Homolog Viewer

PAthogenisity Island DataBase (PAI DB)

Home PAIs REIs Genomes Search Links

Homologs of cdu2 gene of X92982

protein-level

Hit (GenBank Accn)

Product

Source Genome

Eval.

Ident.(%)

1) cdu2
( YP_001087132.1 )

Na(+)/H(+) antiporter

NC_009089
(Clostridium difficile 630)

8e-111

2) cdu2
( YP_003213636.1 )

Na(+)/H(+) antiporter

NC_013315
(Clostridium difficile CD196)

3e-109

3) u2
( YP_003217083.1 )

Na(+)/H(+) antiporter

NC_013316
(Clostridium difficile R20291)

3e-109

4) Clos_1148
( YP_001512690.1 )

sodium/hydrogen exchanger

NC_009922
(Alkaliphilus oremlandii OhILAs)

5e-81

5) RTO_29590
( YP_007787882.1 )

sodium/proton antiporter, CPA1 family (TC 2.A.36)

NC_021015
([Ruminococcus] torques L2-14)

4e-80

6) Closa_2949
( YP_003823108.1 )

sodium/hydrogen exchanger

NC_014376
(Clostridium saccharolyticum WM1)

4e-78

7) Clole_1999
( YP_004308912.1 )

sodium/hydrogen exchanger

NC_015275
(Clostridium lentocellum DSM 5427)

6e-77

8) CK5_02810
( YP_007803886.1 )

sodium/proton antiporter, CPA1 family (TC 2.A.36)

NC_021022
([Ruminococcus] obeum A2-162)

1e-73

9) EC1_18690
( YP_007798719.1 )

sodium/proton antiporter, CPA1 family (TC 2.A.36)

NC_021019
(Eubacterium cylindroides T2-87)

3e-70

10) HMPREF0868_1067
( YP_003475360.1 )

transporter, CPA2 family

NC_013895
(Clostridiales genomosp. UPII9-5)

3e-70

11) EUBELI_01891
( YP_002931327.1 )

hypothetical protein

NC_012778
(Eubacterium eligens ATCC 27750)

1e-69

12) cdu
( YP_003935141.1 )

putative Na(+)/H(+) antiporter

NC_014614
(Clostridium sticklandii DSM 519)

4e-68

13) CCU_02390
( YP_007795477.1 )

sodium/proton antiporter, CPA1 family (TC 2.A.36)

NC_021018
(Coprococcus sp. ART55/1)

4e-67

14) ACL_0911
( YP_001620900.1 )

sodium/hydrogen exchanger

NC_010163
(Acholeplasma laidlawii PG-8A)

2e-63

15) FMG_1492
( YP_001692800.1 )

putative Na+/H+ antiporter

NC_010376
(Finegoldia magna ATCC 29328)

1e-62

16) Bmur_2077
( YP_003634351.1 )

sodium/hydrogen exchanger

NC_014150
(Brachyspira murdochii DSM 12563)

9e-62

17) cdu2
( YP_002721613.1 )

Na(+)/H(+) antiporter

NC_012225
(Brachyspira hyodysenteriae WA1)

2e-60

18) cdu2
( YP_005593627.1 )

Na(+)/H(+) antiporter

NC_017243
(Brachyspira intermedia PWS/A)

7e-58

19) BP951000_0101
( YP_003784611.1 )

putative Na(+)/H(+) antiporter

NC_014330
(Brachyspira pilosicoli 95/1000)

2e-57

20) cdu1
( YP_006707478.1 )

Na(+)/H(+) antiporter

NC_018607
(Brachyspira pilosicoli B2904)

2e-57

21) BPP43_02595
( YP_007234090.1 )

Na(+)/H(+) antiporter

NC_019908
(Brachyspira pilosicoli P43/6/78)

2e-57

22) HMPREF9243_0706
( YP_004321022.1 )

transporter, CPA2 family

NC_015278
(Aerococcus urinae ACS-120-V-Col10a)

2e-56

23) Apre_1535
( YP_003153277.1 )

sodium/hydrogen exchanger

NC_013171
(Anaerococcus prevotii DSM 20548)

4e-54

24) Hprae_1491
( YP_005836778.1 )

sodium/proton antiporter

NC_017455
(Halanaerobium praevalens DSM 2228)

2e-51

25) Rumal_1338
( YP_004104487.1 )

sodium/hydrogen exchanger

NC_014833
(Ruminococcus albus 7)

1e-50

26) MTBMA_c11540
( YP_003850060.1 )

Na+/H+ antiporter

NC_014408
(Methanothermobacter marburgensis Marburg)

3e-35

27) Amet_4404
( YP_001322136.1 )

sodium/hydrogen exchanger

NC_009633
(Alkaliphilus metalliredigens QYMF)

2e-33

28) CTC02161
( NP_782716.1 )

Na(+)/H(+) antiporter

NC_004557
(Clostridium tetani E88)

3e-33

29) Sterm_3197
( YP_003309969.1 )

sodium/hydrogen exchanger

NC_013517
(Sebaldella termitidis ATCC 33386)

9e-32

30) Clocl_2942
( YP_005047412.1 )

NhaP-type Na+(K+)/H+ antiporter

NC_016627
(Clostridium clariflavum DSM 19732)

1e-27

31) MTH760
( NP_275902.1 )

Na+/H+-exchanging protein:Na+/H+ antiporter

NC_000916
(Methanothermobacter thermautotrophicus Delta H)

3e-24

• Sequence Alignments

1) cdu2 in NC_009089


> X92982|1|G1|1770129|CAA63558.1|Clostridium_difficile_VPI10463|+|304..1245|cdu2|-|-
Length=313

 Score =  393 bits (1478),  Expect = 8e-111, Method: Compositional matrix adjust.
 Identities = 312/313 (99%), Positives = 312/313 (99%), Gaps = 0/313 (0%)

Query  1    MLTSLALIFLLGMASGGIFKRIKLPNllgmlltgiilgPYVLNLIDNSILDISSDLRKIA  60
            MLTSLALIFLLGMASGGIFKRIKLPNLLGMLLTGIILGPYVLNLIDNSILDISSDLRKIA
Sbjct  1    MLTSLALIFLLGMASGGIFKRIKLPNLLGMLLTGIILGPYVLNLIDNSILDISSDLRKIA  60

Query  61   LIIILTRAGLSLDINDLKKVGRPAVLMCFIPATFEIIGMIVLAPKLLGVSILEaavmgav  120
            LIIILTRAGLSLDINDLKKVGRPAVLMCFIPATFEIIGMIVLAPKLLGVSILEAAVMGAV
Sbjct  61   LIIILTRAGLSLDINDLKKVGRPAVLMCFIPATFEIIGMIVLAPKLLGVSILEAAVMGAV  120

Query  121  vgavSPAIIVPKMLKLMEEGYGTEKSIPQMLLAGTSIDDIFVIVMFTVFTGLAQGNSISA  180
            VGAVSPAIIVPKMLKLMEEGYGTEKSIPQMLLAGTSIDDIFVIVMFTVFTGLAQGNSISA
Sbjct  121  VGAVSPAIIVPKMLKLMEEGYGTEKSIPQMLLAGTSIDDIFVIVMFTVFTGLAQGNSISA  180

Query  181  ISFLQIPvsiilgvivgavigiclavFFKKVHMRDSAKGVlllsisflmislETALEGIV  240
            ISFLQIPVSIILGVI GAVIGICLAVFFKKVHMRDSAKGVLLLSISFLMISLETALEGIV
Sbjct  181  ISFLQIPVSIILGVIAGAVIGICLAVFFKKVHMRDSAKGVLLLSISFLMISLETALEGIV  240

Query  241  PFSGLLAVMSIGIFLQIKYRVVARRLSIKYSKLWVGAEILLFVLVGATVDISYAFKAGIG  300
            PFSGLLAVMSIGIFLQIKYRVVARRLSIKYSKLWVGAEILLFVLVGATVDISYAFKAGIG
Sbjct  241  PFSGLLAVMSIGIFLQIKYRVVARRLSIKYSKLWVGAEILLFVLVGATVDISYAFKAGIG  300

Query  301  AVILIFGVLLFRM  313
            AVILIFGVLLFRM
Sbjct  301  AVILIFGVLLFRM  313

2) CDBI1_03090 in NC_017179


> X92982|1|G1|1770129|CAA63558.1|Clostridium_difficile_VPI10463|+|304..1245|cdu2|-|-
Length=313

 Score =  388 bits (1459),  Expect = 3e-109, Method: Compositional matrix adjust.
 Identities = 306/313 (98%), Positives = 311/313 (99%), Gaps = 0/313 (0%)

Query  1    MLTSLALIFLLGMASGGIFEKIKLPSllgmlltgiilgSYVLNLIDNSILDISSDLRKIA  60
            MLTSLALIFLLGMASGGIF +IKLP+LLGMLLTGIILG+YVLNLIDNSILDISSDLRKIA
Sbjct  1    MLTSLALIFLLGMASGGIFKRIKLPNLLGMLLTGIILGPYVLNLIDNSILDISSDLRKIA  60

Query  61   LIIILTRAGLSLDINDLKKVGRPAVLMCFIPATFEIIGMIVLAPKLLGVSILEaavmgav  120
            LIIILTRAGLSLDINDLKKVGRPAVLMCFIPATFEIIGMIVLAPKLLGVSILEAAVMGAV
Sbjct  61   LIIILTRAGLSLDINDLKKVGRPAVLMCFIPATFEIIGMIVLAPKLLGVSILEAAVMGAV  120

Query  121  vgavSPAIIVPKMLKLMEEGYGTEKSIPQMLLAGTSIDDIFVIVMFTVFTGLAQGNSISA  180
            VGAVSPAIIVPKMLKLMEEGYGTEKSIPQMLLAGTSIDDIFVIVMFTVFTGLAQGNSISA
Sbjct  121  VGAVSPAIIVPKMLKLMEEGYGTEKSIPQMLLAGTSIDDIFVIVMFTVFTGLAQGNSISA  180

Query  181  ISFLQIPvsiilgvivgavigiclavFFKKVHMRDSAKGVlllsisflmislETALEGIV  240
            ISFLQIPVSIILGVI GAVIGICLAVFFKKVHMRDSAKGVLLLSISFLMISLETALEGIV
Sbjct  181  ISFLQIPVSIILGVIAGAVIGICLAVFFKKVHMRDSAKGVLLLSISFLMISLETALEGIV  240

Query  241  PFSGLLAVMNIGIFLQIKYRVVARRLSVKYSKLWVGAEILLFVLVGATVDISYAFKAGIG  300
            PFSGLLAVM+IGIFLQIKYRVVARRLS+KYSKLWVGAEILLFVLVGATVDISYAFKAGIG
Sbjct  241  PFSGLLAVMSIGIFLQIKYRVVARRLSIKYSKLWVGAEILLFVLVGATVDISYAFKAGIG  300

Query  301  AVILIFGVLLFRM  313
            AVILIFGVLLFRM
Sbjct  301  AVILIFGVLLFRM  313

3) cdu2 in NC_013315


> X92982|1|G1|1770129|CAA63558.1|Clostridium_difficile_VPI10463|+|304..1245|cdu2|-|-
Length=313

 Score =  388 bits (1459),  Expect = 3e-109, Method: Compositional matrix adjust.
 Identities = 306/313 (98%), Positives = 311/313 (99%), Gaps = 0/313 (0%)

Query  1    MLTSLALIFLLGMASGGIFEKIKLPSllgmlltgiilgSYVLNLIDNSILDISSDLRKIA  60
            MLTSLALIFLLGMASGGIF +IKLP+LLGMLLTGIILG+YVLNLIDNSILDISSDLRKIA
Sbjct  1    MLTSLALIFLLGMASGGIFKRIKLPNLLGMLLTGIILGPYVLNLIDNSILDISSDLRKIA  60

Query  61   LIIILTRAGLSLDINDLKKVGRPAVLMCFIPATFEIIGMIVLAPKLLGVSILEaavmgav  120
            LIIILTRAGLSLDINDLKKVGRPAVLMCFIPATFEIIGMIVLAPKLLGVSILEAAVMGAV
Sbjct  61   LIIILTRAGLSLDINDLKKVGRPAVLMCFIPATFEIIGMIVLAPKLLGVSILEAAVMGAV  120

Query  121  vgavSPAIIVPKMLKLMEEGYGTEKSIPQMLLAGTSIDDIFVIVMFTVFTGLAQGNSISA  180
            VGAVSPAIIVPKMLKLMEEGYGTEKSIPQMLLAGTSIDDIFVIVMFTVFTGLAQGNSISA
Sbjct  121  VGAVSPAIIVPKMLKLMEEGYGTEKSIPQMLLAGTSIDDIFVIVMFTVFTGLAQGNSISA  180

Query  181  ISFLQIPvsiilgvivgavigiclavFFKKVHMRDSAKGVlllsisflmislETALEGIV  240
            ISFLQIPVSIILGVI GAVIGICLAVFFKKVHMRDSAKGVLLLSISFLMISLETALEGIV
Sbjct  181  ISFLQIPVSIILGVIAGAVIGICLAVFFKKVHMRDSAKGVLLLSISFLMISLETALEGIV  240

Query  241  PFSGLLAVMNIGIFLQIKYRVVARRLSVKYSKLWVGAEILLFVLVGATVDISYAFKAGIG  300
            PFSGLLAVM+IGIFLQIKYRVVARRLS+KYSKLWVGAEILLFVLVGATVDISYAFKAGIG
Sbjct  241  PFSGLLAVMSIGIFLQIKYRVVARRLSIKYSKLWVGAEILLFVLVGATVDISYAFKAGIG  300

Query  301  AVILIFGVLLFRM  313
            AVILIFGVLLFRM
Sbjct  301  AVILIFGVLLFRM  313

4) u2 in NC_013316


> X92982|1|G1|1770129|CAA63558.1|Clostridium_difficile_VPI10463|+|304..1245|cdu2|-|-
Length=313

 Score =  388 bits (1459),  Expect = 3e-109, Method: Compositional matrix adjust.
 Identities = 306/313 (98%), Positives = 311/313 (99%), Gaps = 0/313 (0%)

Query  1    MLTSLALIFLLGMASGGIFEKIKLPSllgmlltgiilgSYVLNLIDNSILDISSDLRKIA  60
            MLTSLALIFLLGMASGGIF +IKLP+LLGMLLTGIILG+YVLNLIDNSILDISSDLRKIA
Sbjct  1    MLTSLALIFLLGMASGGIFKRIKLPNLLGMLLTGIILGPYVLNLIDNSILDISSDLRKIA  60

Query  61   LIIILTRAGLSLDINDLKKVGRPAVLMCFIPATFEIIGMIVLAPKLLGVSILEaavmgav  120
            LIIILTRAGLSLDINDLKKVGRPAVLMCFIPATFEIIGMIVLAPKLLGVSILEAAVMGAV
Sbjct  61   LIIILTRAGLSLDINDLKKVGRPAVLMCFIPATFEIIGMIVLAPKLLGVSILEAAVMGAV  120

Query  121  vgavSPAIIVPKMLKLMEEGYGTEKSIPQMLLAGTSIDDIFVIVMFTVFTGLAQGNSISA  180
            VGAVSPAIIVPKMLKLMEEGYGTEKSIPQMLLAGTSIDDIFVIVMFTVFTGLAQGNSISA
Sbjct  121  VGAVSPAIIVPKMLKLMEEGYGTEKSIPQMLLAGTSIDDIFVIVMFTVFTGLAQGNSISA  180

Query  181  ISFLQIPvsiilgvivgavigiclavFFKKVHMRDSAKGVlllsisflmislETALEGIV  240
            ISFLQIPVSIILGVI GAVIGICLAVFFKKVHMRDSAKGVLLLSISFLMISLETALEGIV
Sbjct  181  ISFLQIPVSIILGVIAGAVIGICLAVFFKKVHMRDSAKGVLLLSISFLMISLETALEGIV  240

Query  241  PFSGLLAVMNIGIFLQIKYRVVARRLSVKYSKLWVGAEILLFVLVGATVDISYAFKAGIG  300
            PFSGLLAVM+IGIFLQIKYRVVARRLS+KYSKLWVGAEILLFVLVGATVDISYAFKAGIG
Sbjct  241  PFSGLLAVMSIGIFLQIKYRVVARRLSIKYSKLWVGAEILLFVLVGATVDISYAFKAGIG  300

Query  301  AVILIFGVLLFRM  313
            AVILIFGVLLFRM
Sbjct  301  AVILIFGVLLFRM  313

5) Clos_1148 in NC_009922


> X92982|1|G1|1770129|CAA63558.1|Clostridium_difficile_VPI10463|+|304..1245|cdu2|-|-
Length=313

 Score =  294 bits (1101),  Expect = 5e-81, Method: Compositional matrix adjust.
 Identities = 178/294 (61%), Positives = 262/294 (90%), Gaps = 0/294 (0%)

Query  20   NKLKLPSLLGMMIAGMILSPYGLNLLHPSILEISSDLRQLALIIILTRAGLSFNIGDLKK  79
            +++KLP+LLGM+++G+IL+PY LNL++ SIL+ISSDLR++ALIIILTRAGLS++I DLKK
Sbjct  20   KRIKLPNLLGMLLTGIILGPYVLNLIDNSILDISSDLRKIALIIILTRAGLSLDINDLKK  79

Query  80   VGRPALLMCFVPACFEIIGVTVIATRVMAVSFLDAAIMGsvlaavspavvvpRMIKIIEE  139
            VGRPA+LMCF+PA FEIIG+ V+A ++++VS+L+AA+MG+V++AVSPA++VP+M+K++EE
Sbjct  80   VGRPAVLMCFIPATFEIIGMIVLAPKLLGVSILEAAVMGAVVGAVSPAIIVPKMLKLMEE  139

Query  140  GYGKERSIPQLILAGASVDDVFVIVLFTAFTSLASGGKVSIFNFLQIPVSIILGIMLGAL  199
            GYG E+SIPQ++LAG+S+DD+FVIV+FT FT+LA G  +S ++FLQIPVSIILG++ GA+
Sbjct  140  GYGTEKSIPQMLLAGTSIDDIFVIVMFTVFTGLAQGNSISAISFLQIPVSIILGVIAGAV  199

Query  200  FGLILVLFLKKISVRDSVRILIVLSVSFLLMEIERQLNGILPVSGLLAILSMGIMIYRKD  259
            +G+ L +F+KK+ +RDS + +++LS+SFL++ +E  L+GI+P SGLLA++S+GI +  K 
Sbjct  200  IGICLAVFFKKVHMRDSAKGVLLLSISFLMISLETALEGIVPFSGLLAVMSIGIFLQIKY  259

Query  260  GLSAKQLSMQYNKLWVAAEILLFVLVGAAVDLSYATKAGTSAVIIVLCALIFRM  313
             + A++LS++Y+KLWV+AEILLFVLVGA+VD+SYA KAG +AVI+++  L+FRM
Sbjct  260  RVVARRLSIKYSKLWVGAEILLFVLVGATVDISYAFKAGIGAVILIFGVLLFRM  313

6) RTO_29590 in NC_021015


> X92982|1|G1|1770129|CAA63558.1|Clostridium_difficile_VPI10463|+|304..1245|cdu2|-|-
Length=313

 Score =  291 bits (1089),  Expect = 4e-80, Method: Compositional matrix adjust.
 Identities = 186/294 (64%), Positives = 266/294 (91%), Gaps = 0/294 (0%)

Query  6    KKIKLPSLLGMMITGMILGPYVLNLLDDSILGISAELRKIALIIILTRAGLGLDLSGLKK  65
            K+IKLP+LLGM++TG+ILGPYVLNL+D+SIL+IS++LRKIALIIILTRAGL+LD+++LKK
Sbjct  20   KRIKLPNLLGMLLTGIILGPYVLNLIDNSILDISSDLRKIALIIILTRAGLSLDINDLKK  79

Query  66   IGRPAVMMCFVPATFEIVGIVLLAPKLMGLSILEAAIMGavlaavspavvvpRMVKLMEE  125
            +GRPAV+MCF+PATFEI+G+++LAPKL+G+SILEAA+MGAV++AVSPA++VP+M+KLMEE
Sbjct  80   VGRPAVLMCFIPATFEIIGMIVLAPKLLGVSILEAAVMGAVVGAVSPAIIVPKMLKLMEE  139

Query  126  GYGVKQGIPQLILAGASVDDVYVIVLFSTFTGMMQGQSTSILSFINIPVSIFlgigigll  185
            GYG  ++IPQ++LAG+S+DD++VIV+F+ FTG+ QG+S S +SF++IPVSI+LG+  G +
Sbjct  140  GYGTEKSIPQMLLAGTSIDDIFVIVMFTVFTGLAQGNSISAISFLQIPVSIILGVIAGAV  199

Query  186  igTCLAYYFKKVHIRDTskvliilsislllvvMEDSLNTAITFSALIAIMFIGIGLQKKR  245
            IG CLA +FKKVH+RD++K +++LSIS+L++ +E +L+  + FS+L+A+M IGI LQ K 
Sbjct  200  IGICLAVFFKKVHMRDSAKGVLLLSISFLMISLETALEGIVPFSGLLAVMSIGIFLQIKY  259

Query  246  EVVAKRISVKYGKLWVAAEVFLFVLVGATVNVGYLGKIGVKALVVIVGALVFRM  299
             VVA+R+S+KY+KLWV+AE++LFVLVGATV+++Y  K G+ A+++I G L+FRM
Sbjct  260  RVVARRLSIKYSKLWVGAEILLFVLVGATVDISYAFKAGIGAVILIFGVLLFRM  313

7) Closa_2949 in NC_014376


> X92982|1|G1|1770129|CAA63558.1|Clostridium_difficile_VPI10463|+|304..1245|cdu2|-|-
Length=313

 Score =  284 bits (1064),  Expect = 4e-78, Method: Compositional matrix adjust.
 Identities = 191/313 (62%), Positives = 265/313 (85%), Gaps = 0/313 (0%)

Query  1    MLYSLAIMVLCGMILSGTMQKLKLPGLVGMLLTGIVLGPNALNLIAPELLNVSADLRQIA  60
            ML SLA++ L GM  +G  +++KLP L+GMLLTGI+LGP  LNLI   +L++S+DLR+IA
Sbjct  1    MLTSLALIFLLGMASGGIFKRIKLPNLLGMLLTGIILGPYVLNLIDNSILDISSDLRKIA  60

Query  61   LIVILTRAGLALDIKDLKRVGRPAILMCfipatfeitattifapMFFPVSHLEAAIMGTV  120
            LI+ILTRAGL+LDI+DLK+VGRPA+LMCFIPATFEI +  ++AP ++ VS LEAA+MG+V
Sbjct  61   LIIILTRAGLSLDINDLKKVGRPAVLMCFIPATFEIIGMIVLAPKLLGVSILEAAVMGAV  120

Query  121  LGAVSPAVIVPKMLKLMEHGYGREKSIPQLIMAGASVDDIYVIVLFTSFMGMYQGSSFDA  180
            +GAVSPA+IVPKMLKLME+GYG EKSIPQ+++AG+S+DDI+VIV+FT F G+ QG+S+ A
Sbjct  121  VGAVSPAIIVPKMLKLMEEGYGTEKSIPQMLLAGTSIDDIFVIVMFTVFTGLAQGNSISA  180

Query  181  VSLFKIPAAIVTGLMAGILLGLVLVMLFQRIHMRDTAKILILLSTAFLLISLETAIKKYV  240
            +S+++IP +I+ G++AG ++G+ L ++F+++HMRD+AK ++LLS +FL+ISLETA+   V
Sbjct  181  ISFLQIPVSIILGVIAGAVIGICLAVFFKKVHMRDSAKGVLLLSISFLMISLETALEGIV  240

Query  241  PMSGLLAVMSLGGTILKKNDILAKRLSGKFSKIWVAAELMLFILVGATVDISYAAKAGFM  300
            P SGLLAVMS+G  +  K  ++A+RLS K+SK+WV+AE++LF+LVGATVDISYA KAG+ 
Sbjct  241  PFSGLLAVMSIGIFLQIKYRVVARRLSIKYSKLWVGAEILLFVLVGATVDISYAFKAGIG  300

Query  301  AVALIFLALAIRI  313
            AV LIF  L +R+
Sbjct  301  AVILIFGVLLFRM  313

8) Clole_1999 in NC_015275


> X92982|1|G1|1770129|CAA63558.1|Clostridium_difficile_VPI10463|+|304..1245|cdu2|-|-
Length=313

 Score =  281 bits (1050),  Expect = 6e-77, Method: Compositional matrix adjust.
 Identities = 188/294 (64%), Positives = 260/294 (89%), Gaps = 0/294 (0%)

Query  20   NKLKLPNLLGMIITGMILGPYAIGALDASILRISPDLRQLALVIILTRAGLSLELEDLKK  79
            +++KLPNLLGM++TG+ILGPY +  +D SIL IS+DLR++AL+IILTRAGLSL+++DLKK
Sbjct  20   KRIKLPNLLGMLLTGIILGPYVLNLIDNSILDISSDLRKIALIIILTRAGLSLDINDLKK  79

Query  80   VGRPAVLMCFIPACFEIMGVILLAPQLLGISILEAAIMGTviaavspavivpRMLHLMEE  139
            VGRPAVLMCFIPA FEI+G+I+LAP+LLG+SILEAA+MG+V++AVSPA+IVP+ML LMEE
Sbjct  80   VGRPAVLMCFIPATFEIIGMIVLAPKLLGVSILEAAVMGAVVGAVSPAIIVPKMLKLMEE  139

Query  140  GYGVKKSVPQLILAGASVDDVFVIVLFTAFTALASGGEVSIGSFVQIPiaivvgiaigig  199
            GYG  KS+PQ++LAG+S+DD+FVIV+FT FT+LA G  +S  SF+QIP++I++G+  G  
Sbjct  140  GYGTEKSIPQMLLAGTSIDDIFVIVMFTVFTGLAQGNSISAISFLQIPVSIILGVIAGAV  199

Query  200  vgillviFFKKWHLRDSMKiliilsisflliEMEHRLVDIVPMSGLLAIMTLGIILNRQY  259
            +GI L +FFKK H+RDS K +++LSISFL+I +E  L +IVP SGLLA+M++GI+L+ +Y
Sbjct  200  IGICLAVFFKKVHMRDSAKGVLLLSISFLMISLETALEGIVPFSGLLAVMSIGIFLQIKY  259

Query  260  GALAKRLAIKYNKLWVAAEVILFVLVGATVDLNYAIKAGIVAVMVVLGALIIRM  313
              +A+RL+IKY+KLWV+AE++LFVLVGATVD++YA+KAGI AV++++G L++RM
Sbjct  260  RVVARRLSIKYSKLWVGAEILLFVLVGATVDISYAFKAGIGAVILIFGVLLFRM  313

9) CK5_02810 in NC_021022


> X92982|1|G1|1770129|CAA63558.1|Clostridium_difficile_VPI10463|+|304..1245|cdu2|-|-
Length=313

 Score =  270 bits (1008),  Expect = 1e-73, Method: Compositional matrix adjust.
 Identities = 181/294 (62%), Positives = 253/294 (87%), Gaps = 0/294 (0%)

Query  20   QKIKLPALLGMLITGVILGPYGLNLLDGSILGISAELRKIALIIILTRAGLGLDLSGLKK  79
            ++IKLP LLGML+TG+ILGPY LNL+D SIL+IS++LRKIALIIILTRAGL+LD+++LKK
Sbjct  20   KRIKLPNLLGMLLTGIILGPYVLNLIDNSILDISSDLRKIALIIILTRAGLSLDINDLKK  79

Query  80   IGRPAVLMCFVPASFELLGMILLAPKLMGLSVLESAVMGavlaavspavvvpRMVKLMDE  139
            +GRPAVLMCF+PA+FE++GMI+LAPKL+G+S+LE+AVMGAV++AVSPA++VP+M+KLM+E
Sbjct  80   VGRPAVLMCFIPATFEIIGMIVLAPKLLGVSILEAAVMGAVVGAVSPAIIVPKMLKLMEE  139

Query  140  GYGVKEGIPQLILAGASVDDVYVIVLFSTFVGMMQGEGASILKFVNVPVSIFggiaigll  199
            GYG   +IPQ++LAG+S+DD++VIV+F+ F G+ QG++ S + F+++PVSI+ G+  G +
Sbjct  140  GYGTEKSIPQMLLAGTSIDDIFVIVMFTVFTGLAQGNSISAISFLQIPVSIILGVIAGAV  199

Query  200  lgvllaYFFKKVHIRDTskvliilsisfllvviEDKLTTAITFSSLIAVMFIGIGLQKKR  259
            +G+ LA FFKKVH+RD++K +++LSISFL++ +E  L   + FS+L+AVM IGI LQ K 
Sbjct  200  IGICLAVFFKKVHMRDSAKGVLLLSISFLMISLETALEGIVPFSGLLAVMSIGIFLQIKY  259

Query  260  EAVAERLSVKYGKLWVAAEVFLFVLVGATVNIEYLGKVGSKAFVVIIGALIFRM  313
              VA RLS+KY+KLWV+AE++LFVLVGATV+I Y  K G  A ++I+G L+FRM
Sbjct  260  RVVARRLSIKYSKLWVGAEILLFVLVGATVDISYAFKAGIGAVILIFGVLLFRM  313

10) EC1_18690 in NC_021019


> X92982|1|G1|1770129|CAA63558.1|Clostridium_difficile_VPI10463|+|304..1245|cdu2|-|-
Length=313

 Score =  259 bits (966),  Expect = 3e-70, Method: Compositional matrix adjust.
 Identities = 187/318 (59%), Positives = 268/318 (85%), Gaps = 6/318 (1%)

Query  1    MLTSLAFIFLVGLSMAAICQRIKLPRIIGMLITGIVLGPYVldlldpsilsisadlRQMA  60
            MLTSLA+IFL+G++ ++I +RIKLP ++GML+TGI+LGPYVL+L+D SIL IS+DLR++A
Sbjct  1    MLTSLALIFLLGMASGGIFKRIKLPNLLGMLLTGIILGPYVLNLIDNSILDISSDLRKIA  60

Query  61   LIIILLKAGLSLNLEDLKKVGRPAIMMSFVPASFEILAFFLFAPYILGIDRISAAVMGsv  120
            LIIIL +AGLSL+++DLKKVGRPA++M F+PA+FEI++ +++AP +LG+  + AAVMG+V
Sbjct  61   LIIILTRAGLSLDINDLKKVGRPAVLMCFIPATFEIIGMIVLAPKLLGVSILEAAVMGAV  120

Query  121  laavspavvvprmvsLMEEKYGTKKSIPQMIMAGASCDDIFVIVLFTTFTGMAQGGSANF  180
            ++AVSPA++VP+M+ LMEE YGT KSIPQM++AG+S DDIFVIV+FT FTG+AQG S + 
Sbjct  121  VGAVSPAIIVPKMLKLMEEGYGTEKSIPQMLLAGTSIDDIFVIVMFTVFTGLAQGNSISA  180

Query  181  IDFLNIPVSIVLGIILGAVTGYFLSWFFETTYALKNYVRNSMKVIIVLGVSFLLMAIETW  240
            I FL+IPVSI+LG+I GAV G  L+ FF      K  +R+S K +++L++SFL++++ET 
Sbjct  181  ISFLQIPVSIILGVIAGAVIGICLAVFFK-----KVHMRDSAKGVLLLSISFLMISLETA  235

Query  241  LEGIVSVSGLLAVVSMACVIKLKSTEFVSKRLSEKFGKLWLAAEVLLFVLVGAAVDIRYT  300
            LEGIV+ SGLLAV+S++  +++K    V++RLS K++KLW++AE+LLFVLVGA+VDI Y+
Sbjct  236  LEGIVPFSGLLAVMSIGIFLQIKYRV-VARRLSIKYSKLWVGAEILLFVLVGATVDISYA  294

Query  301  MDAGLAAVLMIFVALVFR  318
              AG++AV++IF  L+FR
Sbjct  295  FKAGIGAVILIFGVLLFR  312

11) HMPREF0868_1067 in NC_013895


> X92982|1|G1|1770129|CAA63558.1|Clostridium_difficile_VPI10463|+|304..1245|cdu2|-|-
Length=313

 Score =  259 bits (966),  Expect = 3e-70, Method: Compositional matrix adjust.
 Identities = 172/318 (55%), Positives = 257/318 (81%), Gaps = 6/318 (1%)

Query  36   MLTSLAFIFLIGLVLAAICRQIKLPRivgillsgillgPYVLNLLDPGILGVSAALRQMA  95
            MLTSLA+IFL+G+  ++I ++IKLP ++G+LL+GI+LGPYVLNL+D +IL++S+ LR++A
Sbjct  1    MLTSLALIFLLGMASGGIFKRIKLPNLLGMLLTGIILGPYVLNLIDNSILDISSDLRKIA  60

Query  96   LIIILLKAGLSLNPADLKKVGRPAVMMSFVPASCEILAFFLLAPTLLGINRTEALVMGAV  155
            LIIIL +AGLSL+  DLKKVGRPAV+M F+PA+ EI++ ++LAP LLG++  EA VMGAV
Sbjct  61   LIIILTRAGLSLDINDLKKVGRPAVLMCFIPATFEIIGMIVLAPKLLGVSILEAAVMGAV  120

Query  156  LGAVSPAVVVPHMIQLMDEKYGTDKSIPQLIMAGASCDDIFVIVLFSTFLGMAGGGKANL  215
            +GAVSPA++VP M++LM+E YGT+KSIPQ+++AG+S DDIFVIV+F+ F G+A G   + 
Sbjct  121  VGAVSPAIIVPKMLKLMEEGYGTEKSIPQMLLAGTSIDDIFVIVMFTVFTGLAQGNSISA  180

Query  216  ANLVNIPVSVILGILLGAVTGYILGKLFETAYEYKHCIRNSIKIIIILGTAFMLMAIEQW  275
             ++++IPVS+ILG++ GAV G  L+ +F      K  +R+S K +++L+ +F+++++E  
Sbjct  181  ISFLQIPVSIILGVIAGAVIGICLAVFFK-----KVHMRDSAKGVLLLSISFLMISLETA  235

Query  276  LKGVLPVSGLLAVVSMACVLKIKSCDCVSERLSEKFGKIWPAAELLLFALVGAAVDIRYT  335
            L G++P SGLLAV+S++  L+IK    V+ RLS K++K+W +AE+LLF LVGA+VDI Y+
Sbjct  236  LEGIVPFSGLLAVMSIGIFLQIK-YRVVARRLSIKYSKLWVGAEILLFVLVGATVDISYA  294

Query  336  LNAGIMAVLMIFIALIFR  353
            ++AGI AV++IF  L+FR
Sbjct  295  FKAGIGAVILIFGVLLFR  312

12) EUBELI_01891 in NC_012778


> X92982|1|G1|1770129|CAA63558.1|Clostridium_difficile_VPI10463|+|304..1245|cdu2|-|-
Length=313

 Score =  256 bits (958),  Expect = 1e-69, Method: Compositional matrix adjust.
 Identities = 179/318 (57%), Positives = 262/318 (83%), Gaps = 6/318 (1%)

Query  44   MLTSLSLIFLVGLVMGAICQKLKLPRIIGMLVTGIVLGPYVLDFLDPSILSISADLRKMA  103
            MLTSL+LIFL+G+  G+I +++KLP ++GML+TGI+LGPYVL+++D SIL IS+DLRK+A
Sbjct  1    MLTSLALIFLLGMASGGIFKRIKLPNLLGMLLTGIILGPYVLNLIDNSILDISSDLRKIA  60

Query  104  LIIILIKAGLSLDLKDLKKAGRSAILMSFVPASCEIIGYILLAPVILGINHAEATVMGav  163
            LIIIL +AGLSLD++DLKK GR+A+LM F+PA+ EIIG I+LAP +LG++  EA+VMGAV
Sbjct  61   LIIILTRAGLSLDINDLKKVGRPAVLMCFIPATFEIIGMIVLAPKLLGVSILEAAVMGAV  120

Query  164  laavspavvvpRMVMLIEKRYGTAKAIPQMILSGASCDDIFVIVLFTTFLNVAQGGKANV  223
            ++AVSPA++VP+M+ L+E  YGT K+IPQM+L+G+S DDIFVIV+FT F  +AQG   + 
Sbjct  121  VGAVSPAIIVPKMLKLMEEGYGTEKSIPQMLLAGTSIDDIFVIVMFTVFTGLAQGNSISA  180

Query  224  MDFVNIPVSiilgiilgivtglglylFFETSYARKHTVRNSMKVIIVLGFSFLLIAIEGW  283
            + F++IPVSIILG+I G V G+ L +FF     +K  +R+S K +++L++SFL+I++E  
Sbjct  181  ISFLQIPVSIILGVIAGAVIGICLAVFF-----KKVHMRDSAKGVLLLSISFLMISLETA  235

Query  284  LEGKVSVSGLLAVVAMACTLKFKCVPAVSARLSEKFGKLWLAAEVILFVLVGAAVDIRYT  343
            LEG V+ SGLLAV++++  L++K    V+ RLS K++KLW++AE++LFVLVGA+VDI Y+
Sbjct  236  LEGIVPFSGLLAVMSIGIFLQIKY-RVVARRLSIKYSKLWVGAEILLFVLVGATVDISYA  294

Query  344  LKAGLPALLMILAALVFR  361
            +KAG+ A+++I++ L+FR
Sbjct  295  FKAGIGAVILIFGVLLFR  312

13) cdu in NC_014614


> X92982|1|G1|1770129|CAA63558.1|Clostridium_difficile_VPI10463|+|304..1245|cdu2|-|-
Length=313

 Score =  251 bits (938),  Expect = 4e-68, Method: Compositional matrix adjust.
 Identities = 165/294 (57%), Positives = 242/294 (83%), Gaps = 0/294 (0%)

Query  20   NRLRLPgllgmiltgiilgPYALNLISPDILDISSDLREIALIIILTRAGLNIDIKDLKK  79
            +R++LP LLGM+LTGIILGPY LNLI   ILDISSDLR IALIIILTRAGL++DI+DLKK
Sbjct  20   KRIKLPNLLGMLLTGIILGPYVLNLIDNSILDISSDLRKIALIIILTRAGLSLDINDLKK  79

Query  80   VGRPAILMCFVPALFEITAVTLLAPIFFNISYIEAAIMGSVLAAVSPAVIVPRMIHLIDS  139
            VGRPA+LMCF+PA FEI ++ +LAP ++ +S +EAA+MG+V++AVSPA+IVP+M+ L++ 
Sbjct  80   VGRPAVLMCFIPATFEIIGMIVLAPKLLGVSILEAAVMGAVVGAVSPAIIVPKMLKLMEE  139

Query  140  GYGKDKSIPQLIMAGASVDDIFVIVLFASFMGMYSGEGFNPTSLLLVPVsiisgmglgii  199
            GYG +KSIPQ+++AG+S+DDIFVIV+F+ F G+  G+++++ S+L +PVSII G+  G +
Sbjct  140  GYGTEKSIPQMLLAGTSIDDIFVIVMFTVFTGLAQGNSISAISFLQIPVSIILGVIAGAV  199

Query  200  sgFIFVKVFKAIHVRDTVKVLIMLSIAFLFVSFEDFIKPYFPVSGLLAVMAFSATILSTY  259
             G+ +   FK +H+RD+ K +++LSI+FL +S+E  +    P SGLLAVM+++  +   Y
Sbjct  200  IGICLAVFFKKVHMRDSAKGVLLLSISFLMISLETALEGIVPFSGLLAVMSIGIFLQIKY  259

Query  260  EVLAKRITGKFSKIWVAAEVLLFVLVGAAVDISYLKGAGIASIVFILSALVFRI  313
             V+A+R++ K+SK+WV+AE+LLFVLVGA+VDISY   AGI+++++I++ L+FR+
Sbjct  260  RVVARRLSIKYSKLWVGAEILLFVLVGATVDISYAFKAGIGAVILIFGVLLFRM  313

14) CCU_02390 in NC_021018


> X92982|1|G1|1770129|CAA63558.1|Clostridium_difficile_VPI10463|+|304..1245|cdu2|-|-
Length=313

 Score =  248 bits (926),  Expect = 4e-67, Method: Compositional matrix adjust.
 Identities = 184/318 (58%), Positives = 261/318 (83%), Gaps = 6/318 (1%)

Query  1    MLTSLALIFIVGLAMGAICQRLKLPRIIGMLATGIVLGPYVLDLFDPSILSISADLRkia  60
            MLTSLALIF++G+A G+I +R+KLP ++GML TGI+LGPYVL+L+D SIL IS+DLRKIA
Sbjct  1    MLTSLALIFLLGMASGGIFKRIKLPNLLGMLLTGIILGPYVLNLIDNSILDISSDLRKIA  60

Query  61   liiilikaGlsldlkdlkksGRSAVLLSFVPASFEIIGYILCAPVILGINRTEAAVMGAV  120
            LIIIL +AGLSLD++DLKK GR+AVL+ F+PA+FEIIG I+ AP +LG++  EAAVMGAV
Sbjct  61   LIIILTRAGLSLDINDLKKVGRPAVLMCFIPATFEIIGMIVLAPKLLGVSILEAAVMGAV  120

Query  121  LGAVSPAVVVPRMVNLIEKKYGTDKAIPQMILAGASCDDIFVIVLFTTFLSMAQGGSAHV  180
            +GAVSPA++VP+M++L+E  YGT+K+IPQM+LAG+S DDIFVIV+FT F ++AQG S   
Sbjct  121  VGAVSPAIIVPKMLKLMEEGYGTEKSIPQMLLAGTSIDDIFVIVMFTVFTGLAQGNSISA  180

Query  181  MDFVNIPISIvlgvllgvdvgyglylFFETSYARKHCVRNSMKVIIVLGFSFLLIAIEGW  240
            + F++IP+SI+LGV+ G  +G  L +FF     +K  +R+S K +++L++SFL+I++E  
Sbjct  181  ISFLQIPVSIILGVIAGAVIGICLAVFF-----KKVHMRDSAKGVLLLSISFLMISLETA  235

Query  241  LEGKVSVSGLLAVVAMACVLKLKCPESVSGRLSQKFGKLWLAAEVILFVLVGAAVDIRYT  300
            LEG V+ SGLLAV++++  L++K    V+ RLS K++KLW++AE++LFVLVGA+VDI Y+
Sbjct  236  LEGIVPFSGLLAVMSIGIFLQIKYR-VVARRLSIKYSKLWVGAEILLFVLVGATVDISYA  294

Query  301  LTAGLPALLMIFVALAFR  318
            + AG+ A+++IF  L FR
Sbjct  295  FKAGIGAVILIFGVLLFR  312

15) ACL_0911 in NC_010163


> X92982|1|G1|1770129|CAA63558.1|Clostridium_difficile_VPI10463|+|304..1245|cdu2|-|-
Length=313

 Score =  235 bits (878),  Expect = 2e-63, Method: Compositional matrix adjust.
 Identities = 151/313 (49%), Positives = 251/313 (81%), Gaps = 2/313 (0%)

Query  3    LLSLGIILITGFLAGILFEKIRLPKIVGMIIVGMLMGPSILNIIDGTVLQISGYLRQIAL  62
            L SL++I++ G  +G +F +I+LP+++GM++ G+++GP +LN+ID ++L+IS+ LR+IAL
Sbjct  2    LTSLALIFLLGMASGGIFKRIKLPNLLGMLLTGIILGPYVLNLIDNSILDISSDLRKIAL  61

Query  63   VIILTRSGLSLNIDNLKKIGRPAILMCFVPAVFEIVAITIFAPMLLGVTYPEALLIGSVI  122
            +IILTR+GLSL+I++LKK+GRPA+LMCF+PA FEI+++ ++AP LLGV+  EA ++G+V+
Sbjct  62   IIILTRAGLSLDINDLKKVGRPAVLMCFIPATFEIIGMIVLAPKLLGVSILEAAVMGAVV  121

Query  123  AAVSPAVIIPRMIKYSKTNYGTNKNIPELIMAGSSADDIFVIVLFYAFLGVLKGNTLNTW  182
            +AVSPA+I+P+M+K     YGT+K+IP++++AG+S DDIFVIV+F  F G+ +GN++++ 
Sbjct  122  GAVSPAIIVPKMLKLMEEGYGTEKSIPQMLLAGTSIDDIFVIVMFTVFTGLAQGNSISAI  181

Query  183  SilqipisiilgaiigigvglFMVKIFKK-HTKTMLSNILILLSVSFMLIGLEILIQDVI  241
            S+LQIP+SIILG I G  +G+ +  +FKK H +     +L LLS+SF++I+LE  +++++
Sbjct  182  SFLQIPVSIILGVIAGAVIGICLAVFFKKVHMRDSAKGVL-LLSISFLMISLETALEGIV  240

Query  242  SFSALISIVTTGMVILFKNRTIAHELEEGYHKLWLFFEILLFVLVGISVDVNYAISAGFM  301
            +FS+L+++++ G+ + +K R +A+ L   Y KLW+  EILLFVLVG +VD++YA+ AG+ 
Sbjct  241  PFSGLLAVMSIGIFLQIKYRVVARRLSIKYSKLWVGAEILLFVLVGATVDISYAFKAGIG  300

Query  302  PMIVLMIALVFRM  314
            ++I++   L+FRM
Sbjct  301  AVILIFGVLLFRM  313

16) FMG_1492 in NC_010376


> X92982|1|G1|1770129|CAA63558.1|Clostridium_difficile_VPI10463|+|304..1245|cdu2|-|-
Length=313

 Score =  233 bits (868),  Expect = 1e-62, Method: Compositional matrix adjust.
 Identities = 156/283 (56%), Positives = 227/283 (81%), Gaps = 2/283 (0%)

Query  31   LIVGITLGPFAMNLIDKKILDISSELRTIALVIILTRAGLSLDIDDLKKIGRPAVLMCFV  90
            L+ GI LGP+ +NLID+ ILDISS+LR IAL+IILTRAGLSLDI+DLKK+GRPAVLMCF+
Sbjct  31   LLTGIILGPYVLNLIDNSILDISSDLRKIALIIILTRAGLSLDINDLKKVGRPAVLMCFI  90

Query  91   PAVFEMCAVGIFAPIFLKVDVLDAFiigsiiaavspavvvpRMIRLIEEGYGDEHKIPQL  150
            PA FE+ ++ ++AP +L V +L+A ++G++++AVSPA++VP+M++L+EEGYG E  IPQ+
Sbjct  91   PATFEIIGMIVLAPKLLGVSILEAAVMGAVVGAVSPAIIVPKMLKLMEEGYGTEKSIPQM  150

Query  151  ILAGSSCDDVFCIVVFTSLTSLAQTGDINVFKFIAIPFSILIGSVVGAGIGFVLVKFFKR  210
            +LAG+S DD+F IV+FT +T+LAQ   I+ + F+ IP SI++G + GA IG+ L  FFK+
Sbjct  151  LLAGTSIDDIFVIVMFTVFTGLAQGNSISAISFLQIPVSIILGVIAGAVIGICLAVFFKK  210

Query  211  FHMRDTvkvliilsis--flllelekiTPIPFSGLIAIMALSMVMKKIYEDLAERLSEKY  268
             HMRD+ K +++LSIS   + LE      +PFSGL+A+M++++ ++  Y  +A RLS KY
Sbjct  211  VHMRDSAKGVLLLSISFLMISLETALEGIVPFSGLLAVMSIGIFLQIKYRVVARRLSIKY  270

Query  269  NKLWVGAEIFLFVLVGATVNVKYAINSGIMVVVLVICALIIRM  311
            +KLWVGAEI+LFVLVGATV++ YA+++GI  V+L++  L++RM
Sbjct  271  SKLWVGAEILLFVLVGATVDISYAFKAGIGAVILIFGVLLFRM  313

17) Bmur_2077 in NC_014150


> X92982|1|G1|1770129|CAA63558.1|Clostridium_difficile_VPI10463|+|304..1245|cdu2|-|-
Length=313

 Score =  230 bits (857),  Expect = 9e-62, Method: Compositional matrix adjust.
 Identities = 196/315 (63%), Positives = 280/315 (89%), Gaps = 2/315 (0%)

Query  1    MLLSLALIFLCGMLLGKIFSSLKLPSllgliitgiilgPYCLNlldssilsisadlRELA  60
            ML SLALIFL GM  G IF  +KLP+LLG+++TGIILGPY LNL+D+SIL IS+DLR +A
Sbjct  1    MLTSLALIFLLGMASGGIFKRIKLPNLLGMLLTGIILGPYVLNLIDNSILDISSDLRKIA  60

Query  61   LIIILTRAGLNLNIEDLKKVGRPAILMCFLPASFEIIGMVLIAPRLFNITLFEAALMGsv  120
            LIIILTRAGL+L+I+DLKKVGRPA+LMCF+PA+FEIIGM+++AP+L+ ++++EAA+MG+V
Sbjct  61   LIIILTRAGLSLDINDLKKVGRPAVLMCFIPATFEIIGMIVLAPKLLGVSILEAAVMGAV  120

Query  121  vaavspavlvpKMLKLIDERYGTNKSIPQLLMAGASVDDIFVIVLFASFTSLVKGGSVSV  180
            V+AVSPA++VPKMLKL++E YGT+KSIPQ+L+AG+S+DDIFVIV+F+ FT+L +G S+S 
Sbjct  121  VGAVSPAIIVPKMLKLMEEGYGTEKSIPQMLLAGTSIDDIFVIVMFTVFTGLAQGNSISA  180

Query  181  LNFMKIPTSiilglligviialilTKLFSRFHIRDSAKvviilsisfilvtiENSKFFNG  240
            ++F++IP SIILG++ G +I++ L+ +F + H+RDSAK V++LSISF+++++E +  ++G
Sbjct  181  ISFLQIPVSIILGVIAGAVIGICLAVFFKKVHMRDSAKGVLLLSISFLMISLETA--LEG  238

Query  241  IIGFSGLLAVMSVGAFLKTKRPElskrlslkysklWVAAEIILFVLVGAAVNIKYALNTG  300
            I+ FSGLLAVMS+G FL+ K   +++RLS+KYSKLWV+AEI+LFVLVGA+V+I YA+++G
Sbjct  239  IVPFSGLLAVMSIGIFLQIKYRVVARRLSIKYSKLWVGAEILLFVLVGATVDISYAFKAG  298

Query  301  FTGILLIFAVLIFRM  315
            + +++LIF+VL+FRM
Sbjct  299  IGAVILIFGVLLFRM  313

18) cdu2 in NC_012225


> X92982|1|G1|1770129|CAA63558.1|Clostridium_difficile_VPI10463|+|304..1245|cdu2|-|-
Length=313

 Score =  225 bits (840),  Expect = 2e-60, Method: Compositional matrix adjust.
 Identities = 200/317 (64%), Positives = 268/317 (85%), Gaps = 4/317 (1%)

Query  1    MLLSLALIFLCGMILGKIFSTLKLPSllgliitgiilgPYCFNLLDNSILSISADLRELA  60
            ML SLALIFL GM  G IF  +KLP+LLG+++TGIILGPY +NL+DNSIL IS+DLR +A
Sbjct  1    MLTSLALIFLLGMASGGIFKRIKLPNLLGMLLTGIILGPYVLNLIDNSILDISSDLRKIA  60

Query  61   LIIILTRAGLNLDIEDLKKVGRPAILMCFVPATFEIIGMILVAPKLFDISLLDAALMGsv  120
            LIIILTRAGL+LDI+DLKKVGRPA+LMCF+PATFEIIGMI++APKL+++S+L+AA+MG+V
Sbjct  61   LIIILTRAGLSLDINDLKKVGRPAVLMCFIPATFEIIGMIVLAPKLLGVSILEAAVMGAV  120

Query  121  vaavspavlvpKMLKLIDEKYGTNKSIPQLLMAGASVDDIFVIVLFTSFTSLVKGGSISY  180
            V+AVSPA++VPKMLKL++E YGT+KSIPQ+L+AG+S+DDIFVIV+FT FT+L +G SIS 
Sbjct  121  VGAVSPAIIVPKMLKLMEEGYGTEKSIPQMLLAGTSIDDIFVIVMFTVFTGLAQGNSISA  180

Query  181  LDFIKIPTSiifglllgiiigfilSKFFTRFHIRDSAKVViilsisfilisiensisnlf  240
            + F++IP SII+G++ G +IG+ L+ FF + H+RDSAK V    + + +  +  S+   +
Sbjct  181  ISFLQIPVSIILGVIAGAVIGICLAVFFKKVHMRDSAKGV----LLLSISFLMISLETAL  236

Query  241  ggiigisgllAVMSIGAylkkskeelskrlslkysklWVAAEIMLFVLVGAAVNINYAMK  300
             GI+ +SGLLAVMSIG +L+     +++RLS+KYSKLWV+AEI+LFVLVGA+V+I+YA K
Sbjct  237  EGIVPFSGLLAVMSIGIFLQIKYRVVARRLSIKYSKLWVGAEILLFVLVGATVDISYAFK  296

Query  301  AGALGIILIFTVLIFRM  317
            AG  ++ILIF VL+FRM
Sbjct  297  AGIGAVILIFGVLLFRM  313

19) cdu2 in NC_017243


> X92982|1|G1|1770129|CAA63558.1|Clostridium_difficile_VPI10463|+|304..1245|cdu2|-|-
Length=313

 Score =  217 bits (808),  Expect = 7e-58, Method: Compositional matrix adjust.
 Identities = 203/317 (65%), Positives = 276/317 (88%), Gaps = 4/317 (1%)

Query  1    MLLSLALIFLCGMILGKIFSllklpsllgliitgiilgPYCFNLLDDSILSISADLRELA  60
            ML SLALIFL GM  G IF  +KLP+LLG+++TGIILGPY +NL+D+SIL IS+DLR +A
Sbjct  1    MLTSLALIFLLGMASGGIFKRIKLPNLLGMLLTGIILGPYVLNLIDNSILDISSDLRKIA  60

Query  61   LIIILTRAGLNLDIEDLKKVGRPAILMCFVPATFEIIGMILIAPKLFDISLLDAALMGsv  120
            LIIILTRAGL+LDI+DLKKVGRPA+LMCF+PATFEIIGMI++APKL+++S+L+AA+MG+V
Sbjct  61   LIIILTRAGLSLDINDLKKVGRPAVLMCFIPATFEIIGMIVLAPKLLGVSILEAAVMGAV  120

Query  121  vaavspavlvpKMLKLIDEKYGTNKSIPQLLMAGASVDDIFVIVLFTSFTSLVKGGNISY  180
            V+AVSPA++VPKMLKL++E YGT+KSIPQ+L+AG+S+DDIFVIV+FT FT+L +G +IS 
Sbjct  121  VGAVSPAIIVPKMLKLMEEGYGTEKSIPQMLLAGTSIDDIFVIVMFTVFTGLAQGNSISA  180

Query  181  LDFVKIPTSiifglllgviigfilSKFFSRFHIRDSAKvviilsisfilvsiEnsisnlf  240
            + F++IP SII+G++ G +IG+ L+ FF + H+RDSAK V++LSISF+++S+E      +
Sbjct  181  ISFLQIPVSIILGVIAGAVIGICLAVFFKKVHMRDSAKGVLLLSISFLMISLE----TAL  236

Query  241  ggiigisgllAVMSIGAylkkskeelskrlslkysklWVAAEIMLFVLVGAAVNINYAMK  300
             GI+ +SGLLAVMSIG +L+     +++RLS+KYSKLWV+AEI+LFVLVGA+V+I+YA K
Sbjct  237  EGIVPFSGLLAVMSIGIFLQIKYRVVARRLSIKYSKLWVGAEILLFVLVGATVDISYAFK  296

Query  301  SGALGIILIFAVLIFRM  317
            +G  ++ILIF+VL+FRM
Sbjct  297  AGIGAVILIFGVLLFRM  313

20) BP951000_0101 in NC_014330


> X92982|1|G1|1770129|CAA63558.1|Clostridium_difficile_VPI10463|+|304..1245|cdu2|-|-
Length=313

 Score =  215 bits (801),  Expect = 2e-57, Method: Compositional matrix adjust.
 Identities = 204/317 (65%), Positives = 280/317 (89%), Gaps = 4/317 (1%)

Query  1    MLLSLALIFLCGMILGKIFSllklpsllgliitgivlgPYClnlldnsilsisadlRELA  60
            ML SLALIFL GM  G IF  +KLP+LLG+++TGI+LGPY LNL+DNSIL IS+DLR +A
Sbjct  1    MLTSLALIFLLGMASGGIFKRIKLPNLLGMLLTGIILGPYVLNLIDNSILDISSDLRKIA  60

Query  61   LIIILTRAGLNLDIEDLKKVGRPAILMCFVPASFEIIGMILIAPKLFDISLLDAALMGsv  120
            LIIILTRAGL+LDI+DLKKVGRPA+LMCF+PA+FEIIGMI++APKL+++S+L+AA+MG+V
Sbjct  61   LIIILTRAGLSLDINDLKKVGRPAVLMCFIPATFEIIGMIVLAPKLLGVSILEAAVMGAV  120

Query  121  vaavspavlvpKMLKLIDEKYGTNKSIPQLLMAGASVDDIFVIVLFTSFTSLVKGGNISY  180
            V+AVSPA++VPKMLKL++E YGT+KSIPQ+L+AG+S+DDIFVIV+FT FT+L +G +IS 
Sbjct  121  VGAVSPAIIVPKMLKLMEEGYGTEKSIPQMLLAGTSIDDIFVIVMFTVFTGLAQGNSISA  180

Query  181  LDFVKIPTSiifglllgiiigfilSKFFTKFHIRDSAKvviilsisfilvsiETSISNLF  240
            + F++IP SII+G++ G +IG+ L+ FF K H+RDSAK V++LSISF+++S+ET++    
Sbjct  181  ISFLQIPVSIILGVIAGAVIGICLAVFFKKVHMRDSAKGVLLLSISFLMISLETALE---  237

Query  241  GGVIGISGLLAVMSIGAylkkskeelskrlslkysklWVAAEIILFVLVGAAVNINYAFN  300
             G++ +SGLLAVMSIG +L+     +++RLS+KYSKLWV+AEI+LFVLVGA+V+I+YAF+
Sbjct  238  -GIVPFSGLLAVMSIGIFLQIKYRVVARRLSIKYSKLWVGAEILLFVLVGATVDISYAFK  296

Query  301  AGVLGIVLIFAVLIFRM  317
            AG+ +++LIF+VL+FRM
Sbjct  297  AGIGAVILIFGVLLFRM  313

21) cdu1 in NC_018607


> X92982|1|G1|1770129|CAA63558.1|Clostridium_difficile_VPI10463|+|304..1245|cdu2|-|-
Length=313

 Score =  215 bits (801),  Expect = 2e-57, Method: Compositional matrix adjust.
 Identities = 204/317 (65%), Positives = 280/317 (89%), Gaps = 4/317 (1%)

Query  1    MLLSLALIFLCGMILGKIFSllklpsllgliitgivlgPYClnlldnsilsisadlRELA  60
            ML SLALIFL GM  G IF  +KLP+LLG+++TGI+LGPY LNL+DNSIL IS+DLR +A
Sbjct  1    MLTSLALIFLLGMASGGIFKRIKLPNLLGMLLTGIILGPYVLNLIDNSILDISSDLRKIA  60

Query  61   LIIILTRAGLNLDIEDLKKVGRPAILMCFVPASFEIIGMILIAPKLFDISLLDAALMGsv  120
            LIIILTRAGL+LDI+DLKKVGRPA+LMCF+PA+FEIIGMI++APKL+++S+L+AA+MG+V
Sbjct  61   LIIILTRAGLSLDINDLKKVGRPAVLMCFIPATFEIIGMIVLAPKLLGVSILEAAVMGAV  120

Query  121  vaavspavlvpKMLKLIDEKYGTNKSIPQLLMAGASVDDIFVIVLFTSFTSLVKGGNISY  180
            V+AVSPA++VPKMLKL++E YGT+KSIPQ+L+AG+S+DDIFVIV+FT FT+L +G +IS 
Sbjct  121  VGAVSPAIIVPKMLKLMEEGYGTEKSIPQMLLAGTSIDDIFVIVMFTVFTGLAQGNSISA  180

Query  181  LDFVKIPTSiifglllgiiigfilSKFFTKFHIRDSAKvviilsisfilvsiETSISNLF  240
            + F++IP SII+G++ G +IG+ L+ FF K H+RDSAK V++LSISF+++S+ET++    
Sbjct  181  ISFLQIPVSIILGVIAGAVIGICLAVFFKKVHMRDSAKGVLLLSISFLMISLETALE---  237

Query  241  GGVIGISGLLAVMSIGAylkkskeelskrlslkysklWVAAEIILFVLVGAAVNINYAFN  300
             G++ +SGLLAVMSIG +L+     +++RLS+KYSKLWV+AEI+LFVLVGA+V+I+YAF+
Sbjct  238  -GIVPFSGLLAVMSIGIFLQIKYRVVARRLSIKYSKLWVGAEILLFVLVGATVDISYAFK  296

Query  301  AGVLGIVLIFAVLIFRM  317
            AG+ +++LIF+VL+FRM
Sbjct  297  AGIGAVILIFGVLLFRM  313

22) BPP43_02595 in NC_019908


> X92982|1|G1|1770129|CAA63558.1|Clostridium_difficile_VPI10463|+|304..1245|cdu2|-|-
Length=313

 Score =  215 bits (801),  Expect = 2e-57, Method: Compositional matrix adjust.
 Identities = 205/317 (65%), Positives = 280/317 (89%), Gaps = 4/317 (1%)

Query  1    MLLSLALIFLCGMILGKIFSllklpsllgliitgivlgPYClnlldnsilsisadlRELA  60
            ML SLALIFL GM  G IF  +KLP+LLG+++TGI+LGPY LNL+DNSIL IS+DLR +A
Sbjct  1    MLTSLALIFLLGMASGGIFKRIKLPNLLGMLLTGIILGPYVLNLIDNSILDISSDLRKIA  60

Query  61   LIIILTRAGLNLDIEDLKKVGRPAILMCFVPASFEIIGMILIAPKLFDISLLDAALMGav  120
            LIIILTRAGL+LDI+DLKKVGRPA+LMCF+PA+FEIIGMI++APKL+++S+L+AA+MGAV
Sbjct  61   LIIILTRAGLSLDINDLKKVGRPAVLMCFIPATFEIIGMIVLAPKLLGVSILEAAVMGAV  120

Query  121  vaavspavlvpKMLKLIDEKYGTNKSIPQLLMAGASVDDIFVIVLFTSFTSLVKGGNISY  180
            V+AVSPA++VPKMLKL++E YGT+KSIPQ+L+AG+S+DDIFVIV+FT FT+L +G +IS 
Sbjct  121  VGAVSPAIIVPKMLKLMEEGYGTEKSIPQMLLAGTSIDDIFVIVMFTVFTGLAQGNSISA  180

Query  181  LDFVKIPTSiifglllgiiigfilSKFFTKFHIRDSAKvviilsisfilvsiETSISNLF  240
            + F++IP SII+G++ G +IG+ L+ FF K H+RDSAK V++LSISF+++S+ET++    
Sbjct  181  ISFLQIPVSIILGVIAGAVIGICLAVFFKKVHMRDSAKGVLLLSISFLMISLETALE---  237

Query  241  GGVIGISGLLAVMSIGAylkkskeelskrlslkysklWVAAEIILFVLVGAAVNINYAFN  300
             G++ +SGLLAVMSIG +L+     +++RLS+KYSKLWV+AEI+LFVLVGA+V+I+YAF+
Sbjct  238  -GIVPFSGLLAVMSIGIFLQIKYRVVARRLSIKYSKLWVGAEILLFVLVGATVDISYAFK  296

Query  301  AGVLGIVLIFAVLIFRM  317
            AG+ +++LIF+VL+FRM
Sbjct  297  AGIGAVILIFGVLLFRM  313

23) HMPREF9243_0706 in NC_015278


> X92982|1|G1|1770129|CAA63558.1|Clostridium_difficile_VPI10463|+|304..1245|cdu2|-|-
Length=313

 Score =  213 bits (791),  Expect = 2e-56, Method: Compositional matrix adjust.
 Identities = 167/312 (54%), Positives = 248/312 (80%), Gaps = 1/312 (0%)

Query  2    LLLSFAYIFILGLLVERLCQSLRIPSLVGYLFLGILLGPYALNLLDPTILDLSADLRQVA  61
            +L S+A IF+LG+    + + +++P+L+G L+ GI+LGPY LNL+D +ILD+S+DLR++A
Sbjct  1    MLTSLALIFLLGMASGGIFKRIKLPNLLGMLLTGIILGPYVLNLIDNSILDISSDLRKIA  60

Query  62   LIIILTRAGLSLDIRGLIKVGRPALLMCFLPATFEMIATSLLAPSILGISQADalvlgav  121
            LIIILTRAGLSLDI +L KVGRPA+LMCF+PATFE+I+  +LAP +LG+S  +A V+GAV
Sbjct  61   LIIILTRAGLSLDINDLKKVGRPAVLMCFIPATFEIIGMIVLAPKLLGVSILEAAVMGAV  120

Query  122  lgavspavvvpKMLKLIDEGYGTKKQIPQLILAGSSADDIYVLVLFSSFLAVAQGGSFQV  181
            +GAVSPA++VPKMLKL++EGYGT K IPQ++LAG+S DDI+V+V+F+ F ++AQG S+  
Sbjct  121  VGAVSPAIIVPKMLKLMEEGYGTEKSIPQMLLAGTSIDDIFVIVMFTVFTGLAQGNSISA  180

Query  182  TQLLTIPISIalgllvggllgaglNSLFDRFDFSTAKQlilllslsfvlvsvEKILPAL-  240
              +L IP+SI LG++ G+++G  L  +F + +   + + +LLLS+SF+++S+E  L ++ 
Sbjct  181  ISFLQIPVSIILGVIAGAVIGICLAVFFKKVHMRDSAKGVLLLSISFLMISLETALEGIV  240

Query  241  PFSGILAVMAMGLVINRLDSEKAVNLGQYYNKLWIPGEILLFVLVGASVNITYAFQAGWQ  300
            PFSG+LAVM++G+ ++      A  L+  Y+KLW+ +EILLFVLVGA+V+I+YAF+AG  
Sbjct  241  PFSGLLAVMSIGIFLQIKYRVVARRLSIKYSKLWVGAEILLFVLVGATVDISYAFKAGIG  300

Query  301  PVLLIGMVLIFR  312
            +V+LI  VL+FR
Sbjct  301  AVILIFGVLLFR  312

24) Apre_1535 in NC_013171


> X92982|1|G1|1770129|CAA63558.1|Clostridium_difficile_VPI10463|+|304..1245|cdu2|-|-
Length=313

 Score =  204 bits (760),  Expect = 4e-54, Method: Compositional matrix adjust.
 Identities = 140/313 (45%), Positives = 232/313 (75%), Gaps = 0/313 (0%)

Query  1    MLTNVGLIMIAGLIGSKLFSKIKLAPILGMLLAGIIISPNLLGLVKGDIGALSKDLRQIA  60
            MLT+++LI + G+ ++ +F +IKL+ +LGMLL+GII++P +L L+   I  +S DLR+IA
Sbjct  1    MLTSLALIFLLGMASGGIFKRIKLPNLLGMLLTGIILGPYVLNLIDNSILDISSDLRKIA  60

Query  61   LVVILSRAGLSLSFDRLREVGLPAILMTFLPASFEMVAITFLANKIFNLPYIDSAILGAV  120
            L++IL+RAGLSL ++ L+ VG PA+LM F+PA+FE++++  LA K++ ++ +++A++GAV
Sbjct  61   LIIILTRAGLSLDINDLKKVGRPAVLMCFIPATFEIIGMIVLAPKLLGVSILEAAVMGAV  120

Query  121  LAAVSPAIVVPRMIRLIEEGYGEDKKIPEIILAGSSIDDVYTIVFFTVFINLKLGGQASM  180
            ++AVSPAI+VP+M++L+EEGYG +K IP+++LAG+SIDD++ IV FTVF  L  G   S 
Sbjct  121  VGAVSPAIIVPKMLKLMEEGYGTEKSIPQMLLAGTSIDDIFVIVMFTVFTGLAQGNSISA  180

Query  181  GSFLNipisiitgilfgiilgyildiiYSKINLGKIYKVIVLMGLSFFILEIEDLAKGYI  240
             SFL+IP+SII G++ G ++G  L +++ K+++    K ++L+++SF+++ +E    G +
Sbjct  181  ISFLQIPVSIILGVIAGAVIGICLAVFFKKVHMRDSAKGVLLLSISFLMISLETALEGIV  240

Query  241  AFSGLVAIISTTMTIKKLDQDLADELLDVYGSLWELFEIFLFVLVGITVDLSIIGEEILP  300
            +FSGL+A++S  + ++   + +A  L   Y+ LW   EI+LFVLVG TVD+S      + 
Sbjct  241  PFSGLLAVMSIGIFLQIKYRVVARRLSIKYSKLWVGAEILLFVLVGATVDISYAFKAGIG  300

Query  301  ALLLITGGLIFRM  313
            A++LI G L+FRM
Sbjct  301  AVILIFGVLLFRM  313

25) Hprae_1491 in NC_017455


> X92982|1|G1|1770129|CAA63558.1|Clostridium_difficile_VPI10463|+|304..1245|cdu2|-|-
Length=313

 Score =  196 bits (727),  Expect = 2e-51, Method: Compositional matrix adjust.
 Identities = 134/278 (49%), Positives = 220/278 (80%), Gaps = 1/278 (0%)

Query  16   GRFFDKLKLPALLGMLVIGMIIGPYGFDLITQDILNISSDLRMIALIVILIRAGLGIEKE  75
            G +F ++KLP LLGML+ G+I+GPY ++LI + IL+ISSDLR IALI+IL RAGL+++ +
Sbjct  16   GGIFKRIKLPNLLGMLLTGIILGPYVLNLIDNSILDISSDLRKIALIIILTRAGLSLDIN  75

Query  76   TLKKVGFPAVKLSFIPGLMEGaaiilaaivllKFEFIEAGILafiiaavspavvvpQMLN  135
             LKKVG PAV + FIP+  E  ++I+ A  LL   ++EA++++ +++AVSPA++VP+ML+
Sbjct  76   DLKKVGRPAVLMCFIPATFEIIGMIVLAPKLLGVSILEAAVMGAVVGAVSPAIIVPKMLK  135

Query  136  LIEQNKGTKKGIPTLILAGASIDDVVAITIFSTFLSLYGGQQISILKQILNIPLAILMGV  195
            L+E+  GT K+IP ++LAG+SIDD+  I +F+ F +L  G+ IS +  +L+IP++I++GV
Sbjct  136  LMEEGYGTEKSIPQMLLAGTSIDDIFVIVMFTVFTGLAQGNSISAIS-FLQIPVSIILGV  194

Query  196  ILGMLIALILIYFFRKYNIRDTKKVLVILSFGILMHSLESLLEDILPIATLLGIMVIGFV  255
            I G +I++ L  FF+K ++RD+ K +++LS+++LM SLE+ LE+I+P++ LL++M IG+ 
Sbjct  195  IAGAVIGICLAVFFKKVHMRDSAKGVLLLSISFLMISLETALEGIVPFSGLLAVMSIGIF  254

Query  256  IREKYPVLGERLAVKFNKIWVFAELMLFVLIGAAVNIK  293
            ++ KY V++ RL++K++K+WV AE++LFVL+GA+V+I 
Sbjct  255  LQIKYRVVARRLSIKYSKLWVGAEILLFVLVGATVDIS  292

26) Rumal_1338 in NC_014833


> X92982|1|G1|1770129|CAA63558.1|Clostridium_difficile_VPI10463|+|304..1245|cdu2|-|-
Length=313

 Score =  193 bits (716),  Expect = 1e-50, Method: Compositional matrix adjust.
 Identities = 151/302 (50%), Positives = 240/302 (80%), Gaps = 10/302 (3%)

Query  1    MLFSFAVIFLAGLGAGALFQMMKLPRVIGMLAAGIVVGPFVLGLLDDKVLSVSGELRQTa  60
            ML S+A+IFL G+++G++F+ +KLP ++GML +GI++GP+VL L+D+ +L +S++LR+ A
Sbjct  1    MLTSLALIFLLGMASGGIFKRIKLPNLLGMLLTGIILGPYVLNLIDNSILDISSDLRKIA  60

Query  61   liiilikaglalDLSDLKKVGRSAVLMSFLPACFEMTGYLIFAPFLLGTSLTDSALMGav  120
            LIIIL +AGL+LD++DLKKVGR+AVLM F+PA FE+ G +++AP LLG S+ ++A+MGAV
Sbjct  61   LIIILTRAGLSLDINDLKKVGRPAVLMCFIPATFEIIGMIVLAPKLLGVSILEAAVMGAV  120

Query  121  lsavspavvvprmvsLIEKKRGTEKGIPQMILAGASCDDVFVIVLFSTFLTMAQGGGAKL  180
            ++AVSPA++VP+M+ L+E   GTEK+IPQM+LAG+S DD+FVIV+F+ F  +AQG +   
Sbjct  121  VGAVSPAIIVPKMLKLMEEGYGTEKSIPQMLLAGTSIDDIFVIVMFTVFTGLAQGNSISA  180

Query  181  SGLLDIPVSIalglllgacagI--MVYMLFEYSFRRGMKIRGSIKAIVLLSAAFLLMTAE  238
             ++L+IPVSI LG++ GA  GI   V+      F++ + +R+S K+++LLS +FL+++ E
Sbjct  181  ISFLQIPVSIILGVIAGAVIGICLAVF------FKK-VHMRDSAKGVLLLSISFLMISLE  233

Query  239  SAAKPYAAVSGLLAVVAMACVLKLKSEVSVTKGLSEKFGKIWIAAEVILFVMVGAAVDIR  298
            +A     + SGLLAV++++  L++K  V V++ LS K++K+W++AE++LFV+VGA+VDI 
Sbjct  234  TALEGIVPFSGLLAVMSIGIFLQIKYRV-VARRLSIKYSKLWVGAEILLFVLVGATVDIS  292

Query  299  YT  300
            Y+
Sbjct  293  YA  294

27) MTBMA_c11540 in NC_014408


> X92982|1|G1|1770129|CAA63558.1|Clostridium_difficile_VPI10463|+|304..1245|cdu2|-|-
Length=313

 Score =  142 bits (522),  Expect = 3e-35, Method: Compositional matrix adjust.
 Identities = 124/294 (43%), Positives = 219/294 (75%), Gaps = 1/294 (0%)

Query  7    SVAVIILLGLLFSRVFNRIGIPGITGMLVLGMLIGPHGLNLISKSIMDVSPDlrvialii  66
            S+A+I+LLG+  + +F+RI +P + GML+ G+++GP  LNLI +SI+D+S+DLR IALII
Sbjct  4    SLALIFLLGMASGGIFKRIKLPNLLGMLLTGIILGPYVLNLIDNSILDISSDLRKIALII  63

Query  67   illraGFGINLESLRKVGMTAVKMSFIPDVVEGFAVMFAAHYILGLPLIEAGILGFviaa  126
            IL RAG++++++ L+KVG  AV M FIP   E ++++  A  +LG++++EA+++G V++A
Sbjct  64   ILTRAGLSLDINDLKKVGRPAVLMCFIPATFEIIGMIVLAPKLLGVSILEAAVMGAVVGA  123

Query  127  vspavivpQMLSFIERRMGTAKGIPTIILTGASVDDVVSITLFSVFLGMYQGQQVNFLVE  186
            VSPA+IVP+ML ++E   GT K+IP ++L+G+S+DD+  I +F+VF G+ QG+ ++  + 
Sbjct  124  VSPAIIVPKMLKLMEEGYGTEKSIPQMLLAGTSIDDIFVIVMFTVFTGLAQGNSIS-AIS  182

Query  187  ALGVPMSiltgivaglalglalvylFRKFEIRNTEKTLIILGAAILLKNAGDILSAHVPI  246
             L +P+SI+ G++AG  +G+ L  +F+K ++R++ K +++L+ ++L+ +    L + VP+
Sbjct  183  FLQIPVSIILGVIAGAVIGICLAVFFKKVHMRDSAKGVLLLSISFLMISLETALEGIVPF  242

Query  247  AALVGVMVTGLVILERMPETGLKLSEKFNKVWIFAEILLFVLVGAAVDVKLIFQ  300
            ++L++VM  G+ +  +    + +LS K++K+W+ AEILLFVLVGA+VD+   F+
Sbjct  243  SGLLAVMSIGIFLQIKYRVVARRLSIKYSKLWVGAEILLFVLVGATVDISYAFK  296

28) Amet_4404 in NC_009633


> X92982|1|G1|1770129|CAA63558.1|Clostridium_difficile_VPI10463|+|304..1245|cdu2|-|-
Length=313

 Score =  136 bits (500),  Expect = 2e-33, Method: Compositional matrix adjust.
 Identities = 135/310 (44%), Positives = 225/310 (73%), Gaps = 1/310 (0%)

Query  4    SLAMIMVLGLVFSKLFTKVKlpgllgmlvlgillgPYGMDWLHEDLLTISGDlrkialii  63
            SLA+I +LG+  + +F ++KLP LLGML+ GI+LGPY ++ +++ +L IS+DLRKIALII
Sbjct  4    SLALIFLLGMASGGIFKRIKLPNLLGMLLTGIILGPYVLNLIDNSILDISSDLRKIALII  63

Query  64   illraglgikrktitkigitaikFSFIPVLFEGFAIMFLGSYILNISLIEAGILGFIIAA  123
            IL RAGL++  + + K+G  A+   FIP  FE ++++ L++ +L +S++EA+++G +++A
Sbjct  64   ILTRAGLSLDINDLKKVGRPAVLMCFIPATFEIIGMIVLAPKLLGVSILEAAVMGAVVGA  123

Query  124  VSPAVIVPQMLDFIDQGKGQEKGIPTLILAGASIDDVVAITIFSAFLGMYGGANINITTQ  183
            VSPA+IVP+ML ++++G G EK+IP ++LAG+SIDD+  I +F+ F G+  G +I+  + 
Sbjct  124  VSPAIIVPKMLKLMEEGYGTEKSIPQMLLAGTSIDDIFVIVMFTVFTGLAQGNSISAISF  183

Query  184  ilsipisiilgilmglvvalgliYLFSHYHLRDTKKVLIMLGAAITLTTLENALEGVVPM  243
            +      I+  I  +++     ++ F   H+RD+ K +++L+ ++ + +LE ALEG+VP 
Sbjct  184  LQIPVSIILGVIAGAVIGICLAVF-FKKVHMRDSAKGVLLLSISFLMISLETALEGIVPF  242

Query  244  AGLLGVMAIGFIILEKTPSVAQRLSSKLNKIWVLAELVLFVLVGAAVNIYVALDAGFVGV  303
            +GLL+VM+IG+++  K   VA+RLS K +K+WV AE++LFVLVGA+V+I  A+ AG+ +V
Sbjct  243  SGLLAVMSIGIFLQIKYRVVARRLSIKYSKLWVGAEILLFVLVGATVDISYAFKAGIGAV  302

Query  304  IIISVGLLAR  313
            I+I   LL R
Sbjct  303  ILIFGVLLFR  312

29) CTC02161 in NC_004557


> X92982|1|G1|1770129|CAA63558.1|Clostridium_difficile_VPI10463|+|304..1245|cdu2|-|-
Length=313

 Score =  135 bits (497),  Expect = 3e-33, Method: Compositional matrix adjust.
 Identities = 135/281 (49%), Positives = 217/281 (78%), Gaps = 1/281 (0%)

Query  19   FEKIKlpgllgmiilgtiigPYGLNWLHGDMINVSADlrkialiiillraglgiNKKDLK  78
            F +IKLP LLGM++ G I+GPY LN ++  ++++S+DLRKIALIIIL RAGL+++ +DLK
Sbjct  19   FKRIKLPNLLGMLLTGIILGPYVLNLIDNSILDISSDLRKIALIIILTRAGLSLDINDLK  78

Query  79   KVGKTAFKMSCVPGIIEGFSIAFVSVKLLEFSFIEGGMLGFIIaavspavvvpsMLNLLE  138
            KVG+ A  M  +P+ +E +++  ++ KLL  S++E++++G +++AVSPA++VP ML+L+E
Sbjct  79   KVGRPAVLMCFIPATFEIIGMIVLAPKLLGVSILEAAVMGAVVGAVSPAIIVPKMLKLME  138

Query  139  SSIGTNKGIPTLILAGASIDDIFAITIFSTFLGLYSGANINIGIQLLNIPVSiilgiiag  198
             + GT+K+IP ++LAG+SIDDIF I +F+ F GL  G +I+ +I +L+IPVSIILG+IAG
Sbjct  139  EGYGTEKSIPQMLLAGTSIDDIFVIVMFTVFTGLAQGNSIS-AISFLQIPVSIILGVIAG  197

Query  199  giigFTMVRVFSKYHIRDTKKVLLILGTSILFTELEKVLKTKIEIASLLGVMTIGFVIIK  258
            ++IG+ +   F K H+RD+ K +L+L+ S+L   LE  L   + +++LL+VM+IG+ +  
Sbjct  198  AVIGICLAVFFKKVHMRDSAKGVLLLSISFLMISLETALEGIVPFSGLLAVMSIGIFLQI  257

Query  259  KIPDVGKGLALKFNKIWIFAEILLFVLVGAEVNVNVAINAG  299
            K   V++ L++K++K+W+ AEILLFVLVGA V+++ A++AG
Sbjct  258  KYRVVARRLSIKYSKLWVGAEILLFVLVGATVDISYAFKAG  298

30) Sterm_3197 in NC_013517


> X92982|1|G1|1770129|CAA63558.1|Clostridium_difficile_VPI10463|+|304..1245|cdu2|-|-
Length=313

 Score =  130 bits (478),  Expect = 9e-32, Method: Compositional matrix adjust.
 Identities = 132/293 (46%), Positives = 220/293 (76%), Gaps = 1/293 (0%)

Query  18   IFTKLKLPGFLGMIILGAAAGPYGFNILDKNLIEISGElrtialiiillraglgiNRNEL  77
            IF ++KLP +LGM++ G   GPY +N++D+++++IS++LR IALIIIL RAGL+++ N+L
Sbjct  18   IFKRIKLPNLLGMLLTGIILGPYVLNLIDNSILDISSDLRKIALIIILTRAGLSLDINDL  77

Query  78   KKVGPLAVKFSCIPGLIEGFTIAFLSMKLLGFSFVEGGMLGFIIaavspavvvpFMIFLS  137
            KKVG  AV    IP+ +E + +  L+ KLLG S++E++++G +++AVSPA++VP M+ L 
Sbjct  78   KKVGRPAVLMCFIPATFEIIGMIVLAPKLLGVSILEAAVMGAVVGAVSPAIIVPKMLKLM  137

Query  138  EKGIGMKKGISTIILAGASADDVFAITLFTVFLGLYGGSSVNPVFQllgiplsiilgiav  197
            E G G  K+I+ ++LAG+S DD+F I +FTVF GL  G+S++++  +L IP+SIILG+  
Sbjct  138  EEGYGTEKSIPQMLLAGTSIDDIFVIVMFTVFTGLAQGNSISAI-SFLQIPVSIILGVIA  196

Query  198  gigaglilvRIFRKFHIRDTKKVLIILSISIFLKGMENFLHDKVEIASLIGVMTVGVVIL  257
            G   G+ L  +F+K H+RD+ K +++LSIS+++ ++E  L++ V +++L++VM++G+ + 
Sbjct  197  GAVIGICLAVFFKKVHMRDSAKGVLLLSISFLMISLETALEGIVPFSGLLAVMSIGIFLQ  256

Query  258  EKLPEAAERLSKKFNKIWVFAELLLFVLVGAQVNIHVALNAGLTGFLIILAGL  310
             K    A RLS K++K+WV AE+LLFVLVGA V+I  A++AG+ + ++I++ L
Sbjct  257  IKYRVVARRLSIKYSKLWVGAEILLFVLVGATVDISYAFKAGIGAVILIFGVL  309

31) Clocl_2942 in NC_016627


> X92982|1|G1|1770129|CAA63558.1|Clostridium_difficile_VPI10463|+|304..1245|cdu2|-|-
Length=313

 Score =  117 bits (426),  Expect = 1e-27, Method: Compositional matrix adjust.
 Identities = 137/293 (47%), Positives = 226/293 (78%), Gaps = 1/293 (0%)

Query  1    MAASLAMILLLGLPAKKMFEklklpgllgmlilgvligpYGLNLLQRNMLQissdlrsia  60
            M +SLA+I+LLG+++  +F ++KLP LLGML+ G+++GPY LNL++ ++L+ISSDLR IA
Sbjct  1    MLTSLALIFLLGMASGGIFKRIKLPNLLGMLLTGIILGPYVLNLIDNSILDISSDLRKIA  60

Query  61   liiillraglglNKDVLKNVGVPALKMSCIPGLIEGLFIALASVYFLDFSFSQGGMLGFI  120
            LIIIL RAGL+L+ + LK+VG PA+ M  IP+ +E + + + +  +L+ S+ +++++G +
Sbjct  61   LIIILTRAGLSLDINDLKKVGRPAVLMCFIPATFEIIGMIVLAPKLLGVSILEAAVMGAV  120

Query  121  IaavspavvvpFMLKLMESNIGTKNGIPTLILAGVSIDDVFAITVFSAFWGLYSGTDMNI  180
            ++AVSPA++VP MLKLME   GT ++IP ++LAG SIDD+F I +F+ F GL  G  ++ 
Sbjct  121  VGAVSPAIIVPKMLKLMEEGYGTEKSIPQMLLAGTSIDDIFVIVMFTVFTGLAQGNSIS-  179

Query  181  GIQLINIPisillgimagiilgFVLINIFKRFNIRDTKKVLLLLGFSILLNQLEVVMKTK  240
            +I +++IP+SI+LG++AG ++G+ L  +FK+ ++RD+ K +LLL++S+L+  LE  +   
Sbjct  180  AISFLQIPVSIILGVIAGAVIGICLAVFFKKVHMRDSAKGVLLLSISFLMISLETALEGI  239

Query  241  IQIASLLGVMTVGFILTEKLPDVGRKLSDKLNKIWVFAEILLFVLVGAEVNVG  293
            + +++LL+VM++G++L  K   V+R+LS K +K+WV AEILLFVLVGA V+++
Sbjct  240  VPFSGLLAVMSIGIFLQIKYRVVARRLSIKYSKLWVGAEILLFVLVGATVDIS  292

32) MTH760 in NC_000916


> X92982|1|G1|1770129|CAA63558.1|Clostridium_difficile_VPI10463|+|304..1245|cdu2|-|-
Length=313

 Score =  105 bits (382),  Expect = 3e-24, Method: Compositional matrix adjust.
 Identities = 128/310 (42%), Positives = 228/310 (74%), Gaps = 1/310 (0%)

Query  7    SVAVIILLGLLFNRVFTRARlpgilgmlilgiligphglnliSKSIMDISPDlrvialii  66
            S+A+I+LLG+    +F R +LP +LGML+ GI++GP  LNLI +SI+DIS+DLR IALII
Sbjct  4    SLALIFLLGMASGGIFKRIKLPNLLGMLLTGIILGPYVLNLIDNSILDISSDLRKIALII  63

Query  67   illraGFGINLESLRKVGMTAVKMSFIPDVFEGLAVMVASHYILGLPIIEAGILGFviaa  126
            IL RAG++++++ L+KVG  AV M FIP  FE ++++V +  +LG++I+EA+++G V++A
Sbjct  64   ILTRAGLSLDINDLKKVGRPAVLMCFIPATFEIIGMIVLAPKLLGVSILEAAVMGAVVGA  123

Query  127  vspavivpQMLSFIERRMGTAKGIPTIILTGASVDDVVSITLFSVFLGIYQGQQVNLLVE  186
            VSPA+IVP+ML ++E   GT K+IP ++L+G+S+DD+  I +F+VF G+ QG+ ++  + 
Sbjct  124  VSPAIIVPKMLKLMEEGYGTEKSIPQMLLAGTSIDDIFVIVMFTVFTGLAQGNSIS-AIS  182

Query  187  AIGVPLSiltgitgglalglalVYLFRRFEIRNTEKTLIILGAAILLKNMGDLISTYLPi  246
             + +P+SI+ G+ +G  +G+ L  +F++ ++R++ K +++L+ ++L+ ++   +   +P+
Sbjct  183  FLQIPVSIILGVIAGAVIGICLAVFFKKVHMRDSAKGVLLLSISFLMISLETALEGIVPF  242

Query  247  aalvgvmvvglviLERMPETGLKLSEKFNKVWIFAEILLFVLVGAQVDVRLIFHVGLLGL  306
            ++L++VM +G+ +  +    + +LS K++K+W+ AEILLFVLVGA VD+   F  G+ ++
Sbjct  243  SGLLAVMSIGIFLQIKYRVVARRLSIKYSKLWVGAEILLFVLVGATVDISYAFKAGIGAV  302

Query  307  AVITAGLMVR  316
             +I + L+ R
Sbjct  303  ILIFGVLLFR  312