+FG+MDGAMKFVKGDAIAGL+I+F+N++GG +IGV Q+G+ A
Sbjct  170  INVREARHRREQLSKESQLFGAMDGAMKFVKGDAIAGLVIVFINLIGGFSIGVLQNGMEA  229

Query  227  AEALQLYSILTVGDGMVSQVPALLIAITAGIIVTRVSSED---SSDLGSDIGKQVVAQPK  283
            ++A++LYS+LT+GDG+++Q+PALLI++TAG+I+TRV+++     +++G +I+ Q+ +QPK
Sbjct  230  GDAMHLYSVLTIGDGLIAQIPALLISLTAGMIITRVAPDSQTADANIGHEIAEQLTSQPK  289

Query  284  AMliggvllllfglipgfpTVTFLILALLVGC--GGYMLSRKQSRNDEANQDLQSILTSG  341
            A +++++ ++ FGLIPG PT+ F  +ALL  C  +G +  ++  R+ E +QD  SI +++
Sbjct  290  AWVFSSIGMMGFGLIPGMPTLVFACIALL--CLFSGLIQLWR-IRQKELHQD--SIGAAS  344

Query  342  SGAPAARTKAKTSGANKGRLGEQEAFAMTVPLLIDVDSSQQEALEAIALNDELVRVRRAL  401
             GAP    +         R+    A+      L++ +SS+Q + E   L + + + R +L
Sbjct  345  KGAPELNGREDIR-----RFNPSRAY------LLQCHSSHQGTAELDRLIQGIRQRRNTL  393

Query  402  YLDLGVPFPGIHLRFNEGMGEGEYIISLQEVPVARGELKAGYLLVRESVSQLELLGIPYE  461
              ++G+ +P++++ F +    +E+ + + EVP  R+ +  +    R +V + E+   + E
Sbjct  394  VHNFGLTLPSFDMEFADHFEPDEFRFCVYEVPFIRATFTNA----RLAVDHREIDEDAGE  449

Query  462  KGEHLLPDQEAFWVSVEYEERL--EKSQLEFFSHSQVLTWHLSHVLREYAEDFIGIQETR  519
             G   +  +E+ WV V+ ++ L  E  +    S   +L  ++S+ ++  + +FIG+QE++
Sbjct  450  PGR--VERDETRWVWVDIDDPLLKEEEHAGVSSLELILE-RMSRAFQATGPQFIGLQESK  506

Query  520  YLLEQMEGGYGELIKEVQRIVPLQRMTEILQRLVGEDISIRNMRSILEAMVEWGQKEKDV  579
             +L  +E+   EL +E+QR +PL R + +LQRL +E +S+R++R+I E+++E GQ E+D+
Sbjct  507  AILSWLESEQPELAQELQRTLPLARFAAVLQRLSAELVSLRSVRPIAETLIEQGQHERDL  566

Query  580  VQLTEYIRSSLKRYICYKYANGNNILPAYLFDQEVEEKIRSGVRQTSAGSYLALEPAVTE  639
              LT+ +R +LK  IC +  + +N L + L   E E  +R ++RQT   SY+ALEP + +
Sbjct  567  NALTDHVRIALKAQICHQHCE-ENTLHTWLVTPETEVLLRDSLRQTQNESYFALEPELGN  625

Query  640  SLLEQVRKTIGDLSQIQSKPVLIVSMDIRRYVRKLIESEYYGLPVLSYQELTQQINIQPL  699
            +L+EQ+R ++    Q  ++PVL+V+ D+R  +R L+  ++  +PVLS+ EL   +++Q L
Sbjct  626  ALVEQLREAFP--LQASPRPVLLVAQDLRSPLRSLLTDQFHHVPVLSFAELIPTVQVQVL  683

Query  700  GRI  702
            GRI
Sbjct  684  GRI  686

32) YPA_CD0028 in NC_008122


> AY597281|10|G10|51103113|AAT96256.1|Pseudomonas_viridiflava_ME3.1b|+|9189..11279|hrcV|-|HrcV
Length=696

 Score =  358 bits (1346),  Expect = 4e-100, Method: Compositional matrix adjust.
 Identities = 286/663 (44%), Positives = 467/663 (71%), Gaps = 33/663 (4%)

Query  47   NMTISVVLLMIAIYINSPLQFSAFPAVLLVTTLFRLALSVSTTRMILLQADAGQIVYTfg  106
            N+ IS +L+++A+Y+  PL FS+FPAVLL+TT+FRL+LS++TTR+ILLQ DAG+IV +FG
Sbjct  50   NICISSLLIVLAMYLPRPLAFSTFPAVLLLTTMFRLSLSIATTRLILLQQDAGHIVEAFG  109

Query  107  nfvvggnlivgivifliitivqflvitKGSERVAEVSARFSLDAMPGKQMSIDGDMRAGV  166
            +FVVGGNL VG+VIFLI+TIV+FLVITKGSERVAEV+ARF+LDAMPGKQMSID+D+RA +
Sbjct  110  SFVVGGNLAVGLVIFLILTIVNFLVITKGSERVAEVAARFTLDAMPGKQMSIDSDLRANL  169

Query  167  IDVNEARERRATIEKESQMFGSMDGAMKFVKGDAIAGLIIIFVNILGGVTIGVTQKGLAA  226
            I+V EAR+RR  + KESQ+FG+MDGAMKFVKGDAIAGL+I+F+N++GG +IGV Q+G+ A
Sbjct  170  INVREARHRREQLSKESQLFGAMDGAMKFVKGDAIAGLVIVFINLIGGFSIGVLQNGMEA  229

Query  227  AEALQLYSILTVGDGMVSQVPALLIAITAGIIVTRVSSED---SSDLGSDIGKQVVAQPK  283
            ++A++LYS+LT+GDG+++Q+PALLI++TAG+I+TRV+++     +++G +I+ Q+ +QPK
Sbjct  230  GDAMHLYSVLTIGDGLIAQIPALLISLTAGMIITRVAPDSQTADANIGHEIAEQLTSQPK  289

Query  284  AMliggvllllfglipgfpTVTFLILALLVGC--GGYMLSRKQSRNDEANQDLQSILTSG  341
            A +++++ ++ FGLIPG PT+ F  +ALL  C  +G +  ++  R+ E +QD  SI +++
Sbjct  290  AWVFSSIGMMGFGLIPGMPTLVFACIALL--CLFSGLIQLWR-IRQKELHQD--SIGAAS  344

Query  342  SGAPAARTKAKTSGANKGRLGEQEAFAMTVPLLIDVDSSQQEALEAIALNDELVRVRRAL  401
             GAP    +         R+    A+      L++ +SS+Q + E   L + + + R +L
Sbjct  345  KGAPELNGREDIR-----RFNPSRAY------LLQCHSSHQGTAELDRLIQGIRQRRNTL  393

Query  402  YLDLGVPFPGIHLRFNEGMGEGEYIISLQEVPVARGELKAGYLLVRESVSQLELLGIPYE  461
              ++G+ +P++++ F +    +E+ + + EVP  R+ +  +    R +V + E+   + E
Sbjct  394  VHNFGLTLPSFDMEFADHFEPDEFRFCVYEVPFIRATFTNA----RLAVDHREIDEDAGE  449

Query  462  KGEHLLPDQEAFWVSVEYEERL--EKSQLEFFSHSQVLTWHLSHVLREYAEDFIGIQETR  519
             G   +  +E+ WV V+ ++ L  E  +    S   +L  ++S+ ++  + +FIG+QE++
Sbjct  450  PGR--VERDETRWVWVDIDDPLLKEEEHAGVSSLELILE-RMSRAFQATGPQFIGLQESK  506

Query  520  YLLEQMEGGYGELIKEVQRIVPLQRMTEILQRLVGEDISIRNMRSILEAMVEWGQKEKDV  579
             +L  +E+   EL +E+QR +PL R + +LQRL +E +S+R++R+I E+++E GQ E+D+
Sbjct  507  AILSWLESEQPELAQELQRTLPLARFAAVLQRLSAELVSLRSVRPIAETLIEQGQHERDL  566

Query  580  VQLTEYIRSSLKRYICYKYANGNNILPAYLFDQEVEEKIRSGVRQTSAGSYLALEPAVTE  639
              LT+ +R +LK  IC +  + +N L + L   E E  +R ++RQT   SY+ALEP + +
Sbjct  567  NALTDHVRIALKAQICHQHCE-ENTLHTWLVTPETEVLLRDSLRQTQNESYFALEPELGN  625

Query  640  SLLEQVRKTIGDLSQIQSKPVLIVSMDIRRYVRKLIESEYYGLPVLSYQELTQQINIQPL  699
            +L+EQ+R ++    Q  ++PVL+V+ D+R  +R L+  ++  +PVLS+ EL   +++Q L
Sbjct  626  ALVEQLREAFP--LQASPRPVLLVAQDLRSPLRSLLTDQFHHVPVLSFAELIPTVQVQVL  683

Query  700  GRI  702
            GRI
Sbjct  684  GRI  686

33) yscV in NC_005813


> AY597281|10|G10|51103113|AAT96256.1|Pseudomonas_viridiflava_ME3.1b|+|9189..11279|hrcV|-|HrcV
Length=696

 Score =  358 bits (1346),  Expect = 4e-100, Method: Compositional matrix adjust.
 Identities = 286/663 (44%), Positives = 467/663 (71%), Gaps = 33/663 (4%)

Query  47   NMTISVVLLMIAIYINSPLQFSAFPAVLLVTTLFRLALSVSTTRMILLQADAGQIVYTfg  106
            N+ IS +L+++A+Y+  PL FS+FPAVLL+TT+FRL+LS++TTR+ILLQ DAG+IV +FG
Sbjct  50   NICISSLLIVLAMYLPRPLAFSTFPAVLLLTTMFRLSLSIATTRLILLQQDAGHIVEAFG  109

Query  107  nfvvggnlivgivifliitivqflvitKGSERVAEVSARFSLDAMPGKQMSIDGDMRAGV  166
            +FVVGGNL VG+VIFLI+TIV+FLVITKGSERVAEV+ARF+LDAMPGKQMSID+D+RA +
Sbjct  110  SFVVGGNLAVGLVIFLILTIVNFLVITKGSERVAEVAARFTLDAMPGKQMSIDSDLRANL  169

Query  167  IDVNEARERRATIEKESQMFGSMDGAMKFVKGDAIAGLIIIFVNILGGVTIGVTQKGLAA  226
            I+V EAR+RR  + KESQ+FG+MDGAMKFVKGDAIAGL+I+F+N++GG +IGV Q+G+ A
Sbjct  170  INVREARHRREQLSKESQLFGAMDGAMKFVKGDAIAGLVIVFINLIGGFSIGVLQNGMEA  229

Query  227  AEALQLYSILTVGDGMVSQVPALLIAITAGIIVTRVSSED---SSDLGSDIGKQVVAQPK  283
            ++A++LYS+LT+GDG+++Q+PALLI++TAG+I+TRV+++     +++G +I+ Q+ +QPK
Sbjct  230  GDAMHLYSVLTIGDGLIAQIPALLISLTAGMIITRVAPDSQTADANIGHEIAEQLTSQPK  289

Query  284  AMliggvllllfglipgfpTVTFLILALLVGC--GGYMLSRKQSRNDEANQDLQSILTSG  341
            A +++++ ++ FGLIPG PT+ F  +ALL  C  +G +  ++  R+ E +QD  SI +++
Sbjct  290  AWVFSSIGMMGFGLIPGMPTLVFACIALL--CLFSGLIQLWR-IRQKELHQD--SIGAAS  344

Query  342  SGAPAARTKAKTSGANKGRLGEQEAFAMTVPLLIDVDSSQQEALEAIALNDELVRVRRAL  401
             GAP    +         R+    A+      L++ +SS+Q + E   L + + + R +L
Sbjct  345  KGAPELNGREDIR-----RFNPSRAY------LLQCHSSHQGTAELDRLIQGIRQRRNTL  393

Query  402  YLDLGVPFPGIHLRFNEGMGEGEYIISLQEVPVARGELKAGYLLVRESVSQLELLGIPYE  461
              ++G+ +P++++ F +    +E+ + + EVP  R+ +  +    R +V + E+   + E
Sbjct  394  VHNFGLTLPSFDMEFADHFEPDEFRFCVYEVPFIRATFTNA----RLAVDHREIDEDAGE  449

Query  462  KGEHLLPDQEAFWVSVEYEERL--EKSQLEFFSHSQVLTWHLSHVLREYAEDFIGIQETR  519
             G   +  +E+ WV V+ ++ L  E  +    S   +L  ++S+ ++  + +FIG+QE++
Sbjct  450  PGR--VERDETRWVWVDIDDPLLKEEEHAGVSSLELILE-RMSRAFQATGPQFIGLQESK  506

Query  520  YLLEQMEGGYGELIKEVQRIVPLQRMTEILQRLVGEDISIRNMRSILEAMVEWGQKEKDV  579
             +L  +E+   EL +E+QR +PL R + +LQRL +E +S+R++R+I E+++E GQ E+D+
Sbjct  507  AILSWLESEQPELAQELQRTLPLARFAAVLQRLSAELVSLRSVRPIAETLIEQGQHERDL  566

Query  580  VQLTEYIRSSLKRYICYKYANGNNILPAYLFDQEVEEKIRSGVRQTSAGSYLALEPAVTE  639
              LT+ +R +LK  IC +  + +N L + L   E E  +R ++RQT   SY+ALEP + +
Sbjct  567  NALTDHVRIALKAQICHQHCE-ENTLHTWLVTPETEVLLRDSLRQTQNESYFALEPELGN  625

Query  640  SLLEQVRKTIGDLSQIQSKPVLIVSMDIRRYVRKLIESEYYGLPVLSYQELTQQINIQPL  699
            +L+EQ+R ++    Q  ++PVL+V+ D+R  +R L+  ++  +PVLS+ EL   +++Q L
Sbjct  626  ALVEQLREAFP--LQASPRPVLLVAQDLRSPLRSLLTDQFHHVPVLSFAELIPTVQVQVL  683

Query  700  GRI  702
            GRI
Sbjct  684  GRI  686

34) yscV in NC_003131


> AY597281|10|G10|51103113|AAT96256.1|Pseudomonas_viridiflava_ME3.1b|+|9189..11279|hrcV|-|HrcV
Length=696

 Score =  358 bits (1346),  Expect = 4e-100, Method: Compositional matrix adjust.
 Identities = 286/663 (44%), Positives = 467/663 (71%), Gaps = 33/663 (4%)

Query  47   NMTISVVLLMIAIYINSPLQFSAFPAVLLVTTLFRLALSVSTTRMILLQADAGQIVYTfg  106
            N+ IS +L+++A+Y+  PL FS+FPAVLL+TT+FRL+LS++TTR+ILLQ DAG+IV +FG
Sbjct  50   NICISSLLIVLAMYLPRPLAFSTFPAVLLLTTMFRLSLSIATTRLILLQQDAGHIVEAFG  109

Query  107  nfvvggnlivgivifliitivqflvitKGSERVAEVSARFSLDAMPGKQMSIDGDMRAGV  166
            +FVVGGNL VG+VIFLI+TIV+FLVITKGSERVAEV+ARF+LDAMPGKQMSID+D+RA +
Sbjct  110  SFVVGGNLAVGLVIFLILTIVNFLVITKGSERVAEVAARFTLDAMPGKQMSIDSDLRANL  169

Query  167  IDVNEARERRATIEKESQMFGSMDGAMKFVKGDAIAGLIIIFVNILGGVTIGVTQKGLAA  226
            I+V EAR+RR  + KESQ+FG+MDGAMKFVKGDAIAGL+I+F+N++GG +IGV Q+G+ A
Sbjct  170  INVREARHRREQLSKESQLFGAMDGAMKFVKGDAIAGLVIVFINLIGGFSIGVLQNGMEA  229

Query  227  AEALQLYSILTVGDGMVSQVPALLIAITAGIIVTRVSSED---SSDLGSDIGKQVVAQPK  283
            ++A++LYS+LT+GDG+++Q+PALLI++TAG+I+TRV+++     +++G +I+ Q+ +QPK
Sbjct  230  GDAMHLYSVLTIGDGLIAQIPALLISLTAGMIITRVAPDSQTADANIGHEIAEQLTSQPK  289

Query  284  AMliggvllllfglipgfpTVTFLILALLVGC--GGYMLSRKQSRNDEANQDLQSILTSG  341
            A +++++ ++ FGLIPG PT+ F  +ALL  C  +G +  ++  R+ E +QD  SI +++
Sbjct  290  AWVFSSIGMMGFGLIPGMPTLVFACIALL--CLFSGLIQLWR-IRQKELHQD--SIGAAS  344

Query  342  SGAPAARTKAKTSGANKGRLGEQEAFAMTVPLLIDVDSSQQEALEAIALNDELVRVRRAL  401
             GAP    +         R+    A+      L++ +SS+Q + E   L + + + R +L
Sbjct  345  KGAPELNGREDIR-----RFNPSRAY------LLQCHSSHQGTAELDRLIQGIRQRRNTL  393

Query  402  YLDLGVPFPGIHLRFNEGMGEGEYIISLQEVPVARGELKAGYLLVRESVSQLELLGIPYE  461
              ++G+ +P++++ F +    +E+ + + EVP  R+ +  +    R +V + E+   + E
Sbjct  394  VHNFGLTLPSFDMEFADHFEPDEFRFCVYEVPFIRATFTNA----RLAVDHREIDEDAGE  449

Query  462  KGEHLLPDQEAFWVSVEYEERL--EKSQLEFFSHSQVLTWHLSHVLREYAEDFIGIQETR  519
             G   +  +E+ WV V+ ++ L  E  +    S   +L  ++S+ ++  + +FIG+QE++
Sbjct  450  PGR--VERDETRWVWVDIDDPLLKEEEHAGVSSLELILE-RMSRAFQATGPQFIGLQESK  506

Query  520  YLLEQMEGGYGELIKEVQRIVPLQRMTEILQRLVGEDISIRNMRSILEAMVEWGQKEKDV  579
             +L  +E+   EL +E+QR +PL R + +LQRL +E +S+R++R+I E+++E GQ E+D+
Sbjct  507  AILSWLESEQPELAQELQRTLPLARFAAVLQRLSAELVSLRSVRPIAETLIEQGQHERDL  566

Query  580  VQLTEYIRSSLKRYICYKYANGNNILPAYLFDQEVEEKIRSGVRQTSAGSYLALEPAVTE  639
              LT+ +R +LK  IC +  + +N L + L   E E  +R ++RQT   SY+ALEP + +
Sbjct  567  NALTDHVRIALKAQICHQHCE-ENTLHTWLVTPETEVLLRDSLRQTQNESYFALEPELGN  625

Query  640  SLLEQVRKTIGDLSQIQSKPVLIVSMDIRRYVRKLIESEYYGLPVLSYQELTQQINIQPL  699
            +L+EQ+R ++    Q  ++PVL+V+ D+R  +R L+  ++  +PVLS+ EL   +++Q L
Sbjct  626  ALVEQLREAFP--LQASPRPVLLVAQDLRSPLRSLLTDQFHHVPVLSFAELIPTVQVQVL  683

Query  700  GRI  702
            GRI
Sbjct  684  GRI  686

35) yscV in NC_017153


> AY597281|10|G10|51103113|AAT96256.1|Pseudomonas_viridiflava_ME3.1b|+|9189..11279|hrcV|-|HrcV
Length=696

 Score =  358 bits (1346),  Expect = 4e-100, Method: Compositional matrix adjust.
 Identities = 286/663 (44%), Positives = 467/663 (71%), Gaps = 33/663 (4%)

Query  47   NMTISVVLLMIAIYINSPLQFSAFPAVLLVTTLFRLALSVSTTRMILLQADAGQIVYTfg  106
            N+ IS +L+++A+Y+  PL FS+FPAVLL+TT+FRL+LS++TTR+ILLQ DAG+IV +FG
Sbjct  50   NICISSLLIVLAMYLPRPLAFSTFPAVLLLTTMFRLSLSIATTRLILLQQDAGHIVEAFG  109

Query  107  nfvvggnlivgivifliitivqflvitKGSERVAEVSARFSLDAMPGKQMSIDGDMRAGV  166
            +FVVGGNL VG+VIFLI+TIV+FLVITKGSERVAEV+ARF+LDAMPGKQMSID+D+RA +
Sbjct  110  SFVVGGNLAVGLVIFLILTIVNFLVITKGSERVAEVAARFTLDAMPGKQMSIDSDLRANL  169

Query  167  IDVNEARERRATIEKESQMFGSMDGAMKFVKGDAIAGLIIIFVNILGGVTIGVTQKGLAA  226
            I+V EAR+RR  + KESQ+FG+MDGAMKFVKGDAIAGL+I+F+N++GG +IGV Q+G+ A
Sbjct  170  INVREARHRREQLSKESQLFGAMDGAMKFVKGDAIAGLVIVFINLIGGFSIGVLQNGMEA  229

Query  227  AEALQLYSILTVGDGMVSQVPALLIAITAGIIVTRVSSED---SSDLGSDIGKQVVAQPK  283
            ++A++LYS+LT+GDG+++Q+PALLI++TAG+I+TRV+++     +++G +I+ Q+ +QPK
Sbjct  230  GDAMHLYSVLTIGDGLIAQIPALLISLTAGMIITRVAPDSQTADANIGHEIAEQLTSQPK  289

Query  284  AMliggvllllfglipgfpTVTFLILALLVGC--GGYMLSRKQSRNDEANQDLQSILTSG  341
            A +++++ ++ FGLIPG PT+ F  +ALL  C  +G +  ++  R+ E +QD  SI +++
Sbjct  290  AWVFSSIGMMGFGLIPGMPTLVFACIALL--CLFSGLIQLWR-IRQKELHQD--SIGAAS  344

Query  342  SGAPAARTKAKTSGANKGRLGEQEAFAMTVPLLIDVDSSQQEALEAIALNDELVRVRRAL  401
             GAP    +         R+    A+      L++ +SS+Q + E   L + + + R +L
Sbjct  345  KGAPELNGREDIR-----RFNPSRAY------LLQCHSSHQGTAELDRLIQGIRQRRNTL  393

Query  402  YLDLGVPFPGIHLRFNEGMGEGEYIISLQEVPVARGELKAGYLLVRESVSQLELLGIPYE  461
              ++G+ +P++++ F +    +E+ + + EVP  R+ +  +    R +V + E+   + E
Sbjct  394  VHNFGLTLPSFDMEFADHFEPDEFRFCVYEVPFIRATFTNA----RLAVDHREIDEDAGE  449

Query  462  KGEHLLPDQEAFWVSVEYEERL--EKSQLEFFSHSQVLTWHLSHVLREYAEDFIGIQETR  519
             G   +  +E+ WV V+ ++ L  E  +    S   +L  ++S+ ++  + +FIG+QE++
Sbjct  450  PGR--VERDETRWVWVDIDDPLLKEEEHAGVSSLELILE-RMSRAFQATGPQFIGLQESK  506

Query  520  YLLEQMEGGYGELIKEVQRIVPLQRMTEILQRLVGEDISIRNMRSILEAMVEWGQKEKDV  579
             +L  +E+   EL +E+QR +PL R + +LQRL +E +S+R++R+I E+++E GQ E+D+
Sbjct  507  AILSWLESEQPELAQELQRTLPLARFAAVLQRLSAELVSLRSVRPIAETLIEQGQHERDL  566

Query  580  VQLTEYIRSSLKRYICYKYANGNNILPAYLFDQEVEEKIRSGVRQTSAGSYLALEPAVTE  639
              LT+ +R +LK  IC +  + +N L + L   E E  +R ++RQT   SY+ALEP + +
Sbjct  567  NALTDHVRIALKAQICHQHCE-ENTLHTWLVTPETEVLLRDSLRQTQNESYFALEPELGN  625

Query  640  SLLEQVRKTIGDLSQIQSKPVLIVSMDIRRYVRKLIESEYYGLPVLSYQELTQQINIQPL  699
            +L+EQ+R ++    Q  ++PVL+V+ D+R  +R L+  ++  +PVLS+ EL   +++Q L
Sbjct  626  ALVEQLREAFP--LQASPRPVLLVAQDLRSPLRSLLTDQFHHVPVLSFAELIPTVQVQVL  683

Query  700  GRI  702
            GRI
Sbjct  684  GRI  686

36) yscV in NC_017157


> AY597281|10|G10|51103113|AAT96256.1|Pseudomonas_viridiflava_ME3.1b|+|9189..11279|hrcV|-|HrcV
Length=696

 Score =  358 bits (1346),  Expect = 4e-100, Method: Compositional matrix adjust.
 Identities = 286/663 (44%), Positives = 467/663 (71%), Gaps = 33/663 (4%)

Query  47   NMTISVVLLMIAIYINSPLQFSAFPAVLLVTTLFRLALSVSTTRMILLQADAGQIVYTfg  106
            N+ IS +L+++A+Y+  PL FS+FPAVLL+TT+FRL+LS++TTR+ILLQ DAG+IV +FG
Sbjct  50   NICISSLLIVLAMYLPRPLAFSTFPAVLLLTTMFRLSLSIATTRLILLQQDAGHIVEAFG  109

Query  107  nfvvggnlivgivifliitivqflvitKGSERVAEVSARFSLDAMPGKQMSIDGDMRAGV  166
            +FVVGGNL VG+VIFLI+TIV+FLVITKGSERVAEV+ARF+LDAMPGKQMSID+D+RA +
Sbjct  110  SFVVGGNLAVGLVIFLILTIVNFLVITKGSERVAEVAARFTLDAMPGKQMSIDSDLRANL  169

Query  167  IDVNEARERRATIEKESQMFGSMDGAMKFVKGDAIAGLIIIFVNILGGVTIGVTQKGLAA  226
            I+V EAR+RR  + KESQ+FG+MDGAMKFVKGDAIAGL+I+F+N++GG +IGV Q+G+ A
Sbjct  170  INVREARHRREQLSKESQLFGAMDGAMKFVKGDAIAGLVIVFINLIGGFSIGVLQNGMEA  229

Query  227  AEALQLYSILTVGDGMVSQVPALLIAITAGIIVTRVSSED---SSDLGSDIGKQVVAQPK  283
            ++A++LYS+LT+GDG+++Q+PALLI++TAG+I+TRV+++     +++G +I+ Q+ +QPK
Sbjct  230  GDAMHLYSVLTIGDGLIAQIPALLISLTAGMIITRVAPDSQTADANIGHEIAEQLTSQPK  289

Query  284  AMliggvllllfglipgfpTVTFLILALLVGC--GGYMLSRKQSRNDEANQDLQSILTSG  341
            A +++++ ++ FGLIPG PT+ F  +ALL  C  +G +  ++  R+ E +QD  SI +++
Sbjct  290  AWVFSSIGMMGFGLIPGMPTLVFACIALL--CLFSGLIQLWR-IRQKELHQD--SIGAAS  344

Query  342  SGAPAARTKAKTSGANKGRLGEQEAFAMTVPLLIDVDSSQQEALEAIALNDELVRVRRAL  401
             GAP    +         R+    A+      L++ +SS+Q + E   L + + + R +L
Sbjct  345  KGAPELNGREDIR-----RFNPSRAY------LLQCHSSHQGTAELDRLIQGIRQRRNTL  393

Query  402  YLDLGVPFPGIHLRFNEGMGEGEYIISLQEVPVARGELKAGYLLVRESVSQLELLGIPYE  461
              ++G+ +P++++ F +    +E+ + + EVP  R+ +  +    R +V + E+   + E
Sbjct  394  VHNFGLTLPSFDMEFADHFEPDEFRFCVYEVPFIRATFTNA----RLAVDHREIDEDAGE  449

Query  462  KGEHLLPDQEAFWVSVEYEERL--EKSQLEFFSHSQVLTWHLSHVLREYAEDFIGIQETR  519
             G   +  +E+ WV V+ ++ L  E  +    S   +L  ++S+ ++  + +FIG+QE++
Sbjct  450  PGR--VERDETRWVWVDIDDPLLKEEEHAGVSSLELILE-RMSRAFQATGPQFIGLQESK  506

Query  520  YLLEQMEGGYGELIKEVQRIVPLQRMTEILQRLVGEDISIRNMRSILEAMVEWGQKEKDV  579
             +L  +E+   EL +E+QR +PL R + +LQRL +E +S+R++R+I E+++E GQ E+D+
Sbjct  507  AILSWLESEQPELAQELQRTLPLARFAAVLQRLSAELVSLRSVRPIAETLIEQGQHERDL  566

Query  580  VQLTEYIRSSLKRYICYKYANGNNILPAYLFDQEVEEKIRSGVRQTSAGSYLALEPAVTE  639
              LT+ +R +LK  IC +  + +N L + L   E E  +R ++RQT   SY+ALEP + +
Sbjct  567  NALTDHVRIALKAQICHQHCE-ENTLHTWLVTPETEVLLRDSLRQTQNESYFALEPELGN  625

Query  640  SLLEQVRKTIGDLSQIQSKPVLIVSMDIRRYVRKLIESEYYGLPVLSYQELTQQINIQPL  699
            +L+EQ+R ++    Q  ++PVL+V+ D+R  +R L+  ++  +PVLS+ EL   +++Q L
Sbjct  626  ALVEQLREAFP--LQASPRPVLLVAQDLRSPLRSLLTDQFHHVPVLSFAELIPTVQVQVL  683

Query  700  GRI  702
            GRI
Sbjct  684  GRI  686

37) YPDSF_3983 in NC_009377


> AY597281|10|G10|51103113|AAT96256.1|Pseudomonas_viridiflava_ME3.1b|+|9189..11279|hrcV|-|HrcV
Length=696

 Score =  358 bits (1346),  Expect = 4e-100, Method: Compositional matrix adjust.
 Identities = 286/663 (44%), Positives = 467/663 (71%), Gaps = 33/663 (4%)

Query  47   NMTISVVLLMIAIYINSPLQFSAFPAVLLVTTLFRLALSVSTTRMILLQADAGQIVYTfg  106
            N+ IS +L+++A+Y+  PL FS+FPAVLL+TT+FRL+LS++TTR+ILLQ DAG+IV +FG
Sbjct  50   NICISSLLIVLAMYLPRPLAFSTFPAVLLLTTMFRLSLSIATTRLILLQQDAGHIVEAFG  109

Query  107  nfvvggnlivgivifliitivqflvitKGSERVAEVSARFSLDAMPGKQMSIDGDMRAGV  166
            +FVVGGNL VG+VIFLI+TIV+FLVITKGSERVAEV+ARF+LDAMPGKQMSID+D+RA +
Sbjct  110  SFVVGGNLAVGLVIFLILTIVNFLVITKGSERVAEVAARFTLDAMPGKQMSIDSDLRANL  169

Query  167  IDVNEARERRATIEKESQMFGSMDGAMKFVKGDAIAGLIIIFVNILGGVTIGVTQKGLAA  226
            I+V EAR+RR  + KESQ+FG+MDGAMKFVKGDAIAGL+I+F+N++GG +IGV Q+G+ A
Sbjct  170  INVREARHRREQLSKESQLFGAMDGAMKFVKGDAIAGLVIVFINLIGGFSIGVLQNGMEA  229

Query  227  AEALQLYSILTVGDGMVSQVPALLIAITAGIIVTRVSSED---SSDLGSDIGKQVVAQPK  283
            ++A++LYS+LT+GDG+++Q+PALLI++TAG+I+TRV+++     +++G +I+ Q+ +QPK
Sbjct  230  GDAMHLYSVLTIGDGLIAQIPALLISLTAGMIITRVAPDSQTADANIGHEIAEQLTSQPK  289

Query  284  AMliggvllllfglipgfpTVTFLILALLVGC--GGYMLSRKQSRNDEANQDLQSILTSG  341
            A +++++ ++ FGLIPG PT+ F  +ALL  C  +G +  ++  R+ E +QD  SI +++
Sbjct  290  AWVFSSIGMMGFGLIPGMPTLVFACIALL--CLFSGLIQLWR-IRQKELHQD--SIGAAS  344

Query  342  SGAPAARTKAKTSGANKGRLGEQEAFAMTVPLLIDVDSSQQEALEAIALNDELVRVRRAL  401
             GAP    +         R+    A+      L++ +SS+Q + E   L + + + R +L
Sbjct  345  KGAPELNGREDIR-----RFNPSRAY------LLQCHSSHQGTAELDRLIQGIRQRRNTL  393

Query  402  YLDLGVPFPGIHLRFNEGMGEGEYIISLQEVPVARGELKAGYLLVRESVSQLELLGIPYE  461
              ++G+ +P++++ F +    +E+ + + EVP  R+ +  +    R +V + E+   + E
Sbjct  394  VHNFGLTLPSFDMEFADHFEPDEFRFCVYEVPFIRATFTNA----RLAVDHREIDEDAGE  449

Query  462  KGEHLLPDQEAFWVSVEYEERL--EKSQLEFFSHSQVLTWHLSHVLREYAEDFIGIQETR  519
             G   +  +E+ WV V+ ++ L  E  +    S   +L  ++S+ ++  + +FIG+QE++
Sbjct  450  PGR--VERDETRWVWVDIDDPLLKEEEHAGVSSLELILE-RMSRAFQATGPQFIGLQESK  506

Query  520  YLLEQMEGGYGELIKEVQRIVPLQRMTEILQRLVGEDISIRNMRSILEAMVEWGQKEKDV  579
             +L  +E+   EL +E+QR +PL R + +LQRL +E +S+R++R+I E+++E GQ E+D+
Sbjct  507  AILSWLESEQPELAQELQRTLPLARFAAVLQRLSAELVSLRSVRPIAETLIEQGQHERDL  566

Query  580  VQLTEYIRSSLKRYICYKYANGNNILPAYLFDQEVEEKIRSGVRQTSAGSYLALEPAVTE  639
              LT+ +R +LK  IC +  + +N L + L   E E  +R ++RQT   SY+ALEP + +
Sbjct  567  NALTDHVRIALKAQICHQHCE-ENTLHTWLVTPETEVLLRDSLRQTQNESYFALEPELGN  625

Query  640  SLLEQVRKTIGDLSQIQSKPVLIVSMDIRRYVRKLIESEYYGLPVLSYQELTQQINIQPL  699
            +L+EQ+R ++    Q  ++PVL+V+ D+R  +R L+  ++  +PVLS+ EL   +++Q L
Sbjct  626  ALVEQLREAFP--LQASPRPVLLVAQDLRSPLRSLLTDQFHHVPVLSFAELIPTVQVQVL  683

Query  700  GRI  702
            GRI
Sbjct  684  GRI  686

38) yscV in NC_014017


> AY597281|10|G10|51103113|AAT96256.1|Pseudomonas_viridiflava_ME3.1b|+|9189..11279|hrcV|-|HrcV
Length=696

 Score =  358 bits (1346),  Expect = 4e-100, Method: Compositional matrix adjust.
 Identities = 286/663 (44%), Positives = 467/663 (71%), Gaps = 33/663 (4%)

Query  47   NMTISVVLLMIAIYINSPLQFSAFPAVLLVTTLFRLALSVSTTRMILLQADAGQIVYTfg  106
            N+ IS +L+++A+Y+  PL FS+FPAVLL+TT+FRL+LS++TTR+ILLQ DAG+IV +FG
Sbjct  50   NICISSLLIVLAMYLPRPLAFSTFPAVLLLTTMFRLSLSIATTRLILLQQDAGHIVEAFG  109

Query  107  nfvvggnlivgivifliitivqflvitKGSERVAEVSARFSLDAMPGKQMSIDGDMRAGV  166
            +FVVGGNL VG+VIFLI+TIV+FLVITKGSERVAEV+ARF+LDAMPGKQMSID+D+RA +
Sbjct  110  SFVVGGNLAVGLVIFLILTIVNFLVITKGSERVAEVAARFTLDAMPGKQMSIDSDLRANL  169

Query  167  IDVNEARERRATIEKESQMFGSMDGAMKFVKGDAIAGLIIIFVNILGGVTIGVTQKGLAA  226
            I+V EAR+RR  + KESQ+FG+MDGAMKFVKGDAIAGL+I+F+N++GG +IGV Q+G+ A
Sbjct  170  INVREARHRREQLSKESQLFGAMDGAMKFVKGDAIAGLVIVFINLIGGFSIGVLQNGMEA  229

Query  227  AEALQLYSILTVGDGMVSQVPALLIAITAGIIVTRVSSED---SSDLGSDIGKQVVAQPK  283
            ++A++LYS+LT+GDG+++Q+PALLI++TAG+I+TRV+++     +++G +I+ Q+ +QPK
Sbjct  230  GDAMHLYSVLTIGDGLIAQIPALLISLTAGMIITRVAPDSQTADANIGHEIAEQLTSQPK  289

Query  284  AMliggvllllfglipgfpTVTFLILALLVGC--GGYMLSRKQSRNDEANQDLQSILTSG  341
            A +++++ ++ FGLIPG PT+ F  +ALL  C  +G +  ++  R+ E +QD  SI +++
Sbjct  290  AWVFSSIGMMGFGLIPGMPTLVFACIALL--CLFSGLIQLWR-IRQKELHQD--SIGAAS  344

Query  342  SGAPAARTKAKTSGANKGRLGEQEAFAMTVPLLIDVDSSQQEALEAIALNDELVRVRRAL  401
             GAP    +         R+    A+      L++ +SS+Q + E   L + + + R +L
Sbjct  345  KGAPELNGREDIR-----RFNPSRAY------LLQCHSSHQGTAELDRLIQGIRQRRNTL  393

Query  402  YLDLGVPFPGIHLRFNEGMGEGEYIISLQEVPVARGELKAGYLLVRESVSQLELLGIPYE  461
              ++G+ +P++++ F +    +E+ + + EVP  R+ +  +    R +V + E+   + E
Sbjct  394  VHNFGLTLPSFDMEFADHFEPDEFRFCVYEVPFIRATFTNA----RLAVDHREIDEDAGE  449

Query  462  KGEHLLPDQEAFWVSVEYEERL--EKSQLEFFSHSQVLTWHLSHVLREYAEDFIGIQETR  519
             G   +  +E+ WV V+ ++ L  E  +    S   +L  ++S+ ++  + +FIG+QE++
Sbjct  450  PGR--VERDETRWVWVDIDDPLLKEEEHAGVSSLELILE-RMSRAFQATGPQFIGLQESK  506

Query  520  YLLEQMEGGYGELIKEVQRIVPLQRMTEILQRLVGEDISIRNMRSILEAMVEWGQKEKDV  579
             +L  +E+   EL +E+QR +PL R + +LQRL +E +S+R++R+I E+++E GQ E+D+
Sbjct  507  AILSWLESEQPELAQELQRTLPLARFAAVLQRLSAELVSLRSVRPIAETLIEQGQHERDL  566

Query  580  VQLTEYIRSSLKRYICYKYANGNNILPAYLFDQEVEEKIRSGVRQTSAGSYLALEPAVTE  639
              LT+ +R +LK  IC +  + +N L + L   E E  +R ++RQT   SY+ALEP + +
Sbjct  567  NALTDHVRIALKAQICHQHCE-ENTLHTWLVTPETEVLLRDSLRQTQNESYFALEPELGN  625

Query  640  SLLEQVRKTIGDLSQIQSKPVLIVSMDIRRYVRKLIESEYYGLPVLSYQELTQQINIQPL  699
            +L+EQ+R ++    Q  ++PVL+V+ D+R  +R L+  ++  +PVLS+ EL   +++Q L
Sbjct  626  ALVEQLREAFP--LQASPRPVLLVAQDLRSPLRSLLTDQFHHVPVLSFAELIPTVQVQVL  683

Query  700  GRI  702
            GRI
Sbjct  684  GRI  686

39) pYV0060 in NC_006153


> AY597281|10|G10|51103113|AAT96256.1|Pseudomonas_viridiflava_ME3.1b|+|9189..11279|hrcV|-|HrcV
Length=696

 Score =  358 bits (1346),  Expect = 4e-100, Method: Compositional matrix adjust.
 Identities = 286/663 (44%), Positives = 467/663 (71%), Gaps = 33/663 (4%)

Query  47   NMTISVVLLMIAIYINSPLQFSAFPAVLLVTTLFRLALSVSTTRMILLQADAGQIVYTfg  106
            N+ IS +L+++A+Y+  PL FS+FPAVLL+TT+FRL+LS++TTR+ILLQ DAG+IV +FG
Sbjct  50   NICISSLLIVLAMYLPRPLAFSTFPAVLLLTTMFRLSLSIATTRLILLQQDAGHIVEAFG  109

Query  107  nfvvggnlivgivifliitivqflvitKGSERVAEVSARFSLDAMPGKQMSIDGDMRAGV  166
            +FVVGGNL VG+VIFLI+TIV+FLVITKGSERVAEV+ARF+LDAMPGKQMSID+D+RA +
Sbjct  110  SFVVGGNLAVGLVIFLILTIVNFLVITKGSERVAEVAARFTLDAMPGKQMSIDSDLRANL  169

Query  167  IDVNEARERRATIEKESQMFGSMDGAMKFVKGDAIAGLIIIFVNILGGVTIGVTQKGLAA  226
            I+V EAR+RR  + KESQ+FG+MDGAMKFVKGDAIAGL+I+F+N++GG +IGV Q+G+ A
Sbjct  170  INVREARHRREQLSKESQLFGAMDGAMKFVKGDAIAGLVIVFINLIGGFSIGVLQNGMEA  229

Query  227  AEALQLYSILTVGDGMVSQVPALLIAITAGIIVTRVSSED---SSDLGSDIGKQVVAQPK  283
            ++A++LYS+LT+GDG+++Q+PALLI++TAG+I+TRV+++     +++G +I+ Q+ +QPK
Sbjct  230  GDAMHLYSVLTIGDGLIAQIPALLISLTAGMIITRVAPDSQTADANIGHEIAEQLTSQPK  289

Query  284  AMliggvllllfglipgfpTVTFLILALLVGC--GGYMLSRKQSRNDEANQDLQSILTSG  341
            A +++++ ++ FGLIPG PT+ F  +ALL  C  +G +  ++  R+ E +QD  SI +++
Sbjct  290  AWVFSSIGMMGFGLIPGMPTLVFACIALL--CLFSGLIQLWR-IRQKELHQD--SIGAAS  344

Query  342  SGAPAARTKAKTSGANKGRLGEQEAFAMTVPLLIDVDSSQQEALEAIALNDELVRVRRAL  401
             GAP    +         R+    A+      L++ +SS+Q + E   L + + + R +L
Sbjct  345  KGAPELNGREDIR-----RFNPSRAY------LLQCHSSHQGTAELDRLIQGIRQRRNTL  393

Query  402  YLDLGVPFPGIHLRFNEGMGEGEYIISLQEVPVARGELKAGYLLVRESVSQLELLGIPYE  461
              ++G+ +P++++ F +    +E+ + + EVP  R+ +  +    R +V + E+   + E
Sbjct  394  VHNFGLTLPSFDMEFADHFEPDEFRFCVYEVPFIRATFTNA----RLAVDHREIDEDAGE  449

Query  462  KGEHLLPDQEAFWVSVEYEERL--EKSQLEFFSHSQVLTWHLSHVLREYAEDFIGIQETR  519
             G   +  +E+ WV V+ ++ L  E  +    S   +L  ++S+ ++  + +FIG+QE++
Sbjct  450  PGR--VERDETRWVWVDIDDPLLKEEEHAGVSSLELILE-RMSRAFQATGPQFIGLQESK  506

Query  520  YLLEQMEGGYGELIKEVQRIVPLQRMTEILQRLVGEDISIRNMRSILEAMVEWGQKEKDV  579
             +L  +E+   EL +E+QR +PL R + +LQRL +E +S+R++R+I E+++E GQ E+D+
Sbjct  507  AILSWLESEQPELAQELQRTLPLARFAAVLQRLSAELVSLRSVRPIAETLIEQGQHERDL  566

Query  580  VQLTEYIRSSLKRYICYKYANGNNILPAYLFDQEVEEKIRSGVRQTSAGSYLALEPAVTE  639
              LT+ +R +LK  IC +  + +N L + L   E E  +R ++RQT   SY+ALEP + +
Sbjct  567  NALTDHVRIALKAQICHQHCE-ENTLHTWLVTPETEVLLRDSLRQTQNESYFALEPELGN  625

Query  640  SLLEQVRKTIGDLSQIQSKPVLIVSMDIRRYVRKLIESEYYGLPVLSYQELTQQINIQPL  699
            +L+EQ+R ++    Q  ++PVL+V+ D+R  +R L+  ++  +PVLS+ EL   +++Q L
Sbjct  626  ALVEQLREAFP--LQASPRPVLLVAQDLRSPLRSLLTDQFHHVPVLSFAELIPTVQVQVL  683

Query  700  GRI  702
            GRI
Sbjct  684  GRI  686

40) YPTS_4279 in NC_010635


> AY597281|10|G10|51103113|AAT96256.1|Pseudomonas_viridiflava_ME3.1b|+|9189..11279|hrcV|-|HrcV
Length=696

 Score =  358 bits (1346),  Expect = 4e-100, Method: Compositional matrix adjust.
 Identities = 286/663 (44%), Positives = 467/663 (71%), Gaps = 33/663 (4%)

Query  47   NMTISVVLLMIAIYINSPLQFSAFPAVLLVTTLFRLALSVSTTRMILLQADAGQIVYTfg  106
            N+ IS +L+++A+Y+  PL FS+FPAVLL+TT+FRL+LS++TTR+ILLQ DAG+IV +FG
Sbjct  50   NICISSLLIVLAMYLPRPLAFSTFPAVLLLTTMFRLSLSIATTRLILLQQDAGHIVEAFG  109

Query  107  nfvvggnlivgivifliitivqflvitKGSERVAEVSARFSLDAMPGKQMSIDGDMRAGV  166
            +FVVGGNL VG+VIFLI+TIV+FLVITKGSERVAEV+ARF+LDAMPGKQMSID+D+RA +
Sbjct  110  SFVVGGNLAVGLVIFLILTIVNFLVITKGSERVAEVAARFTLDAMPGKQMSIDSDLRANL  169

Query  167  IDVNEARERRATIEKESQMFGSMDGAMKFVKGDAIAGLIIIFVNILGGVTIGVTQKGLAA  226
            I+V EAR+RR  + KESQ+FG+MDGAMKFVKGDAIAGL+I+F+N++GG +IGV Q+G+ A
Sbjct  170  INVREARHRREQLSKESQLFGAMDGAMKFVKGDAIAGLVIVFINLIGGFSIGVLQNGMEA  229

Query  227  AEALQLYSILTVGDGMVSQVPALLIAITAGIIVTRVSSED---SSDLGSDIGKQVVAQPK  283
            ++A++LYS+LT+GDG+++Q+PALLI++TAG+I+TRV+++     +++G +I+ Q+ +QPK
Sbjct  230  GDAMHLYSVLTIGDGLIAQIPALLISLTAGMIITRVAPDSQTADANIGHEIAEQLTSQPK  289

Query  284  AMliggvllllfglipgfpTVTFLILALLVGC--GGYMLSRKQSRNDEANQDLQSILTSG  341
            A +++++ ++ FGLIPG PT+ F  +ALL  C  +G +  ++  R+ E +QD  SI +++
Sbjct  290  AWVFSSIGMMGFGLIPGMPTLVFACIALL--CLFSGLIQLWR-IRQKELHQD--SIGAAS  344

Query  342  SGAPAARTKAKTSGANKGRLGEQEAFAMTVPLLIDVDSSQQEALEAIALNDELVRVRRAL  401
             GAP    +         R+    A+      L++ +SS+Q + E   L + + + R +L
Sbjct  345  KGAPELNGREDIR-----RFNPSRAY------LLQCHSSHQGTAELDRLIQGIRQRRNTL  393

Query  402  YLDLGVPFPGIHLRFNEGMGEGEYIISLQEVPVARGELKAGYLLVRESVSQLELLGIPYE  461
              ++G+ +P++++ F +    +E+ + + EVP  R+ +  +    R +V + E+   + E
Sbjct  394  VHNFGLTLPSFDMEFADHFEPDEFRFCVYEVPFIRATFTNA----RLAVDHREIDEDAGE  449

Query  462  KGEHLLPDQEAFWVSVEYEERL--EKSQLEFFSHSQVLTWHLSHVLREYAEDFIGIQETR  519
             G   +  +E+ WV V+ ++ L  E  +    S   +L  ++S+ ++  + +FIG+QE++
Sbjct  450  PGR--VERDETRWVWVDIDDPLLKEEEHAGVSSLELILE-RMSRAFQATGPQFIGLQESK  506

Query  520  YLLEQMEGGYGELIKEVQRIVPLQRMTEILQRLVGEDISIRNMRSILEAMVEWGQKEKDV  579
             +L  +E+   EL +E+QR +PL R + +LQRL +E +S+R++R+I E+++E GQ E+D+
Sbjct  507  AILSWLESEQPELAQELQRTLPLARFAAVLQRLSAELVSLRSVRPIAETLIEQGQHERDL  566

Query  580  VQLTEYIRSSLKRYICYKYANGNNILPAYLFDQEVEEKIRSGVRQTSAGSYLALEPAVTE  639
              LT+ +R +LK  IC +  + +N L + L   E E  +R ++RQT   SY+ALEP + +
Sbjct  567  NALTDHVRIALKAQICHQHCE-ENTLHTWLVTPETEVLLRDSLRQTQNESYFALEPELGN  625

Query  640  SLLEQVRKTIGDLSQIQSKPVLIVSMDIRRYVRKLIESEYYGLPVLSYQELTQQINIQPL  699
            +L+EQ+R ++    Q  ++PVL+V+ D+R  +R L+  ++  +PVLS+ EL   +++Q L
Sbjct  626  ALVEQLREAFP--LQASPRPVLLVAQDLRSPLRSLLTDQFHHVPVLSFAELIPTVQVQVL  683

Query  700  GRI  702
            GRI
Sbjct  684  GRI  686

41) YE105_P0016 in NC_015475


> AY597281|10|G10|51103113|AAT96256.1|Pseudomonas_viridiflava_ME3.1b|+|9189..11279|hrcV|-|HrcV
Length=696

 Score =  358 bits (1343),  Expect = 8e-100, Method: Compositional matrix adjust.
 Identities = 285/663 (43%), Positives = 467/663 (71%), Gaps = 33/663 (4%)

Query  47   NMTISVVLLMIAIYINSPLQFSAFPAVLLVTTLFRLALSVSTTRMILLQADAGQIVYTfg  106
            N+ IS +L+++A+Y+  PL FS+FPAVLL+TT+FRL+LS++TTR+ILLQ DAG+IV +FG
Sbjct  50   NICISSLLIVLAMYLPRPLAFSTFPAVLLLTTMFRLSLSIATTRLILLQQDAGHIVEAFG  109

Query  107  nfvvggnlivgivifliitivqflvitKGSERVAEVSARFSLDAMPGKQMSIDGDMRAGV  166
            +FVVGGNL VG+VIFLI+TIV+FLVITKGSERVAEV+ARF+LDAMPGKQMSID+D+RA +
Sbjct  110  SFVVGGNLAVGLVIFLILTIVNFLVITKGSERVAEVAARFTLDAMPGKQMSIDSDLRANL  169

Query  167  IDVNEARERRATIEKESQMFGSMDGAMKFVKGDAIAGLIIIFVNILGGVTIGVTQKGLAA  226
            I+V EAR+RR  + KESQ+FG+MDGAMKFVKGDAIAGL+I+F+N++GG +IGV Q+G+ A
Sbjct  170  INVREARHRREQLSKESQLFGAMDGAMKFVKGDAIAGLVIVFINLIGGFSIGVLQNGMEA  229

Query  227  AEALQLYSILTVGDGMVSQVPALLIAITAGIIVTRVSSED---SSDLGSDIGKQVVAQPK  283
            ++A++LYS+LT+GDG+++Q+PALLI++TAG+I+TRV+++     +++G +I+ Q+ +QPK
Sbjct  230  GDAMHLYSVLTIGDGLIAQIPALLISLTAGMIITRVAPDSQTADANIGHEIAEQLTSQPK  289

Query  284  AMliggvllllfglipgfpTVTFLILALLVGC--GGYMLSRKQSRNDEANQDLQSILTSG  341
            A +++++ ++ FGLIPG PT+ F  +ALL  C  +G +  ++  R+ E +QD  SI +++
Sbjct  290  AWVFSSIGMMGFGLIPGMPTLVFACIALL--CLFSGLIQLWR-IRQKELHQD--SIGAAS  344

Query  342  SGAPAARTKAKTSGANKGRLGEQEAFAMTVPLLIDVDSSQQEALEAIALNDELVRVRRAL  401
             GAP    +         R+    A+      L++ +SS+Q + E   L + + + R +L
Sbjct  345  KGAPELNGREDIR-----RFNPSRAY------LLQCHSSHQGTAELDRLIQGIRQRRNTL  393

Query  402  YLDLGVPFPGIHLRFNEGMGEGEYLISLQEVPVARGELKAGYLLVRESVSQLELLGIPYE  461
              ++G+ +P++++ F +    +E+ + + EVP  R+ +  +    R +V + E+   + E
Sbjct  394  VHNFGLTLPSFDMEFADHFEPDEFRFCVYEVPFIRATFTNA----RLAVDHREIDEDAGE  449

Query  462  KGEHLLPDQETFWVSVEYEERL--EKSQLEFFSHSQVLTWHLSHVLREYAEDFIGIQETR  519
             G   +  +ET WV V+ ++ L  E  +    S   +L  ++S+ ++  + +FIG+QE++
Sbjct  450  PGR--VERDETRWVWVDIDDPLLKEEEHAGVSSLELILE-RMSRAFQATGPQFIGLQESK  506

Query  520  YLLEQMEGGYGELIKEVQRIVPLQRMTEILQRLVGEDISIRNMRSILEAMVEWGQKEKDV  579
             +L  +E+   EL +E+QR +PL R + +LQRL +E +S+R++R+I E+++E GQ E+D+
Sbjct  507  AILSWLESEQPELAQELQRTLPLARFAAVLQRLSAELVSLRSVRPIAETLIEQGQHERDL  566

Query  580  VQLTEYIRSSLKRYICYKYANGNNILPAYLFDQEVEEKIRSGVRQTSAGSYLALDPAVTE  639
              LT+ +R +LK  IC +  + +N L + L   E E  +R ++RQT   SY+AL+P + +
Sbjct  567  NALTDHVRIALKAQICHQHCE-ENTLHTWLVTPETEVLLRDSLRQTQNESYFALEPELGN  625

Query  640  SLLEQVRKTIGDLSQIQSKPVLIVSMDIRRYVRKLIESEYYGLPVLSYQELTQQINIQPL  699
            +L+EQ+R ++    Q  ++PVL+V+ D+R  +R L+  ++  +PVLS+ EL   +++Q L
Sbjct  626  ALVEQLREAFP--LQASPRPVLLVAQDLRSPLRSLLTDQFHHVPVLSFAELIPTVQVQVL  683

Query  700  GRV  702
            GR+
Sbjct  684  GRI  686

42) Y11_p0841 in NC_017565


> AY597281|10|G10|51103113|AAT96256.1|Pseudomonas_viridiflava_ME3.1b|+|9189..11279|hrcV|-|HrcV
Length=696

 Score =  358 bits (1343),  Expect = 8e-100, Method: Compositional matrix adjust.
 Identities = 285/663 (43%), Positives = 467/663 (71%), Gaps = 33/663 (4%)

Query  47   NMTISVVLLMIAIYINSPLQFSAFPAVLLVTTLFRLALSVSTTRMILLQADAGQIVYTfg  106
            N+ IS +L+++A+Y+  PL FS+FPAVLL+TT+FRL+LS++TTR+ILLQ DAG+IV +FG
Sbjct  50   NICISSLLIVLAMYLPRPLAFSTFPAVLLLTTMFRLSLSIATTRLILLQQDAGHIVEAFG  109

Query  107  nfvvggnlivgivifliitivqflvitKGSERVAEVSARFSLDAMPGKQMSIDGDMRAGV  166
            +FVVGGNL VG+VIFLI+TIV+FLVITKGSERVAEV+ARF+LDAMPGKQMSID+D+RA +
Sbjct  110  SFVVGGNLAVGLVIFLILTIVNFLVITKGSERVAEVAARFTLDAMPGKQMSIDSDLRANL  169

Query  167  IDVNEARERRATIEKESQMFGSMDGAMKFVKGDAIAGLIIIFVNILGGVTIGVTQKGLAA  226
            I+V EAR+RR  + KESQ+FG+MDGAMKFVKGDAIAGL+I+F+N++GG +IGV Q+G+ A
Sbjct  170  INVREARHRREQLSKESQLFGAMDGAMKFVKGDAIAGLVIVFINLIGGFSIGVLQNGMEA  229

Query  227  AEALQLYSILTVGDGMVSQVPALLIAITAGIIVTRVSSED---SSDLGSDIGKQVVAQPK  283
            ++A++LYS+LT+GDG+++Q+PALLI++TAG+I+TRV+++     +++G +I+ Q+ +QPK
Sbjct  230  GDAMHLYSVLTIGDGLIAQIPALLISLTAGMIITRVAPDSQTADANIGHEIAEQLTSQPK  289

Query  284  AMliggvllllfglipgfpTVTFLILALLVGC--GGYMLSRKQSRNDEANQDLQSILTSG  341
            A +++++ ++ FGLIPG PT+ F  +ALL  C  +G +  ++  R+ E +QD  SI +++
Sbjct  290  AWVFSSIGMMGFGLIPGMPTLVFACIALL--CLFSGLIQLWR-IRQKELHQD--SIGAAS  344

Query  342  SGAPAARTKAKTSGANKGRLGEQEAFAMTVPLLIDVDSSQQEALEAIALNDELVRVRRAL  401
             GAP    +         R+    A+      L++ +SS+Q + E   L + + + R +L
Sbjct  345  KGAPELNGREDIR-----RFNPSRAY------LLQCHSSHQGTAELDRLIQGIRQRRNTL  393

Query  402  YLDLGVPFPGIHLRFNEGMGEGEYLISLQEVPVARGELKAGYLLVRESVSQLELLGIPYE  461
              ++G+ +P++++ F +    +E+ + + EVP  R+ +  +    R +V + E+   + E
Sbjct  394  VHNFGLTLPSFDMEFADHFEPDEFRFCVYEVPFIRATFTNA----RLAVDHREIDEDAGE  449

Query  462  KGEHLLPDQETFWVSVEYEERL--EKSQLEFFSHSQVLTWHLSHVLREYAEDFIGIQETR  519
             G   +  +ET WV V+ ++ L  E  +    S   +L  ++S+ ++  + +FIG+QE++
Sbjct  450  PGR--VERDETRWVWVDIDDPLLKEEEHAGVSSLELILE-RMSRAFQATGPQFIGLQESK  506

Query  520  YLLEQMEGGYGELIKEVQRIVPLQRMTEILQRLVGEDISIRNMRSILEAMVEWGQKEKDV  579
             +L  +E+   EL +E+QR +PL R + +LQRL +E +S+R++R+I E+++E GQ E+D+
Sbjct  507  AILSWLESEQPELAQELQRTLPLARFAAVLQRLSAELVSLRSVRPIAETLIEQGQHERDL  566

Query  580  VQLTEYIRSSLKRYICYKYANGNNILPAYLFDQEVEEKIRSGVRQTSAGSYLALDPAVTE  639
              LT+ +R +LK  IC +  + +N L + L   E E  +R ++RQT   SY+AL+P + +
Sbjct  567  NALTDHVRIALKAQICHQHCE-ENTLHTWLVTPETEVLLRDSLRQTQNESYFALEPELGN  625

Query  640  SLLEQVRKTIGDLSQIQSKPVLIVSMDIRRYVRKLIESEYYGLPVLSYQELTQQINIQPL  699
            +L+EQ+R ++    Q  ++PVL+V+ D+R  +R L+  ++  +PVLS+ EL   +++Q L
Sbjct  626  ALVEQLREAFP--LQASPRPVLLVAQDLRSPLRSLLTDQFHHVPVLSFAELIPTVQVQVL  683

Query  700  GRV  702
            GR+
Sbjct  684  GRI  686

43) bcrD in NC_019382


> AY597281|10|G10|51103113|AAT96256.1|Pseudomonas_viridiflava_ME3.1b|+|9189..11279|hrcV|-|HrcV
Length=696

 Score =  357 bits (1341),  Expect = 1e-99, Method: Compositional matrix adjust.
 Identities = 321/704 (46%), Positives = 499/704 (71%), Gaps = 24/704 (3%)

Query  4    KKSILRLQRAVALAT-SRNDivlavlivaivFMMILPLPTTLVDVLIGANMTLSAVLLMV  62
             ++I++L   +ALA  +R +IV AV+++AIVFMMILPLPT LVDVLI+ N+ +S++L+++
Sbjct  1    MNGIIHLLNRLALAVMGRTEIVGAVMVMAIVFMMILPLPTWLVDVLIALNICISSLLIVL  60

Query  63   AMYlpsplafssfpsvllvTTLFRLGISIATTRLILLQGDAGHIIETfgnfvvggnlivg  122
            AMYLP PLAFS+FP+VLL+TT+FRL++SIATTRLILLQ DAGHI+E+FG+FVVGGNL VG
Sbjct  61   AMYLPRPLAFSTFPAVLLLTTMFRLSLSIATTRLILLQQDAGHIVEAFGSFVVGGNLAVG  120

Query  123  lvvflilTIVQFVVITKGAERVAEVAARFSLDAMPGKQMSIDADLRAGTIDMDEARRRRR  182
            LV+FLILTIV+F+VITKG+ERVAEVAARF+LDAMPGKQMSID+DLRA  I++ EAR+RR 
Sbjct  121  LVIFLILTIVNFLVITKGSERVAEVAARFTLDAMPGKQMSIDSDLRANLINVREARHRRE  180

Query  183  TVEKESQLYGAMDGAMKFVKGDAIAGLIIvavnllggmlvgvlqrglSAGEAVQTYAILT  242
             + KESQL+GAMDGAMKFVKGDAIAGL+IV +NL+GG  +GVLQ G+ AG+A++ Y++LT
Sbjct  181  QLSKESQLFGAMDGAMKFVKGDAIAGLVIVFINLIGGFSIGVLQNGMEAGDAMHLYSVLT  240

Query  243  IGDGLIAQIPALFIAICAGIIVTRV--QTGDGPSNVGTDIGAQVLAQPRALVIAGAISAG  300
            IGDGLIAQIPAL+I++ AG+I+TRV  ++  + +N+G +I+ Q+ +QP+A V+++    G
Sbjct  241  IGDGLIAQIPALLISLTAGMIITRVAPDSQTADANIGHEIAEQLTSQPKAWVFSSIGMMG  300

Query  301  LGLIPGMPTLVFFALAAVVGTIGFV-LLRASQRPPEGAGPALAGMAADGQPRTRAPADGQ  359
            +GLIPGMPTLVF  +A +    G++ L R  Q+  +  +    G A+ G P   +  D +
Sbjct  301  FGLIPGMPTLVFACIALLCLFSGLIQLWRIRQKELHQDS---IGAASKGAPELNGREDIR  357

Query  360  AEFAPTVPLIIDVAARLQPRFEPATLTDDLLQIRRALYFDLGVPFPGIQLRFTEALAANT  419
              F P+ + +++  +  Q   E   L +++ Q R +L  ++G+ +P++++ F++ + ++ 
Sbjct  358  -RFNPSRAYLLQCHSSHQGTAELDRLIQGIRQRRNTLVHNFGLTLPSFDMEFADHFEPDE  416

Query  420  YTIVLSEIPVAQGMLRDDAVLV--RDTEQNLQALRIAYETGAAFLPDTPTIWV--AASLT  475
            + + + E+P  ++ + +  + V  R+ +++      A E G     +T  +WV    +L 
Sbjct  417  FRFCVYEVPFIRATFTNARLAVDHREIDED------AGEPGRVERDETRWVWVDIDDPLL  470

Query  476  GALRDAGIPYLGISQILTWHLAYVLKKYSADFIGIQETRFLLSAMEERFPDLVKECLRVM  535
                +AG++ L +  IL  +++  ++  +++FIG+QE++ +LS +E   P+L +E  R +
Sbjct  471  KEEEHAGVSSLEL--ILE-RMSRAFQATGPQFIGLQESKAILSWLESEQPELAQELQRTL  527

Query  536  PVQKIAEILQRLVSEEVSIRNLRAVLEALVEWGQKEKDTVLLTEYVRIALKRYISYKYTS  595
            P+ ++A +LQRL +E VS+R++R++ E+L+E GQ E+D   LT+ VRIALK  I  +   
Sbjct  528  PLARFAAVLQRLSAELVSLRSVRPIAETLIEQGQHERDLNALTDHVRIALKAQICHQH-C  586

Query  596  GHNILPAYLLAPKVEETVRAAIRQTAAGSYLALDPDTTRRLVEHIRQCVGDLAAGASRPV  655
             +N L + L++P  E  +R ++RQT   SY+AL+P+    LVE++R+       +++RPV
Sbjct  587  EENTLHTWLVTPETEVLLRDSLRQTQNESYFALEPELGNALVEQLREAFP--LQASPRPV  644

Query  656  LLTSMDIRRYTRKMIEADLYALPVLSYQELTPEINVQPLGRVDL  699
            LL + D+R   R ++  ++  +PVLS+ EL P ++VQ LGR+DL
Sbjct  645  LLVAQDLRSPLRSLLTDQFHHVPVLSFAELIPTVQVQVLGRIDL  688

44) bcrD in NC_018828


> AY597281|10|G10|51103113|AAT96256.1|Pseudomonas_viridiflava_ME3.1b|+|9189..11279|hrcV|-|HrcV
Length=696

 Score =  357 bits (1340),  Expect = 1e-99, Method: Compositional matrix adjust.
 Identities = 321/704 (46%), Positives = 499/704 (71%), Gaps = 24/704 (3%)

Query  4    KKSILRLQRAVALAT-SRNDivlavlivaivFMMILPLPTTLVDVLIGANMTLSAVLLMV  62
             ++I++L   +ALA  +R +IV AV+++AIVFMMILPLPT LVDVLI+ N+ +S++L+++
Sbjct  1    MNGIIHLLNRLALAVMGRTEIVGAVMVMAIVFMMILPLPTWLVDVLIALNICISSLLIVL  60

Query  63   AMYlpsplafssfpsvllvTTLFRLGISIATTRLILLQGDAGHIIETfgnfvvggnlivg  122
            AMYLP PLAFS+FP+VLL+TT+FRL++SIATTRLILLQ DAGHI+E+FG+FVVGGNL VG
Sbjct  61   AMYLPRPLAFSTFPAVLLLTTMFRLSLSIATTRLILLQQDAGHIVEAFGSFVVGGNLAVG  120

Query  123  lvvflilTIVQFVVITKGAERVAEVAARFSLDAMPGKQMSIDADLRAGTIDMDEARRRRR  182
            LV+FLILTIV+F+VITKG+ERVAEVAARF+LDAMPGKQMSID+DLRA  I++ EAR+RR 
Sbjct  121  LVIFLILTIVNFLVITKGSERVAEVAARFTLDAMPGKQMSIDSDLRANLINVREARHRRE  180

Query  183  TVEKESQLYGAMDGAMKFVKGDAIAGLIIvavnllggmlvgvlqrglSAGEAVQTYAILT  242
             + KESQL+GAMDGAMKFVKGDAIAGL+IV +NL+GG  +GVLQ G+ AG+A++ Y++LT
Sbjct  181  QLSKESQLFGAMDGAMKFVKGDAIAGLVIVFINLIGGFSIGVLQNGMEAGDAMHLYSVLT  240

Query  243  IGDGLIAQIPALFIAICAGIIVTRV--QTGDGPSNVGTDIGAQVLAQPRALVIAGAISAG  300
            IGDGLIAQIPAL+I++ AG+I+TRV  ++  + +N+G +I+ Q+ +QP+A V+++    G
Sbjct  241  IGDGLIAQIPALLISLTAGMIITRVAPDSQTADANIGHEIAEQLTSQPKAWVFSSIGMMG  300

Query  301  LGLIPGMPTLVFFALAAVVGTIGFV-LLRASQRPPEGAGPALAGMAADGQPRTRAPADGQ  359
            +GLIPGMPTLVF  +A +    G++ L R  Q+  +  +    G A+ G P   +  D +
Sbjct  301  FGLIPGMPTLVFACIALLCLFSGLIQLWRIRQKELHQDS---IGAASKGAPELNGREDIR  357

Query  360  AEFAPTVPLIIDVAARLQPRFEPATLTDDLLQIRRALYFDLGVPFPGIQLRFTEALAANT  419
              F P+ + +++  +  Q   E   L +++ Q R +L  ++G+ +P++++ F++ + ++ 
Sbjct  358  -RFNPSRAYLLQCHSSHQGTAELDRLIQGIRQRRNTLVHNFGLTLPSFDMEFADHFEPDE  416

Query  420  YTIVLSEIPVAQGMLRDDAVLV--RDTEQNLQALRIAYETGAAFLPDTPTIWV--TASLT  475
            + + + E+P  ++ + +  + V  R+ +++      A E G     +T  +WV    +L 
Sbjct  417  FRFCVYEVPFIRATFTNARLAVDHREIDED------AGEPGRVERDETRWVWVDIDDPLL  470

Query  476  GALRDAGIPYLGISQILTWHLAYVLKKYSADFIGIQETRFLLSAMEERFPDLVKECLRVM  535
                +AG++ L +  IL  +++  ++  +++FIG+QE++ +LS +E   P+L +E  R +
Sbjct  471  KEEEHAGVSSLEL--ILE-RMSRAFQATGPQFIGLQESKAILSWLESEQPELAQELQRTL  527

Query  536  PVQKIAEILQRLVSEEVSIRNLRAVLEALVEWGQKEKDTVLLTEYVRIALKRYISYKYTS  595
            P+ ++A +LQRL +E VS+R++R++ E+L+E GQ E+D   LT+ VRIALK  I  +   
Sbjct  528  PLARFAAVLQRLSAELVSLRSVRPIAETLIEQGQHERDLNALTDHVRIALKAQICHQH-C  586

Query  596  GHNILPAYLLAPKVEETVRAAIRQTAAGSYLALDPDTTRRLVEHIRQCVGDLAAGASRPV  655
             +N L + L++P  E  +R ++RQT   SY+AL+P+    LVE++R+       +++RPV
Sbjct  587  EENTLHTWLVTPETEVLLRDSLRQTQNESYFALEPELGNALVEQLREAFP--LQASPRPV  644

Query  656  LLTSMDIRRYTRKMIEADLYALPVLSYQELTPEINVQPLGRVDL  699
            LL + D+R   R ++  ++  +PVLS+ EL P ++VQ LGR+DL
Sbjct  645  LLVAQDLRSPLRSLLTDQFHHVPVLSFAELIPTVQVQVLGRIDL  688

45) bcrD in NC_002927


> AY597281|10|G10|51103113|AAT96256.1|Pseudomonas_viridiflava_ME3.1b|+|9189..11279|hrcV|-|HrcV
Length=696

 Score =  356 bits (1339),  Expect = 2e-99, Method: Compositional matrix adjust.
 Identities = 319/704 (46%), Positives = 499/704 (71%), Gaps = 24/704 (3%)

Query  4    KKSILRLQRAVALAT-SRNDivlavlivaivFMMILPLPTTLVDVLIGANMTLSAVLLMV  62
             ++I++L   +ALA  +R +IV AV+++AIVFMMILPLPT LVDVLI+ N+ +S++L+++
Sbjct  1    MNGIIHLLNRLALAVMGRTEIVGAVMVMAIVFMMILPLPTWLVDVLIALNICISSLLIVL  60

Query  63   AMYlpsplafssfpsvllvTTLFRLGISIATTRLILLQGDAGHIIETfgnfvvggnlivg  122
            AMYLP PLAFS+FP+VLL+TT+FRL++SIATTRLILLQ DAGHI+E+FG+FVVGGNL VG
Sbjct  61   AMYLPRPLAFSTFPAVLLLTTMFRLSLSIATTRLILLQQDAGHIVEAFGSFVVGGNLAVG  120

Query  123  lvvflilTIVQFVVITKGAERVAEVAARFSLDAMPGKQMSIDADLRAGTIDMDEARRRRR  182
            LV+FLILTIV+F+VITKG+ERVAEVAARF+LDAMPGKQMSID+DLRA  I++ EAR+RR 
Sbjct  121  LVIFLILTIVNFLVITKGSERVAEVAARFTLDAMPGKQMSIDSDLRANLINVREARHRRE  180

Query  183  TVEKESQLYGAMDGAMKFVKGDAIAGLIIvavnllggmlvgvlqrglSAGEAVQTYAILT  242
             + KESQL+GAMDGAMKFVKGDAIAGL+IV +NL+GG  +GVLQ G+ AG+A++ Y++LT
Sbjct  181  QLSKESQLFGAMDGAMKFVKGDAIAGLVIVFINLIGGFSIGVLQNGMEAGDAMHLYSVLT  240

Query  243  IGDGLIAQIPALFIAICAGIIVTRV--QTGDGPSNVGTDIGAQVLAQPRALVIAGAISAG  300
            IGDGLIAQIPAL+I++ AG+I+TRV  ++  + +N+G +I+ Q+ +QP+A V+++    G
Sbjct  241  IGDGLIAQIPALLISLTAGMIITRVAPDSQTADANIGHEIAEQLTSQPKAWVFSSIGMMG  300

Query  301  LGLIPGMPTLVFFALAAVVGTIGFV-LLRASQRPPEGAGPALAGMAADGLPRTRAPADGQ  359
            +GLIPGMPTLVF  +A +    G++ L R  Q+  +  + + A+ +A  L       ++ 
Sbjct  301  FGLIPGMPTLVFACIALLCLFSGLIQLWRIRQKELHQDSIGAASKGAPEL----NGREDI  356

Query  360  AEFAPTVPLIIDVAARLQPRFEPATLTDDLLQIRRALYFDLGVPFPGIQLRFTEALAANT  419
              F P+ + +++  +  Q   E   L +++ Q R +L  ++G+ +P++++ F++ + ++ 
Sbjct  357  RRFNPSRAYLLQCHSSHQGTAELDRLIQGIRQRRNTLVHNFGLTLPSFDMEFADHFEPDE  416

Query  420  YTIVLSEIPVAQGMLRDDAVLV--RDTEQNLQALRIAYETGAAFLPDTPTIWV--AASLT  475
            + + + E+P  ++ + +  + V  R+ +++      A E G     +T  +WV    +L 
Sbjct  417  FRFCVYEVPFIRATFTNARLAVDHREIDED------AGEPGRVERDETRWVWVDIDDPLL  470

Query  476  GALRDAGIPYLGISQILTWHLAYVLKKYSADFIGIQETRFLLSAMEERFPDLVKECLRVM  535
                +AG++ L +  IL  +++  ++  +++FIG+QE++ +LS +E   P+L +E  R +
Sbjct  471  KEEEHAGVSSLEL--ILE-RMSRAFQATGPQFIGLQESKAILSWLESEQPELAQELQRTL  527

Query  536  PVQKIAEILQRLVSEEVSIRNLRAVLEALVEWGQKEKDTVLLTEYVRIALKRYISYKYTS  595
            P+ ++A +LQRL +E VS+R++R++ E+L+E GQ E+D   LT+ VRIALK  I  +   
Sbjct  528  PLARFAAVLQRLSAELVSLRSVRPIAETLIEQGQHERDLNALTDHVRIALKAQICHQH-C  586

Query  596  GHNILPAYLLAPKVEETVRAAIRQTAAGSYLALDPDTTRRLVEHIRQCVGDLAAGASRPV  655
             +N L + L++P  E  +R ++RQT   SY+AL+P+    LVE++R+       +++RPV
Sbjct  587  EENTLHTWLVTPETEVLLRDSLRQTQNESYFALEPELGNALVEQLREAFP--LQASPRPV  644

Query  656  LLTSMDIRRYTRKMIEADLYALPVLSYQELTPEINVQPLGRVDL  699
            LL + D+R   R ++  ++  +PVLS+ EL P ++VQ LGR+DL
Sbjct  645  LLVAQDLRSPLRSLLTDQFHHVPVLSFAELIPTVQVQVLGRIDL  688

46) bcrD in NC_018518


> AY597281|10|G10|51103113|AAT96256.1|Pseudomonas_viridiflava_ME3.1b|+|9189..11279|hrcV|-|HrcV
Length=696

 Score =  356 bits (1337),  Expect = 2e-99, Method: Compositional matrix adjust.
 Identities = 320/703 (46%), Positives = 497/703 (71%), Gaps = 22/703 (3%)

Query  4    KKSIRRLQRAVALAT-SRNDivlavlivaivFMMILPLPTTLVDVLIGANMTLSAVLLMV  62
             ++I +L   +ALA  +R +IV AV+++AIVFMMILPLPT LVDVLI+ N+ +S++L+++
Sbjct  1    MNGIIHLLNRLALAVMGRTEIVGAVMVMAIVFMMILPLPTWLVDVLIALNICISSLLIVL  60

Query  63   AMYlpsplafssfpsvllvTTLFRLGISIATTRLILLQGDAGHIIETfgnfvvggnlivg  122
            AMYLP PLAFS+FP+VLL+TT+FRL++SIATTRLILLQ DAGHI+E+FG+FVVGGNL VG
Sbjct  61   AMYLPRPLAFSTFPAVLLLTTMFRLSLSIATTRLILLQQDAGHIVEAFGSFVVGGNLAVG  120

Query  123  lvvflilTIVQFVVITKGAERVAEVAARFSLDAMPGKQMSIDADLRAGTIDMDEARRRRR  182
            LV+FLILTIV+F+VITKG+ERVAEVAARF+LDAMPGKQMSID+DLRA  I++ EAR+RR 
Sbjct  121  LVIFLILTIVNFLVITKGSERVAEVAARFTLDAMPGKQMSIDSDLRANLINVREARHRRE  180

Query  183  TVEKESQLYGAMDGAMKFVKGDAIAGLIIvavnllggmlvgvlqrglSAGEAVQTYAILT  242
             + KESQL+GAMDGAMKFVKGDAIAGL+IV +NL+GG  +GVLQ G+ AG+A++ Y++LT
Sbjct  181  QLSKESQLFGAMDGAMKFVKGDAIAGLVIVFINLIGGFSIGVLQNGMEAGDAMHLYSVLT  240

Query  243  IGDGLIAQIPALFIAICAGIIVTRV--QTGDGPSNVGTDIGAQVLAQPRALVIAGAISAG  300
            IGDGLIAQIPAL+I++ AG+I+TRV  ++  + +N+G +I+ Q+ +QP+A V+++    G
Sbjct  241  IGDGLIAQIPALLISLTAGMIITRVAPDSQTADANIGHEIAEQLTSQPKAWVFSSIGMMG  300

Query  301  LGLIPGMPTLVFFALAAAVGTIGFVLLRASQRPPEGAEPALAGMAADGQPRTRAPADGQA  360
            +GLIPGMPTLVF  +A      G++ L+  ++     ++   G A+ G P   +  D + 
Sbjct  301  FGLIPGMPTLVFACIALLCLFSGLIQLWRIRQKELHQDS--IGAASKGAPELNGREDIR-  357

Query  361  EFAPTVPLIIDVAARLQPRFEPATLTDDLLQIRRALYFDLGVPFPGIQLRFTEALAANTY  420
             F P+ + +++  +  Q   E   L +++ Q R +L  ++G+ +P++++ F++ + ++ +
Sbjct  358  RFNPSRAYLLQCHSSHQGTAELDRLIQGIRQRRNTLVHNFGLTLPSFDMEFADHFEPDEF  417

Query  421  TIVLSEIPVAQGMLRDDAVLV--RDTEQNLQALRIAYETGAAFLPDTPTIWV--AASLTG  476
             + + E+P  ++ + +  + V  R+ +++      A E G     +T  +WV    +L  
Sbjct  418  RFCVYEVPFIRATFTNARLAVDHREIDED------AGEPGRVERDETRWVWVDIDDPLLK  471

Query  477  ALRDAGIPYLGISQILTWHLAYVLKKYSTDFIGIQETRFLLSAMEERFPDLVKECLRVMP  536
               +AG++ L +  IL  +++  ++  + +FIG+QE++ +LS +E   P+L +E  R +P
Sbjct  472  EEEHAGVSSLEL--ILE-RMSRAFQATGPQFIGLQESKAILSWLESEQPELAQELQRTLP  528

Query  537  VQKIAEILQRLVSEEVSIRNLRAVLEALVEWGQKEKDTVLLTEYVRIALKRYISHKYTSG  596
            + ++A +LQRL +E VS+R++R++ E+L+E GQ E+D   LT+ VRIALK  I H+    
Sbjct  529  LARFAAVLQRLSAELVSLRSVRPIAETLIEQGQHERDLNALTDHVRIALKAQICHQH-CE  587

Query  597  HNILPAYLLAPKVEETVRAAIRQTAAGSYLALDPDTTRRLVEHIRQCVGDLAAGASRPVL  656
            +N L + L++P  E  +R ++RQT   SY+AL+P+    LVE++R+       +++RPVL
Sbjct  588  ENTLHTWLVTPETEVLLRDSLRQTQNESYFALEPELGNALVEQLREAFP--LQASPRPVL  645

Query  657  LTSMDIRRYTRKMIEADLYALPVLSYQELTPEINVQPLGRVDL  699
            L + D+R   R ++  ++  +PVLS+ EL P ++VQ LGR+DL
Sbjct  646  LVAQDLRSPLRSLLTDQFHHVPVLSFAELIPTVQVQVLGRIDL  688

47) bcrD in NC_017223


> AY597281|10|G10|51103113|AAT96256.1|Pseudomonas_viridiflava_ME3.1b|+|9189..11279|hrcV|-|HrcV
Length=696

 Score =  356 bits (1339),  Expect = 2e-99, Method: Compositional matrix adjust.
 Identities = 320/703 (46%), Positives = 498/703 (71%), Gaps = 22/703 (3%)

Query  4    KKSIRRLQRAVALAT-SRNDivlavlivaivFMMILPLPTTLVDVLIGANMTLSAVLLMV  62
             ++I +L   +ALA  +R +IV AV+++AIVFMMILPLPT LVDVLI+ N+ +S++L+++
Sbjct  1    MNGIIHLLNRLALAVMGRTEIVGAVMVMAIVFMMILPLPTWLVDVLIALNICISSLLIVL  60

Query  63   AMYlpsplafssfpsvllvTTLFRLGISIATTRLILLQGDAGHIIETfgnfvvggnlivg  122
            AMYLP PLAFS+FP+VLL+TT+FRL++SIATTRLILLQ DAGHI+E+FG+FVVGGNL VG
Sbjct  61   AMYLPRPLAFSTFPAVLLLTTMFRLSLSIATTRLILLQQDAGHIVEAFGSFVVGGNLAVG  120

Query  123  lvvflilTIVQFVVITKGAERVAEVAARFSLDAMPGKQMSIDADLRAGTIDMDEARRRRR  182
            LV+FLILTIV+F+VITKG+ERVAEVAARF+LDAMPGKQMSID+DLRA  I++ EAR+RR 
Sbjct  121  LVIFLILTIVNFLVITKGSERVAEVAARFTLDAMPGKQMSIDSDLRANLINVREARHRRE  180

Query  183  TVEKESQLYGAMDGAMKFVKGDAIAGLIIvavnllggmlvgvlqrglSAGEAVQTYAILT  242
             + KESQL+GAMDGAMKFVKGDAIAGL+IV +NL+GG  +GVLQ G+ AG+A++ Y++LT
Sbjct  181  QLSKESQLFGAMDGAMKFVKGDAIAGLVIVFINLIGGFSIGVLQNGMEAGDAMHLYSVLT  240

Query  243  IGDGLIAQIPALFIAICAGIIVTRV--QTGDGPSNVGTDIGAQVLAQPRALVIAGAISAG  300
            IGDGLIAQIPAL+I++ AG+I+TRV  ++  + +N+G +I+ Q+ +QP+A V+++    G
Sbjct  241  IGDGLIAQIPALLISLTAGMIITRVAPDSQTADANIGHEIAEQLTSQPKAWVFSSIGMMG  300

Query  301  LGLIPGMPTLVFFALAAAVGTIGFVLLRASQRPPEGAEPALAGMAADGQPRTRAPADGQA  360
            +GLIPGMPTLVF  +A      G++ L+  ++     ++   G A+ G P   +  D + 
Sbjct  301  FGLIPGMPTLVFACIALLCLFSGLIQLWRIRQKELHQDS--IGAASKGAPELNGREDIR-  357

Query  361  EFAPTVPLIIDVAARLQPRFEPATLTDDLLQIRRALYFDLGVPFPGIQLRFTEALAANTY  420
             F P+ + +++  +  Q   E   L +++ Q R +L  ++G+ +P++++ F++ + ++ +
Sbjct  358  RFNPSRAYLLQCHSSHQGTAELDRLIQGIRQRRNTLVHNFGLTLPSFDMEFADHFEPDEF  417

Query  421  TIVLSEIPVAQGMLRDDAVLV--RDTEQNLQALRIAYETGAAFLPDTPTIWV--AASLTG  476
             + + E+P  ++ + +  + V  R+ +++      A E G     +T  +WV    +L  
Sbjct  418  RFCVYEVPFIRATFTNARLAVDHREIDED------AGEPGRVERDETRWVWVDIDDPLLK  471

Query  477  ALRDAGIPYLGISQILTWHLAYVLKKYSADFIGIQETRFLLSAMEERFPDLVKECLRVMP  536
               +AG++ L +  IL  +++  ++  +++FIG+QE++ +LS +E   P+L +E  R +P
Sbjct  472  EEEHAGVSSLEL--ILE-RMSRAFQATGPQFIGLQESKAILSWLESEQPELAQELQRTLP  528

Query  537  VQKIAEILQRLVSEEVSIRNLRAVLEALVEWGQKEKDTVLLTEYVRIALKRYISHKYTSG  596
            + ++A +LQRL +E VS+R++R++ E+L+E GQ E+D   LT+ VRIALK  I H+    
Sbjct  529  LARFAAVLQRLSAELVSLRSVRPIAETLIEQGQHERDLNALTDHVRIALKAQICHQH-CE  587

Query  597  HNILPAYLLAPKVEETVRAAIRQTAAGSYLALDPDTTRRLVEHIRQCVGDLAAGASRPVL  656
            +N L + L++P  E  +R ++RQT   SY+AL+P+    LVE++R+       +++RPVL
Sbjct  588  ENTLHTWLVTPETEVLLRDSLRQTQNESYFALEPELGNALVEQLREAFP--LQASPRPVL  645

Query  657  LTSMDIRRYTRKMIEADLYALPVLSYQELTPEINVQPLGRVDL  699
            L + D+R   R ++  ++  +PVLS+ EL P ++VQ LGR+DL
Sbjct  646  LVAQDLRSPLRSLLTDQFHHVPVLSFAELIPTVQVQVLGRIDL  688

48) bcrD in NC_002929


> AY597281|10|G10|51103113|AAT96256.1|Pseudomonas_viridiflava_ME3.1b|+|9189..11279|hrcV|-|HrcV
Length=696

 Score =  356 bits (1339),  Expect = 2e-99, Method: Compositional matrix adjust.
 Identities = 320/703 (46%), Positives = 498/703 (71%), Gaps = 22/703 (3%)

Query  4    KKSIRRLQRAVALAT-SRNDivlavlivaivFMMILPLPTTLVDVLIGANMTLSAVLLMV  62
             ++I +L   +ALA  +R +IV AV+++AIVFMMILPLPT LVDVLI+ N+ +S++L+++
Sbjct  1    MNGIIHLLNRLALAVMGRTEIVGAVMVMAIVFMMILPLPTWLVDVLIALNICISSLLIVL  60

Query  63   AMYlpsplafssfpsvllvTTLFRLGISIATTRLILLQGDAGHIIETfgnfvvggnlivg  122
            AMYLP PLAFS+FP+VLL+TT+FRL++SIATTRLILLQ DAGHI+E+FG+FVVGGNL VG
Sbjct  61   AMYLPRPLAFSTFPAVLLLTTMFRLSLSIATTRLILLQQDAGHIVEAFGSFVVGGNLAVG  120

Query  123  lvvflilTIVQFVVITKGAERVAEVAARFSLDAMPGKQMSIDADLRAGTIDMDEARRRRR  182
            LV+FLILTIV+F+VITKG+ERVAEVAARF+LDAMPGKQMSID+DLRA  I++ EAR+RR 
Sbjct  121  LVIFLILTIVNFLVITKGSERVAEVAARFTLDAMPGKQMSIDSDLRANLINVREARHRRE  180

Query  183  TVEKESQLYGAMDGAMKFVKGDAIAGLIIvavnllggmlvgvlqrglSAGEAVQTYAILT  242
             + KESQL+GAMDGAMKFVKGDAIAGL+IV +NL+GG  +GVLQ G+ AG+A++ Y++LT
Sbjct  181  QLSKESQLFGAMDGAMKFVKGDAIAGLVIVFINLIGGFSIGVLQNGMEAGDAMHLYSVLT  240

Query  243  IGDGLIAQIPALFIAICAGIIVTRV--QTGDGPSNVGTDIGAQVLAQPRALVIAGAISAG  300
            IGDGLIAQIPAL+I++ AG+I+TRV  ++  + +N+G +I+ Q+ +QP+A V+++    G
Sbjct  241  IGDGLIAQIPALLISLTAGMIITRVAPDSQTADANIGHEIAEQLTSQPKAWVFSSIGMMG  300

Query  301  LGLIPGMPTLVFFALAAAVGTIGFVLLRASQRPPEGAEPALAGMAADGQPRTRAPADGQA  360
            +GLIPGMPTLVF  +A      G++ L+  ++     ++   G A+ G P   +  D + 
Sbjct  301  FGLIPGMPTLVFACIALLCLFSGLIQLWRIRQKELHQDS--IGAASKGAPELNGREDIR-  357

Query  361  EFAPTVPLIIDVAARLQPRFEPATLTDDLLQIRRALYFDLGVPFPGIQLRFTEALAANTY  420
             F P+ + +++  +  Q   E   L +++ Q R +L  ++G+ +P++++ F++ + ++ +
Sbjct  358  RFNPSRAYLLQCHSSHQGTAELDRLIQGIRQRRNTLVHNFGLTLPSFDMEFADHFEPDEF  417

Query  421  TIVLSEIPVAQGMLRDDAVLV--RDTEQNLQALRIAYETGAAFLPDTPTIWV--AASLTG  476
             + + E+P  ++ + +  + V  R+ +++      A E G     +T  +WV    +L  
Sbjct  418  RFCVYEVPFIRATFTNARLAVDHREIDED------AGEPGRVERDETRWVWVDIDDPLLK  471

Query  477  ALRDAGIPYLGISQILTWHLAYVLKKYSADFIGIQETRFLLSAMEERFPDLVKECLRVMP  536
               +AG++ L +  IL  +++  ++  +++FIG+QE++ +LS +E   P+L +E  R +P
Sbjct  472  EEEHAGVSSLEL--ILE-RMSRAFQATGPQFIGLQESKAILSWLESEQPELAQELQRTLP  528

Query  537  VQKIAEILQRLVSEEVSIRNLRAVLEALVEWGQKEKDTVLLTEYVRIALKRYISHKYTSG  596
            + ++A +LQRL +E VS+R++R++ E+L+E GQ E+D   LT+ VRIALK  I H+    
Sbjct  529  LARFAAVLQRLSAELVSLRSVRPIAETLIEQGQHERDLNALTDHVRIALKAQICHQH-CE  587

Query  597  HNILPAYLLAPKVEETVRAAIRQTAAGSYLALDPDTTRRLVEHIRQCVGDLAAGASRPVL  656
            +N L + L++P  E  +R ++RQT   SY+AL+P+    LVE++R+       +++RPVL
Sbjct  588  ENTLHTWLVTPETEVLLRDSLRQTQNESYFALEPELGNALVEQLREAFP--LQASPRPVL  645

Query  657  LTSMDIRRYTRKMIEADLYALPVLSYQELTPEINVQPLGRVDL  699
            L + D+R   R ++  ++  +PVLS+ EL P ++VQ LGR+DL
Sbjct  646  LVAQDLRSPLRSLLTDQFHHVPVLSFAELIPTVQVQVLGRIDL  688

49) lcrD in NC_008791


> AY597281|10|G10|51103113|AAT96256.1|Pseudomonas_viridiflava_ME3.1b|+|9189..11279|hrcV|-|HrcV
Length=696

 Score =  356 bits (1339),  Expect = 2e-99, Method: Compositional matrix adjust.
 Identities = 284/663 (43%), Positives = 467/663 (71%), Gaps = 33/663 (4%)

Query  47   NMTISVVLLMIAIYINSPLQFSAFPAVLLVTTLFRLALSVSTTRMILLQADAGQIVYTfg  106
            N+ IS +L+++A+Y+  PL FS+FPAVLL+TT+FRL+LS++TTR+ILLQ DAG+IV +FG
Sbjct  50   NICISSLLIVLAMYLPRPLAFSTFPAVLLLTTMFRLSLSIATTRLILLQQDAGHIVEAFG  109

Query  107  nfvvggnlivgivifliitivqflvitKGSERVAEVSARFSLDAMPGKQMSIDGDMRAGV  166
            +FVVGGNL VG+VIFLI+TIV+FLVITKGSERVAEV+ARF+LDAMPGKQMSID+D+RA +
Sbjct  110  SFVVGGNLAVGLVIFLILTIVNFLVITKGSERVAEVAARFTLDAMPGKQMSIDSDLRANL  169

Query  167  IDVNEARERRATIEKESQMFGSMDGAMKFVKGDAIAGLIIIFVNILGGVTIGVTQKGLAA  226
            I+V EAR+RR  + KESQ+FG+MDGAMKFVKGDAIAGL+I+F+N++GG +IGV Q+G+ A
Sbjct  170  INVREARHRREQLSKESQLFGAMDGAMKFVKGDAIAGLVIVFINLIGGFSIGVLQNGMEA  229

Query  227  AEALQLYSILTVGDGMVSQVPALLIAITAGIIVTRVSSED---SSDLGSDIGKQVVAQPK  283
            ++A++LYS+LT+GDG+++Q+PALLI++TAG+I+TRV+++     +++G +I+ Q+ +QPK
Sbjct  230  GDAMHLYSVLTIGDGLIAQIPALLISLTAGMIITRVAPDSQTADANIGHEIAEQLTSQPK  289

Query  284  AMliggvllllfglipgfpTVTFLILALLVGC--GGYMLSRKQSRNDEANQDLQSLLTSG  341
            A +++++ ++ FGLIPG PT+ F  +ALL  C  +G +  ++  R+ E +QD  S+ +++
Sbjct  290  AWVFSSIGMMGFGLIPGMPTLVFACIALL--CLFSGLIQLWR-IRQKELHQD--SIGAAS  344

Query  342  SGAPAARTKAKTSGANKGRLGEQEAFAMTVPLLIDVDSSQQEALEAIALNDELVRVRRAL  401
             GAP    +         R+    A+      L++ +SS+Q + E   L + + + R +L
Sbjct  345  KGAPELNGREDIR-----RFNPSRAY------LLQCHSSHQGTAELDRLIQGIRQRRNTL  393

Query  402  YLDLGVPFPGIHLRFNEGMGEGEYLISLQEVPVARGELKAGYLLVRESVSQLELLGIPYE  461
              ++G+ +P++++ F +    +E+ + + EVP  R+ +  +    R +V + E+   + E
Sbjct  394  VHNFGLTLPSFDMEFADHFEPDEFRFCVYEVPFIRATFTNA----RLAVDHREIDEDAGE  449

Query  462  KGEHLLPDQETFWVSVEYEERL--EKSQLEFFSHSQVLTWHLSHVLREYAEDFIGIQETR  519
             G   +  +ET WV V+ ++ L  E  +    S   +L  ++S+ ++  + +FIG+QE++
Sbjct  450  PGR--VERDETRWVWVDIDDPLLKEEEHAGVSSLELILE-RMSRAFQATGPQFIGLQESK  506

Query  520  YLLEQMEGGYGELIKEVQRIVPLQRMTEILQRLVGEDISIRNMRSILEAMVEWGQKEKDV  579
             +L  +E+   EL +E+QR +PL R + +LQRL +E +S+R++R+I E+++E GQ E+D+
Sbjct  507  AILSWLESEQPELAQELQRTLPLARFAAVLQRLSAELVSLRSVRPIAETLIEQGQHERDL  566

Query  580  VQLTEYIRSSLKRYICYKYANGNNILPAYLFDQEVEEKIRSAVRQTSAGSYLALDPAVTE  639
              LT+ +R +LK  IC +  + +N L + L   E E  +R ++RQT   SY+AL+P + +
Sbjct  567  NALTDHVRIALKAQICHQHCE-ENTLHTWLVTPETEVLLRDSLRQTQNESYFALEPELGN  625

Query  640  SLLEQVRKTIGDLSQIQSKPVLIVSMDIRRYVRKLIESEYYGLPVLSYQELTQQINIQPL  699
            +L+EQ+R ++    Q  ++PVL+V+ D+R  +R L+  ++  +PVLS+ EL   +++Q L
Sbjct  626  ALVEQLREAFP--LQASPRPVLLVAQDLRSPLRSLLTDQFHHVPVLSFAELIPTVQVQVL  683

Query  700  GRV  702
            GR+
Sbjct  684  GRI  686

50) M892_04485 in NC_022269


> AY597281|10|G10|51103113|AAT96256.1|Pseudomonas_viridiflava_ME3.1b|+|9189..11279|hrcV|-|HrcV
Length=696

 Score =  349 bits (1311),  Expect = 2e-97, Method: Compositional matrix adjust.
 Identities = 295/714 (42%), Positives = 503/714 (71%), Gaps = 35/714 (4%)

Query  1    MNKLIDILNKVG----QRKDIMLAVMLLAIVFMMILPLPTALVDVLIGTNMSIAVVLLML  56
            MN +I++LN+++     R +I+ AVM++AIVFMMILPLPT LVDVLI+ N+ I+ +L++L
Sbjct  1    MNGIIHLLNRLALAVMGRTEIVGAVMVMAIVFMMILPLPTWLVDVLIALNICISSLLIVL  60

Query  57   AIYITKPLEFSAFPAVllittlfrlslsitttrlillQGDAGQIVYtfgnfvvggnlvvg  116
            A+Y+ +PL FS+FPAVLL+TT+FRLSLSI+TTRLILLQ DAG+IV +FG+FVVGGNL VG
Sbjct  61   AMYLPRPLAFSTFPAVLLLTTMFRLSLSIATTRLILLQQDAGHIVEAFGSFVVGGNLAVG  120

Query  117  ivvfliitivQFMVITKGSERVAEVSARFSLDAMPGKQMSIDGDMRAGVIDVHEARHRRS  176
            +V+FLI+TIV+F+VITKGSERVAEV+ARF+LDAMPGKQMSID+D+RA +I+V+EARHRR 
Sbjct  121  LVIFLILTIVNFLVITKGSERVAEVAARFTLDAMPGKQMSIDSDLRANLINVREARHRRE  180

Query  177  LIEKESQMYGSMDGAMKFVKGDSIAgliiivvnilggvtigvtQKGMSASEALELFAILT  236
             + KESQ++G+MDGAMKFVKGD+IAGL+I+ +N++GG +IGV Q+GM A++A++L+++LT
Sbjct  181  QLSKESQLFGAMDGAMKFVKGDAIAGLVIVFINLIGGFSIGVLQNGMEAGDAMHLYSVLT  240

Query  237  VGDGLVSQIPALFIAITAGIIVTRVSNED---SSDLGSDIGGQVTAQPRALLVGGVLLIL  293
            +GDGL++QIPAL+I++TAG+I+TRV+ +     +++G +I+ Q+T+QP+A + +++ ++ 
Sbjct  241  IGDGLIAQIPALLISLTAGMIITRVAPDSQTADANIGHEIAEQLTSQPKAWVFSSIGMMG  300

Query  294  FALIPGFPKVTFLILAAIVGGGGFFLFYQQKKQSEYDSSDLPSFVAQGAGSPAAKPNKPT  353
            F+LIPG P + F  +A +   +G++ + + +++           + Q++ ++A+K     
Sbjct  301  FGLIPGMPTLVFACIALLCLFSGLIQLWRIRQKE----------LHQDSIGAASKGAPEL  350

Query  354  PSRNSKGKLGEQEEFAMTVPLLIDLDSRLQESLEAVALNDELARVRRALYLDLGVPFPGI  413
             +R+   ++     +      L++ +S  Q + E   L + + + R +L  ++G+ +P++
Sbjct  351  NGREDIRRFNPSRAY------LLQCHSSHQGTAELDRLIQGIRQRRNTLVHNFGLTLPSF  404

Query  414  HLRFNEGMSNGEYLIQLQEVPVARGRIESEKLLVTEGNEQIDLLGVP--YEKDDDFLPGI  471
            ++ F +    +E+ + + EVP  R+ + + +L V + + + D  G P   E+D+      
Sbjct  405  DMEFADHFEPDEFRFCVYEVPFIRATFTNARLAVDHREIDED-AGEPGRVERDET-----  458

Query  472  TSIWVDQSHHEKLQNSHVGFLTPDRILTYHLSHVLKEYAQDFIGIQETRYLLEQMESSYS  531
              +WVD  +    ++ H G  + + IL  ++S+ ++  + +FIG+QE++ +L  +ES  +
Sbjct  459  RWVWVDIDDPLLKEEEHAGVSSLELILE-RMSRAFQATGPQFIGLQESKAILSWLESEQP  517

Query  532  ELVKEAQRIVPLQKMTEILQRLVSEDISIRNLRVILEAMVEWGQKEKDVVQLTEYIRSSL  591
            EL +E QR +PL + + +LQRL +E +S+R++R I E+++E GQ E+D+  LT+ +R +L
Sbjct  518  ELAQELQRTLPLARFAAVLQRLSAELVSLRSVRPIAETLIEQGQHERDLNALTDHVRIAL  577

Query  592  KRYICYKYASGQNMLPAYLLDQSLEDTIRNGIRQTSAGSYLALDPSVTQQFVSDVKQTIG  651
            K  IC +    +N L + L+    E  +R+++RQT   SY+AL+P + + +V ++++++ 
Sbjct  578  KAQICHQH-CEENTLHTWLVTPETEVLLRDSLRQTQNESYFALEPELGNALVEQLREAFP  636

Query  652  DLSRMPNKPVLVVSMDVRRYVRKLIESEYYELPVLSFQELTQQINIQPLGRVGM  705
               + + +PVL+V+ D+R  +R L+  ++ ++PVLSF EL   +++Q LGR+++
Sbjct  637  --LQASPRPVLLVAQDLRSPLRSLLTDQFHHVPVLSFAELIPTVQVQVLGRIDL  688

51) VIBHAR_01736 in NC_009783


> AY597281|10|G10|51103113|AAT96256.1|Pseudomonas_viridiflava_ME3.1b|+|9189..11279|hrcV|-|HrcV
Length=696

 Score =  349 bits (1311),  Expect = 2e-97, Method: Compositional matrix adjust.
 Identities = 295/714 (42%), Positives = 503/714 (71%), Gaps = 35/714 (4%)

Query  1    MNKLIDILNKVG----QRKDIMLAVMLLAIVFMMILPLPTALVDVLIGTNMSIAVVLLML  56
            MN +I++LN+++     R +I+ AVM++AIVFMMILPLPT LVDVLI+ N+ I+ +L++L
Sbjct  1    MNGIIHLLNRLALAVMGRTEIVGAVMVMAIVFMMILPLPTWLVDVLIALNICISSLLIVL  60

Query  57   AIYITKPLEFSAFPAVllittlfrlslsitttrlillQGDAGQIVYtfgnfvvggnlvvg  116
            A+Y+ +PL FS+FPAVLL+TT+FRLSLSI+TTRLILLQ DAG+IV +FG+FVVGGNL VG
Sbjct  61   AMYLPRPLAFSTFPAVLLLTTMFRLSLSIATTRLILLQQDAGHIVEAFGSFVVGGNLAVG  120

Query  117  ivvfliitivQFMVITKGSERVAEVSARFSLDAMPGKQMSIDGDMRAGVIDVHEARHRRS  176
            +V+FLI+TIV+F+VITKGSERVAEV+ARF+LDAMPGKQMSID+D+RA +I+V+EARHRR 
Sbjct  121  LVIFLILTIVNFLVITKGSERVAEVAARFTLDAMPGKQMSIDSDLRANLINVREARHRRE  180

Query  177  LIEKESQMYGSMDGAMKFVKGDSIAgliiivvnilggvtigvtQKGMSASEALELFAILT  236
             + KESQ++G+MDGAMKFVKGD+IAGL+I+ +N++GG +IGV Q+GM A++A++L+++LT
Sbjct  181  QLSKESQLFGAMDGAMKFVKGDAIAGLVIVFINLIGGFSIGVLQNGMEAGDAMHLYSVLT  240

Query  237  VGDGLVSQIPALFIAITAGIIVTRVSNED---SSDLGSDIGGQVTAQPRALLVGGVLLIL  293
            +GDGL++QIPAL+I++TAG+I+TRV+ +     +++G +I+ Q+T+QP+A + +++ ++ 
Sbjct  241  IGDGLIAQIPALLISLTAGMIITRVAPDSQTADANIGHEIAEQLTSQPKAWVFSSIGMMG  300

Query  294  FALIPGFPKVTFLILAAIVGGGGFFLFYQQKKQSEYDSSDLPSFVAQGAGSPAAKPNKPT  353
            F+LIPG P + F  +A +   +G++ + + +++           + Q++ ++A+K     
Sbjct  301  FGLIPGMPTLVFACIALLCLFSGLIQLWRIRQKE----------LHQDSIGAASKGAPEL  350

Query  354  PSRNSKGKLGEQEEFAMTVPLLIDLDSRLQESLEAVALNDELARVRRALYLDLGVPFPGI  413
             +R+   ++     +      L++ +S  Q + E   L + + + R +L  ++G+ +P++
Sbjct  351  NGREDIRRFNPSRAY------LLQCHSSHQGTAELDRLIQGIRQRRNTLVHNFGLTLPSF  404

Query  414  HLRFNEGMSNGEYLIQLQEVPVARGRIESEKLLVTEGNEQIDLLGVP--YEKDDDFLPGI  471
            ++ F +    +E+ + + EVP  R+ + + +L V + + + D  G P   E+D+      
Sbjct  405  DMEFADHFEPDEFRFCVYEVPFIRATFTNARLAVDHREIDED-AGEPGRVERDET-----  458

Query  472  TSIWVDQSHHEKLQNSHVGFLTPDRILTYHLSHVLKEYAQDFIGIQETRYLLEQMESSYS  531
              +WVD  +    ++ H G  + + IL  ++S+ ++  + +FIG+QE++ +L  +ES  +
Sbjct  459  RWVWVDIDDPLLKEEEHAGVSSLELILE-RMSRAFQATGPQFIGLQESKAILSWLESEQP  517

Query  532  ELVKEAQRIVPLQKMTEILQRLVSEDISIRNLRVILEAMVEWGQKEKDVVQLTEYIRSSL  591
            EL +E QR +PL + + +LQRL +E +S+R++R I E+++E GQ E+D+  LT+ +R +L
Sbjct  518  ELAQELQRTLPLARFAAVLQRLSAELVSLRSVRPIAETLIEQGQHERDLNALTDHVRIAL  577

Query  592  KRYICYKYASGQNMLPAYLLDQSLEDTIRNGIRQTSAGSYLALDPSVTQQFVSDVKQTIG  651
            K  IC +    +N L + L+    E  +R+++RQT   SY+AL+P + + +V ++++++ 
Sbjct  578  KAQICHQH-CEENTLHTWLVTPETEVLLRDSLRQTQNESYFALEPELGNALVEQLREAFP  636

Query  652  DLSRMPNKPVLVVSMDVRRYVRKLIESEYYELPVLSFQELTQQINIQPLGRVGM  705
               + + +PVL+V+ D+R  +R L+  ++ ++PVLSF EL   +++Q LGR+++
Sbjct  637  --LQASPRPVLLVAQDLRSPLRSLLTDQFHHVPVLSFAELIPTVQVQVLGRIDL  688

52) HCH_03273 in NC_007645


> AY597281|10|G10|51103113|AAT96256.1|Pseudomonas_viridiflava_ME3.1b|+|9189..11279|hrcV|-|HrcV
Length=696

 Score =  345 bits (1295),  Expect = 5e-96, Method: Compositional matrix adjust.
 Identities = 292/687 (43%), Positives = 488/687 (72%), Gaps = 18/687 (2%)

Query  13   IAGRKDILFAAMLVAIIFMMILPLPTVLVDILIgvnmglavvllmvgvYLRSPLEFVAFP  72
            + GR +I+ A M++AI+FMMILPLPT LVD+LI++N+ ++ +L+++++YL  PL F +FP
Sbjct  15   VMGRTEIVGAVMVMAIVFMMILPLPTWLVDVLIALNICISSLLIVLAMYLPRPLAFSTFP  74

Query  73   SVllittlfrlslsitttrlillQADAGSIIEAfggfvvggnlvvglvifliitvvQFLV  132
            +VLL+TT+FRLSLSI+TTRLILLQ DAG I+EAFG+FVVGGNL VGLVIFLI+T+V+FLV
Sbjct  75   AVLLLTTMFRLSLSIATTRLILLQQDAGHIVEAFGSFVVGGNLAVGLVIFLILTIVNFLV  134

Query  133  ITKGSERVAEVSARFSLDAMPGKQMSIDGDMRAGVIDVDEARHRRSQVQKESQLYGSMDG  192
            ITKGSERVAEV+ARF+LDAMPGKQMSID+D+RA +I+V EARHRR Q+ KESQL+G+MDG
Sbjct  135  ITKGSERVAEVAARFTLDAMPGKQMSIDSDLRANLINVREARHRREQLSKESQLFGAMDG  194

Query  193  AMKFVKGDAIAGLIIIAVNILGGIAIGTLQNGMTSGEALELYALLTIGDGLVAQIPALFI  252
            AMKFVKGDAIAGL+I+ +N++GG++IG LQNGM +G+A++LY++LTIGDGL+AQIPAL+I
Sbjct  195  AMKFVKGDAIAGLVIVFINLIGGFSIGVLQNGMEAGDAMHLYSVLTIGDGLIAQIPALLI  254

Query  253  AITAGVIVTRVTTD---ESENLGADIANQIVSKPQAILIGGGLLFTFALIPGFPTLTFIV  309
            ++TAG+I+TRV+ D      N+G +IA+Q+ S+P+A ++++  +  F+LIPG PTL F  
Sbjct  255  SLTAGMIITRVAPDSQTADANIGHEIAEQLTSQPKAWVFSSIGMMGFGLIPGMPTLVFAC  314

Query  310  LALTLTGIGVFTLRQSKNASADKHPPLSAMAAAGQPPSKAQLNEAEEFTFTVPLLVDIAA  369
            +AL     G++ L++ ++   + H    + A+ G P  +++ ++   F  + + L++  +
Sbjct  315  IALLCLFSGLIQLWRIRQ--KELHQDSIGAASKGAPELNGR-EDIRRFNPSRAYLLQCHS  371

Query  370  DAEDALDPNALNEEILKIRRSLYLDLGVPFPGIHLRINHGLSDGRYKIHLQETP-IAEGF  428
              +++ + + L + I + R +L  ++G+ +P++++ + + +  + +++ + E P I   F
Sbjct  372  SHQGTAELDRLIQGIRQRRNTLVHNFGLTLPSFDMEFADHFEPDEFRFCVYEVPFIRATF  431

Query  429  IKPRQLLVRDQKEQLDLLAIEHNSEVELLPDAPAYWV-EQRHQTSLDKMEVAYLTPPRVL  487
             ++R  L  D++E       E+ +E   +    + WV  + ++  L   E A +++  ++
Sbjct  432  TNAR--LAVDHRE-----IDEDAGEPGRVERDETRWVWVDIDDPLLKEEEHAGVSSLELI  484

Query  488  SYHLSIILKKYAQEFIGIQETRFLLEKMEGRYGELVKEVQRLLPIQKITEILQRLVSEDI  547
              ++S  ++  + +FIG+QE++ +L  +E+   EL +E+QR LP+ +++ +LQRL +E +
Sbjct  485  LERMSRAFQATGPQFIGLQESKAILSWLESEQPELAQELQRTLPLARFAAVLQRLSAELV  544

Query  548  SIRNLRSILEALAEWAQKEKETVLLTEYVRNSLRRYISYKYSNGQNILPAYMLDQSLEDA  607
            S+R++R+I E+L E +Q E++   LT+ VR +L+  I  +  + +N L + ++    E  
Sbjct  545  SLRSVRPIAETLIEQGQHERDLNALTDHVRIALKAQICHQHCE-ENTLHTWLVTPETEVL  603

Query  608  IRGGVRQTSSGAYLALEPDTTRKIVEITRRTVGDLNPGAQKVVVITSMDVRRYLRKLLER  667
            +R+++RQT + +Y+ALEP+    +VE  R +   L+++++ V++++  D+R  LR LL  
Sbjct  604  LRDSLRQTQNESYFALEPELGNALVEQLREAFP-LQASPRPVLLVAQ-DLRSPLRSLLTD  661

Query  668  DMRQLPILSYQDLTPEITIQPLGRIAL  694
            + +++P+LS+ +L P + +Q LGRI L
Sbjct  662  QFHHVPVLSFAELIPTVQVQVLGRIDL  688

53) SG2090 in NC_007712


> AY597281|10|G10|51103113|AAT96256.1|Pseudomonas_viridiflava_ME3.1b|+|9189..11279|hrcV|-|HrcV
Length=696

 Score =  344 bits (1292),  Expect = 8e-96, Method: Compositional matrix adjust.
 Identities = 264/654 (41%), Positives = 438/654 (67%), Gaps = 29/654 (4%)

Query  34   AYLVDFLIGLNIVIAMLVFIGAFYIDRILSFSTFPAVLLITTLFRLALTISTSRLILTDA  93
            + LVD LI+LNI I+ L+++ A Y+ R L+FSTFPAVLL+TT+FRL+L+I+T+RLIL + 
Sbjct  40   TWLVDVLIALNICISSLLIVLAMYLPRPLAFSTFPAVLLLTTMFRLSLSIATTRLILLQQ  99

Query  94   DAGEIIATFGQFVIGDNLVVGFVIFAIVTVVQFIVITKGSERVAEVAARFCLDGMPGKQM  153
            DAG+I+ +FG FV+G+NL VG+VIF I+T+V+F+VITKGSERVAEVAARF LD+MPGKQM
Sbjct  100  DAGHIVEAFGSFVVGGNLAVGLVIFLILTIVNFLVITKGSERVAEVAARFTLDAMPGKQM  159

Query  154  SIDADLRGGVIDAEGARQRRSVLERESQLYGAFDGAMKFIKGDAIASIIVAFVNFIGGIA  213
            SID+DLR+ +I+   AR+RR  L +ESQL+GA DGAMKF+KGDAIA++++ F+N+IGG++
Sbjct  160  SIDSDLRANLINVREARHRREQLSKESQLFGAMDGAMKFVKGDAIAGLVIVFINLIGGFS  219

Query  214  VGMNQHHMDLSQALSTFTLLTIGDGLVGQIPALLISISAGLIVTRVNGDGD----NLGRN  269
            +G+ Q+ M+ ++A+  +++LTIGDGL++QIPALLIS++AG+I+TRV  D++    N+G++
Sbjct  220  IGVLQNGMEAGDAMHLYSVLTIGDGLIAQIPALLISLTAGMIITRVAPDSQTADANIGHE  279

Query  270  IMQQLLGNPFVLLVTAVLALSIGMLPGFPLPVFVmla-----malgtlllmRQRQTRVVP  324
            I +QL ++P   + +++  +++G++PG P  VF  +A      +L  L  +RQ++ +  +
Sbjct  280  IAEQLTSQPKAWVFSSIGMMGFGLIPGMPTLVFACIALLCLFSGLIQLWRIRQKELHQDS  339

Query  325  LPAAA----DYAGGYPERIMPEALAVILQVSRANYARLEKEQLCERL---RGQFLIDFGV  377
            + AA+    +  G    R    + A +LQ   ++ +  E ++L + +   R  ++ +FG+
Sbjct  340  IGAASKGAPELNGREDIRRFNPSRAYLLQCHSSHQGTAELDRLIQGIRQRRNTLVHNFGL  399

Query  378  ALPPLMLCPCEH--TDD-RTVVVVLNEIRADVFTLHFDMLRRVIPGDRPCPPDVTLHQEQ  434
            +LP++ +   +H   D+ R  V  +  IRA     ++ + +R I  D   P  V  ++E 
Sbjct  400  TLPSFDMEFADHFEPDEFRFCVYEVPFIRATFTNARLAVDHREIDEDAGEPGRVE-RDET  458

Query  435  EAVWAALDD---RERLLATGCVLRPAVDELYHCFAVMLTHHVNEFFGVQETKHLLDQMES  491
              VW  +DD   +E   A    L   ++ + + F         +F+G+QE+K +L  +ES
Sbjct  459  RWVWVDIDDPLLKEEEHAGVSSLELILERMSRAFQAT----GPQFIGLQESKAILSWLES  514

Query  492  HAPDLLKEVLRHATVQRIAELLQRLLMERISIRHLKLIMEAMALWAPREKDVSALVEHVR  551
            + P+L +E+ R   + R+A +LQRL  E +S+R ++ I E++   + +E+D++AL +HVR
Sbjct  515  EQPELAQELQRTLPLARFAAVLQRLSAELVSLRSVRPIAETLIEQGQHERDLNALTDHVR  574

Query  552  CALARYICHQFAADNLLRVIMLSSEVEETLRDSLHTTSAGTFLNLGPQVSEELMELFTSA  611
             AL   ICHQ   +N L+  ++++E E  LRDSL+ T   +++ L P++++ L+E +  A
Sbjct  575  IALKAQICHQHCEENTLHTWLVTPETEVLLRDSLRQTQNESYFALEPELGNALVEQLREA  634

Query  612  LESLPIAQRDIVLLAAADIRRFIKSLIQHRFRDLEVLSFGELTESVTVNVIKTI  665
            + +L  + R  VLL A D+R  ++SL+ ++F+++ VLSF+EL  +V V+V+  I
Sbjct  635  F-PLQASPRP-VLLVAQDLRSPLRSLLTDQFHHVPVLSFAELIPTVQVQVLGRI  686

54) VEA_003372 in NC_013456


> AY597281|10|G10|51103113|AAT96256.1|Pseudomonas_viridiflava_ME3.1b|+|9189..11279|hrcV|-|HrcV
Length=696

 Score =  339 bits (1274),  Expect = 2e-94, Method: Compositional matrix adjust.
 Identities = 294/717 (42%), Positives = 498/717 (70%), Gaps = 41/717 (5%)

Query  1    MNKLIDILNKVG----QRKDIMLAVMLLAIVFMMILPLPTALVDVLIGTNMSIAVVLLML  56
            MN +I++LN+++     R +I+ AVM++AIVFMMILPLPT LVDVLI+ N+ I+ +L++L
Sbjct  1    MNGIIHLLNRLALAVMGRTEIVGAVMVMAIVFMMILPLPTWLVDVLIALNICISSLLIVL  60

Query  57   AIYITTPLEFSAFPAVllittlfrlslsitttrlillQGDAGQIVYtfgnfvvggnlvvg  116
            A+Y+  PL FS+FPAVLL+TT+FRLSLSI+TTRLILLQ DAG+IV +FG+FVVGGNL VG
Sbjct  61   AMYLPRPLAFSTFPAVLLLTTMFRLSLSIATTRLILLQQDAGHIVEAFGSFVVGGNLAVG  120

Query  117  ivvfliitivQFMVITKGSERVAEVSARFSLDAMPGKQMSIDGDMRAGVIDVHEARHRRS  176
            +V+FLI+TIV+F+VITKGSERVAEV+ARF+LDAMPGKQMSID+D+RA +I+V+EARHRR 
Sbjct  121  LVIFLILTIVNFLVITKGSERVAEVAARFTLDAMPGKQMSIDSDLRANLINVREARHRRE  180

Query  177  LIEKESQMYGSMDGAMKFVKGDSIAglviivvnilggvtigvtQKGMSASEALELFAILT  236
             + KESQ++G+MDGAMKFVKGD+IAGLVI+ +N++GG +IGV Q+GM A++A++L+++LT
Sbjct  181  QLSKESQLFGAMDGAMKFVKGDAIAGLVIVFINLIGGFSIGVLQNGMEAGDAMHLYSVLT  240

Query  237  VGDGLVSQIPALFIAITAGIIVTRVSHED---SSDLGSDIGGQVIAQPRALLIGGVLLVL  293
            +GDGL++QIPAL+I++TAG+I+TRV+ +     +++G +I+ Q+ +QP+A +++++ ++ 
Sbjct  241  IGDGLIAQIPALLISLTAGMIITRVAPDSQTADANIGHEIAEQLTSQPKAWVFSSIGMMG  300

Query  294  FALIPGFPKITFLVLATVVGGGGFFLFYQQKKQAASDTTDLSSFVSQgagspaakpskpT  353
            F+LIPG P + F  +A +   +G++ + + +++   + +                     
Sbjct  301  FGLIPGMPTLVFACIALLCLFSGLIQLWRIRQKELHQDS-------------------IG  341

Query  354  PSRNSKGKLGEQEE---FAMTVPLLIDLDASLQESLEAVALNEELARVRRALYLDLGVPF  410
            ++ ++   L  +E+   F  + + L++ ++S Q + E   L + + + R +L  ++G+ +
Sbjct  342  AASKGAPELNGREDIRRFNPSRAYLLQCHSSHQGTAELDRLIQGIRQRRNTLVHNFGLTL  401

Query  411  PGIHLRFNEGMQNGEYLIQLQEVPVARGRIVKDQLLVTEGNEQIDLLGVPYEQDEDFLPG  470
            P++++ F +  + +E+ + + EVP  R+ + + +L V + + + D  G P   + D    
Sbjct  402  PSFDMEFADHFEPDEFRFCVYEVPFIRATFTNARLAVDHREIDED-AGEPGRVERD---E  457

Query  471  ISSIWVAQSYEQKL--TTSHVGFLTPDRILTYHLSHVLKEYAQDFIGIQETRYLLEQMEG  528
               +WV    ++ L     H G  + + IL  ++S+ ++  + +FIG+QE++ +L  +E+
Sbjct  458  TRWVWV--DIDDPLLKEEEHAGVSSLELILE-RMSRAFQATGPQFIGLQESKAILSWLES  514

Query  529  SYSELVKEAQRIVPLQKMTEILQRLVSEDISIRNLRVILEAMVEWGQKEKDVVQLTEYIR  588
              +EL +E QR +PL + + +LQRL +E +S+R++R I E+++E GQ E+D+  LT+ +R
Sbjct  515  EQPELAQELQRTLPLARFAAVLQRLSAELVSLRSVRPIAETLIEQGQHERDLNALTDHVR  574

Query  589  SSLKRYICYKYASGQNMLPAYLLDQSLEDTIRSGIRQTSAGSYLALDPSVTQQFVSDVKQ  648
             +LK  IC +    +N L + L+    E  +R ++RQT   SY+AL+P + + +V ++++
Sbjct  575  IALKAQICHQH-CEENTLHTWLVTPETEVLLRDSLRQTQNESYFALEPELGNALVEQLRE  633

Query  649  TIGDLSRMPNKPVLVVSMDVRRYVRKLIESEYYDLPVLSFQELTQQINIQPLGRVGM  705
            ++  L   P +PVL+V+ D+R  +R L+  ++ ++PVLSF EL   +++Q LGR+++
Sbjct  634  AFP-LQASP-RPVLLVAQDLRSPLRSLLTDQFHHVPVLSFAELIPTVQVQVLGRIDL  688

55) bcrD in NC_002928


> AY597281|10|G10|51103113|AAT96256.1|Pseudomonas_viridiflava_ME3.1b|+|9189..11279|hrcV|-|HrcV
Length=696

 Score =  337 bits (1263),  Expect = 2e-93, Method: Compositional matrix adjust.
 Identities = 311/687 (46%), Positives = 485/687 (71%), Gaps = 24/687 (3%)

Query  4    KKSILRLQRAVALAT-SRNDivlavlivaivFMMILPLPTTLVDVLIGANMTLSAVLLMV  62
             ++I++L   +ALA  +R +IV AV+++AIVFMMILPLPT LVDVLI+ N+ +S++L+++
Sbjct  1    MNGIIHLLNRLALAVMGRTEIVGAVMVMAIVFMMILPLPTWLVDVLIALNICISSLLIVL  60

Query  63   AMYlpsplafssfpsvllvTTLFRLGISIATTRLILLQGDAGHIIETfgnfvvggnlivg  122
            AMYLP PLAFS+FP+VLL+TT+FRL++SIATTRLILLQ DAGHI+E+FG+FVVGGNL VG
Sbjct  61   AMYLPRPLAFSTFPAVLLLTTMFRLSLSIATTRLILLQQDAGHIVEAFGSFVVGGNLAVG  120

Query  123  lvvflilTIVQFVVITKGAERVAEVAARFSLDAMPGKQMSIDADLRAGTIDMDEARRRRR  182
            LV+FLILTIV+F+VITKG+ERVAEVAARF+LDAMPGKQMSID+DLRA  I++ EAR+RR 
Sbjct  121  LVIFLILTIVNFLVITKGSERVAEVAARFTLDAMPGKQMSIDSDLRANLINVREARHRRE  180

Query  183  TVEKESQLYGAMDGAMKFVKGDAIAGLIIvavnllggmlvgvlqrglSAGEAVQTYAILT  242
             + KESQL+GAMDGAMKFVKGDAIAGL+IV +NL+GG  +GVLQ G+ AG+A++ Y++LT
Sbjct  181  QLSKESQLFGAMDGAMKFVKGDAIAGLVIVFINLIGGFSIGVLQNGMEAGDAMHLYSVLT  240

Query  243  IGDGLIAQIPALFIAICAGIIVTRV--QTGDGPSNVGTDIGAQVLAQPRALVIAGAISAG  300
            IGDGLIAQIPAL+I++ AG+I+TRV  ++  + +N+G +I+ Q+ +QP+A V+++    G
Sbjct  241  IGDGLIAQIPALLISLTAGMIITRVAPDSQTADANIGHEIAEQLTSQPKAWVFSSIGMMG  300

Query  301  LGLIPGMPTLVFFALAAVVGTIGFV-LLRASQRPPEGAGPALAGMAADGQPRTRAPADGQ  359
            +GLIPGMPTLVF  +A +    G++ L R  Q+  +  +    G A+ G P   +  D +
Sbjct  301  FGLIPGMPTLVFACIALLCLFSGLIQLWRIRQKELHQDS---IGAASKGAPELNGREDIR  357

Query  360  AEFAPTVPLIIDVAARLQPRFEPATLTDDLLQIRRALYFDLGVPFPGIQLRFTEALAANT  419
              F P+ + +++  +  Q   E   L +++ Q R +L  ++G+ +P++++ F++ + ++ 
Sbjct  358  -RFNPSRAYLLQCHSSHQGTAELDRLIQGIRQRRNTLVHNFGLTLPSFDMEFADHFEPDE  416

Query  420  YTIVLSEIPVAQGMLRDDAVLV--RDTEQNLQALRIAYETGAAFLPDTPTIWV--AASLT  475
            + + + E+P  ++ + +  + V  R+ +++      A E G     +T  +WV    +L 
Sbjct  417  FRFCVYEVPFIRATFTNARLAVDHREIDED------AGEPGRVERDETRWVWVDIDDPLL  470

Query  476  GALRDAGIPYLGISQILTWHLAYVLKKYSADFIGIQETRFLLSAMEERFPDLVKECLRVM  535
                +AG++ L +  IL  +++  ++  +++FIG+QE++ +LS +E   P+L +E  R +
Sbjct  471  KEEEHAGVSSLEL--ILE-RMSRAFQATGPQFIGLQESKAILSWLESEQPELAQELQRTL  527

Query  536  PVQKIAEILQRLVSEEVSIRNLRAVLEALVEWGQKEKDTVLLTEYVRIALKRYISYKYTS  595
            P+ ++A +LQRL +E VS+R++R++ E+L+E GQ E+D   LT+ VRIALK  I  +   
Sbjct  528  PLARFAAVLQRLSAELVSLRSVRPIAETLIEQGQHERDLNALTDHVRIALKAQICHQH-C  586

Query  596  GHNILPAYLLAPKVEETVRAAIRQTAAGSYLALDPDTTRRLVEYIRQCVGDLAAGASRPV  655
             +N L + L++P  E  +R ++RQT   SY+AL+P+    LVE +R+       +++RPV
Sbjct  587  EENTLHTWLVTPETEVLLRDSLRQTQNESYFALEPELGNALVEQLREAFP--LQASPRPV  644

Query  656  LLTSMDIRRYTRKMIEADLYALPVLSY  682
            LL + D+R   R ++  ++  +PVLS+
Sbjct  645  LLVAQDLRSPLRSLLTDQFHHVPVLSF  671

56) N646_0730 in NC_022349


> AY597281|10|G10|51103113|AAT96256.1|Pseudomonas_viridiflava_ME3.1b|+|9189..11279|hrcV|-|HrcV
Length=696

 Score =  332 bits (1247),  Expect = 3e-92, Method: Compositional matrix adjust.
 Identities = 296/718 (42%), Positives = 503/718 (71%), Gaps = 43/718 (5%)

Query  1    MNKLIDILNKVG----QRKDIMLAVMLLAIVFMMILPLPTALVDVLIGTNMSIAVVLLML  56
            MN +I++LN+++     R +I+ AVM++AIVFMMILPLPT LVDVLI+ N+ I+ +L++L
Sbjct  1    MNGIIHLLNRLALAVMGRTEIVGAVMVMAIVFMMILPLPTWLVDVLIALNICISSLLIVL  60

Query  57   AIYITTPLEFSAFPAVllittlfrlslsitttrlillQGDAGQIVYtfgnfvvggnlvvg  116
            A+Y+  PL FS+FPAVLL+TT+FRLSLSI+TTRLILLQ DAG+IV +FG+FVVGGNL VG
Sbjct  61   AMYLPRPLAFSTFPAVLLLTTMFRLSLSIATTRLILLQQDAGHIVEAFGSFVVGGNLAVG  120

Query  117  ivvfliitivQFMVITKGSERVAEVSARFSLDAMPGKQMSIDGDMRAGVIDVHEARHRRS  176
            +V+FLI+TIV+F+VITKGSERVAEV+ARF+LDAMPGKQMSID+D+RA +I+V+EARHRR 
Sbjct  121  LVIFLILTIVNFLVITKGSERVAEVAARFTLDAMPGKQMSIDSDLRANLINVREARHRRE  180

Query  177  LIEKESQMYGSMDGAMKFVKGDSIAglviivvnilggvtigvtQKGMSASEALELFAILT  236
             + KESQ++G+MDGAMKFVKGD+IAGLVI+ +N++GG +IGV Q+GM A++A++L+++LT
Sbjct  181  QLSKESQLFGAMDGAMKFVKGDAIAGLVIVFINLIGGFSIGVLQNGMEAGDAMHLYSVLT  240

Query  237  VGDGLVSQIPALFIAITAGIIVTRV---SHEDSSDLGSDIGGQVIAQPRALLIGGVLLVL  293
            +GDGL++QIPAL+I++TAG+I+TRV   S+   +++G +I+ Q+ +QP+A +++++ ++ 
Sbjct  241  IGDGLIAQIPALLISLTAGMIITRVAPDSQTADANIGHEIAEQLTSQPKAWVFSSIGMMG  300

Query  294  FALIPGFPKITflvlaavvggggfflfYQ-QKKQAESDSTDLSSFVSQgagspaakpskp  352
            F+LIPG P + F  +A +   +G++ + + ++K+ + DS +                   
Sbjct  301  FGLIPGMPTLVFACIALLCLFSGLIQLWRIRQKELHQDSIG-------------------  341

Query  353  TPSRNSKGKLGEQEE---FAMTVPLLIDLDASLQESLEAVALNEELARVRRALYLDLGVP  409
             ++ ++   L  +E+   F  + + L++ ++S Q + E   L + + + R +L  ++G+ 
Sbjct  342  -AASKGAPELNGREDIRRFNPSRAYLLQCHSSHQGTAELDRLIQGIRQRRNTLVHNFGLT  400

Query  410  FPGIHLRFNEGMQNGEYLIQLQEVPVARGRIVKDQLLVTEGNEQIDLLGVPYEQDEDFLP  469
            +P++++ F +  + +E+ + + EVP  R+ + + +L V + + + D  G P   + D   
Sbjct  401  LPSFDMEFADHFEPDEFRFCVYEVPFIRATFTNARLAVDHREIDED-AGEPGRVERD---  456

Query  470  GISSIWVAQSYEQKLV--ASHVGFLTPDRILTYHLSHVLKEYAQDFIGIQETRYLLEQME  527
               + WV    ++ L+    H G  + + IL  ++S+ ++  + +FIG+QE++ +L  +E
Sbjct  457  --ETRWVWVDIDDPLLKEEEHAGVSSLELILE-RMSRAFQATGPQFIGLQESKAILSWLE  513

Query  528  GSYSELVKEAQRIVPLQKMTEILQRLVSEDISIRNLRVILEAMVEWGQKEKDVVQLTEYI  587
            +  +EL +E QR +PL + + +LQRL +E +S+R++R I E+++E GQ E+D+  LT+ +
Sbjct  514  SEQPELAQELQRTLPLARFAAVLQRLSAELVSLRSVRPIAETLIEQGQHERDLNALTDHV  573

Query  588  RSSLKRYICYKYASGQNMLPAYLLDQNLEDTIRSGIRQTSAGSYLALDPSVTQQFVSDVK  647
            R +LK  IC +    +N L + L+  + E  +R ++RQT   SY+AL+P + + +V +++
Sbjct  574  RIALKAQICHQH-CEENTLHTWLVTPETEVLLRDSLRQTQNESYFALEPELGNALVEQLR  632

Query  648  QTIGDLSRMPNKPVLVVSMDVRRYVRKLIESEYYDLPVLSFQELTQQINIQPLGRVGM  705
            +++    + + +PVL+V+ D+R  +R L+  ++ ++PVLSF EL   +++Q LGR+++
Sbjct  633  EAFP--LQASPRPVLLVAQDLRSPLRSLLTDQFHHVPVLSFAELIPTVQVQVLGRIDL  688

57) VPBB_1522 in NC_019955


> AY597281|10|G10|51103113|AAT96256.1|Pseudomonas_viridiflava_ME3.1b|+|9189..11279|hrcV|-|HrcV
Length=696

 Score =  332 bits (1245),  Expect = 4e-92, Method: Compositional matrix adjust.
 Identities = 298/714 (42%), Positives = 498/714 (70%), Gaps = 35/714 (4%)

Query  1    MNKLIDILNKVG----QRKDIMLAVMLLAIVFMMILPLPTALVDVLIGANMSIAVVLLML  56
            MN +I++LN+++     R +I+ AVM++AIVFMMILPLPT LVDVLI+ N+ I+ +L++L
Sbjct  1    MNGIIHLLNRLALAVMGRTEIVGAVMVMAIVFMMILPLPTWLVDVLIALNICISSLLIVL  60

Query  57   AIYITTPLEFSAFPAVllittlfrlslsitttrlillQGDAGQIVYtfgnfvvggnlvvg  116
            A+Y+  PL FS+FPAVLL+TT+FRLSLSI+TTRLILLQ DAG+IV +FG+FVVGGNL VG
Sbjct  61   AMYLPRPLAFSTFPAVLLLTTMFRLSLSIATTRLILLQQDAGHIVEAFGSFVVGGNLAVG  120

Query  117  ivvfliitivQFMVITKGSERVAEVSARFSLDAMPGKQMSIDGDMRAGVIDVHEARHRRS  176
            +V+FLI+TIV+F+VITKGSERVAEV+ARF+LDAMPGKQMSID+D+RA +I+V+EARHRR 
Sbjct  121  LVIFLILTIVNFLVITKGSERVAEVAARFTLDAMPGKQMSIDSDLRANLINVREARHRRE  180

Query  177  LIEKESQMYGSMDGAMKFVKGDSIAglviiivnilggvtigvtQKGMSASEALELFAILT  236
             + KESQ++G+MDGAMKFVKGD+IAGLVI+++N++GG +IGV Q+GM A++A++L+++LT
Sbjct  181  QLSKESQLFGAMDGAMKFVKGDAIAGLVIVFINLIGGFSIGVLQNGMEAGDAMHLYSVLT  240

Query  237  VGDGLVSQIPALFIAITAGIIVTRV---SHEDSADLGSDIGGQVTAQPRALLIGGVLLVL  293
            +GDGL++QIPAL+I++TAG+I+TRV   S+   A++G +I+ Q+T+QP+A +++++ ++ 
Sbjct  241  IGDGLIAQIPALLISLTAGMIITRVAPDSQTADANIGHEIAEQLTSQPKAWVFSSIGMMG  300

Query  294  FALIPGFPKITflvlalvvggggfylfyQQKKQTESESSDLPSFVAQGAGSPAAKPNKPT  353
            F+LIPG P + F  +AL+   +G+  + + +++           + Q++ ++A+K     
Sbjct  301  FGLIPGMPTLVFACIALLCLFSGLIQLWRIRQKE----------LHQDSIGAASKGAPEL  350

Query  354  PSRGSKGKLGEQEEFAMTVPLLIDLDSSLQESLEAVALNDELARVRRALYLDLGVPFPGI  413
             +R    ++     +      L++ +SS Q + E   L + + + R +L  ++G+ +P++
Sbjct  351  NGREDIRRFNPSRAY------LLQCHSSHQGTAELDRLIQGIRQRRNTLVHNFGLTLPSF  404

Query  414  HLRFNDGMKNGEYLIQLQEVPVARGRIEKDKLLVTEGSDQIELLGVPFEQDDDFLPGVSS  473
            ++ F D    +E+ + + EVP  R+ + + +L V +   + +  G P   + D      +
Sbjct  405  DMEFADHFEPDEFRFCVYEVPFIRATFTNARLAVDHREIDED-AGEPGRVERD-----ET  458

Query  474  LWVAQSYQEKL--TASHVGFLTPDRILTFHLSHVLKEYAQDFIGIQETRYLLEQMEGSYS  531
             WV    ++ L     H G  + + IL  ++S+ ++  + +FIG+QE++ +L  +E+  +
Sbjct  459  RWVWVDIDDPLLKEEEHAGVSSLELILE-RMSRAFQATGPQFIGLQESKAILSWLESEQP  517

Query  532  ELVKEAQRIVPLQKMTEILQRLVSEDISIRNLRVILEAMVEWGQKEKDVVQLTEYIRSSL  591
            EL +E QR +PL + + +LQRL +E +S+R++R I E+++E GQ E+D+  LT+ +R +L
Sbjct  518  ELAQELQRTLPLARFAAVLQRLSAELVSLRSVRPIAETLIEQGQHERDLNALTDHVRIAL  577

Query  592  KRYICYKYASGQNMLPAYLLDQSLEDTIRSGIRQTSAGSYLALDPSVTQQFVSDVKQTVG  651
            K  IC +    +N L + L+    E  +R ++RQT   SY+AL+P + + +V +++++  
Sbjct  578  KAQICHQH-CEENTLHTWLVTPETEVLLRDSLRQTQNESYFALEPELGNALVEQLREAFP  636

Query  652  DLSRMPNKPVLVVSMDVRRYVRKLIESEYYDLPVLSFQELTQQINIQPLGRVGM  705
               + + +PVL+V+ D+R  +R L+  ++ ++PVLSF EL   +++Q LGR+++
Sbjct  637  --LQASPRPVLLVAQDLRSPLRSLLTDQFHHVPVLSFAELIPTVQVQVLGRIDL  688

58) M636_13755 in NC_021848


> AY597281|10|G10|51103113|AAT96256.1|Pseudomonas_viridiflava_ME3.1b|+|9189..11279|hrcV|-|HrcV
Length=696

 Score =  332 bits (1246),  Expect = 4e-92, Method: Compositional matrix adjust.
 Identities = 298/714 (42%), Positives = 498/714 (70%), Gaps = 35/714 (4%)

Query  1    MNKLIDILNKVG----QRKDIMLAVMLLAIVFMMILPLPTALVDVLIGANMSIAVVLLML  56
            MN +I++LN+++     R +I+ AVM++AIVFMMILPLPT LVDVLI+ N+ I+ +L++L
Sbjct  1    MNGIIHLLNRLALAVMGRTEIVGAVMVMAIVFMMILPLPTWLVDVLIALNICISSLLIVL  60

Query  57   AIYITTPLEFSAFPAVllittlfrlslsitttrlillQGDAGQIVYtfgnfvvggnlvvg  116
            A+Y+  PL FS+FPAVLL+TT+FRLSLSI+TTRLILLQ DAG+IV +FG+FVVGGNL VG
Sbjct  61   AMYLPRPLAFSTFPAVLLLTTMFRLSLSIATTRLILLQQDAGHIVEAFGSFVVGGNLAVG  120

Query  117  ivvfliitivQFMVITKGSERVAEVSARFSLDAMPGKQMSIDGDMRAGVIDVHEARHRRS  176
            +V+FLI+TIV+F+VITKGSERVAEV+ARF+LDAMPGKQMSID+D+RA +I+V+EARHRR 
Sbjct  121  LVIFLILTIVNFLVITKGSERVAEVAARFTLDAMPGKQMSIDSDLRANLINVREARHRRE  180

Query  177  LIEKESQMYGSMDGAMKFVKGDSIAglviiivnilggvtigvtQKGMSASEALELFAILT  236
             + KESQ++G+MDGAMKFVKGD+IAGLVI+++N++GG +IGV Q+GM A++A++L+++LT
Sbjct  181  QLSKESQLFGAMDGAMKFVKGDAIAGLVIVFINLIGGFSIGVLQNGMEAGDAMHLYSVLT  240

Query  237  VGDGLVSQIPALFIAITAGIIVTRV---SHEDSADLGSDIGGQVTAQPRALLIGGVLLIL  293
            +GDGL++QIPAL+I++TAG+I+TRV   S+   A++G +I+ Q+T+QP+A +++++ ++ 
Sbjct  241  IGDGLIAQIPALLISLTAGMIITRVAPDSQTADANIGHEIAEQLTSQPKAWVFSSIGMMG  300

Query  294  FALIPGFPKITflvlalvvggggfylfyQQKKQTESESSDLPSFVAQGAGSPAAKPNKPT  353
            F+LIPG P + F  +AL+   +G+  + + +++           + Q++ ++A+K     
Sbjct  301  FGLIPGMPTLVFACIALLCLFSGLIQLWRIRQKE----------LHQDSIGAASKGAPEL  350

Query  354  PSRGSKGKLGEQEEFAMTVPLLIDLDSSLQESLEAVALNDELARVRRALYLDLGVPFPGI  413
             +R    ++     +      L++ +SS Q + E   L + + + R +L  ++G+ +P++
Sbjct  351  NGREDIRRFNPSRAY------LLQCHSSHQGTAELDRLIQGIRQRRNTLVHNFGLTLPSF  404

Query  414  HLRFNDGMKNGEYLIQLQEVPVARGRIEKDKLLVTEGSDQIELLGVPFEQDDDFLPGVSS  473
            ++ F D    +E+ + + EVP  R+ + + +L V +   + +  G P   + D      +
Sbjct  405  DMEFADHFEPDEFRFCVYEVPFIRATFTNARLAVDHREIDED-AGEPGRVERD-----ET  458

Query  474  LWVAQSYQEKL--TASHVGFLTPDRILTFHLSHVLKEYAQDFIGIQETRYLLEQMEGSYS  531
             WV    ++ L     H G  + + IL  ++S+ ++  + +FIG+QE++ +L  +E+  +
Sbjct  459  RWVWVDIDDPLLKEEEHAGVSSLELILE-RMSRAFQATGPQFIGLQESKAILSWLESEQP  517

Query  532  ELVKEAQRIVPLQKMTEILQRLVSEDISIRNLRVILEAMVEWGQKEKDVVQLTEYIRSSL  591
            EL +E QR +PL + + +LQRL +E +S+R++R I E+++E GQ E+D+  LT+ +R +L
Sbjct  518  ELAQELQRTLPLARFAAVLQRLSAELVSLRSVRPIAETLIEQGQHERDLNALTDHVRIAL  577

Query  592  KRYICYKYASGQNMLPAYLLDQSLEDTIRSGIRQTSAGSYLALDPSVTQQFVSDVKQTVG  651
            K  IC +    +N L + L+    E  +R ++RQT   SY+AL+P + + +V +++++  
Sbjct  578  KAQICHQH-CEENTLHTWLVTPETEVLLRDSLRQTQNESYFALEPELGNALVEQLREAFP  636

Query  652  DLSRMPNKPVLVVSMDVRRYVRKLIESEYYDLPVLSFQELTQQINIQPLGRVGM  705
               + + +PVL+V+ D+R  +R L+  ++ ++PVLSF EL   +++Q LGR+++
Sbjct  637  --LQASPRPVLLVAQDLRSPLRSLLTDQFHHVPVLSFAELIPTVQVQVLGRIDL  688

59) VP1662 in NC_004603


> AY597281|10|G10|51103113|AAT96256.1|Pseudomonas_viridiflava_ME3.1b|+|9189..11279|hrcV|-|HrcV
Length=696

 Score =  332 bits (1245),  Expect = 4e-92, Method: Compositional matrix adjust.
 Identities = 298/714 (42%), Positives = 498/714 (70%), Gaps = 35/714 (4%)

Query  4    MNKLIDILNKVG----QRKDIMLAVMLLAIVFMMILPLPTALVDVLIGANMSIAVVLLML  59
            MN +I++LN+++     R +I+ AVM++AIVFMMILPLPT LVDVLI+ N+ I+ +L++L
Sbjct  1    MNGIIHLLNRLALAVMGRTEIVGAVMVMAIVFMMILPLPTWLVDVLIALNICISSLLIVL  60

Query  60   AIYITTPLEFSAFPAVllittlfrlslsitttrlillQGDAGQIVYtfgnfvvggnlvvg  119
            A+Y+  PL FS+FPAVLL+TT+FRLSLSI+TTRLILLQ DAG+IV +FG+FVVGGNL VG
Sbjct  61   AMYLPRPLAFSTFPAVLLLTTMFRLSLSIATTRLILLQQDAGHIVEAFGSFVVGGNLAVG  120

Query  120  ivvfliitivQFMVITKGSERVAEVSARFSLDAMPGKQMSIDGDMRAGVIDVHEARHRRS  179
            +V+FLI+TIV+F+VITKGSERVAEV+ARF+LDAMPGKQMSID+D+RA +I+V+EARHRR 
Sbjct  121  LVIFLILTIVNFLVITKGSERVAEVAARFTLDAMPGKQMSIDSDLRANLINVREARHRRE  180

Query  180  LIEKESQMYGSMDGAMKFVKGDSIAglviiivnilggvtigvtQKGMSASEALELFAILT  239
             + KESQ++G+MDGAMKFVKGD+IAGLVI+++N++GG +IGV Q+GM A++A++L+++LT
Sbjct  181  QLSKESQLFGAMDGAMKFVKGDAIAGLVIVFINLIGGFSIGVLQNGMEAGDAMHLYSVLT  240

Query  240  VGDGLVSQIPALFIAITAGIIVTRV---SHEDSADLGSDIGGQVTAQPRALLIGGVLLVL  296
            +GDGL++QIPAL+I++TAG+I+TRV   S+   A++G +I+ Q+T+QP+A +++++ ++ 
Sbjct  241  IGDGLIAQIPALLISLTAGMIITRVAPDSQTADANIGHEIAEQLTSQPKAWVFSSIGMMG  300

Query  297  FALIPGFPKITflvlalvvggggfylfyQQKKQTESESSDLPSFVAQGAGSPAAKPNKPT  356
            F+LIPG P + F  +AL+   +G+  + + +++           + Q++ ++A+K     
Sbjct  301  FGLIPGMPTLVFACIALLCLFSGLIQLWRIRQKE----------LHQDSIGAASKGAPEL  350

Query  357  PSRGSKGKLGEQEEFAMTVPLLIDLDSSLQESLEAVALNDELARVRRALYLDLGVPFPGI  416
             +R    ++     +      L++ +SS Q + E   L + + + R +L  ++G+ +P++
Sbjct  351  NGREDIRRFNPSRAY------LLQCHSSHQGTAELDRLIQGIRQRRNTLVHNFGLTLPSF  404

Query  417  HLRFNDGMKNGEYLIQLQEVPVARGRIEKDKLLVTEGSDQIELLGVPFEQDDDFLPGVSS  476
            ++ F D    +E+ + + EVP  R+ + + +L V +   + +  G P   + D      +
Sbjct  405  DMEFADHFEPDEFRFCVYEVPFIRATFTNARLAVDHREIDED-AGEPGRVERD-----ET  458

Query  477  LWVAQSYQEKL--TASHVGFLTPDRILTFHLSHVLKEYAQDFIGIQETRYLLEQMEGSYS  534
             WV    ++ L     H G  + + IL  ++S+ ++  + +FIG+QE++ +L  +E+  +
Sbjct  459  RWVWVDIDDPLLKEEEHAGVSSLELILE-RMSRAFQATGPQFIGLQESKAILSWLESEQP  517

Query  535  ELVKEAQRIVPLQKMTEILQRLVSEDISIRNLRVILEAMVEWGQKEKDVVQLTEYIRSSL  594
            EL +E QR +PL + + +LQRL +E +S+R++R I E+++E GQ E+D+  LT+ +R +L
Sbjct  518  ELAQELQRTLPLARFAAVLQRLSAELVSLRSVRPIAETLIEQGQHERDLNALTDHVRIAL  577

Query  595  KRYICYKYASGQNMLPAYLLDQSLEDTIRSGIRQTSAGSYLALDPSVTQQFVSDVKQTVG  654
            K  IC +    +N L + L+    E  +R ++RQT   SY+AL+P + + +V +++++  
Sbjct  578  KAQICHQH-CEENTLHTWLVTPETEVLLRDSLRQTQNESYFALEPELGNALVEQLREAFP  636

Query  655  DLSRMPNKPVLVVSMDVRRYVRKLIESEYYDLPVLSFQELTQQINIQPLGRVGM  708
               + + +PVL+V+ D+R  +R L+  ++ ++PVLSF EL   +++Q LGR+++
Sbjct  637  --LQASPRPVLLVAQDLRSPLRSLLTDQFHHVPVLSFAELIPTVQVQVLGRIDL  688

60) M634_09155 in NC_021847


> AY597281|10|G10|51103113|AAT96256.1|Pseudomonas_viridiflava_ME3.1b|+|9189..11279|hrcV|-|HrcV
Length=696

 Score =  331 bits (1241),  Expect = 1e-91, Method: Compositional matrix adjust.
 Identities = 298/714 (42%), Positives = 498/714 (70%), Gaps = 35/714 (4%)

Query  1    MNKLIDILNKVG----QRKDIMLAVMLLAIVFMMILPLPTALVDVLIGANMSIAVVLLML  56
            MN +I++LN+++     R +I+ AVM++AIVFMMILPLPT LVDVLI+ N+ I+ +L++L
Sbjct  1    MNGIIHLLNRLALAVMGRTEIVGAVMVMAIVFMMILPLPTWLVDVLIALNICISSLLIVL  60

Query  57   AIYITTPLEFSAFPAVllittlfrlslsitttrlillQGDAGQIVYtfgnfvvggnlvvg  116
            A+Y+  PL FS+FPAVLL+TT+FRLSLSI+TTRLILLQ DAG+IV +FG+FVVGGNL VG
Sbjct  61   AMYLPRPLAFSTFPAVLLLTTMFRLSLSIATTRLILLQQDAGHIVEAFGSFVVGGNLAVG  120

Query  117  ivvfliitivQFMVITKGSERVAEVSARFSLDAMPGKQMSIDGDMRAGVIDVHEARHRRS  176
            +V+FLI+TIV+F+VITKGSERVAEV+ARF+LDAMPGKQMSID+D+RA +I+V+EARHRR 
Sbjct  121  LVIFLILTIVNFLVITKGSERVAEVAARFTLDAMPGKQMSIDSDLRANLINVREARHRRE  180

Query  177  LIEKESQMYGSMDGAMKFVKGDSIAglviiivnilggvtigvtQKGMSASEALELFAILT  236
             + KESQ++G+MDGAMKFVKGD+IAGLVI+++N++GG +IGV Q+GM A++A++L+++LT
Sbjct  181  QLSKESQLFGAMDGAMKFVKGDAIAGLVIVFINLIGGFSIGVLQNGMEAGDAMHLYSVLT  240

Query  237  VGDGLVSQIPALFIAITAGIIVTRV---SHEDSADLGSDIGGQVTAQPRALLIGGVLLVL  293
            +GDGL++QIPAL+I++TAG+I+TRV   S+   A++G +I+ Q+T+QP+A +++++ ++ 
Sbjct  241  IGDGLIAQIPALLISLTAGMIITRVAPDSQTADANIGHEIAEQLTSQPKAWVFSSIGMMG  300

Query  294  FALIPGFPKITflvlalvvggggfylfyQQKKQTESESSDLPSFVAQGAGSPAAKPNKPT  353
            F+LIPG P + F  +AL+   +G+  + + +++           + Q++ ++A+K     
Sbjct  301  FGLIPGMPTLVFACIALLCLFSGLIQLWRIRQKE----------LHQDSIGAASKGAPEL  350

Query  354  PSRGSKGKLGEQEEFAMTVPLLIDLDSSLQESLEAVALNDELARVRRALYLDLGVPFPGI  413
             +R    ++     +      L++ +SS Q + E   L + + + R +L  ++G+ +P++
Sbjct  351  NGREDIRRFNPSRAY------LLQCHSSHQGTAELDRLIQGIRQRRNTLVHNFGLTLPSF  404

Query  414  HLRFNDGMKNGEYLIQLQEVPVARGRIEKDKLLVTEGSDQIELLGVPFEQDDDFLPGVSS  473
            ++ F D    +E+ + + EVP  R+ + + +L V +   + +  G P   + D      +
Sbjct  405  DMEFADHFEPDEFRFCVYEVPFIRATFTNARLAVDHREIDED-AGEPGRVERD-----ET  458

Query  474  LWVAQSYQEKL--TASHVGFLTPDRILTFHLSHVLKEYAQDFIGIQETRYLLEQMEGSYS  531
             WV    ++ L     H G  + + IL  ++S+ ++  + +FIG+QE++ +L  +E+  +
Sbjct  459  RWVWVDIDDPLLKEEEHAGVSSLELILE-RMSRAFQATGPQFIGLQESKAILSWLESEQP  517

Query  532  ELVKEAQRIVPLQKMTEILQRLVSEDISIRNLRVILEAMVEWGQKEKDVVQLTEYIRSSL  591
            EL +E QR +PL + + +LQRL +E +S+R++R I E+++E GQ E+D+  LT+ +R +L
Sbjct  518  ELAQELQRTLPLARFAAVLQRLSAELVSLRSVRPIAETLIEQGQHERDLNALTDHVRIAL  577

Query  592  KRYICYKYASGHNMLPAYLLDQSLEDTIRSGIRQTSAGSYLALDPSVTQQFVSDVKQTVG  651
            K  IC +    +N L + L+    E  +R ++RQT   SY+AL+P + + +V +++++  
Sbjct  578  KAQICHQH-CEENTLHTWLVTPETEVLLRDSLRQTQNESYFALEPELGNALVEQLREAFP  636

Query  652  DLSRMPNKPVLVVSMDVRRYVRKLIESEYYDLPVLSFQELTQQINIQPLGRVGM  705
               + + +PVL+V+ D+R  +R L+  ++ ++PVLSF EL   +++Q LGR+++
Sbjct  637  --LQASPRPVLLVAQDLRSPLRSLLTDQFHHVPVLSFAELIPTVQVQVLGRIDL  688

61) A1122_03810 in NC_017168


> AY597281|10|G10|51103113|AAT96256.1|Pseudomonas_viridiflava_ME3.1b|+|9189..11279|hrcV|-|HrcV
Length=696

 Score =  320 bits (1202),  Expect = 1e-88, Method: Compositional matrix adjust.
 Identities = 275/680 (41%), Positives = 469/680 (69%), Gaps = 25/680 (3%)

Query  13   ITARQDIFLAVMLLVAVFMMILPLPTTMVDLLIAINLAFSVILLMISIYLRDPLEFSVFP  72
            + +R +I  AVM++  VFMMILPLPT +VD+LIA+N+ +S +L+++++YL  PL FS FP
Sbjct  15   VMGRTEIVGAVMVMAIVFMMILPLPTWLVDVLIALNICISSLLIVLAMYLPRPLAFSTFP  74

Query  73   SlllittlyrlaltISTTRLVLLQHDAGEIVEAFGQFVVGGNLAVGMiiftiitvvqfiv  132
            ++LL+TT++RL+L+I+TTRL+LLQ+DAG+IVEAFG FVVGGNLAVG++IF I+T+V+F+V
Sbjct  75   AVLLLTTMFRLSLSIATTRLILLQQDAGHIVEAFGSFVVGGNLAVGLVIFLILTIVNFLV  134

Query  133  itKGSERVAEVSARFSLDGMPGKQMSIDGDMRAGAIDSVEAKRLRERVQKESRLFGAMDG  192
            ITKGSERVAEV+ARF+LD+MPGKQMSID+D+RA  I+  EA++ RE++ KES+LFGAMDG
Sbjct  135  ITKGSERVAEVAARFTLDAMPGKQMSIDSDLRANLINVREARHRREQLSKESQLFGAMDG  194

Query  193  AMKFVKGDAiagiiviliniiggitigVMQHKMSAEEAMNTYAVLSIGDGLCAQIPSLLI  252
            AMKFVKGDAIAG+++++IN+IGG++IGV+Q+ M A +AM+ Y+VL+IGDGL AQIP+LLI
Sbjct  195  AMKFVKGDAIAGLVIVFINLIGGFSIGVLQNGMEAGDAMHLYSVLTIGDGLIAQIPALLI  254

Query  253  SITAGIIVTRVPGSNK---QSLANELAVQVGRQPDALWLAAAI-LTVFALLPGFPFLIFI  308
            S+TAG+I+TRV+  ++    ++++E+A Q+  QP A W+ ++I +  F+L+PG P L+F 
Sbjct  255  SLTAGMIITRVAPDSQTADANIGHEIAEQLTSQPKA-WVFSSIGMMGFGLIPGMPTLVFA  313

Query  309  TLaaavaapaFL-LYR-KNRRISQD---GRANGGSEEGGATGQRMTPGAVPLMLHCASNL  363
             +A     ++++ L R +++ + QD   + ++G++E  G  + R    + + +L+C S+ 
Sbjct  314  CIALLCLFSGLIQLWRIRQKELHQDSIGAASKGAPELNGREDIRRFNPSRAYLLQCHSSH  373

Query  364  H-HPHLGRDIDGLRWRW---FEHLGVPLPEVEIRCDPTLAENTLSVQVYQERVLEVVLPP  419
            +  ++L+R I+G+R R+    +++G+ LP  ++     +  + +   VY+   +   +  
Sbjct  374  QGTAELDRLIQGIRQRRNTLVHNFGLTLPSFDMEFADHFEPDEFRFCVYEVPFIRATFTN  433

Query  420  DSLLLT-RPCSSLVTNNQVLGAKMGSFDWLDAKQAMQARTLGIPYVEGHQRIITCLTRVF  478
              L +  R       +   +        W+D  +++  +    + V + + I+  ++R F
Sbjct  434  ARLAVDHREIDEDAGEPGRVERDETRWVWVDIDDPL-LKEEEHAGVSSLELILERMSRAF  492

Query  479  ERYTAEFIGVQETRYLMDAMEGRYGELVKELQRQIPVGKVAEILQRLVEENISIRDLRTI  538
            +   ++FIG+QE++ ++  +E+   EL +ELQR +P+++ A +LQRL  E +S+R +R I
Sbjct  493  QATGPQFIGLQESKAILSWLESEQPELAQELQRTLPLARFAAVLQRLSAELVSLRSVRPI  552

Query  539  FGALVVWAPKEKDIVMLTEYVRIALRRHLCRRFSHNK---TWISVLRLGDGVEHLIRDSI  595
              +L+  +  E+D+  LT+ VRIAL+ ++C++  +++   TW+    +    E L+RDS+
Sbjct  553  AETLIEQGQHERDLNALTDHVRIALKAQICHQHCEENTLHTWL----VTPETEVLLRDSL  608

Query  596  RQTSSGTYSALEERQSLLILNKIKNAFA--ENQDAVLLTTLDVRRFVRKIIERDLFVLPV  653
            RQT + +Y ALE   +  +++++++AF+   +  +VLL + D+R  +R ++  ++  +PV
Sbjct  609  RQTQNESYFALEPELGNALVEQLREAFPLQASPRPVLLVAQDLRSPLRSLLTDQFHHVPV  668

Query  654  LSWQELGDEMNLKVAGTIEL  673
            LS  EL   ++++V G I+L
Sbjct  669  LSFAELIPTVQVQVLGRIDL  688

62) YPC_0742 in NC_017265


> AY597281|10|G10|51103113|AAT96256.1|Pseudomonas_viridiflava_ME3.1b|+|9189..11279|hrcV|-|HrcV
Length=696

 Score =  320 bits (1202),  Expect = 1e-88, Method: Compositional matrix adjust.
 Identities = 275/680 (41%), Positives = 469/680 (69%), Gaps = 25/680 (3%)

Query  13   ITARQDIFLAVMLLVAVFMMILPLPTTMVDLLIAINLAFSVILLMISIYLRDPLEFSVFP  72
            + +R +I  AVM++  VFMMILPLPT +VD+LIA+N+ +S +L+++++YL  PL FS FP
Sbjct  15   VMGRTEIVGAVMVMAIVFMMILPLPTWLVDVLIALNICISSLLIVLAMYLPRPLAFSTFP  74

Query  73   SlllittlyrlaltISTTRLVLLQHDAGEIVEAFGQFVVGGNLAVGMiiftiitvvqfiv  132
            ++LL+TT++RL+L+I+TTRL+LLQ+DAG+IVEAFG FVVGGNLAVG++IF I+T+V+F+V
Sbjct  75   AVLLLTTMFRLSLSIATTRLILLQQDAGHIVEAFGSFVVGGNLAVGLVIFLILTIVNFLV  134

Query  133  itKGSERVAEVSARFSLDGMPGKQMSIDGDMRAGAIDSVEAKRLRERVQKESRLFGAMDG  192
            ITKGSERVAEV+ARF+LD+MPGKQMSID+D+RA  I+  EA++ RE++ KES+LFGAMDG
Sbjct  135  ITKGSERVAEVAARFTLDAMPGKQMSIDSDLRANLINVREARHRREQLSKESQLFGAMDG  194

Query  193  AMKFVKGDAiagiiviliniiggitigVMQHKMSAEEAMNTYAVLSIGDGLCAQIPSLLI  252
            AMKFVKGDAIAG+++++IN+IGG++IGV+Q+ M A +AM+ Y+VL+IGDGL AQIP+LLI
Sbjct  195  AMKFVKGDAIAGLVIVFINLIGGFSIGVLQNGMEAGDAMHLYSVLTIGDGLIAQIPALLI  254

Query  253  SITAGIIVTRVPGSNK---QSLANELAVQVGRQPDALWLAAAI-LTVFALLPGFPFLIFI  308
            S+TAG+I+TRV+  ++    ++++E+A Q+  QP A W+ ++I +  F+L+PG P L+F 
Sbjct  255  SLTAGMIITRVAPDSQTADANIGHEIAEQLTSQPKA-WVFSSIGMMGFGLIPGMPTLVFA  313

Query  309  TLaaavaapaFL-LYR-KNRRISQD---GRANGGSEEGGATGQRMTPGAVPLMLHCASNL  363
             +A     ++++ L R +++ + QD   + ++G++E  G  + R    + + +L+C S+ 
Sbjct  314  CIALLCLFSGLIQLWRIRQKELHQDSIGAASKGAPELNGREDIRRFNPSRAYLLQCHSSH  373

Query  364  H-HPHLGRDIDGLRWRW---FEHLGVPLPEVEIRCDPTLAENTLSVQVYQERVLEVVLPP  419
            +  ++L+R I+G+R R+    +++G+ LP  ++     +  + +   VY+   +   +  
Sbjct  374  QGTAELDRLIQGIRQRRNTLVHNFGLTLPSFDMEFADHFEPDEFRFCVYEVPFIRATFTN  433

Query  420  DSLLLT-RPCSSLVTNNQVLGAKMGSFDWLDAKQAMQARTLGIPYVEGHQRIITCLTRVF  478
              L +  R       +   +        W+D  +++  +    + V + + I+  ++R F
Sbjct  434  ARLAVDHREIDEDAGEPGRVERDETRWVWVDIDDPL-LKEEEHAGVSSLELILERMSRAF  492

Query  479  ERYTAEFIGVQETRYLMDAMEGRYGELVKELQRQIPVGKVAEILQRLVEENISIRDLRTI  538
            +   ++FIG+QE++ ++  +E+   EL +ELQR +P+++ A +LQRL  E +S+R +R I
Sbjct  493  QATGPQFIGLQESKAILSWLESEQPELAQELQRTLPLARFAAVLQRLSAELVSLRSVRPI  552

Query  539  FGALVVWAPKEKDIVMLTEYVRIALRRHLCRRFSHNK---TWISVLRLGDGVEHLIRDSI  595
              +L+  +  E+D+  LT+ VRIAL+ ++C++  +++   TW+    +    E L+RDS+
Sbjct  553  AETLIEQGQHERDLNALTDHVRIALKAQICHQHCEENTLHTWL----VTPETEVLLRDSL  608

Query  596  RQTSSGTYSALEERQSLLILNKIKNAFA--ENQDAVLLTTLDVRRFVRKIIERDLFVLPV  653
            RQT + +Y ALE   +  +++++++AF+   +  +VLL + D+R  +R ++  ++  +PV
Sbjct  609  RQTQNESYFALEPELGNALVEQLREAFPLQASPRPVLLVAQDLRSPLRSLLTDQFHHVPV  668

Query  654  LSWQELGDEMNLKVAGTIEL  673
            LS  EL   ++++V G I+L
Sbjct  669  LSFAELIPTVQVQVLGRIDL  688

63) YPO0266 in NC_003143


> AY597281|10|G10|51103113|AAT96256.1|Pseudomonas_viridiflava_ME3.1b|+|9189..11279|hrcV|-|HrcV
Length=696

 Score =  320 bits (1202),  Expect = 1e-88, Method: Compositional matrix adjust.
 Identities = 275/680 (41%), Positives = 469/680 (69%), Gaps = 25/680 (3%)

Query  13   ITARQDIFLAVMLLVAVFMMILPLPTTMVDLLIAINLAFSVILLMISIYLRDPLEFSVFP  72
            + +R +I  AVM++  VFMMILPLPT +VD+LIA+N+ +S +L+++++YL  PL FS FP
Sbjct  15   VMGRTEIVGAVMVMAIVFMMILPLPTWLVDVLIALNICISSLLIVLAMYLPRPLAFSTFP  74

Query  73   SlllittlyrlaltISTTRLVLLQHDAGEIVEAFGQFVVGGNLAVGMiiftiitvvqfiv  132
            ++LL+TT++RL+L+I+TTRL+LLQ+DAG+IVEAFG FVVGGNLAVG++IF I+T+V+F+V
Sbjct  75   AVLLLTTMFRLSLSIATTRLILLQQDAGHIVEAFGSFVVGGNLAVGLVIFLILTIVNFLV  134

Query  133  itKGSERVAEVSARFSLDGMPGKQMSIDGDMRAGAIDSVEAKRLRERVQKESRLFGAMDG  192
            ITKGSERVAEV+ARF+LD+MPGKQMSID+D+RA  I+  EA++ RE++ KES+LFGAMDG
Sbjct  135  ITKGSERVAEVAARFTLDAMPGKQMSIDSDLRANLINVREARHRREQLSKESQLFGAMDG  194

Query  193  AMKFVKGDAiagiiviliniiggitigVMQHKMSAEEAMNTYAVLSIGDGLCAQIPSLLI  252
            AMKFVKGDAIAG+++++IN+IGG++IGV+Q+ M A +AM+ Y+VL+IGDGL AQIP+LLI
Sbjct  195  AMKFVKGDAIAGLVIVFINLIGGFSIGVLQNGMEAGDAMHLYSVLTIGDGLIAQIPALLI  254

Query  253  SITAGIIVTRVPGSNK---QSLANELAVQVGRQPDALWLAAAI-LTVFALLPGFPFLIFI  308
            S+TAG+I+TRV+  ++    ++++E+A Q+  QP A W+ ++I +  F+L+PG P L+F 
Sbjct  255  SLTAGMIITRVAPDSQTADANIGHEIAEQLTSQPKA-WVFSSIGMMGFGLIPGMPTLVFA  313

Query  309  TLaaavaapaFL-LYR-KNRRISQD---GRANGGSEEGGATGQRMTPGAVPLMLHCASNL  363
             +A     ++++ L R +++ + QD   + ++G++E  G  + R    + + +L+C S+ 
Sbjct  314  CIALLCLFSGLIQLWRIRQKELHQDSIGAASKGAPELNGREDIRRFNPSRAYLLQCHSSH  373

Query  364  H-HPHLGRDIDGLRWRW---FEHLGVPLPEVEIRCDPTLAENTLSVQVYQERVLEVVLPP  419
            +  ++L+R I+G+R R+    +++G+ LP  ++     +  + +   VY+   +   +  
Sbjct  374  QGTAELDRLIQGIRQRRNTLVHNFGLTLPSFDMEFADHFEPDEFRFCVYEVPFIRATFTN  433

Query  420  DSLLLT-RPCSSLVTNNQVLGAKMGSFDWLDAKQAMQARTLGIPYVEGHQRIITCLTRVF  478
              L +  R       +   +        W+D  +++  +    + V + + I+  ++R F
Sbjct  434  ARLAVDHREIDEDAGEPGRVERDETRWVWVDIDDPL-LKEEEHAGVSSLELILERMSRAF  492

Query  479  ERYTAEFIGVQETRYLMDAMEGRYGELVKELQRQIPVGKVAEILQRLVEENISIRDLRTI  538
            +   ++FIG+QE++ ++  +E+   EL +ELQR +P+++ A +LQRL  E +S+R +R I
Sbjct  493  QATGPQFIGLQESKAILSWLESEQPELAQELQRTLPLARFAAVLQRLSAELVSLRSVRPI  552

Query  539  FGALVVWAPKEKDIVMLTEYVRIALRRHLCRRFSHNK---TWISVLRLGDGVEHLIRDSI  595
              +L+  +  E+D+  LT+ VRIAL+ ++C++  +++   TW+    +    E L+RDS+
Sbjct  553  AETLIEQGQHERDLNALTDHVRIALKAQICHQHCEENTLHTWL----VTPETEVLLRDSL  608

Query  596  RQTSSGTYSALEERQSLLILNKIKNAFA--ENQDAVLLTTLDVRRFVRKIIERDLFVLPV  653
            RQT + +Y ALE   +  +++++++AF+   +  +VLL + D+R  +R ++  ++  +PV
Sbjct  609  RQTQNESYFALEPELGNALVEQLREAFPLQASPRPVLLVAQDLRSPLRSLLTDQFHHVPV  668

Query  654  LSWQELGDEMNLKVAGTIEL  673
            LS  EL   ++++V G I+L
Sbjct  669  LSFAELIPTVQVQVLGRIDL  688

64) YPD4_0230 in NC_017154


> AY597281|10|G10|51103113|AAT96256.1|Pseudomonas_viridiflava_ME3.1b|+|9189..11279|hrcV|-|HrcV
Length=696

 Score =  320 bits (1202),  Expect = 1e-88, Method: Compositional matrix adjust.
 Identities = 275/680 (41%), Positives = 469/680 (69%), Gaps = 25/680 (3%)

Query  13   ITARQDIFLAVMLLVAVFMMILPLPTTMVDLLIAINLAFSVILLMISIYLRDPLEFSVFP  72
            + +R +I  AVM++  VFMMILPLPT +VD+LIA+N+ +S +L+++++YL  PL FS FP
Sbjct  15   VMGRTEIVGAVMVMAIVFMMILPLPTWLVDVLIALNICISSLLIVLAMYLPRPLAFSTFP  74

Query  73   SlllittlyrlaltISTTRLVLLQHDAGEIVEAFGQFVVGGNLAVGMiiftiitvvqfiv  132
            ++LL+TT++RL+L+I+TTRL+LLQ+DAG+IVEAFG FVVGGNLAVG++IF I+T+V+F+V
Sbjct  75   AVLLLTTMFRLSLSIATTRLILLQQDAGHIVEAFGSFVVGGNLAVGLVIFLILTIVNFLV  134

Query  133  itKGSERVAEVSARFSLDGMPGKQMSIDGDMRAGAIDSVEAKRLRERVQKESRLFGAMDG  192
            ITKGSERVAEV+ARF+LD+MPGKQMSID+D+RA  I+  EA++ RE++ KES+LFGAMDG
Sbjct  135  ITKGSERVAEVAARFTLDAMPGKQMSIDSDLRANLINVREARHRREQLSKESQLFGAMDG  194

Query  193  AMKFVKGDAiagiiviliniiggitigVMQHKMSAEEAMNTYAVLSIGDGLCAQIPSLLI  252
            AMKFVKGDAIAG+++++IN+IGG++IGV+Q+ M A +AM+ Y+VL+IGDGL AQIP+LLI
Sbjct  195  AMKFVKGDAIAGLVIVFINLIGGFSIGVLQNGMEAGDAMHLYSVLTIGDGLIAQIPALLI  254

Query  253  SITAGIIVTRVPGSNK---QSLANELAVQVGRQPDALWLAAAI-LTVFALLPGFPFLIFI  308
            S+TAG+I+TRV+  ++    ++++E+A Q+  QP A W+ ++I +  F+L+PG P L+F 
Sbjct  255  SLTAGMIITRVAPDSQTADANIGHEIAEQLTSQPKA-WVFSSIGMMGFGLIPGMPTLVFA  313

Query  309  TLaaavaapaFL-LYR-KNRRISQD---GRANGGSEEGGATGQRMTPGAVPLMLHCASNL  363
             +A     ++++ L R +++ + QD   + ++G++E  G  + R    + + +L+C S+ 
Sbjct  314  CIALLCLFSGLIQLWRIRQKELHQDSIGAASKGAPELNGREDIRRFNPSRAYLLQCHSSH  373

Query  364  H-HPHLGRDIDGLRWRW---FEHLGVPLPEVEIRCDPTLAENTLSVQVYQERVLEVVLPP  419
            +  ++L+R I+G+R R+    +++G+ LP  ++     +  + +   VY+   +   +  
Sbjct  374  QGTAELDRLIQGIRQRRNTLVHNFGLTLPSFDMEFADHFEPDEFRFCVYEVPFIRATFTN  433

Query  420  DSLLLT-RPCSSLVTNNQVLGAKMGSFDWLDAKQAMQARTLGIPYVEGHQRIITCLTRVF  478
              L +  R       +   +        W+D  +++  +    + V + + I+  ++R F
Sbjct  434  ARLAVDHREIDEDAGEPGRVERDETRWVWVDIDDPL-LKEEEHAGVSSLELILERMSRAF  492

Query  479  ERYTAEFIGVQETRYLMDAMEGRYGELVKELQRQIPVGKVAEILQRLVEENISIRDLRTI  538
            +   ++FIG+QE++ ++  +E+   EL +ELQR +P+++ A +LQRL  E +S+R +R I
Sbjct  493  QATGPQFIGLQESKAILSWLESEQPELAQELQRTLPLARFAAVLQRLSAELVSLRSVRPI  552

Query  539  FGALVVWAPKEKDIVMLTEYVRIALRRHLCRRFSHNK---TWISVLRLGDGVEHLIRDSI  595
              +L+  +  E+D+  LT+ VRIAL+ ++C++  +++   TW+    +    E L+RDS+
Sbjct  553  AETLIEQGQHERDLNALTDHVRIALKAQICHQHCEENTLHTWL----VTPETEVLLRDSL  608

Query  596  RQTSSGTYSALEERQSLLILNKIKNAFA--ENQDAVLLTTLDVRRFVRKIIERDLFVLPV  653
            RQT + +Y ALE   +  +++++++AF+   +  +VLL + D+R  +R ++  ++  +PV
Sbjct  609  RQTQNESYFALEPELGNALVEQLREAFPLQASPRPVLLVAQDLRSPLRSLLTDQFHHVPV  668

Query  654  LSWQELGDEMNLKVAGTIEL  673
            LS  EL   ++++V G I+L
Sbjct  669  LSFAELIPTVQVQVLGRIDL  688

65) YPD8_0235 in NC_017160


> AY597281|10|G10|51103113|AAT96256.1|Pseudomonas_viridiflava_ME3.1b|+|9189..11279|hrcV|-|HrcV
Length=696

 Score =  320 bits (1202),  Expect = 1e-88, Method: Compositional matrix adjust.
 Identities = 275/680 (41%), Positives = 469/680 (69%), Gaps = 25/680 (3%)

Query  13   ITARQDIFLAVMLLVAVFMMILPLPTTMVDLLIAINLAFSVILLMISIYLRDPLEFSVFP  72
            + +R +I  AVM++  VFMMILPLPT +VD+LIA+N+ +S +L+++++YL  PL FS FP
Sbjct  15   VMGRTEIVGAVMVMAIVFMMILPLPTWLVDVLIALNICISSLLIVLAMYLPRPLAFSTFP  74

Query  73   SlllittlyrlaltISTTRLVLLQHDAGEIVEAFGQFVVGGNLAVGMiiftiitvvqfiv  132
            ++LL+TT++RL+L+I+TTRL+LLQ+DAG+IVEAFG FVVGGNLAVG++IF I+T+V+F+V
Sbjct  75   AVLLLTTMFRLSLSIATTRLILLQQDAGHIVEAFGSFVVGGNLAVGLVIFLILTIVNFLV  134

Query  133  itKGSERVAEVSARFSLDGMPGKQMSIDGDMRAGAIDSVEAKRLRERVQKESRLFGAMDG  192
            ITKGSERVAEV+ARF+LD+MPGKQMSID+D+RA  I+  EA++ RE++ KES+LFGAMDG
Sbjct  135  ITKGSERVAEVAARFTLDAMPGKQMSIDSDLRANLINVREARHRREQLSKESQLFGAMDG  194

Query  193  AMKFVKGDAiagiiviliniiggitigVMQHKMSAEEAMNTYAVLSIGDGLCAQIPSLLI  252
            AMKFVKGDAIAG+++++IN+IGG++IGV+Q+ M A +AM+ Y+VL+IGDGL AQIP+LLI
Sbjct  195  AMKFVKGDAIAGLVIVFINLIGGFSIGVLQNGMEAGDAMHLYSVLTIGDGLIAQIPALLI  254

Query  253  SITAGIIVTRVPGSNK---QSLANELAVQVGRQPDALWLAAAI-LTVFALLPGFPFLIFI  308
            S+TAG+I+TRV+  ++    ++++E+A Q+  QP A W+ ++I +  F+L+PG P L+F 
Sbjct  255  SLTAGMIITRVAPDSQTADANIGHEIAEQLTSQPKA-WVFSSIGMMGFGLIPGMPTLVFA  313

Query  309  TLaaavaapaFL-LYR-KNRRISQD---GRANGGSEEGGATGQRMTPGAVPLMLHCASNL  363
             +A     ++++ L R +++ + QD   + ++G++E  G  + R    + + +L+C S+ 
Sbjct  314  CIALLCLFSGLIQLWRIRQKELHQDSIGAASKGAPELNGREDIRRFNPSRAYLLQCHSSH  373

Query  364  H-HPHLGRDIDGLRWRW---FEHLGVPLPEVEIRCDPTLAENTLSVQVYQERVLEVVLPP  419
            +  ++L+R I+G+R R+    +++G+ LP  ++     +  + +   VY+   +   +  
Sbjct  374  QGTAELDRLIQGIRQRRNTLVHNFGLTLPSFDMEFADHFEPDEFRFCVYEVPFIRATFTN  433

Query  420  DSLLLT-RPCSSLVTNNQVLGAKMGSFDWLDAKQAMQARTLGIPYVEGHQRIITCLTRVF  478
              L +  R       +   +        W+D  +++  +    + V + + I+  ++R F
Sbjct  434  ARLAVDHREIDEDAGEPGRVERDETRWVWVDIDDPL-LKEEEHAGVSSLELILERMSRAF  492

Query  479  ERYTAEFIGVQETRYLMDAMEGRYGELVKELQRQIPVGKVAEILQRLVEENISIRDLRTI  538
            +   ++FIG+QE++ ++  +E+   EL +ELQR +P+++ A +LQRL  E +S+R +R I
Sbjct  493  QATGPQFIGLQESKAILSWLESEQPELAQELQRTLPLARFAAVLQRLSAELVSLRSVRPI  552

Query  539  FGALVVWAPKEKDIVMLTEYVRIALRRHLCRRFSHNK---TWISVLRLGDGVEHLIRDSI  595
              +L+  +  E+D+  LT+ VRIAL+ ++C++  +++   TW+    +    E L+RDS+
Sbjct  553  AETLIEQGQHERDLNALTDHVRIALKAQICHQHCEENTLHTWL----VTPETEVLLRDSL  608

Query  596  RQTSSGTYSALEERQSLLILNKIKNAFA--ENQDAVLLTTLDVRRFVRKIIERDLFVLPV  653
            RQT + +Y ALE   +  +++++++AF+   +  +VLL + D+R  +R ++  ++  +PV
Sbjct  609  RQTQNESYFALEPELGNALVEQLREAFPLQASPRPVLLVAQDLRSPLRSLLTDQFHHVPV  668

Query  654  LSWQELGDEMNLKVAGTIEL  673
            LS  EL   ++++V G I+L
Sbjct  669  LSFAELIPTVQVQVLGRIDL  688

66) YPZ3_0228 in NC_014029


> AY597281|10|G10|51103113|AAT96256.1|Pseudomonas_viridiflava_ME3.1b|+|9189..11279|hrcV|-|HrcV
Length=696

 Score =  320 bits (1202),  Expect = 1e-88, Method: Compositional matrix adjust.
 Identities = 275/680 (41%), Positives = 469/680 (69%), Gaps = 25/680 (3%)

Query  13   ITARQDIFLAVMLLVAVFMMILPLPTTMVDLLIAINLAFSVILLMISIYLRDPLEFSVFP  72
            + +R +I  AVM++  VFMMILPLPT +VD+LIA+N+ +S +L+++++YL  PL FS FP
Sbjct  15   VMGRTEIVGAVMVMAIVFMMILPLPTWLVDVLIALNICISSLLIVLAMYLPRPLAFSTFP  74

Query  73   SlllittlyrlaltISTTRLVLLQHDAGEIVEAFGQFVVGGNLAVGMiiftiitvvqfiv  132
            ++LL+TT++RL+L+I+TTRL+LLQ+DAG+IVEAFG FVVGGNLAVG++IF I+T+V+F+V
Sbjct  75   AVLLLTTMFRLSLSIATTRLILLQQDAGHIVEAFGSFVVGGNLAVGLVIFLILTIVNFLV  134

Query  133  itKGSERVAEVSARFSLDGMPGKQMSIDGDMRAGAIDSVEAKRLRERVQKESRLFGAMDG  192
            ITKGSERVAEV+ARF+LD+MPGKQMSID+D+RA  I+  EA++ RE++ KES+LFGAMDG
Sbjct  135  ITKGSERVAEVAARFTLDAMPGKQMSIDSDLRANLINVREARHRREQLSKESQLFGAMDG  194

Query  193  AMKFVKGDAiagiiviliniiggitigVMQHKMSAEEAMNTYAVLSIGDGLCAQIPSLLI  252
            AMKFVKGDAIAG+++++IN+IGG++IGV+Q+ M A +AM+ Y+VL+IGDGL AQIP+LLI
Sbjct  195  AMKFVKGDAIAGLVIVFINLIGGFSIGVLQNGMEAGDAMHLYSVLTIGDGLIAQIPALLI  254

Query  253  SITAGIIVTRVPGSNK---QSLANELAVQVGRQPDALWLAAAI-LTVFALLPGFPFLIFI  308
            S+TAG+I+TRV+  ++    ++++E+A Q+  QP A W+ ++I +  F+L+PG P L+F 
Sbjct  255  SLTAGMIITRVAPDSQTADANIGHEIAEQLTSQPKA-WVFSSIGMMGFGLIPGMPTLVFA  313

Query  309  TLaaavaapaFL-LYR-KNRRISQD---GRANGGSEEGGATGQRMTPGAVPLMLHCASNL  363
             +A     ++++ L R +++ + QD   + ++G++E  G  + R    + + +L+C S+ 
Sbjct  314  CIALLCLFSGLIQLWRIRQKELHQDSIGAASKGAPELNGREDIRRFNPSRAYLLQCHSSH  373

Query  364  H-HPHLGRDIDGLRWRW---FEHLGVPLPEVEIRCDPTLAENTLSVQVYQERVLEVVLPP  419
            +  ++L+R I+G+R R+    +++G+ LP  ++     +  + +   VY+   +   +  
Sbjct  374  QGTAELDRLIQGIRQRRNTLVHNFGLTLPSFDMEFADHFEPDEFRFCVYEVPFIRATFTN  433

Query  420  DSLLLT-RPCSSLVTNNQVLGAKMGSFDWLDAKQAMQARTLGIPYVEGHQRIITCLTRVF  478
              L +  R       +   +        W+D  +++  +    + V + + I+  ++R F
Sbjct  434  ARLAVDHREIDEDAGEPGRVERDETRWVWVDIDDPL-LKEEEHAGVSSLELILERMSRAF  492

Query  479  ERYTAEFIGVQETRYLMDAMEGRYGELVKELQRQIPVGKVAEILQRLVEENISIRDLRTI  538
            +   ++FIG+QE++ ++  +E+   EL +ELQR +P+++ A +LQRL  E +S+R +R I
Sbjct  493  QATGPQFIGLQESKAILSWLESEQPELAQELQRTLPLARFAAVLQRLSAELVSLRSVRPI  552

Query  539  FGALVVWAPKEKDIVMLTEYVRIALRRHLCRRFSHNK---TWISVLRLGDGVEHLIRDSI  595
              +L+  +  E+D+  LT+ VRIAL+ ++C++  +++   TW+    +    E L+RDS+
Sbjct  553  AETLIEQGQHERDLNALTDHVRIALKAQICHQHCEENTLHTWL----VTPETEVLLRDSL  608

Query  596  RQTSSGTYSALEERQSLLILNKIKNAFA--ENQDAVLLTTLDVRRFVRKIIERDLFVLPV  653
            RQT + +Y ALE   +  +++++++AF+   +  +VLL + D+R  +R ++  ++  +PV
Sbjct  609  RQTQNESYFALEPELGNALVEQLREAFPLQASPRPVLLVAQDLRSPLRSLLTDQFHHVPV  668

Query  654  LSWQELGDEMNLKVAGTIEL  673
            LS  EL   ++++V G I+L
Sbjct  669  LSFAELIPTVQVQVLGRIDL  688

67) YPA_4017 in NC_008150


> AY597281|10|G10|51103113|AAT96256.1|Pseudomonas_viridiflava_ME3.1b|+|9189..11279|hrcV|-|HrcV
Length=696

 Score =  320 bits (1199),  Expect = 2e-88, Method: Compositional matrix adjust.
 Identities = 275/680 (41%), Positives = 468/680 (69%), Gaps = 25/680 (3%)

Query  2    ITARQDIFLAVMLLVAVFMMILPLPTTMVDLLIAINLAFSVILLMISIYLRDPLEFSVFP  61
            + +R +I  AVM++  VFMMILPLPT +VD+LIA+N+ +S +L+++++YL  PL FS FP
Sbjct  15   VMGRTEIVGAVMVMAIVFMMILPLPTWLVDVLIALNICISSLLIVLAMYLPRPLAFSTFP  74

Query  62   SlllittlyrlaltISTTRLVLLQHDAGEIVEAFGQFVVGGNLAVGMiiftiitvvqfiv  121
            ++LL+TT++RL+L+I+TTRL+LLQ+DAG+IVEAFG FVVGGNLAVG++IF I+T+V+F+V
Sbjct  75   AVLLLTTMFRLSLSIATTRLILLQQDAGHIVEAFGSFVVGGNLAVGLVIFLILTIVNFLV  134

Query  122  itKGSERVAEVSARFSLDGMPGKQMSIDGDMRAGAIDSVEAKRLRERVQKESRLFGAMDG  181
            ITKGSERVAEV+ARF+LD+MPGKQMSID+D+RA  I+  EA++ RE++ KES+LFGAMDG
Sbjct  135  ITKGSERVAEVAARFTLDAMPGKQMSIDSDLRANLINVREARHRREQLSKESQLFGAMDG  194

Query  182  AMKFVKGDAiagiiviliniiggitigVMQHKMSAEEAMNTYAVLSIGDGLCAQIPSLLI  241
            AMKFVKGDAIAG+++++IN+IGG++IGV+Q+ M A +AM+ Y+VL+IGDGL AQIP+LLI
Sbjct  195  AMKFVKGDAIAGLVIVFINLIGGFSIGVLQNGMEAGDAMHLYSVLTIGDGLIAQIPALLI  254

Query  242  SITAGIIVTRVPG---SNKQSLANELAVQVGRQPDALWLAAAI-LTVFALLPGFPFLIFI  297
            S+TAG+I+TRV+    +   ++++E+A Q+  QP A W+ ++I +  F+L+PG P L+F 
Sbjct  255  SLTAGMIITRVAPDSQTADANIGHEIAEQLTSQPKA-WVFSSIGMMGFGLIPGMPTLVFA  313

Query  298  TLaaavaapaFL-LYR-KNRRISQD---GRANGGSEEGGATGQRMTPGAVPLMLHCASNL  352
             +A     ++++ L R +++ + QD   + ++G++E  G  + R    + + +L+C S+ 
Sbjct  314  CIALLCLFSGLIQLWRIRQKELHQDSIGAASKGAPELNGREDIRRFNPSRAYLLQCHSSH  373

Query  353  H-HPHLGRDIDGLRWRW---FEHLGVPLPEVEIRCDPTLAENTLSVQVYQERVLEVVLPP  408
            +  ++L+R I+G+R R+    +++G+ LP  ++     +  + +   VY+   +   +  
Sbjct  374  QGTAELDRLIQGIRQRRNTLVHNFGLTLPSFDMEFADHFEPDEFRFCVYEVPFIRATFTN  433

Query  409  DSLLLT-RPCSSLVTNNQVLGAKMGSFDWLDAKQAMQARTLGIPYVEGHQRIITCLTRVF  467
              L +  R       +   +        W+D  +++  +    + V + + I+  ++R F
Sbjct  434  ARLAVDHREIDEDAGEPGRVERDETRWVWVDIDDPL-LKEEEHAGVSSLELILERMSRAF  492

Query  468  ERYTAEFIGVQETRYLMDAMEGRYGELVKELQRQIPVGKVAEILQRLVEENISIRDLRTI  527
            +   ++FIG+QE++ ++  +E+   EL +ELQR +P+++ A +LQRL  E +S+R +R I
Sbjct  493  QATGPQFIGLQESKAILSWLESEQPELAQELQRTLPLARFAAVLQRLSAELVSLRSVRPI  552

Query  528  FGALVVWAPKEKDIVMLTEYVRIALRRHLCRRFSHNK---TWISVLRLGDGVEHLIRDSI  584
              +L+  +  E+D+  LT+ VRIAL+ ++C++  +++   TW+    +    E L+RDS+
Sbjct  553  AETLIEQGQHERDLNALTDHVRIALKAQICHQHCEENTLHTWL----VTPETEVLLRDSL  608

Query  585  RQTSSGTYSALEERQSLLILNKIKNAFA--ENQDAVLLTTLDVRRFVRKIIERDLFVLPV  642
            RQT + +Y ALE   +  +++++++AF+   +  +VLL + D+R  +R ++  ++  +PV
Sbjct  609  RQTQNESYFALEPELGNALVEQLREAFPLQASPRPVLLVAQDLRSPLRSLLTDQFHHVPV  668

Query  643  LSWQELGDEMNLKVAGTIEL  662
            LS  EL   ++++V G I+L
Sbjct  669  LSFAELIPTVQVQVLGRIDL  688

68) flhA1 in NC_005810


> AY597281|10|G10|51103113|AAT96256.1|Pseudomonas_viridiflava_ME3.1b|+|9189..11279|hrcV|-|HrcV
Length=696

 Score =  320 bits (1199),  Expect = 2e-88, Method: Compositional matrix adjust.
 Identities = 275/680 (41%), Positives = 469/680 (69%), Gaps = 25/680 (3%)

Query  15   ITARQDIFLAVMLLVAVFMMILPLPTTMVDLLIAINLAFSVILLMISIYLRDPLEFSVFP  74
            + +R +I  AVM++  VFMMILPLPT +VD+LIA+N+ +S +L+++++YL  PL FS FP
Sbjct  15   VMGRTEIVGAVMVMAIVFMMILPLPTWLVDVLIALNICISSLLIVLAMYLPRPLAFSTFP  74

Query  75   SlllittlyrlaltISTTRLVLLQHDAGEIVEAFGQFVVGGNLAVGMiiftiitvvqfiv  134
            ++LL+TT++RL+L+I+TTRL+LLQ+DAG+IVEAFG FVVGGNLAVG++IF I+T+V+F+V
Sbjct  75   AVLLLTTMFRLSLSIATTRLILLQQDAGHIVEAFGSFVVGGNLAVGLVIFLILTIVNFLV  134

Query  135  itKGSERVAEVSARFSLDGMPGKQMSIDGDMRAGAIDSVEAKRLRERVQKESRLFGAMDG  194
            ITKGSERVAEV+ARF+LD+MPGKQMSID+D+RA  I+  EA++ RE++ KES+LFGAMDG
Sbjct  135  ITKGSERVAEVAARFTLDAMPGKQMSIDSDLRANLINVREARHRREQLSKESQLFGAMDG  194

Query  195  AMKFVKGDAiagiiviliniiggitigVMQHKMSAEEAMNTYAVLSIGDGLCAQIPSLLI  254
            AMKFVKGDAIAG+++++IN+IGG++IGV+Q+ M A +AM+ Y+VL+IGDGL AQIP+LLI
Sbjct  195  AMKFVKGDAIAGLVIVFINLIGGFSIGVLQNGMEAGDAMHLYSVLTIGDGLIAQIPALLI  254

Query  255  SITAGIIVTRVPGSNK---QSLANELAVQVGRQPDALWLAAAI-LTVFALLPGFPFLIFI  310
            S+TAG+I+TRV+  ++    ++++E+A Q+  QP A W+ ++I +  F+L+PG P L+F 
Sbjct  255  SLTAGMIITRVAPDSQTADANIGHEIAEQLTSQPKA-WVFSSIGMMGFGLIPGMPTLVFA  313

Query  311  TLaaavaapaFL-LYR-KNRRISQD---GRANGGSEEGGATGQRMTPGAVPLMLHCASNL  365
             +A     ++++ L R +++ + QD   + ++G++E  G  + R    + + +L+C S+ 
Sbjct  314  CIALLCLFSGLIQLWRIRQKELHQDSIGAASKGAPELNGREDIRRFNPSRAYLLQCHSSH  373

Query  366  H-HPHLGRDIDGLRWRW---FEHLGVPLPEVEIRCDPTLAENTLSVQVYQERVLEVVLPP  421
            +  ++L+R I+G+R R+    +++G+ LP  ++     +  + +   VY+   +   +  
Sbjct  374  QGTAELDRLIQGIRQRRNTLVHNFGLTLPSFDMEFADHFEPDEFRFCVYEVPFIRATFTN  433

Query  422  DSLLLT-RPCSSLVTNNQVLGAKMGSFDWLDAKQAMQARTLGIPYVEGHQRIITCLTRVF  480
              L +  R       +   +        W+D  +++  +    + V + + I+  ++R F
Sbjct  434  ARLAVDHREIDEDAGEPGRVERDETRWVWVDIDDPL-LKEEEHAGVSSLELILERMSRAF  492

Query  481  ERYTAEFIGVQETRYLMDAMEGRYGELVKELQRQIPVGKVAEILQRLVEENISIRDLRTI  540
            +   ++FIG+QE++ ++  +E+   EL +ELQR +P+++ A +LQRL  E +S+R +R I
Sbjct  493  QATGPQFIGLQESKAILSWLESEQPELAQELQRTLPLARFAAVLQRLSAELVSLRSVRPI  552

Query  541  FGALVVWAPKEKDIVMLTEYVRIALRRHLCRRFSHNK---TWISVLRLGDGVEHLIRDSI  597
              +L+  +  E+D+  LT+ VRIAL+ ++C++  +++   TW+    +    E L+RDS+
Sbjct  553  AETLIEQGQHERDLNALTDHVRIALKAQICHQHCEENTLHTWL----VTPETEVLLRDSL  608

Query  598  RQTSSGTYSALEERQSLLILNKIKNAFA--ENQDAVLLTTLDVRRFVRKIIERDLFVLPV  655
            RQT + +Y ALE   +  +++++++AF+   +  +VLL + D+R  +R ++  ++  +PV
Sbjct  609  RQTQNESYFALEPELGNALVEQLREAFPLQASPRPVLLVAQDLRSPLRSLLTDQFHHVPV  668

Query  656  LSWQELGDEMNLKVAGTIEL  675
            LS  EL   ++++V G I+L
Sbjct  669  LSFAELIPTVQVQVLGRIDL  688

69) y0525 in NC_004088


> AY597281|10|G10|51103113|AAT96256.1|Pseudomonas_viridiflava_ME3.1b|+|9189..11279|hrcV|-|HrcV
Length=696

 Score =  320 bits (1199),  Expect = 2e-88, Method: Compositional matrix adjust.
 Identities = 275/680 (41%), Positives = 469/680 (69%), Gaps = 25/680 (3%)

Query  15   ITARQDIFLAVMLLVAVFMMILPLPTTMVDLLIAINLAFSVILLMISIYLRDPLEFSVFP  74
            + +R +I  AVM++  VFMMILPLPT +VD+LIA+N+ +S +L+++++YL  PL FS FP
Sbjct  15   VMGRTEIVGAVMVMAIVFMMILPLPTWLVDVLIALNICISSLLIVLAMYLPRPLAFSTFP  74

Query  75   SlllittlyrlaltISTTRLVLLQHDAGEIVEAFGQFVVGGNLAVGMiiftiitvvqfiv  134
            ++LL+TT++RL+L+I+TTRL+LLQ+DAG+IVEAFG FVVGGNLAVG++IF I+T+V+F+V
Sbjct  75   AVLLLTTMFRLSLSIATTRLILLQQDAGHIVEAFGSFVVGGNLAVGLVIFLILTIVNFLV  134

Query  135  itKGSERVAEVSARFSLDGMPGKQMSIDGDMRAGAIDSVEAKRLRERVQKESRLFGAMDG  194
            ITKGSERVAEV+ARF+LD+MPGKQMSID+D+RA  I+  EA++ RE++ KES+LFGAMDG
Sbjct  135  ITKGSERVAEVAARFTLDAMPGKQMSIDSDLRANLINVREARHRREQLSKESQLFGAMDG  194

Query  195  AMKFVKGDAiagiiviliniiggitigVMQHKMSAEEAMNTYAVLSIGDGLCAQIPSLLI  254
            AMKFVKGDAIAG+++++IN+IGG++IGV+Q+ M A +AM+ Y+VL+IGDGL AQIP+LLI
Sbjct  195  AMKFVKGDAIAGLVIVFINLIGGFSIGVLQNGMEAGDAMHLYSVLTIGDGLIAQIPALLI  254

Query  255  SITAGIIVTRVPGSNK---QSLANELAVQVGRQPDALWLAAAI-LTVFALLPGFPFLIFI  310
            S+TAG+I+TRV+  ++    ++++E+A Q+  QP A W+ ++I +  F+L+PG P L+F 
Sbjct  255  SLTAGMIITRVAPDSQTADANIGHEIAEQLTSQPKA-WVFSSIGMMGFGLIPGMPTLVFA  313

Query  311  TLaaavaapaFL-LYR-KNRRISQD---GRANGGSEEGGATGQRMTPGAVPLMLHCASNL  365
             +A     ++++ L R +++ + QD   + ++G++E  G  + R    + + +L+C S+ 
Sbjct  314  CIALLCLFSGLIQLWRIRQKELHQDSIGAASKGAPELNGREDIRRFNPSRAYLLQCHSSH  373

Query  366  H-HPHLGRDIDGLRWRW---FEHLGVPLPEVEIRCDPTLAENTLSVQVYQERVLEVVLPP  421
            +  ++L+R I+G+R R+    +++G+ LP  ++     +  + +   VY+   +   +  
Sbjct  374  QGTAELDRLIQGIRQRRNTLVHNFGLTLPSFDMEFADHFEPDEFRFCVYEVPFIRATFTN  433

Query  422  DSLLLT-RPCSSLVTNNQVLGAKMGSFDWLDAKQAMQARTLGIPYVEGHQRIITCLTRVF  480
              L +  R       +   +        W+D  +++  +    + V + + I+  ++R F
Sbjct  434  ARLAVDHREIDEDAGEPGRVERDETRWVWVDIDDPL-LKEEEHAGVSSLELILERMSRAF  492

Query  481  ERYTAEFIGVQETRYLMDAMEGRYGELVKELQRQIPVGKVAEILQRLVEENISIRDLRTI  540
            +   ++FIG+QE++ ++  +E+   EL +ELQR +P+++ A +LQRL  E +S+R +R I
Sbjct  493  QATGPQFIGLQESKAILSWLESEQPELAQELQRTLPLARFAAVLQRLSAELVSLRSVRPI  552

Query  541  FGALVVWAPKEKDIVMLTEYVRIALRRHLCRRFSHNK---TWISVLRLGDGVEHLIRDSI  597
              +L+  +  E+D+  LT+ VRIAL+ ++C++  +++   TW+    +    E L+RDS+
Sbjct  553  AETLIEQGQHERDLNALTDHVRIALKAQICHQHCEENTLHTWL----VTPETEVLLRDSL  608

Query  598  RQTSSGTYSALEERQSLLILNKIKNAFA--ENQDAVLLTTLDVRRFVRKIIERDLFVLPV  655
            RQT + +Y ALE   +  +++++++AF+   +  +VLL + D+R  +R ++  ++  +PV
Sbjct  609  RQTQNESYFALEPELGNALVEQLREAFPLQASPRPVLLVAQDLRSPLRSLLTDQFHHVPV  668

Query  656  LSWQELGDEMNLKVAGTIEL  675
            LS  EL   ++++V G I+L
Sbjct  669  LSFAELIPTVQVQVLGRIDL  688

70) YPDSF_3705 in NC_009381


> AY597281|10|G10|51103113|AAT96256.1|Pseudomonas_viridiflava_ME3.1b|+|9189..11279|hrcV|-|HrcV
Length=696

 Score =  320 bits (1199),  Expect = 2e-88, Method: Compositional matrix adjust.
 Identities = 275/680 (41%), Positives = 468/680 (69%), Gaps = 25/680 (3%)

Query  2    ITARQDIFLAVMLLVAVFMMILPLPTTMVDLLIAINLAFSVILLMISIYLRDPLEFSVFP  61
            + +R +I  AVM++  VFMMILPLPT +VD+LIA+N+ +S +L+++++YL  PL FS FP
Sbjct  15   VMGRTEIVGAVMVMAIVFMMILPLPTWLVDVLIALNICISSLLIVLAMYLPRPLAFSTFP  74

Query  62   SlllittlyrlaltISTTRLVLLQHDAGEIVEAFGQFVVGGNLAVGMiiftiitvvqfiv  121
            ++LL+TT++RL+L+I+TTRL+LLQ+DAG+IVEAFG FVVGGNLAVG++IF I+T+V+F+V
Sbjct  75   AVLLLTTMFRLSLSIATTRLILLQQDAGHIVEAFGSFVVGGNLAVGLVIFLILTIVNFLV  134

Query  122  itKGSERVAEVSARFSLDGMPGKQMSIDGDMRAGAIDSVEAKRLRERVQKESRLFGAMDG  181
            ITKGSERVAEV+ARF+LD+MPGKQMSID+D+RA  I+  EA++ RE++ KES+LFGAMDG
Sbjct  135  ITKGSERVAEVAARFTLDAMPGKQMSIDSDLRANLINVREARHRREQLSKESQLFGAMDG  194

Query  182  AMKFVKGDAiagiiviliniiggitigVMQHKMSAEEAMNTYAVLSIGDGLCAQIPSLLI  241
            AMKFVKGDAIAG+++++IN+IGG++IGV+Q+ M A +AM+ Y+VL+IGDGL AQIP+LLI
Sbjct  195  AMKFVKGDAIAGLVIVFINLIGGFSIGVLQNGMEAGDAMHLYSVLTIGDGLIAQIPALLI  254

Query  242  SITAGIIVTRVPG---SNKQSLANELAVQVGRQPDALWLAAAI-LTVFALLPGFPFLIFI  297
            S+TAG+I+TRV+    +   ++++E+A Q+  QP A W+ ++I +  F+L+PG P L+F 
Sbjct  255  SLTAGMIITRVAPDSQTADANIGHEIAEQLTSQPKA-WVFSSIGMMGFGLIPGMPTLVFA  313

Query  298  TLaaavaapaFL-LYR-KNRRISQD---GRANGGSEEGGATGQRMTPGAVPLMLHCASNL  352
             +A     ++++ L R +++ + QD   + ++G++E  G  + R    + + +L+C S+ 
Sbjct  314  CIALLCLFSGLIQLWRIRQKELHQDSIGAASKGAPELNGREDIRRFNPSRAYLLQCHSSH  373

Query  353  H-HPHLGRDIDGLRWRW---FEHLGVPLPEVEIRCDPTLAENTLSVQVYQERVLEVVLPP  408
            +  ++L+R I+G+R R+    +++G+ LP  ++     +  + +   VY+   +   +  
Sbjct  374  QGTAELDRLIQGIRQRRNTLVHNFGLTLPSFDMEFADHFEPDEFRFCVYEVPFIRATFTN  433

Query  409  DSLLLT-RPCSSLVTNNQVLGAKMGSFDWLDAKQAMQARTLGIPYVEGHQRIITCLTRVF  467
              L +  R       +   +        W+D  +++  +    + V + + I+  ++R F
Sbjct  434  ARLAVDHREIDEDAGEPGRVERDETRWVWVDIDDPL-LKEEEHAGVSSLELILERMSRAF  492

Query  468  ERYTAEFIGVQETRYLMDAMEGRYGELVKELQRQIPVGKVAEILQRLVEENISIRDLRTI  527
            +   ++FIG+QE++ ++  +E+   EL +ELQR +P+++ A +LQRL  E +S+R +R I
Sbjct  493  QATGPQFIGLQESKAILSWLESEQPELAQELQRTLPLARFAAVLQRLSAELVSLRSVRPI  552

Query  528  FGALVVWAPKEKDIVMLTEYVRIALRRHLCRRFSHNK---TWISVLRLGDGVEHLIRDSI  584
              +L+  +  E+D+  LT+ VRIAL+ ++C++  +++   TW+    +    E L+RDS+
Sbjct  553  AETLIEQGQHERDLNALTDHVRIALKAQICHQHCEENTLHTWL----VTPETEVLLRDSL  608

Query  585  RQTSSGTYSALEERQSLLILNKIKNAFA--ENQDAVLLTTLDVRRFVRKIIERDLFVLPV  642
            RQT + +Y ALE   +  +++++++AF+   +  +VLL + D+R  +R ++  ++  +PV
Sbjct  609  RQTQNESYFALEPELGNALVEQLREAFPLQASPRPVLLVAQDLRSPLRSLLTDQFHHVPV  668

Query  643  LSWQELGDEMNLKVAGTIEL  662
            LS  EL   ++++V G I+L
Sbjct  669  LSFAELIPTVQVQVLGRIDL  688