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PAthogenisity Island DataBase (PAI DB)

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Homologs of spiR gene of U51927

protein-level

Hit (GenBank Accn)

Product

Source Genome

Eval.

Ident.(%)

1) CFSAN002050_13355
( YP_008260582.1 )

transcriptional regulator

NC_021818
(Salmonella enterica CFSAN002050)

0.0

2) SPAB_01934
( YP_001588157.1 )

hypothetical protein

NC_010102
(Salmonella enterica SGSC4150; SPB7)

0.0

3) SeAg_B1779
( YP_002146648.1 )

secretion system regulator:Sensor component

NC_011149
(Salmonella enterica SL483)

0.0

4) SSPA1359
( YP_002142198.1 )

two-component sensor kinase

NC_011147
(Salmonella enterica AKU12601)

0.0

5) ssrA
( YP_150712.1 )

two-component sensor kinase

NC_006511
(Salmonella enterica ATCC 9150)

0.0

6) SBOV13911
( YP_008505259.1 )

hypothetical protein

NC_022241
(Salmonella enterica 3114)

0.0

7) SE451236_12825
( YP_008265591.1 )

transcriptional regulator

NC_021820
(Salmonella enterica 08-1736)

0.0

100

8) ssrA
( YP_005237261.1 )

sensor kinase

NC_016856
(Salmonella enterica 14028S)

0.0

100

9) spiR
( YP_005396792.1 )

two-component sensor kinase

NC_017046
(Salmonella enterica 798)

0.0

100

10) CFSAN001921_10185
( YP_008255411.1 )

transcriptional regulator

NC_021814
(Salmonella enterica CFSAN001921)

0.0

100

11) ssrA
( NP_460357.1 )

sensor kinase

NC_003197
(Salmonella enterica LT2)

0.0

100

12) spiR
( YP_005181236.1 )

putative two-component sensor kinase

NC_016810
(Salmonella enterica SL1344)

0.0

100

13) STMDT12_C14080
( YP_005247104.1 )

sensor kinase

NC_016860
(Salmonella enterica T000240)

0.0

100

14) STU288_03280
( YP_007901761.1 )

two component system sensor kinase SsrA

NC_021151
(Salmonella enterica U288)

0.0

100

15) ssrA
( YP_005251896.1 )

sensor kinase

NC_016863
(Salmonella enterica UK-1)

0.0

100

16) ssrA
( YP_005242293.1 )

sensor kinase

NC_016857
(Salmonella enterica ST4/74)

0.0

100

17) STMMW_13971
( YP_005232451.1 )

putative two-component sensor kinase

NC_016854
(Salmonella enterica D23580)

0.0

18) SEEH1578_16195
( YP_008247298.1 )

two component system sensor kinase SsrA

NC_021810
(Salmonella enterica 41578)

0.0

19) SU5_02009
( YP_006087643.1 )

Secretion system regulator: Sensor component

NC_017623
(Salmonella enterica B182)

0.0

20) CFSAN001992_04630
( YP_007470684.1 )

two component system sensor kinase SsrA

NC_020307
(Salmonella enterica CFSAN001992)

0.0

21) CFSAN002069_02040
( YP_008249268.1 )

transcriptional regulator

NC_021812
(Salmonella enterica CFSAN002069)

0.0

22) SeSA_A1490
( YP_002114407.1 )

secretion system regulator:Sensor component

NC_011094
(Salmonella enterica CVM19633)

0.0

23) SeHA_C1527
( YP_002045397.1 )

secretion system regulator:Sensor component

NC_011083
(Salmonella enterica SL476)

0.0

24) SNSL254_A1505
( YP_002040646.1 )

secretion system regulator:Sensor component

NC_011080
(Salmonella enterica SL254)

0.0

25) SN31241_24640
( YP_008360380.1 )

Secretion system regulator:Sensor component

NC_021902
(Salmonella enterica USMARC-S3124.1)

0.0

26) SEEB0189_12575
( YP_008308830.1 )

transcriptional regulator

NC_021844
(Salmonella enterica CFSAN000189)

0.0

27) STBHUCCB_13520
( YP_005216910.1 )

Secretion system regulator:Sensor component

NC_016832
(Salmonella enterica P-stx-12)

0.0

28) ssrA
( NP_805063.1 )

two-component sensor kinase

NC_004631
(Salmonella enterica Ty2)

0.0

29) TY21A_06410
( YP_007925586.1 )

putative two-component sensor kinase

NC_021176
(Salmonella enterica Ty21a)

0.0

30) ssrA
( NP_456136.1 )

putative two-component sensor kinase

NC_003198
(Salmonella enterica CT18)

0.0

31) SeD_A1949
( YP_002215737.1 )

secretion system regulator:Sensor component

NC_011205
(Salmonella enterica CT_02021853)

0.0

32) ssrA
( YP_002243753.1 )

two-component sensor kinase

NC_011294
(Salmonella enterica P125109)

0.0

33) ssrA
( YP_002637895.1 )

two-component sensor kinase

NC_012125
(Salmonella enterica RKS4594)

0.0

34) ssrA
( YP_216400.1 )

secretion system regulator:sensor component

NC_006905
(Salmonella enterica SC-B67)

0.0

35) ssrA
( YP_008480881.1 )

putative two-component sensor kinase

NC_022221
(Salmonella enterica CDC1983-67)

0.0

36) ssrA
( YP_005212419.1 )

putative two-component sensor kinase

NC_016831
(Salmonella enterica RKS5078)

0.0

37) I137_05565
( YP_008380623.1 )

transcriptional regulator

NC_021984
(Salmonella enterica S06004)

0.0

38) ssrA
( YP_002226693.1 )

two-component sensor kinase

NC_011274
(Salmonella enterica 287/91)

0.0

39) SARI_01589
( YP_001570625.1 )

hypothetical protein

NC_010067
(Salmonella enterica RSK2980)

0.0

40) SG1280
( YP_454960.1 )

two-component sensor kinase

NC_007712
(Sodalis glossinidius morsitans)

0.0

41) PAU_03782
( YP_003042611.1 )

two-component sensor/regulator precursor

NC_012962
(Photorhabdus asymbiotica ATCC 43949)

4e-162

42) A1122_03865
( YP_005520468.1 )

two component system sensor kinase SsrA

NC_017168
(Yersinia pestis A1122)

3e-145

43) YPA_4028
( YP_653934.1 )

two-component sensor/regulator

NC_008150
(Yersinia pestis Antiqua)

3e-145

44) YPO0256
( YP_002345336.1 )

two-component sensor/regulator

NC_003143
(Yersinia pestis CO92)

3e-145

45) YPD4_0223
( YP_005503435.1 )

two-component sensor/regulator

NC_017154
(Yersinia pestis D106004)

3e-145

46) YPD8_0228
( YP_005507311.1 )

two-component sensor/regulator

NC_017160
(Yersinia pestis D182038)

3e-145

47) YPC_0754
( YP_005622738.1 )

two-component sensor/regulator

NC_017265
(Yersinia pestis Harbin 35)

3e-145

48) YPN_3413
( YP_649340.1 )

two-component sensor/regulator

NC_008149
(Yersinia pestis Nepal516)

3e-145

49) YPDSF_3715
( YP_001165038.1 )

two-component sensor/regulator

NC_009381
(Yersinia pestis Pestoides F)

3e-145

50) YPZ3_0221
( YP_003566393.1 )

two-component sensor/regulator

NC_014029
(Yersinia pestis Z176003)

3e-145

51) baeS1
( NP_991803.1 )

two-component sensor/regulator

NC_005810
(Yersinia pestis 91001)

7e-143

52) y0513
( NP_667851.1 )

two-component sensor/regulator

NC_004088
(Yersinia pestis KIM)

7e-143

53) YPK_3918
( YP_001722636.1 )

multi-sensor hybrid histidine kinase

NC_010465
(Yersinia pseudotuberculosis YPIII)

6e-142

54) YPTB0311
( YP_068857.1 )

two-component sensor/regulator

NC_006155
(Yersinia pseudotuberculosis IP 32953)

9e-142

55) YPTS_0335
( YP_001870781.1 )

multi-sensor hybrid histidine kinase

NC_010634
(Yersinia pseudotuberculosis PB1/+)

9e-142

56) YpAngola_A3944
( YP_001608241.1 )

two-component sensor/regulator

NC_010159
(Yersinia pestis Angola)

8e-137

57) YpsIP31758_3832
( YP_001402786.1 )

sensor histidine kinase/response regulator EsrA

NC_009708
(Yersinia pseudotuberculosis IP 31758)

3e-135

58) Y11_35181
( YP_006007017.1 )

secretion system regulator: Sensor component

NC_017564
(Yersinia enterocolitica Y11)

3e-128

59) YE105_C0310
( YP_004296511.1 )

Multi-sensor hybrid histidine kinase

NC_015224
(Yersinia enterocolitica 105.5R(r))

3e-128

• Sequence Alignments

1) CFSAN002050_13355 in NC_021818


> U51927|1|G1|1498305|AAC44299.1|Salmonella_enterica_subsp._enterica_serovar_Typhimurium_LT2|-|1..2468|spiR|-|SpiR
Length=823

 Score = 1280 bits (4856),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 814/823 (99%), Positives = 822/823 (99%), Gaps = 0/823 (0%)

Query  1    MNLLNLKNTLQTslvirltflfllttiiiwllsvltAAYISMVQKRQHIIEDLSVLSEMN  60
            MNLLNLKNTLQTSLVIRLTFLFLLTTIIIWLLSVLTAAYISMVQKRQHIIEDLSVLSEMN
Sbjct  1    MNLLNLKNTLQTSLVIRLTFLFLLTTIIIWLLSVLTAAYISMVQKRQHIIEDLSVLSEMN  60

Query  61   IVLSNQQFEEAERDAKNLMYQCSLASEIHHNDIFPEVSRHLSVGPSNCTPTLNGEKHRLF  120
            IVLSNQ+FEEAERDAKNLMYQCSLA+EIHHNDIFPEVSRHLSVGPSNCTPTLNGEKHRLF
Sbjct  61   IVLSNQRFEEAERDAKNLMYQCSLATEIHHNDIFPEVSRHLSVGPSNCTPTLNGEKHRLF  120

Query  121  LQSSDIDEKSFRRDSFILNHKNEISLLSTDNPSDYSTLQPLTRKSFPLYPTHAGFYWSEP  180
            LQSSDIDE+SFRRDSFILNHKNEISLLSTDNPSDYSTLQPLTRKSFPLYPTHAGFYWSEP
Sbjct  121  LQSSDIDENSFRRDSFILNHKNEISLLSTDNPSDYSTLQPLTRKSFPLYPTHAGFYWSEP  180

Query  181  EYINGKGWHASVAVADQQGVFFGVTVKLPDLITKSHLPLDDSIRVWLDQNNHLLPFSYIP  240
            EYINGKGWHASVAVADQQGVFF VTVKLPDLITKSHLPLDDSIRVWLDQNNHLLPFSYIP
Sbjct  181  EYINGKGWHASVAVADQQGVFFEVTVKLPDLITKSHLPLDDSIRVWLDQNNHLLPFSYIP  240

Query  241  QKIRTQLENVTLHDGWQQIPGFLILRTTLHGPGWSLVTLYPYGNLHNRILKIILQQIPFT  300
            QKIRTQLENVTLHDGWQQIPGFLILRTTLHGPGWSLVTLYPYGNLHNRILKIILQQIPFT
Sbjct  241  QKIRTQLENVTLHDGWQQIPGFLILRTTLHGPGWSLVTLYPYGNLHNRILKIILQQIPFT  300

Query  301  LTALVLMTSAFCWLLHRSLAKPLWRFVDVINKAATAPLSTRLPAQRLDELDSIAGAFNQL  360
            LTALVLMTSAFCWLLHRSLAKPLWRFVDVINK+ATAPLSTRLPAQRLDELDSIAGAFNQL
Sbjct  301  LTALVLMTSAFCWLLHRSLAKPLWRFVDVINKTATAPLSTRLPAQRLDELDSIAGAFNQL  360

Query  361  LDTLQVQYDNLENKVAERTQALNEAKKRAEQANKRKSIHLTVISHELRTPMNGVLGAIEL  420
            LDTLQVQYDNLENKVAERTQALNEAKKRAE+ANKRKSIHLTVISHELRTPMNGVLGAIEL
Sbjct  361  LDTLQVQYDNLENKVAERTQALNEAKKRAERANKRKSIHLTVISHELRTPMNGVLGAIEL  420

Query  421  LQTTPLNIEQQGLADTARNCTLSLLAIINNLLDFSRIESGHFTLHMEETALLPLLDQTMQ  480
            LQTTPLNIEQQGLADTARNCTLSLLAIINNLLDFSRIESGHFTLHMEETALLPLLDQ+MQ
Sbjct  421  LQTTPLNIEQQGLADTARNCTLSLLAIINNLLDFSRIESGHFTLHMEETALLPLLDQAMQ  480

Query  481  TIQGPAQSKKLSLRTFVGQHVPLYFHTDSIRLRQILVNLLGNAVKFTETGGIRLTVKRHE  540
            TIQGPAQSKKLSLRTFVGQHVPLYFHTDSIRLRQILVNLLGNAVKFTETGGIRLTVKRHE
Sbjct  481  TIQGPAQSKKLSLRTFVGQHVPLYFHTDSIRLRQILVNLLGNAVKFTETGGIRLTVKRHE  540

Query  541  EQLIFLVSDSGKGIEIQQQSQIFTAFYQADTNSQGTGIGLTIASSLAKMMGGNLTLKSVP  600
            EQLIFLVSDSGKGIEIQQQSQIFTAFYQADTNSQGTGIGLTIASSLAKMMGGNLTLKSVP
Sbjct  541  EQLIFLVSDSGKGIEIQQQSQIFTAFYQADTNSQGTGIGLTIASSLAKMMGGNLTLKSVP  600

Query  601  GVGTCVSLVLPLQEYQPPQPIKGTLSAPFCLHRQLACWGIRGEPPHQQNALLNAELLYFP  660
            GVGTCVSLVLPLQEYQPPQPIKGTLSAPFCLHRQLACWGIRGEPPHQQNALLNAELLYF+
Sbjct  601  GVGTCVSLVLPLQEYQPPQPIKGTLSAPFCLHRQLACWGIRGEPPHQQNALLNAELLYFS  660

Query  661  GKLYDLAQQLILCTPNMPVINNLLPPWQLQILLVDDADINRDIIGKMLVSLGQHVTIAAS  720
            GKLYDLAQQLILCTPNMPVINNLLPPWQLQILLVDDADINRDIIGKMLVSLGQHVTIAAS
Sbjct  661  GKLYDLAQQLILCTPNMPVINNLLPPWQLQILLVDDADINRDIIGKMLVSLGQHVTIAAS  720

Query  721  SNEALTLSQQQRFDLVLIDIRMPEIDGIECVQLWHDEPNNLDPDCMFVALSASVATEDIH  780
            SNEALTLSQQQRFDLVLIDIRMPEIDGIECV+LWHDEPNNLDPDCMFVALSASVATEDIH
Sbjct  721  SNEALTLSQQQRFDLVLIDIRMPEIDGIECVRLWHDEPNNLDPDCMFVALSASVATEDIH  780

Query  781  RCKKNGIHHYITKPVTLATLARYISIAAEYQLLRNIELQEQDP  823
            RCKKNGIHHYITKPVTLATLARYISIAAEYQLLRNIELQEQDP
Sbjct  781  RCKKNGIHHYITKPVTLATLARYISIAAEYQLLRNIELQEQDP  823

2) SPAB_01934 in NC_010102


> U51927|1|G1|1498305|AAC44299.1|Salmonella_enterica_subsp._enterica_serovar_Typhimurium_LT2|-|1..2468|spiR|-|SpiR
Length=823

 Score = 1280 bits (4858),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 816/823 (99%), Positives = 820/823 (99%), Gaps = 0/823 (0%)

Query  1    MNLLNLKNTLQTslvirltflfllttiiiwllsvltAAYISMVQKRQHIIEDLSVLSEMN  60
            MNLLNLKNTLQTSLVIRLTFLFLLTTIIIWLLSVLTAAYISMVQKRQHIIEDLSVLSEMN
Sbjct  1    MNLLNLKNTLQTSLVIRLTFLFLLTTIIIWLLSVLTAAYISMVQKRQHIIEDLSVLSEMN  60

Query  61   IVLSNQRFEEAERDAKNLMYQCSLATEIHHNDIFPEVSRHLSVGPSNCTPTLNGEKHRLF  120
            IVLSNQRFEEAERDAKNLMYQCSLATEIHHNDIFPEVSRHLSVGPSNCTPTLNGEKHRLF
Sbjct  61   IVLSNQRFEEAERDAKNLMYQCSLATEIHHNDIFPEVSRHLSVGPSNCTPTLNGEKHRLF  120

Query  121  LQSSDIDENSFRRDSFILNHKNEISLLSTDNPSDYSTLQPLTRKSFPLYPTHAGFYWSEP  180
            LQSSDIDENSFRRDSFILNHKNEISLLSTDNPSDYSTLQPLTRKSFPLYPTHAGFYWSEP
Sbjct  121  LQSSDIDENSFRRDSFILNHKNEISLLSTDNPSDYSTLQPLTRKSFPLYPTHAGFYWSEP  180

Query  181  EYINGKGWHASVAVADQQGVFFGVTVKLPDLITKSHLPLDDSIRVWLDQNNHLLPFSYIP  240
            EYINGKGWHASVAVADQQGVFF VTVKLPDLITKSHLPLDDSIRVWLDQNNHLLPFSYIP
Sbjct  181  EYINGKGWHASVAVADQQGVFFEVTVKLPDLITKSHLPLDDSIRVWLDQNNHLLPFSYIP  240

Query  241  QKIRTQLENVTLHDGWQQIPGFLILRTTLHGPGWSLVTLYPYGNLHNRILKIILQQIPFT  300
            QKIRTQLENVTLHDGWQQIPGFLILRTTLHGPGWSLVTLYPYGNLHNRILKIILQQIPFT
Sbjct  241  QKIRTQLENVTLHDGWQQIPGFLILRTTLHGPGWSLVTLYPYGNLHNRILKIILQQIPFT  300

Query  301  LTALVLMTSAFCWLLHRSLAKPLWRFVDVINKTATAPLSTRLPEQRLDELDSIAGAFNQL  360
            LTALVLMTSAFCWLLHRSLAKPLWRFVDVINKTATAPLSTRLP QRLDELDSIAGAFNQL
Sbjct  301  LTALVLMTSAFCWLLHRSLAKPLWRFVDVINKTATAPLSTRLPAQRLDELDSIAGAFNQL  360

Query  361  LDTLQVQYDNLENKVAERTQALNEAKKRAEQANKRKSIHLTVISHELRTPMNGVLGAIEL  420
            LDTLQVQYDNLENKVAERTQALNEAKKRAE+ANKRKSIHLTVISHELRTPMNGVLGAIEL
Sbjct  361  LDTLQVQYDNLENKVAERTQALNEAKKRAERANKRKSIHLTVISHELRTPMNGVLGAIEL  420

Query  421  LQTTPLNIEQQGLADTARNCTLSLLAIINNLLDFSRIESGHFTLHMEETALLPLLDQAMQ  480
            LQTTPLNIEQQGLADTARNCTLSLLAIINNLLDFSRIESGHFTLHMEETALLPLLDQAMQ
Sbjct  421  LQTTPLNIEQQGLADTARNCTLSLLAIINNLLDFSRIESGHFTLHMEETALLPLLDQAMQ  480

Query  481  TIQGPAQSKKLSLRTFVGQHVPLYFHTDSIRLRQILVNLLGNAVKFTETGGIRLTVKRHE  540
            TIQGPAQSKKLSLRTFVGQHVPLYFHTDSIRLRQILVNLLGNAVKFTETGGIRLTVKRHE
Sbjct  481  TIQGPAQSKKLSLRTFVGQHVPLYFHTDSIRLRQILVNLLGNAVKFTETGGIRLTVKRHE  540

Query  541  EQLIFLVSDSGKGIEIQQQSQIFTAFYQADTNSQGTGIGLTIASSLAKMMGGNLTLKSVP  600
            EQLIFLVSDSGKGIEIQQQSQIFTAFYQADTNSQGTGIGLTIASSLAKMMGGNLTLKSVP
Sbjct  541  EQLIFLVSDSGKGIEIQQQSQIFTAFYQADTNSQGTGIGLTIASSLAKMMGGNLTLKSVP  600

Query  601  GVGTCVSLVLPLQEYQPPQPIKGTLSAPFCLHRQLACWGIRGAPPHQQNALLNAELLYFP  660
            GVGTCVSLVLPLQEYQPPQPIKGTLSAPFCLHRQLACWGIRG PPHQQNALLNAELLYF+
Sbjct  601  GVGTCVSLVLPLQEYQPPQPIKGTLSAPFCLHRQLACWGIRGEPPHQQNALLNAELLYFS  660

Query  661  GKLYDLAQQLILCTPNMPVINNLLPPWQLQILLVDDADINRDIIGKMLVSLGQHVTIAAS  720
            GKLYDLAQQLILCTPNMPVINNLLPPWQLQILLVDDADINRDIIGKMLVSLGQHVTIAAS
Sbjct  661  GKLYDLAQQLILCTPNMPVINNLLPPWQLQILLVDDADINRDIIGKMLVSLGQHVTIAAS  720

Query  721  SNEALTLSQQQRFDLVLIDIRMPEIDGIECVQLWHDEPNNLDPDCMFVALSASVAAEDIH  780
            SNEALTLSQQQRFDLVLIDIRMPEIDGIECV+LWHDEPNNLDPDCMFVALSASVA+EDIH
Sbjct  721  SNEALTLSQQQRFDLVLIDIRMPEIDGIECVRLWHDEPNNLDPDCMFVALSASVATEDIH  780

Query  781  RCKKNGIHHYITKPVTLATLARYISIAAEYQLLRNIELQEQDP  823
            RCKKNGIHHYITKPVTLATLARYISIAAEYQLLRNIELQEQDP
Sbjct  781  RCKKNGIHHYITKPVTLATLARYISIAAEYQLLRNIELQEQDP  823

3) SeAg_B1779 in NC_011149


> U51927|1|G1|1498305|AAC44299.1|Salmonella_enterica_subsp._enterica_serovar_Typhimurium_LT2|-|1..2468|spiR|-|SpiR
Length=823

 Score = 1279 bits (4854),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 817/823 (99%), Positives = 821/823 (99%), Gaps = 0/823 (0%)

Query  1    MNLLNLKNTLQTslvirltflfllttiiiwllsvltAAYISMVQKRQHIIEDLSVLSEMN  60
            MNLLNLKNTLQTSLVIRLTFLFLLTTIIIWLLSVLTAAYISMVQKRQHIIEDLSVLSEMN
Sbjct  1    MNLLNLKNTLQTSLVIRLTFLFLLTTIIIWLLSVLTAAYISMVQKRQHIIEDLSVLSEMN  60

Query  61   IVLSNQRFEEAERDAKNLMYQCSLATEIHHNDIFPEVSRHLSVGPSNCTPTLNGEKHRLF  120
            IVLSNQRFEEAERDAKNLMYQCSLATEIHHNDIFPEVSRHLSVGPSNCTPTLNGEKHRLF
Sbjct  61   IVLSNQRFEEAERDAKNLMYQCSLATEIHHNDIFPEVSRHLSVGPSNCTPTLNGEKHRLF  120

Query  121  LQSSDIDEKSFRRDSFILNHKNEISLLSTDNPSDYSTLQPLTRKSFPLYPTHAGFYWSEP  180
            LQSSDIDE+SFRRDSFILNHKNEISLLSTDNPSDYSTLQPLTRKSFPLYPTHAGFYWSEP
Sbjct  121  LQSSDIDENSFRRDSFILNHKNEISLLSTDNPSDYSTLQPLTRKSFPLYPTHAGFYWSEP  180

Query  181  EYINGKGWHASVAVADQQGVFFGVTVKLPDLITKSYLPLDDSIRVWLDQNNHLLPFSYIP  240
            EYINGKGWHASVAVADQQGVFF VTVKLPDLITKS LPLDDSIRVWLDQNNHLLPFSYIP
Sbjct  181  EYINGKGWHASVAVADQQGVFFEVTVKLPDLITKSHLPLDDSIRVWLDQNNHLLPFSYIP  240

Query  241  QKIRTQLENVTLHDGWQQIPGFLILRTTLHGPGWSLVTLYPYGNLHNRILKIILQQIPFT  300
            QKIRTQLENVTLHDGWQQIPGFLILRTTLHGPGWSLVTLYPYGNLHNRILKIILQQIPFT
Sbjct  241  QKIRTQLENVTLHDGWQQIPGFLILRTTLHGPGWSLVTLYPYGNLHNRILKIILQQIPFT  300

Query  301  LTALVLMTSAFCWLLHRSLAKPLWRFVDVINKTATAPLSTRLPAQRLDELDSIAGAFNQL  360
            LTALVLMTSAFCWLLHRSLAKPLWRFVDVINKTATAPLSTRLPAQRLDELDSIAGAFNQL
Sbjct  301  LTALVLMTSAFCWLLHRSLAKPLWRFVDVINKTATAPLSTRLPAQRLDELDSIAGAFNQL  360

Query  361  LDTLQVQYDNLENKVAERTQALNEAKKRAEQANKRKSIHLTVISHELRTPMNGVLGAIEL  420
            LDTLQVQYDNLENKVAERTQALNEAKKRAE+ANKRKSIHLTVISHELRTPMNGVLGAIEL
Sbjct  361  LDTLQVQYDNLENKVAERTQALNEAKKRAERANKRKSIHLTVISHELRTPMNGVLGAIEL  420

Query  421  LQTTPLNIEQQGLADTARNCTLSLLAIINNLLDFSRIESGHFTLHMEETALLPLLDQAMQ  480
            LQTTPLNIEQQGLADTARNCTLSLLAIINNLLDFSRIESGHFTLHMEETALLPLLDQAMQ
Sbjct  421  LQTTPLNIEQQGLADTARNCTLSLLAIINNLLDFSRIESGHFTLHMEETALLPLLDQAMQ  480

Query  481  TIQGPAQSKKLSLRTFVGQHVPLYFHTDSIRLRQILVNLLGNAVKFTETGGIRLTVKRHE  540
            TIQGPAQSKKLSLRTFVGQHVPLYFHTDSIRLRQILVNLLGNAVKFTETGGIRLTVKRHE
Sbjct  481  TIQGPAQSKKLSLRTFVGQHVPLYFHTDSIRLRQILVNLLGNAVKFTETGGIRLTVKRHE  540

Query  541  EQLIFLVSDSGKGIEIQQQSQIFTAFYQADTNSQGTGIGLTIASSLAKMMGGNLTLKSVP  600
            EQLIFLVSDSGKGIEIQQQSQIFTAFYQADTNSQGTGIGLTIASSLAKMMGGNLTLKSVP
Sbjct  541  EQLIFLVSDSGKGIEIQQQSQIFTAFYQADTNSQGTGIGLTIASSLAKMMGGNLTLKSVP  600

Query  601  GVGTCVSLVLPLQEYQPPQPIKGTLSAPFCLHRQLACWGIRGEPPHQQNALLNAELLYFP  660
            GVGTCVSLVLPLQEYQPPQPIKGTLSAPFCLHRQLACWGIRGEPPHQQNALLNAELLYF+
Sbjct  601  GVGTCVSLVLPLQEYQPPQPIKGTLSAPFCLHRQLACWGIRGEPPHQQNALLNAELLYFS  660

Query  661  GKLYDLAQQLILCTPNMPVINNLLPPWQLQILLVDDADINRDIIGKMLVSLGQHVTIAAS  720
            GKLYDLAQQLILCTPNMPVINNLLPPWQLQILLVDDADINRDIIGKMLVSLGQHVTIAAS
Sbjct  661  GKLYDLAQQLILCTPNMPVINNLLPPWQLQILLVDDADINRDIIGKMLVSLGQHVTIAAS  720

Query  721  SNEALTLSQQQRFDLVLIDIRMPEIDGIECVQLWHDEPNNLDPDCMFVALSASVATEDIH  780
            SNEALTLSQQQRFDLVLIDIRMPEIDGIECV+LWHDEPNNLDPDCMFVALSASVATEDIH
Sbjct  721  SNEALTLSQQQRFDLVLIDIRMPEIDGIECVRLWHDEPNNLDPDCMFVALSASVATEDIH  780

Query  781  RCKKNGIHHYITKPVTLATLARYISIAAEYQLLRNIELQEQDP  823
            RCKKNGIHHYITKPVTLATLARYISIAAEYQLLRNIELQEQDP
Sbjct  781  RCKKNGIHHYITKPVTLATLARYISIAAEYQLLRNIELQEQDP  823

4) SSPA1359 in NC_011147


> U51927|1|G1|1498305|AAC44299.1|Salmonella_enterica_subsp._enterica_serovar_Typhimurium_LT2|-|1..2468|spiR|-|SpiR
Length=823

 Score = 1278 bits (4847),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 814/823 (99%), Positives = 821/823 (99%), Gaps = 0/823 (0%)

Query  1    MNLLNLKNTLQTslvirltflfllttiiiwllsvltAAYISMVQKRQHIIEDLSVLSEMN  60
            MNLLNLKNTLQTSLVIRLTFLFLLTTIIIWLLSVLTAAYISMVQKRQHIIEDLSVLSEMN
Sbjct  1    MNLLNLKNTLQTSLVIRLTFLFLLTTIIIWLLSVLTAAYISMVQKRQHIIEDLSVLSEMN  60

Query  61   IVLSNQRFEETERDAKNLMYQCSLATEIHHNDIFPEVSRHLSVGPSNCTPTLNGEKHRLF  120
            IVLSNQRFEE+ERDAKNLMYQCSLATEIHHNDIFPEVSRHLSVGPSNCTPTLNGEKHRLF
Sbjct  61   IVLSNQRFEEAERDAKNLMYQCSLATEIHHNDIFPEVSRHLSVGPSNCTPTLNGEKHRLF  120

Query  121  LQSSDIDEKSFRRDSFILNHKNEISLLSTDNPSDYSTLQPLTRKSFPLYPTHAGFYWSEP  180
            LQSSDIDE+SFRRDSFILNHKNEISLLSTDNPSDYSTLQPLTRKSFPLYPTHAGFYWSEP
Sbjct  121  LQSSDIDENSFRRDSFILNHKNEISLLSTDNPSDYSTLQPLTRKSFPLYPTHAGFYWSEP  180

Query  181  EYINGKGWHASVAVADQQGVFFGVTVKLPDLITKSHLPLDDSIRVWLDQNNHLLPFSYIP  240
            EYINGKGWHASVAVADQQGVFF VTVKLPDLITKSHLPLDDSIRVWLDQNNHLLPFSYIP
Sbjct  181  EYINGKGWHASVAVADQQGVFFEVTVKLPDLITKSHLPLDDSIRVWLDQNNHLLPFSYIP  240

Query  241  QKIRTQLENVTLHDGWQQIPGFLILRTTLHGPGWSLVTLYPYGNLHNRILKIILQQIPFT  300
            QKIRTQLENVTLHDGWQQIPGFLILRTTLHGPGWSLVTLYPYGNLHNRILKIILQQIPFT
Sbjct  241  QKIRTQLENVTLHDGWQQIPGFLILRTTLHGPGWSLVTLYPYGNLHNRILKIILQQIPFT  300

Query  301  LTALVLMTSAFCWLLHRSLAKPLWRFVDVINKTATAPLSTRLPAQRLDELDSIAGAFNQL  360
            LTALVLMTSAFCWLLHRSLAKPLWRFVDVINKTATAPLSTRLPAQRLDELDSIAGAFNQL
Sbjct  301  LTALVLMTSAFCWLLHRSLAKPLWRFVDVINKTATAPLSTRLPAQRLDELDSIAGAFNQL  360

Query  361  LDTLQVQYDNLENKVAERTQALNEAKKRAEQANKRKSIHLTVISHELRTPMNGVLGAIEL  420
            LDTLQVQYDNLENKVAERTQALNEAKKRAE+ANKRKSIHLTVISHELRTPMNGVLGAIEL
Sbjct  361  LDTLQVQYDNLENKVAERTQALNEAKKRAERANKRKSIHLTVISHELRTPMNGVLGAIEL  420

Query  421  LQTTPLNIEQQGLADTARNCTLSLLAIINNLLDFSRIESGHFTLRMEETALLPLLDQAMQ  480
            LQTTPLNIEQQGLADTARNCTLSLLAIINNLLDFSRIESGHFTL+MEETALLPLLDQAMQ
Sbjct  421  LQTTPLNIEQQGLADTARNCTLSLLAIINNLLDFSRIESGHFTLHMEETALLPLLDQAMQ  480

Query  481  TIQGPAQSKKLSLRTFVGQHVPLYFHTDSIRLRQILVNLLGNAVKFTETGGIRLTVKRHE  540
            TIQGPAQSKKLSLRTFVGQHVPLYFHTDSIRLRQILVNLLGNAVKFTETGGIRLTVKRHE
Sbjct  481  TIQGPAQSKKLSLRTFVGQHVPLYFHTDSIRLRQILVNLLGNAVKFTETGGIRLTVKRHE  540

Query  541  EQLIFLVSDSGKGIEIQQQSQIFTAFYQADTNSQGTGIGLTIASSLAKMMGGNLALKSVP  600
            EQLIFLVSDSGKGIEIQQQSQIFTAFYQADTNSQGTGIGLTIASSLAKMMGGNL+LKSVP
Sbjct  541  EQLIFLVSDSGKGIEIQQQSQIFTAFYQADTNSQGTGIGLTIASSLAKMMGGNLTLKSVP  600

Query  601  GVGTCVSLVLPLQEYQPPQPIKGTLSAPFCLHRQLACWGIRGEPPHQQNALLNAELLYFP  660
            GVGTCVSLVLPLQEYQPPQPIKGTLSAPFCLHRQLACWGIRGEPPHQQNALLNAELLYF+
Sbjct  601  GVGTCVSLVLPLQEYQPPQPIKGTLSAPFCLHRQLACWGIRGEPPHQQNALLNAELLYFS  660

Query  661  GKLYDLAQQLILCTPNMPVINNLLPPWQLQILLVDDADINRDIIGKMLVSQGQHVTIAAS  720
            GKLYDLAQQLILCTPNMPVINNLLPPWQLQILLVDDADINRDIIGKMLVS GQHVTIAAS
Sbjct  661  GKLYDLAQQLILCTPNMPVINNLLPPWQLQILLVDDADINRDIIGKMLVSLGQHVTIAAS  720

Query  721  SNEALTLSQQQRFDLVLIDIRMPEIDGIECVQLWHDEPNNLDPDCMFVALSASVATEDIH  780
            SNEALTLSQQQRFDLVLIDIRMPEIDGIECV+LWHDEPNNLDPDCMFVALSASVATEDIH
Sbjct  721  SNEALTLSQQQRFDLVLIDIRMPEIDGIECVRLWHDEPNNLDPDCMFVALSASVATEDIH  780

Query  781  RCKKNGIHHYITKPVTLATLARYISIAAEYQLLRNIELQEQDP  823
            RCKKNGIHHYITKPVTLATLARYISIAAEYQLLRNIELQEQDP
Sbjct  781  RCKKNGIHHYITKPVTLATLARYISIAAEYQLLRNIELQEQDP  823

5) ssrA in NC_006511


> U51927|1|G1|1498305|AAC44299.1|Salmonella_enterica_subsp._enterica_serovar_Typhimurium_LT2|-|1..2468|spiR|-|SpiR
Length=823

 Score = 1278 bits (4847),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 814/823 (99%), Positives = 821/823 (99%), Gaps = 0/823 (0%)

Query  1    MNLLNLKNTLQTslvirltflfllttiiiwllsvltAAYISMVQKRQHIIEDLSVLSEMN  60
            MNLLNLKNTLQTSLVIRLTFLFLLTTIIIWLLSVLTAAYISMVQKRQHIIEDLSVLSEMN
Sbjct  1    MNLLNLKNTLQTSLVIRLTFLFLLTTIIIWLLSVLTAAYISMVQKRQHIIEDLSVLSEMN  60

Query  61   IVLSNQRFEETERDAKNLMYQCSLATEIHHNDIFPEVSRHLSVGPSNCTPTLNGEKHRLF  120
            IVLSNQRFEE+ERDAKNLMYQCSLATEIHHNDIFPEVSRHLSVGPSNCTPTLNGEKHRLF
Sbjct  61   IVLSNQRFEEAERDAKNLMYQCSLATEIHHNDIFPEVSRHLSVGPSNCTPTLNGEKHRLF  120

Query  121  LQSSDIDEKSFRRDSFILNHKNEISLLSTDNPSDYSTLQPLTRKSFPLYPTHAGFYWSEP  180
            LQSSDIDE+SFRRDSFILNHKNEISLLSTDNPSDYSTLQPLTRKSFPLYPTHAGFYWSEP
Sbjct  121  LQSSDIDENSFRRDSFILNHKNEISLLSTDNPSDYSTLQPLTRKSFPLYPTHAGFYWSEP  180

Query  181  EYINGKGWHASVAVADQQGVFFGVTVKLPDLITKSHLPLDDSIRVWLDQNNHLLPFSYIP  240
            EYINGKGWHASVAVADQQGVFF VTVKLPDLITKSHLPLDDSIRVWLDQNNHLLPFSYIP
Sbjct  181  EYINGKGWHASVAVADQQGVFFEVTVKLPDLITKSHLPLDDSIRVWLDQNNHLLPFSYIP  240

Query  241  QKIRTQLENVTLHDGWQQIPGFLILRTTLHGPGWSLVTLYPYGNLHNRILKIILQQIPFT  300
            QKIRTQLENVTLHDGWQQIPGFLILRTTLHGPGWSLVTLYPYGNLHNRILKIILQQIPFT
Sbjct  241  QKIRTQLENVTLHDGWQQIPGFLILRTTLHGPGWSLVTLYPYGNLHNRILKIILQQIPFT  300

Query  301  LTALVLMTSAFCWLLHRSLAKPLWRFVDVINKTATAPLSTRLPAQRLDELDSIAGAFNQL  360
            LTALVLMTSAFCWLLHRSLAKPLWRFVDVINKTATAPLSTRLPAQRLDELDSIAGAFNQL
Sbjct  301  LTALVLMTSAFCWLLHRSLAKPLWRFVDVINKTATAPLSTRLPAQRLDELDSIAGAFNQL  360

Query  361  LDTLQVQYDNLENKVAERTQALNEAKKRAEQANKRKSIHLTVISHELRTPMNGVLGAIEL  420
            LDTLQVQYDNLENKVAERTQALNEAKKRAE+ANKRKSIHLTVISHELRTPMNGVLGAIEL
Sbjct  361  LDTLQVQYDNLENKVAERTQALNEAKKRAERANKRKSIHLTVISHELRTPMNGVLGAIEL  420

Query  421  LQTTPLNIEQQGLADTARNCTLSLLAIINNLLDFSRIESGHFTLRMEETALLPLLDQAMQ  480
            LQTTPLNIEQQGLADTARNCTLSLLAIINNLLDFSRIESGHFTL+MEETALLPLLDQAMQ
Sbjct  421  LQTTPLNIEQQGLADTARNCTLSLLAIINNLLDFSRIESGHFTLHMEETALLPLLDQAMQ  480

Query  481  TIQGPAQSKKLSLRTFVGQHVPLYFHTDSIRLRQILVNLLGNAVKFTETGGIRLTVKRHE  540
            TIQGPAQSKKLSLRTFVGQHVPLYFHTDSIRLRQILVNLLGNAVKFTETGGIRLTVKRHE
Sbjct  481  TIQGPAQSKKLSLRTFVGQHVPLYFHTDSIRLRQILVNLLGNAVKFTETGGIRLTVKRHE  540

Query  541  EQLIFLVSDSGKGIEIQQQSQIFTAFYQADTNSQGTGIGLTIASSLAKMMGGNLALKSVP  600
            EQLIFLVSDSGKGIEIQQQSQIFTAFYQADTNSQGTGIGLTIASSLAKMMGGNL+LKSVP
Sbjct  541  EQLIFLVSDSGKGIEIQQQSQIFTAFYQADTNSQGTGIGLTIASSLAKMMGGNLTLKSVP  600

Query  601  GVGTCVSLVLPLQEYQPPQPIKGTLSAPFCLHRQLACWGIRGEPPHQQNALLNAELLYFP  660
            GVGTCVSLVLPLQEYQPPQPIKGTLSAPFCLHRQLACWGIRGEPPHQQNALLNAELLYF+
Sbjct  601  GVGTCVSLVLPLQEYQPPQPIKGTLSAPFCLHRQLACWGIRGEPPHQQNALLNAELLYFS  660

Query  661  GKLYDLAQQLILCTPNMPVINNLLPPWQLQILLVDDADINRDIIGKMLVSQGQHVTIAAS  720
            GKLYDLAQQLILCTPNMPVINNLLPPWQLQILLVDDADINRDIIGKMLVS GQHVTIAAS
Sbjct  661  GKLYDLAQQLILCTPNMPVINNLLPPWQLQILLVDDADINRDIIGKMLVSLGQHVTIAAS  720

Query  721  SNEALTLSQQQRFDLVLIDIRMPEIDGIECVQLWHDEPNNLDPDCMFVALSASVATEDIH  780
            SNEALTLSQQQRFDLVLIDIRMPEIDGIECV+LWHDEPNNLDPDCMFVALSASVATEDIH
Sbjct  721  SNEALTLSQQQRFDLVLIDIRMPEIDGIECVRLWHDEPNNLDPDCMFVALSASVATEDIH  780

Query  781  RCKKNGIHHYITKPVTLATLARYISIAAEYQLLRNIELQEQDP  823
            RCKKNGIHHYITKPVTLATLARYISIAAEYQLLRNIELQEQDP
Sbjct  781  RCKKNGIHHYITKPVTLATLARYISIAAEYQLLRNIELQEQDP  823

6) SBOV13911 in NC_022241


> U51927|1|G1|1498305|AAC44299.1|Salmonella_enterica_subsp._enterica_serovar_Typhimurium_LT2|-|1..2468|spiR|-|SpiR
Length=823

 Score = 1276 bits (4842),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 813/823 (99%), Positives = 819/823 (99%), Gaps = 0/823 (0%)

Query  1    MNLLNLKNTLQTslvirltflfllttiiiwllsvltAAYISMVQKRQHIIEDLSVLSEMN  60
            MNLLNLKNTLQTSLVIRLTFLFLLTTIIIWLLSVLTAAYISMVQKRQHIIEDLSVLSEMN
Sbjct  1    MNLLNLKNTLQTSLVIRLTFLFLLTTIIIWLLSVLTAAYISMVQKRQHIIEDLSVLSEMN  60

Query  61   IVLSNQRFEEAERDAKNLMYQCSLATEIHHNDIFPEVSRHLSVGPSNCTPTLNGEKHRLF  120
            IVLSNQRFEEAERDAKNLMYQCSLATEIHHNDIFPEVSRHLSVGPSNCTPTLNGEKHRLF
Sbjct  61   IVLSNQRFEEAERDAKNLMYQCSLATEIHHNDIFPEVSRHLSVGPSNCTPTLNGEKHRLF  120

Query  121  LQSSDIDENSFRRDSFILNHKNEISLLSTDNPSDYSTLQPLTRKSFPLYPTHAGFYWSEP  180
            LQSSDIDENSFRRDSFILNHKNEISLLSTDNPSDYSTLQPLTRKSFPLYPTHAGFYWSEP
Sbjct  121  LQSSDIDENSFRRDSFILNHKNEISLLSTDNPSDYSTLQPLTRKSFPLYPTHAGFYWSEP  180

Query  181  EYINGKGWHASVAVADQQGVFFGVTVKLPDLITKSHLPLDDSIRVWLDQNNHLLPFSYIP  240
            EYINGKGWHASVAVADQQGVFF VTVKLPDLITKSHLPLDDSIRVWLDQNNHLLPFSYIP
Sbjct  181  EYINGKGWHASVAVADQQGVFFEVTVKLPDLITKSHLPLDDSIRVWLDQNNHLLPFSYIP  240

Query  241  QKIRTQLENVTLHDGWQQIPGFLILRTTLHGPGWSLVTLYPYGNLHNRILKIILQQIPFT  300
            QKIRTQLENVTLHDGWQQIPGFLILRTTLHGPGWSLVTLYPYGNLHNRILKIILQQIPFT
Sbjct  241  QKIRTQLENVTLHDGWQQIPGFLILRTTLHGPGWSLVTLYPYGNLHNRILKIILQQIPFT  300

Query  301  LTALVLMTSAFCWLLHRSLAKPLWRFVDVINKTATAPLSTRLPEQRLDELDSIAGAFNQL  360
            LTALVLMTSAFCWLLHRSLAKPLWRFVDVINKTATAPLSTRLP QRLDELDSIAGAFNQL
Sbjct  301  LTALVLMTSAFCWLLHRSLAKPLWRFVDVINKTATAPLSTRLPAQRLDELDSIAGAFNQL  360

Query  361  LDTLQVQYDNLENKVADRTQALNEAKKRAEQANKRKSIHLTVISHELRTPMNGVLGAIEL  420
            LDTLQVQYDNLENKVA+RTQALNEAKKRAE+ANKRKSIHLTVISHELRTPMNGVLGAIEL
Sbjct  361  LDTLQVQYDNLENKVAERTQALNEAKKRAERANKRKSIHLTVISHELRTPMNGVLGAIEL  420

Query  421  LQTTPLNIEQQGLADTARNCTLSLLAIINNLLDFSRIESGHFTLHMEETALLPLLDQAMQ  480
            LQTTPLNIEQQGLADTARNCTLSLLAIINNLLDFSRIESGHFTLHMEETALLPLLDQAMQ
Sbjct  421  LQTTPLNIEQQGLADTARNCTLSLLAIINNLLDFSRIESGHFTLHMEETALLPLLDQAMQ  480

Query  481  TIQGPAQSKKLSLRTFVGQHVPLYFHTDSIRLRQILVNLLGNAVKFTETGGIRLTVKRHE  540
            TIQGPAQSKKLSLRTFVGQHVPLYFHTDSIRLRQILVNLLGNAVKFTETGGIRLTVKRHE
Sbjct  481  TIQGPAQSKKLSLRTFVGQHVPLYFHTDSIRLRQILVNLLGNAVKFTETGGIRLTVKRHE  540

Query  541  EQLIFLVSDSGKGIEIQQQSQIFTAFYQADTNSQGTGIGLTIASSLAKMMGGNLTLKSVP  600
            EQLIFLVSDSGKGIEIQQQSQIFTAFYQADTNSQGTGIGLTIASSLAKMMGGNLTLKSVP
Sbjct  541  EQLIFLVSDSGKGIEIQQQSQIFTAFYQADTNSQGTGIGLTIASSLAKMMGGNLTLKSVP  600

Query  601  GIGTCVSLVLPLQEYQPPQPIKGTLSAPFCLHRQLACWGIRGAPPHQQNALLNAELLYFP  660
            G+GTCVSLVLPLQEYQPPQPIKGTLSAPFCLHRQLACWGIRG PPHQQNALLNAELLYF+
Sbjct  601  GVGTCVSLVLPLQEYQPPQPIKGTLSAPFCLHRQLACWGIRGEPPHQQNALLNAELLYFS  660

Query  661  GKLYDLAQQLILRTPNMPVINNLLPPWQLQILLVDDADINRDIIGKMLVSLGQHVTIAAS  720
            GKLYDLAQQLIL TPNMPVINNLLPPWQLQILLVDDADINRDIIGKMLVSLGQHVTIAAS
Sbjct  661  GKLYDLAQQLILCTPNMPVINNLLPPWQLQILLVDDADINRDIIGKMLVSLGQHVTIAAS  720

Query  721  SNEALTLSQQQRFDLVLIDIRMPEIDGIECVQLWHDEPNNLDPDCMFVALSASVAAEDIH  780
            SNEALTLSQQQRFDLVLIDIRMPEIDGIECV+LWHDEPNNLDPDCMFVALSASVA+EDIH
Sbjct  721  SNEALTLSQQQRFDLVLIDIRMPEIDGIECVRLWHDEPNNLDPDCMFVALSASVATEDIH  780

Query  781  RCKKNGIHHYITKPVTLATLARYISIAAEYQLLRNIELQEQDP  823
            RCKKNGIHHYITKPVTLATLARYISIAAEYQLLRNIELQEQDP
Sbjct  781  RCKKNGIHHYITKPVTLATLARYISIAAEYQLLRNIELQEQDP  823

7) SE451236_12825 in NC_021820


> U51927|1|G1|1498305|AAC44299.1|Salmonella_enterica_subsp._enterica_serovar_Typhimurium_LT2|-|1..2468|spiR|-|SpiR
Length=823

 Score = 1262 bits (4787),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 823/823 (100%), Positives = 823/823 (100%), Gaps = 0/823 (0%)

Query  1    MNLLNLKNTLQTslvirltflfllttiiiwllsvltAAYISMVQKRQHIIEDLSVLSEMN  60
            MNLLNLKNTLQTSLVIRLTFLFLLTTIIIWLLSVLTAAYISMVQKRQHIIEDLSVLSEMN
Sbjct  1    MNLLNLKNTLQTSLVIRLTFLFLLTTIIIWLLSVLTAAYISMVQKRQHIIEDLSVLSEMN  60

Query  61   IVLSNQRFEEAERDAKNLMYQCSLATEIHHNDIFPEVSRHLSVGPSNCTPTLNGEKHRLF  120
            IVLSNQRFEEAERDAKNLMYQCSLATEIHHNDIFPEVSRHLSVGPSNCTPTLNGEKHRLF
Sbjct  61   IVLSNQRFEEAERDAKNLMYQCSLATEIHHNDIFPEVSRHLSVGPSNCTPTLNGEKHRLF  120

Query  121  LQSSDIDENSFRRDSFILNHKNEISLLSTDNPSDYSTLQPLTRKSFPLYPTHAGFYWSEP  180
            LQSSDIDENSFRRDSFILNHKNEISLLSTDNPSDYSTLQPLTRKSFPLYPTHAGFYWSEP
Sbjct  121  LQSSDIDENSFRRDSFILNHKNEISLLSTDNPSDYSTLQPLTRKSFPLYPTHAGFYWSEP  180

Query  181  EYINGKGWHASVAVADQQGVFFEVTVKLPDLITKSHLPLDDSIRVWLDQNNHLLPFSYIP  240
            EYINGKGWHASVAVADQQGVFFEVTVKLPDLITKSHLPLDDSIRVWLDQNNHLLPFSYIP
Sbjct  181  EYINGKGWHASVAVADQQGVFFEVTVKLPDLITKSHLPLDDSIRVWLDQNNHLLPFSYIP  240

Query  241  QKIRTQLENVTLHDGWQQIPGFLILRTTLHGPGWSLVTLYPYGNLHNRILKIILQQIPFT  300
            QKIRTQLENVTLHDGWQQIPGFLILRTTLHGPGWSLVTLYPYGNLHNRILKIILQQIPFT
Sbjct  241  QKIRTQLENVTLHDGWQQIPGFLILRTTLHGPGWSLVTLYPYGNLHNRILKIILQQIPFT  300

Query  301  LTALVLMTSAFCWLLHRSLAKPLWRFVDVINKTATAPLSTRLPAQRLDELDSIAGAFNQL  360
            LTALVLMTSAFCWLLHRSLAKPLWRFVDVINKTATAPLSTRLPAQRLDELDSIAGAFNQL
Sbjct  301  LTALVLMTSAFCWLLHRSLAKPLWRFVDVINKTATAPLSTRLPAQRLDELDSIAGAFNQL  360

Query  361  LDTLQVQYDNLENKVAERTQALneakkraerankrkSIHLTVISHELRTPMNGVLGAIEL  420
            LDTLQVQYDNLENKVAERTQALNEAKKRAERANKRKSIHLTVISHELRTPMNGVLGAIEL
Sbjct  361  LDTLQVQYDNLENKVAERTQALNEAKKRAERANKRKSIHLTVISHELRTPMNGVLGAIEL  420

Query  421  LQTTPLNIEQQGLADTARNCTLSLLAIINNLLDFSRIESGHFTLHMEETALLPLLDQAMQ  480
            LQTTPLNIEQQGLADTARNCTLSLLAIINNLLDFSRIESGHFTLHMEETALLPLLDQAMQ
Sbjct  421  LQTTPLNIEQQGLADTARNCTLSLLAIINNLLDFSRIESGHFTLHMEETALLPLLDQAMQ  480

Query  481  TIQGPAQSKKLSLRTFVGQHVPLYFHTDSIRLRQILVNLLGNAVKFTETGGIRLTVKRHE  540
            TIQGPAQSKKLSLRTFVGQHVPLYFHTDSIRLRQILVNLLGNAVKFTETGGIRLTVKRHE
Sbjct  481  TIQGPAQSKKLSLRTFVGQHVPLYFHTDSIRLRQILVNLLGNAVKFTETGGIRLTVKRHE  540

Query  541  EQLIFLVSDSGKGIEIQQQSQIFTAFYQADTNSQGTGIGLTIASSLAKMMGGNLTLKSVP  600
            EQLIFLVSDSGKGIEIQQQSQIFTAFYQADTNSQGTGIGLTIASSLAKMMGGNLTLKSVP
Sbjct  541  EQLIFLVSDSGKGIEIQQQSQIFTAFYQADTNSQGTGIGLTIASSLAKMMGGNLTLKSVP  600

Query  601  GVGTCVSLVLPLQEYQPPQPIKGTLSAPFCLHRQLACWGIRGEPPHQQNALLNAELLYFS  660
            GVGTCVSLVLPLQEYQPPQPIKGTLSAPFCLHRQLACWGIRGEPPHQQNALLNAELLYFS
Sbjct  601  GVGTCVSLVLPLQEYQPPQPIKGTLSAPFCLHRQLACWGIRGEPPHQQNALLNAELLYFS  660

Query  661  GKLYDLAQQLILCTPNMPVINNLLPPWQLQILLVDDADINRDIIGKMLVSLGQHVTIAAS  720
            GKLYDLAQQLILCTPNMPVINNLLPPWQLQILLVDDADINRDIIGKMLVSLGQHVTIAAS
Sbjct  661  GKLYDLAQQLILCTPNMPVINNLLPPWQLQILLVDDADINRDIIGKMLVSLGQHVTIAAS  720

Query  721  SNEALTLSQQQRFDLVLIDIRMPEIDGIECVRLWHDEPNNLDPDCMFVALSASVATEDIH  780
            SNEALTLSQQQRFDLVLIDIRMPEIDGIECVRLWHDEPNNLDPDCMFVALSASVATEDIH
Sbjct  721  SNEALTLSQQQRFDLVLIDIRMPEIDGIECVRLWHDEPNNLDPDCMFVALSASVATEDIH  780

Query  781  RCKKNGIHHYITKPVTLATLARYISIAAEYQLLRNIELQEQDP  823
            RCKKNGIHHYITKPVTLATLARYISIAAEYQLLRNIELQEQDP
Sbjct  781  RCKKNGIHHYITKPVTLATLARYISIAAEYQLLRNIELQEQDP  823

8) ssrA in NC_016856


> U51927|1|G1|1498305|AAC44299.1|Salmonella_enterica_subsp._enterica_serovar_Typhimurium_LT2|-|1..2468|spiR|-|SpiR
Length=823

 Score = 1262 bits (4787),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 823/823 (100%), Positives = 823/823 (100%), Gaps = 0/823 (0%)

Query  1    MNLLNLKNTLQTslvirltflfllttiiiwllsvltAAYISMVQKRQHIIEDLSVLSEMN  60
            MNLLNLKNTLQTSLVIRLTFLFLLTTIIIWLLSVLTAAYISMVQKRQHIIEDLSVLSEMN
Sbjct  1    MNLLNLKNTLQTSLVIRLTFLFLLTTIIIWLLSVLTAAYISMVQKRQHIIEDLSVLSEMN  60

Query  61   IVLSNQRFEEAERDAKNLMYQCSLATEIHHNDIFPEVSRHLSVGPSNCTPTLNGEKHRLF  120
            IVLSNQRFEEAERDAKNLMYQCSLATEIHHNDIFPEVSRHLSVGPSNCTPTLNGEKHRLF
Sbjct  61   IVLSNQRFEEAERDAKNLMYQCSLATEIHHNDIFPEVSRHLSVGPSNCTPTLNGEKHRLF  120

Query  121  LQSSDIDENSFRRDSFILNHKNEISLLSTDNPSDYSTLQPLTRKSFPLYPTHAGFYWSEP  180
            LQSSDIDENSFRRDSFILNHKNEISLLSTDNPSDYSTLQPLTRKSFPLYPTHAGFYWSEP
Sbjct  121  LQSSDIDENSFRRDSFILNHKNEISLLSTDNPSDYSTLQPLTRKSFPLYPTHAGFYWSEP  180

Query  181  EYINGKGWHASVAVADQQGVFFEVTVKLPDLITKSHLPLDDSIRVWLDQNNHLLPFSYIP  240
            EYINGKGWHASVAVADQQGVFFEVTVKLPDLITKSHLPLDDSIRVWLDQNNHLLPFSYIP
Sbjct  181  EYINGKGWHASVAVADQQGVFFEVTVKLPDLITKSHLPLDDSIRVWLDQNNHLLPFSYIP  240

Query  241  QKIRTQLENVTLHDGWQQIPGFLILRTTLHGPGWSLVTLYPYGNLHNRILKIILQQIPFT  300
            QKIRTQLENVTLHDGWQQIPGFLILRTTLHGPGWSLVTLYPYGNLHNRILKIILQQIPFT
Sbjct  241  QKIRTQLENVTLHDGWQQIPGFLILRTTLHGPGWSLVTLYPYGNLHNRILKIILQQIPFT  300

Query  301  LTALVLMTSAFCWLLHRSLAKPLWRFVDVINKTATAPLSTRLPAQRLDELDSIAGAFNQL  360
            LTALVLMTSAFCWLLHRSLAKPLWRFVDVINKTATAPLSTRLPAQRLDELDSIAGAFNQL
Sbjct  301  LTALVLMTSAFCWLLHRSLAKPLWRFVDVINKTATAPLSTRLPAQRLDELDSIAGAFNQL  360

Query  361  LDTLQVQYDNLENKVAERTQALneakkraerankrkSIHLTVISHELRTPMNGVLGAIEL  420
            LDTLQVQYDNLENKVAERTQALNEAKKRAERANKRKSIHLTVISHELRTPMNGVLGAIEL
Sbjct  361  LDTLQVQYDNLENKVAERTQALNEAKKRAERANKRKSIHLTVISHELRTPMNGVLGAIEL  420

Query  421  LQTTPLNIEQQGLADTARNCTLSLLAIINNLLDFSRIESGHFTLHMEETALLPLLDQAMQ  480
            LQTTPLNIEQQGLADTARNCTLSLLAIINNLLDFSRIESGHFTLHMEETALLPLLDQAMQ
Sbjct  421  LQTTPLNIEQQGLADTARNCTLSLLAIINNLLDFSRIESGHFTLHMEETALLPLLDQAMQ  480

Query  481  TIQGPAQSKKLSLRTFVGQHVPLYFHTDSIRLRQILVNLLGNAVKFTETGGIRLTVKRHE  540
            TIQGPAQSKKLSLRTFVGQHVPLYFHTDSIRLRQILVNLLGNAVKFTETGGIRLTVKRHE
Sbjct  481  TIQGPAQSKKLSLRTFVGQHVPLYFHTDSIRLRQILVNLLGNAVKFTETGGIRLTVKRHE  540

Query  541  EQLIFLVSDSGKGIEIQQQSQIFTAFYQADTNSQGTGIGLTIASSLAKMMGGNLTLKSVP  600
            EQLIFLVSDSGKGIEIQQQSQIFTAFYQADTNSQGTGIGLTIASSLAKMMGGNLTLKSVP
Sbjct  541  EQLIFLVSDSGKGIEIQQQSQIFTAFYQADTNSQGTGIGLTIASSLAKMMGGNLTLKSVP  600

Query  601  GVGTCVSLVLPLQEYQPPQPIKGTLSAPFCLHRQLACWGIRGEPPHQQNALLNAELLYFS  660
            GVGTCVSLVLPLQEYQPPQPIKGTLSAPFCLHRQLACWGIRGEPPHQQNALLNAELLYFS
Sbjct  601  GVGTCVSLVLPLQEYQPPQPIKGTLSAPFCLHRQLACWGIRGEPPHQQNALLNAELLYFS  660

Query  661  GKLYDLAQQLILCTPNMPVINNLLPPWQLQILLVDDADINRDIIGKMLVSLGQHVTIAAS  720
            GKLYDLAQQLILCTPNMPVINNLLPPWQLQILLVDDADINRDIIGKMLVSLGQHVTIAAS
Sbjct  661  GKLYDLAQQLILCTPNMPVINNLLPPWQLQILLVDDADINRDIIGKMLVSLGQHVTIAAS  720

Query  721  SNEALTLSQQQRFDLVLIDIRMPEIDGIECVRLWHDEPNNLDPDCMFVALSASVATEDIH  780
            SNEALTLSQQQRFDLVLIDIRMPEIDGIECVRLWHDEPNNLDPDCMFVALSASVATEDIH
Sbjct  721  SNEALTLSQQQRFDLVLIDIRMPEIDGIECVRLWHDEPNNLDPDCMFVALSASVATEDIH  780

Query  781  RCKKNGIHHYITKPVTLATLARYISIAAEYQLLRNIELQEQDP  823
            RCKKNGIHHYITKPVTLATLARYISIAAEYQLLRNIELQEQDP
Sbjct  781  RCKKNGIHHYITKPVTLATLARYISIAAEYQLLRNIELQEQDP  823

9) spiR in NC_017046


> U51927|1|G1|1498305|AAC44299.1|Salmonella_enterica_subsp._enterica_serovar_Typhimurium_LT2|-|1..2468|spiR|-|SpiR
Length=823

 Score = 1262 bits (4787),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 823/823 (100%), Positives = 823/823 (100%), Gaps = 0/823 (0%)

Query  1    MNLLNLKNTLQTslvirltflfllttiiiwllsvltAAYISMVQKRQHIIEDLSVLSEMN  60
            MNLLNLKNTLQTSLVIRLTFLFLLTTIIIWLLSVLTAAYISMVQKRQHIIEDLSVLSEMN
Sbjct  1    MNLLNLKNTLQTSLVIRLTFLFLLTTIIIWLLSVLTAAYISMVQKRQHIIEDLSVLSEMN  60

Query  61   IVLSNQRFEEAERDAKNLMYQCSLATEIHHNDIFPEVSRHLSVGPSNCTPTLNGEKHRLF  120
            IVLSNQRFEEAERDAKNLMYQCSLATEIHHNDIFPEVSRHLSVGPSNCTPTLNGEKHRLF
Sbjct  61   IVLSNQRFEEAERDAKNLMYQCSLATEIHHNDIFPEVSRHLSVGPSNCTPTLNGEKHRLF  120

Query  121  LQSSDIDENSFRRDSFILNHKNEISLLSTDNPSDYSTLQPLTRKSFPLYPTHAGFYWSEP  180
            LQSSDIDENSFRRDSFILNHKNEISLLSTDNPSDYSTLQPLTRKSFPLYPTHAGFYWSEP
Sbjct  121  LQSSDIDENSFRRDSFILNHKNEISLLSTDNPSDYSTLQPLTRKSFPLYPTHAGFYWSEP  180

Query  181  EYINGKGWHASVAVADQQGVFFEVTVKLPDLITKSHLPLDDSIRVWLDQNNHLLPFSYIP  240
            EYINGKGWHASVAVADQQGVFFEVTVKLPDLITKSHLPLDDSIRVWLDQNNHLLPFSYIP
Sbjct  181  EYINGKGWHASVAVADQQGVFFEVTVKLPDLITKSHLPLDDSIRVWLDQNNHLLPFSYIP  240

Query  241  QKIRTQLENVTLHDGWQQIPGFLILRTTLHGPGWSLVTLYPYGNLHNRILKIILQQIPFT  300
            QKIRTQLENVTLHDGWQQIPGFLILRTTLHGPGWSLVTLYPYGNLHNRILKIILQQIPFT
Sbjct  241  QKIRTQLENVTLHDGWQQIPGFLILRTTLHGPGWSLVTLYPYGNLHNRILKIILQQIPFT  300

Query  301  LTALVLMTSAFCWLLHRSLAKPLWRFVDVINKTATAPLSTRLPAQRLDELDSIAGAFNQL  360
            LTALVLMTSAFCWLLHRSLAKPLWRFVDVINKTATAPLSTRLPAQRLDELDSIAGAFNQL
Sbjct  301  LTALVLMTSAFCWLLHRSLAKPLWRFVDVINKTATAPLSTRLPAQRLDELDSIAGAFNQL  360

Query  361  LDTLQVQYDNLENKVAERTQALneakkraerankrkSIHLTVISHELRTPMNGVLGAIEL  420
            LDTLQVQYDNLENKVAERTQALNEAKKRAERANKRKSIHLTVISHELRTPMNGVLGAIEL
Sbjct  361  LDTLQVQYDNLENKVAERTQALNEAKKRAERANKRKSIHLTVISHELRTPMNGVLGAIEL  420

Query  421  LQTTPLNIEQQGLADTARNCTLSLLAIINNLLDFSRIESGHFTLHMEETALLPLLDQAMQ  480
            LQTTPLNIEQQGLADTARNCTLSLLAIINNLLDFSRIESGHFTLHMEETALLPLLDQAMQ
Sbjct  421  LQTTPLNIEQQGLADTARNCTLSLLAIINNLLDFSRIESGHFTLHMEETALLPLLDQAMQ  480

Query  481  TIQGPAQSKKLSLRTFVGQHVPLYFHTDSIRLRQILVNLLGNAVKFTETGGIRLTVKRHE  540
            TIQGPAQSKKLSLRTFVGQHVPLYFHTDSIRLRQILVNLLGNAVKFTETGGIRLTVKRHE
Sbjct  481  TIQGPAQSKKLSLRTFVGQHVPLYFHTDSIRLRQILVNLLGNAVKFTETGGIRLTVKRHE  540

Query  541  EQLIFLVSDSGKGIEIQQQSQIFTAFYQADTNSQGTGIGLTIASSLAKMMGGNLTLKSVP  600
            EQLIFLVSDSGKGIEIQQQSQIFTAFYQADTNSQGTGIGLTIASSLAKMMGGNLTLKSVP
Sbjct  541  EQLIFLVSDSGKGIEIQQQSQIFTAFYQADTNSQGTGIGLTIASSLAKMMGGNLTLKSVP  600

Query  601  GVGTCVSLVLPLQEYQPPQPIKGTLSAPFCLHRQLACWGIRGEPPHQQNALLNAELLYFS  660
            GVGTCVSLVLPLQEYQPPQPIKGTLSAPFCLHRQLACWGIRGEPPHQQNALLNAELLYFS
Sbjct  601  GVGTCVSLVLPLQEYQPPQPIKGTLSAPFCLHRQLACWGIRGEPPHQQNALLNAELLYFS  660

Query  661  GKLYDLAQQLILCTPNMPVINNLLPPWQLQILLVDDADINRDIIGKMLVSLGQHVTIAAS  720
            GKLYDLAQQLILCTPNMPVINNLLPPWQLQILLVDDADINRDIIGKMLVSLGQHVTIAAS
Sbjct  661  GKLYDLAQQLILCTPNMPVINNLLPPWQLQILLVDDADINRDIIGKMLVSLGQHVTIAAS  720

Query  721  SNEALTLSQQQRFDLVLIDIRMPEIDGIECVRLWHDEPNNLDPDCMFVALSASVATEDIH  780
            SNEALTLSQQQRFDLVLIDIRMPEIDGIECVRLWHDEPNNLDPDCMFVALSASVATEDIH
Sbjct  721  SNEALTLSQQQRFDLVLIDIRMPEIDGIECVRLWHDEPNNLDPDCMFVALSASVATEDIH  780

Query  781  RCKKNGIHHYITKPVTLATLARYISIAAEYQLLRNIELQEQDP  823
            RCKKNGIHHYITKPVTLATLARYISIAAEYQLLRNIELQEQDP
Sbjct  781  RCKKNGIHHYITKPVTLATLARYISIAAEYQLLRNIELQEQDP  823

10) ssrA in NC_003197


> U51927|1|G1|1498305|AAC44299.1|Salmonella_enterica_subsp._enterica_serovar_Typhimurium_LT2|-|1..2468|spiR|-|SpiR
Length=823

 Score = 1262 bits (4787),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 823/823 (100%), Positives = 823/823 (100%), Gaps = 0/823 (0%)

Query  1    MNLLNLKNTLQTslvirltflfllttiiiwllsvltAAYISMVQKRQHIIEDLSVLSEMN  60
            MNLLNLKNTLQTSLVIRLTFLFLLTTIIIWLLSVLTAAYISMVQKRQHIIEDLSVLSEMN
Sbjct  1    MNLLNLKNTLQTSLVIRLTFLFLLTTIIIWLLSVLTAAYISMVQKRQHIIEDLSVLSEMN  60

Query  61   IVLSNQRFEEAERDAKNLMYQCSLATEIHHNDIFPEVSRHLSVGPSNCTPTLNGEKHRLF  120
            IVLSNQRFEEAERDAKNLMYQCSLATEIHHNDIFPEVSRHLSVGPSNCTPTLNGEKHRLF
Sbjct  61   IVLSNQRFEEAERDAKNLMYQCSLATEIHHNDIFPEVSRHLSVGPSNCTPTLNGEKHRLF  120

Query  121  LQSSDIDENSFRRDSFILNHKNEISLLSTDNPSDYSTLQPLTRKSFPLYPTHAGFYWSEP  180
            LQSSDIDENSFRRDSFILNHKNEISLLSTDNPSDYSTLQPLTRKSFPLYPTHAGFYWSEP
Sbjct  121  LQSSDIDENSFRRDSFILNHKNEISLLSTDNPSDYSTLQPLTRKSFPLYPTHAGFYWSEP  180

Query  181  EYINGKGWHASVAVADQQGVFFEVTVKLPDLITKSHLPLDDSIRVWLDQNNHLLPFSYIP  240
            EYINGKGWHASVAVADQQGVFFEVTVKLPDLITKSHLPLDDSIRVWLDQNNHLLPFSYIP
Sbjct  181  EYINGKGWHASVAVADQQGVFFEVTVKLPDLITKSHLPLDDSIRVWLDQNNHLLPFSYIP  240

Query  241  QKIRTQLENVTLHDGWQQIPGFLILRTTLHGPGWSLVTLYPYGNLHNRILKIILQQIPFT  300
            QKIRTQLENVTLHDGWQQIPGFLILRTTLHGPGWSLVTLYPYGNLHNRILKIILQQIPFT
Sbjct  241  QKIRTQLENVTLHDGWQQIPGFLILRTTLHGPGWSLVTLYPYGNLHNRILKIILQQIPFT  300

Query  301  LTALVLMTSAFCWLLHRSLAKPLWRFVDVINKTATAPLSTRLPAQRLDELDSIAGAFNQL  360
            LTALVLMTSAFCWLLHRSLAKPLWRFVDVINKTATAPLSTRLPAQRLDELDSIAGAFNQL
Sbjct  301  LTALVLMTSAFCWLLHRSLAKPLWRFVDVINKTATAPLSTRLPAQRLDELDSIAGAFNQL  360

Query  361  LDTLQVQYDNLENKVAERTQALneakkraerankrkSIHLTVISHELRTPMNGVLGAIEL  420
            LDTLQVQYDNLENKVAERTQALNEAKKRAERANKRKSIHLTVISHELRTPMNGVLGAIEL
Sbjct  361  LDTLQVQYDNLENKVAERTQALNEAKKRAERANKRKSIHLTVISHELRTPMNGVLGAIEL  420

Query  421  LQTTPLNIEQQGLADTARNCTLSLLAIINNLLDFSRIESGHFTLHMEETALLPLLDQAMQ  480
            LQTTPLNIEQQGLADTARNCTLSLLAIINNLLDFSRIESGHFTLHMEETALLPLLDQAMQ
Sbjct  421  LQTTPLNIEQQGLADTARNCTLSLLAIINNLLDFSRIESGHFTLHMEETALLPLLDQAMQ  480

Query  481  TIQGPAQSKKLSLRTFVGQHVPLYFHTDSIRLRQILVNLLGNAVKFTETGGIRLTVKRHE  540
            TIQGPAQSKKLSLRTFVGQHVPLYFHTDSIRLRQILVNLLGNAVKFTETGGIRLTVKRHE
Sbjct  481  TIQGPAQSKKLSLRTFVGQHVPLYFHTDSIRLRQILVNLLGNAVKFTETGGIRLTVKRHE  540

Query  541  EQLIFLVSDSGKGIEIQQQSQIFTAFYQADTNSQGTGIGLTIASSLAKMMGGNLTLKSVP  600
            EQLIFLVSDSGKGIEIQQQSQIFTAFYQADTNSQGTGIGLTIASSLAKMMGGNLTLKSVP
Sbjct  541  EQLIFLVSDSGKGIEIQQQSQIFTAFYQADTNSQGTGIGLTIASSLAKMMGGNLTLKSVP  600

Query  601  GVGTCVSLVLPLQEYQPPQPIKGTLSAPFCLHRQLACWGIRGEPPHQQNALLNAELLYFS  660
            GVGTCVSLVLPLQEYQPPQPIKGTLSAPFCLHRQLACWGIRGEPPHQQNALLNAELLYFS
Sbjct  601  GVGTCVSLVLPLQEYQPPQPIKGTLSAPFCLHRQLACWGIRGEPPHQQNALLNAELLYFS  660

Query  661  GKLYDLAQQLILCTPNMPVINNLLPPWQLQILLVDDADINRDIIGKMLVSLGQHVTIAAS  720
            GKLYDLAQQLILCTPNMPVINNLLPPWQLQILLVDDADINRDIIGKMLVSLGQHVTIAAS
Sbjct  661  GKLYDLAQQLILCTPNMPVINNLLPPWQLQILLVDDADINRDIIGKMLVSLGQHVTIAAS  720

Query  721  SNEALTLSQQQRFDLVLIDIRMPEIDGIECVRLWHDEPNNLDPDCMFVALSASVATEDIH  780
            SNEALTLSQQQRFDLVLIDIRMPEIDGIECVRLWHDEPNNLDPDCMFVALSASVATEDIH
Sbjct  721  SNEALTLSQQQRFDLVLIDIRMPEIDGIECVRLWHDEPNNLDPDCMFVALSASVATEDIH  780

Query  781  RCKKNGIHHYITKPVTLATLARYISIAAEYQLLRNIELQEQDP  823
            RCKKNGIHHYITKPVTLATLARYISIAAEYQLLRNIELQEQDP
Sbjct  781  RCKKNGIHHYITKPVTLATLARYISIAAEYQLLRNIELQEQDP  823

11) spiR in NC_016810


> U51927|1|G1|1498305|AAC44299.1|Salmonella_enterica_subsp._enterica_serovar_Typhimurium_LT2|-|1..2468|spiR|-|SpiR
Length=823

 Score = 1262 bits (4787),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 823/823 (100%), Positives = 823/823 (100%), Gaps = 0/823 (0%)

Query  1    MNLLNLKNTLQTslvirltflfllttiiiwllsvltAAYISMVQKRQHIIEDLSVLSEMN  60
            MNLLNLKNTLQTSLVIRLTFLFLLTTIIIWLLSVLTAAYISMVQKRQHIIEDLSVLSEMN
Sbjct  1    MNLLNLKNTLQTSLVIRLTFLFLLTTIIIWLLSVLTAAYISMVQKRQHIIEDLSVLSEMN  60

Query  61   IVLSNQRFEEAERDAKNLMYQCSLATEIHHNDIFPEVSRHLSVGPSNCTPTLNGEKHRLF  120
            IVLSNQRFEEAERDAKNLMYQCSLATEIHHNDIFPEVSRHLSVGPSNCTPTLNGEKHRLF
Sbjct  61   IVLSNQRFEEAERDAKNLMYQCSLATEIHHNDIFPEVSRHLSVGPSNCTPTLNGEKHRLF  120

Query  121  LQSSDIDENSFRRDSFILNHKNEISLLSTDNPSDYSTLQPLTRKSFPLYPTHAGFYWSEP  180
            LQSSDIDENSFRRDSFILNHKNEISLLSTDNPSDYSTLQPLTRKSFPLYPTHAGFYWSEP
Sbjct  121  LQSSDIDENSFRRDSFILNHKNEISLLSTDNPSDYSTLQPLTRKSFPLYPTHAGFYWSEP  180

Query  181  EYINGKGWHASVAVADQQGVFFEVTVKLPDLITKSHLPLDDSIRVWLDQNNHLLPFSYIP  240
            EYINGKGWHASVAVADQQGVFFEVTVKLPDLITKSHLPLDDSIRVWLDQNNHLLPFSYIP
Sbjct  181  EYINGKGWHASVAVADQQGVFFEVTVKLPDLITKSHLPLDDSIRVWLDQNNHLLPFSYIP  240

Query  241  QKIRTQLENVTLHDGWQQIPGFLILRTTLHGPGWSLVTLYPYGNLHNRILKIILQQIPFT  300
            QKIRTQLENVTLHDGWQQIPGFLILRTTLHGPGWSLVTLYPYGNLHNRILKIILQQIPFT
Sbjct  241  QKIRTQLENVTLHDGWQQIPGFLILRTTLHGPGWSLVTLYPYGNLHNRILKIILQQIPFT  300

Query  301  LTALVLMTSAFCWLLHRSLAKPLWRFVDVINKTATAPLSTRLPAQRLDELDSIAGAFNQL  360
            LTALVLMTSAFCWLLHRSLAKPLWRFVDVINKTATAPLSTRLPAQRLDELDSIAGAFNQL
Sbjct  301  LTALVLMTSAFCWLLHRSLAKPLWRFVDVINKTATAPLSTRLPAQRLDELDSIAGAFNQL  360

Query  361  LDTLQVQYDNLENKVAERTQALneakkraerankrkSIHLTVISHELRTPMNGVLGAIEL  420
            LDTLQVQYDNLENKVAERTQALNEAKKRAERANKRKSIHLTVISHELRTPMNGVLGAIEL
Sbjct  361  LDTLQVQYDNLENKVAERTQALNEAKKRAERANKRKSIHLTVISHELRTPMNGVLGAIEL  420

Query  421  LQTTPLNIEQQGLADTARNCTLSLLAIINNLLDFSRIESGHFTLHMEETALLPLLDQAMQ  480
            LQTTPLNIEQQGLADTARNCTLSLLAIINNLLDFSRIESGHFTLHMEETALLPLLDQAMQ
Sbjct  421  LQTTPLNIEQQGLADTARNCTLSLLAIINNLLDFSRIESGHFTLHMEETALLPLLDQAMQ  480

Query  481  TIQGPAQSKKLSLRTFVGQHVPLYFHTDSIRLRQILVNLLGNAVKFTETGGIRLTVKRHE  540
            TIQGPAQSKKLSLRTFVGQHVPLYFHTDSIRLRQILVNLLGNAVKFTETGGIRLTVKRHE
Sbjct  481  TIQGPAQSKKLSLRTFVGQHVPLYFHTDSIRLRQILVNLLGNAVKFTETGGIRLTVKRHE  540

Query  541  EQLIFLVSDSGKGIEIQQQSQIFTAFYQADTNSQGTGIGLTIASSLAKMMGGNLTLKSVP  600
            EQLIFLVSDSGKGIEIQQQSQIFTAFYQADTNSQGTGIGLTIASSLAKMMGGNLTLKSVP
Sbjct  541  EQLIFLVSDSGKGIEIQQQSQIFTAFYQADTNSQGTGIGLTIASSLAKMMGGNLTLKSVP  600

Query  601  GVGTCVSLVLPLQEYQPPQPIKGTLSAPFCLHRQLACWGIRGEPPHQQNALLNAELLYFS  660
            GVGTCVSLVLPLQEYQPPQPIKGTLSAPFCLHRQLACWGIRGEPPHQQNALLNAELLYFS
Sbjct  601  GVGTCVSLVLPLQEYQPPQPIKGTLSAPFCLHRQLACWGIRGEPPHQQNALLNAELLYFS  660

Query  661  GKLYDLAQQLILCTPNMPVINNLLPPWQLQILLVDDADINRDIIGKMLVSLGQHVTIAAS  720
            GKLYDLAQQLILCTPNMPVINNLLPPWQLQILLVDDADINRDIIGKMLVSLGQHVTIAAS
Sbjct  661  GKLYDLAQQLILCTPNMPVINNLLPPWQLQILLVDDADINRDIIGKMLVSLGQHVTIAAS  720

Query  721  SNEALTLSQQQRFDLVLIDIRMPEIDGIECVRLWHDEPNNLDPDCMFVALSASVATEDIH  780
            SNEALTLSQQQRFDLVLIDIRMPEIDGIECVRLWHDEPNNLDPDCMFVALSASVATEDIH
Sbjct  721  SNEALTLSQQQRFDLVLIDIRMPEIDGIECVRLWHDEPNNLDPDCMFVALSASVATEDIH  780

Query  781  RCKKNGIHHYITKPVTLATLARYISIAAEYQLLRNIELQEQDP  823
            RCKKNGIHHYITKPVTLATLARYISIAAEYQLLRNIELQEQDP
Sbjct  781  RCKKNGIHHYITKPVTLATLARYISIAAEYQLLRNIELQEQDP  823

12) STMDT12_C14080 in NC_016860


> U51927|1|G1|1498305|AAC44299.1|Salmonella_enterica_subsp._enterica_serovar_Typhimurium_LT2|-|1..2468|spiR|-|SpiR
Length=823

 Score = 1262 bits (4787),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 823/823 (100%), Positives = 823/823 (100%), Gaps = 0/823 (0%)

Query  1    MNLLNLKNTLQTslvirltflfllttiiiwllsvltAAYISMVQKRQHIIEDLSVLSEMN  60
            MNLLNLKNTLQTSLVIRLTFLFLLTTIIIWLLSVLTAAYISMVQKRQHIIEDLSVLSEMN
Sbjct  1    MNLLNLKNTLQTSLVIRLTFLFLLTTIIIWLLSVLTAAYISMVQKRQHIIEDLSVLSEMN  60

Query  61   IVLSNQRFEEAERDAKNLMYQCSLATEIHHNDIFPEVSRHLSVGPSNCTPTLNGEKHRLF  120
            IVLSNQRFEEAERDAKNLMYQCSLATEIHHNDIFPEVSRHLSVGPSNCTPTLNGEKHRLF
Sbjct  61   IVLSNQRFEEAERDAKNLMYQCSLATEIHHNDIFPEVSRHLSVGPSNCTPTLNGEKHRLF  120

Query  121  LQSSDIDENSFRRDSFILNHKNEISLLSTDNPSDYSTLQPLTRKSFPLYPTHAGFYWSEP  180
            LQSSDIDENSFRRDSFILNHKNEISLLSTDNPSDYSTLQPLTRKSFPLYPTHAGFYWSEP
Sbjct  121  LQSSDIDENSFRRDSFILNHKNEISLLSTDNPSDYSTLQPLTRKSFPLYPTHAGFYWSEP  180

Query  181  EYINGKGWHASVAVADQQGVFFEVTVKLPDLITKSHLPLDDSIRVWLDQNNHLLPFSYIP  240
            EYINGKGWHASVAVADQQGVFFEVTVKLPDLITKSHLPLDDSIRVWLDQNNHLLPFSYIP
Sbjct  181  EYINGKGWHASVAVADQQGVFFEVTVKLPDLITKSHLPLDDSIRVWLDQNNHLLPFSYIP  240

Query  241  QKIRTQLENVTLHDGWQQIPGFLILRTTLHGPGWSLVTLYPYGNLHNRILKIILQQIPFT  300
            QKIRTQLENVTLHDGWQQIPGFLILRTTLHGPGWSLVTLYPYGNLHNRILKIILQQIPFT
Sbjct  241  QKIRTQLENVTLHDGWQQIPGFLILRTTLHGPGWSLVTLYPYGNLHNRILKIILQQIPFT  300

Query  301  LTALVLMTSAFCWLLHRSLAKPLWRFVDVINKTATAPLSTRLPAQRLDELDSIAGAFNQL  360
            LTALVLMTSAFCWLLHRSLAKPLWRFVDVINKTATAPLSTRLPAQRLDELDSIAGAFNQL
Sbjct  301  LTALVLMTSAFCWLLHRSLAKPLWRFVDVINKTATAPLSTRLPAQRLDELDSIAGAFNQL  360

Query  361  LDTLQVQYDNLENKVAERTQALneakkraerankrkSIHLTVISHELRTPMNGVLGAIEL  420
            LDTLQVQYDNLENKVAERTQALNEAKKRAERANKRKSIHLTVISHELRTPMNGVLGAIEL
Sbjct  361  LDTLQVQYDNLENKVAERTQALNEAKKRAERANKRKSIHLTVISHELRTPMNGVLGAIEL  420

Query  421  LQTTPLNIEQQGLADTARNCTLSLLAIINNLLDFSRIESGHFTLHMEETALLPLLDQAMQ  480
            LQTTPLNIEQQGLADTARNCTLSLLAIINNLLDFSRIESGHFTLHMEETALLPLLDQAMQ
Sbjct  421  LQTTPLNIEQQGLADTARNCTLSLLAIINNLLDFSRIESGHFTLHMEETALLPLLDQAMQ  480

Query  481  TIQGPAQSKKLSLRTFVGQHVPLYFHTDSIRLRQILVNLLGNAVKFTETGGIRLTVKRHE  540
            TIQGPAQSKKLSLRTFVGQHVPLYFHTDSIRLRQILVNLLGNAVKFTETGGIRLTVKRHE
Sbjct  481  TIQGPAQSKKLSLRTFVGQHVPLYFHTDSIRLRQILVNLLGNAVKFTETGGIRLTVKRHE  540

Query  541  EQLIFLVSDSGKGIEIQQQSQIFTAFYQADTNSQGTGIGLTIASSLAKMMGGNLTLKSVP  600
            EQLIFLVSDSGKGIEIQQQSQIFTAFYQADTNSQGTGIGLTIASSLAKMMGGNLTLKSVP
Sbjct  541  EQLIFLVSDSGKGIEIQQQSQIFTAFYQADTNSQGTGIGLTIASSLAKMMGGNLTLKSVP  600

Query  601  GVGTCVSLVLPLQEYQPPQPIKGTLSAPFCLHRQLACWGIRGEPPHQQNALLNAELLYFS  660
            GVGTCVSLVLPLQEYQPPQPIKGTLSAPFCLHRQLACWGIRGEPPHQQNALLNAELLYFS
Sbjct  601  GVGTCVSLVLPLQEYQPPQPIKGTLSAPFCLHRQLACWGIRGEPPHQQNALLNAELLYFS  660

Query  661  GKLYDLAQQLILCTPNMPVINNLLPPWQLQILLVDDADINRDIIGKMLVSLGQHVTIAAS  720
            GKLYDLAQQLILCTPNMPVINNLLPPWQLQILLVDDADINRDIIGKMLVSLGQHVTIAAS
Sbjct  661  GKLYDLAQQLILCTPNMPVINNLLPPWQLQILLVDDADINRDIIGKMLVSLGQHVTIAAS  720

Query  721  SNEALTLSQQQRFDLVLIDIRMPEIDGIECVRLWHDEPNNLDPDCMFVALSASVATEDIH  780
            SNEALTLSQQQRFDLVLIDIRMPEIDGIECVRLWHDEPNNLDPDCMFVALSASVATEDIH
Sbjct  721  SNEALTLSQQQRFDLVLIDIRMPEIDGIECVRLWHDEPNNLDPDCMFVALSASVATEDIH  780

Query  781  RCKKNGIHHYITKPVTLATLARYISIAAEYQLLRNIELQEQDP  823
            RCKKNGIHHYITKPVTLATLARYISIAAEYQLLRNIELQEQDP
Sbjct  781  RCKKNGIHHYITKPVTLATLARYISIAAEYQLLRNIELQEQDP  823

13) STU288_03280 in NC_021151


> U51927|1|G1|1498305|AAC44299.1|Salmonella_enterica_subsp._enterica_serovar_Typhimurium_LT2|-|1..2468|spiR|-|SpiR
Length=823

 Score = 1262 bits (4787),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 823/823 (100%), Positives = 823/823 (100%), Gaps = 0/823 (0%)

Query  1    MNLLNLKNTLQTslvirltflfllttiiiwllsvltAAYISMVQKRQHIIEDLSVLSEMN  60
            MNLLNLKNTLQTSLVIRLTFLFLLTTIIIWLLSVLTAAYISMVQKRQHIIEDLSVLSEMN
Sbjct  1    MNLLNLKNTLQTSLVIRLTFLFLLTTIIIWLLSVLTAAYISMVQKRQHIIEDLSVLSEMN  60

Query  61   IVLSNQRFEEAERDAKNLMYQCSLATEIHHNDIFPEVSRHLSVGPSNCTPTLNGEKHRLF  120
            IVLSNQRFEEAERDAKNLMYQCSLATEIHHNDIFPEVSRHLSVGPSNCTPTLNGEKHRLF
Sbjct  61   IVLSNQRFEEAERDAKNLMYQCSLATEIHHNDIFPEVSRHLSVGPSNCTPTLNGEKHRLF  120

Query  121  LQSSDIDENSFRRDSFILNHKNEISLLSTDNPSDYSTLQPLTRKSFPLYPTHAGFYWSEP  180
            LQSSDIDENSFRRDSFILNHKNEISLLSTDNPSDYSTLQPLTRKSFPLYPTHAGFYWSEP
Sbjct  121  LQSSDIDENSFRRDSFILNHKNEISLLSTDNPSDYSTLQPLTRKSFPLYPTHAGFYWSEP  180

Query  181  EYINGKGWHASVAVADQQGVFFEVTVKLPDLITKSHLPLDDSIRVWLDQNNHLLPFSYIP  240
            EYINGKGWHASVAVADQQGVFFEVTVKLPDLITKSHLPLDDSIRVWLDQNNHLLPFSYIP
Sbjct  181  EYINGKGWHASVAVADQQGVFFEVTVKLPDLITKSHLPLDDSIRVWLDQNNHLLPFSYIP  240

Query  241  QKIRTQLENVTLHDGWQQIPGFLILRTTLHGPGWSLVTLYPYGNLHNRILKIILQQIPFT  300
            QKIRTQLENVTLHDGWQQIPGFLILRTTLHGPGWSLVTLYPYGNLHNRILKIILQQIPFT
Sbjct  241  QKIRTQLENVTLHDGWQQIPGFLILRTTLHGPGWSLVTLYPYGNLHNRILKIILQQIPFT  300

Query  301  LTALVLMTSAFCWLLHRSLAKPLWRFVDVINKTATAPLSTRLPAQRLDELDSIAGAFNQL  360
            LTALVLMTSAFCWLLHRSLAKPLWRFVDVINKTATAPLSTRLPAQRLDELDSIAGAFNQL
Sbjct  301  LTALVLMTSAFCWLLHRSLAKPLWRFVDVINKTATAPLSTRLPAQRLDELDSIAGAFNQL  360

Query  361  LDTLQVQYDNLENKVAERTQALneakkraerankrkSIHLTVISHELRTPMNGVLGAIEL  420
            LDTLQVQYDNLENKVAERTQALNEAKKRAERANKRKSIHLTVISHELRTPMNGVLGAIEL
Sbjct  361  LDTLQVQYDNLENKVAERTQALNEAKKRAERANKRKSIHLTVISHELRTPMNGVLGAIEL  420

Query  421  LQTTPLNIEQQGLADTARNCTLSLLAIINNLLDFSRIESGHFTLHMEETALLPLLDQAMQ  480
            LQTTPLNIEQQGLADTARNCTLSLLAIINNLLDFSRIESGHFTLHMEETALLPLLDQAMQ
Sbjct  421  LQTTPLNIEQQGLADTARNCTLSLLAIINNLLDFSRIESGHFTLHMEETALLPLLDQAMQ  480

Query  481  TIQGPAQSKKLSLRTFVGQHVPLYFHTDSIRLRQILVNLLGNAVKFTETGGIRLTVKRHE  540
            TIQGPAQSKKLSLRTFVGQHVPLYFHTDSIRLRQILVNLLGNAVKFTETGGIRLTVKRHE
Sbjct  481  TIQGPAQSKKLSLRTFVGQHVPLYFHTDSIRLRQILVNLLGNAVKFTETGGIRLTVKRHE  540

Query  541  EQLIFLVSDSGKGIEIQQQSQIFTAFYQADTNSQGTGIGLTIASSLAKMMGGNLTLKSVP  600
            EQLIFLVSDSGKGIEIQQQSQIFTAFYQADTNSQGTGIGLTIASSLAKMMGGNLTLKSVP
Sbjct  541  EQLIFLVSDSGKGIEIQQQSQIFTAFYQADTNSQGTGIGLTIASSLAKMMGGNLTLKSVP  600

Query  601  GVGTCVSLVLPLQEYQPPQPIKGTLSAPFCLHRQLACWGIRGEPPHQQNALLNAELLYFS  660
            GVGTCVSLVLPLQEYQPPQPIKGTLSAPFCLHRQLACWGIRGEPPHQQNALLNAELLYFS
Sbjct  601  GVGTCVSLVLPLQEYQPPQPIKGTLSAPFCLHRQLACWGIRGEPPHQQNALLNAELLYFS  660

Query  661  GKLYDLAQQLILCTPNMPVINNLLPPWQLQILLVDDADINRDIIGKMLVSLGQHVTIAAS  720
            GKLYDLAQQLILCTPNMPVINNLLPPWQLQILLVDDADINRDIIGKMLVSLGQHVTIAAS
Sbjct  661  GKLYDLAQQLILCTPNMPVINNLLPPWQLQILLVDDADINRDIIGKMLVSLGQHVTIAAS  720

Query  721  SNEALTLSQQQRFDLVLIDIRMPEIDGIECVRLWHDEPNNLDPDCMFVALSASVATEDIH  780
            SNEALTLSQQQRFDLVLIDIRMPEIDGIECVRLWHDEPNNLDPDCMFVALSASVATEDIH
Sbjct  721  SNEALTLSQQQRFDLVLIDIRMPEIDGIECVRLWHDEPNNLDPDCMFVALSASVATEDIH  780

Query  781  RCKKNGIHHYITKPVTLATLARYISIAAEYQLLRNIELQEQDP  823
            RCKKNGIHHYITKPVTLATLARYISIAAEYQLLRNIELQEQDP
Sbjct  781  RCKKNGIHHYITKPVTLATLARYISIAAEYQLLRNIELQEQDP  823

14) ssrA in NC_016863


> U51927|1|G1|1498305|AAC44299.1|Salmonella_enterica_subsp._enterica_serovar_Typhimurium_LT2|-|1..2468|spiR|-|SpiR
Length=823

 Score = 1262 bits (4787),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 823/823 (100%), Positives = 823/823 (100%), Gaps = 0/823 (0%)

Query  1    MNLLNLKNTLQTslvirltflfllttiiiwllsvltAAYISMVQKRQHIIEDLSVLSEMN  60
            MNLLNLKNTLQTSLVIRLTFLFLLTTIIIWLLSVLTAAYISMVQKRQHIIEDLSVLSEMN
Sbjct  1    MNLLNLKNTLQTSLVIRLTFLFLLTTIIIWLLSVLTAAYISMVQKRQHIIEDLSVLSEMN  60

Query  61   IVLSNQRFEEAERDAKNLMYQCSLATEIHHNDIFPEVSRHLSVGPSNCTPTLNGEKHRLF  120
            IVLSNQRFEEAERDAKNLMYQCSLATEIHHNDIFPEVSRHLSVGPSNCTPTLNGEKHRLF
Sbjct  61   IVLSNQRFEEAERDAKNLMYQCSLATEIHHNDIFPEVSRHLSVGPSNCTPTLNGEKHRLF  120

Query  121  LQSSDIDENSFRRDSFILNHKNEISLLSTDNPSDYSTLQPLTRKSFPLYPTHAGFYWSEP  180
            LQSSDIDENSFRRDSFILNHKNEISLLSTDNPSDYSTLQPLTRKSFPLYPTHAGFYWSEP
Sbjct  121  LQSSDIDENSFRRDSFILNHKNEISLLSTDNPSDYSTLQPLTRKSFPLYPTHAGFYWSEP  180

Query  181  EYINGKGWHASVAVADQQGVFFEVTVKLPDLITKSHLPLDDSIRVWLDQNNHLLPFSYIP  240
            EYINGKGWHASVAVADQQGVFFEVTVKLPDLITKSHLPLDDSIRVWLDQNNHLLPFSYIP
Sbjct  181  EYINGKGWHASVAVADQQGVFFEVTVKLPDLITKSHLPLDDSIRVWLDQNNHLLPFSYIP  240

Query  241  QKIRTQLENVTLHDGWQQIPGFLILRTTLHGPGWSLVTLYPYGNLHNRILKIILQQIPFT  300
            QKIRTQLENVTLHDGWQQIPGFLILRTTLHGPGWSLVTLYPYGNLHNRILKIILQQIPFT
Sbjct  241  QKIRTQLENVTLHDGWQQIPGFLILRTTLHGPGWSLVTLYPYGNLHNRILKIILQQIPFT  300

Query  301  LTALVLMTSAFCWLLHRSLAKPLWRFVDVINKTATAPLSTRLPAQRLDELDSIAGAFNQL  360
            LTALVLMTSAFCWLLHRSLAKPLWRFVDVINKTATAPLSTRLPAQRLDELDSIAGAFNQL
Sbjct  301  LTALVLMTSAFCWLLHRSLAKPLWRFVDVINKTATAPLSTRLPAQRLDELDSIAGAFNQL  360

Query  361  LDTLQVQYDNLENKVAERTQALneakkraerankrkSIHLTVISHELRTPMNGVLGAIEL  420
            LDTLQVQYDNLENKVAERTQALNEAKKRAERANKRKSIHLTVISHELRTPMNGVLGAIEL
Sbjct  361  LDTLQVQYDNLENKVAERTQALNEAKKRAERANKRKSIHLTVISHELRTPMNGVLGAIEL  420

Query  421  LQTTPLNIEQQGLADTARNCTLSLLAIINNLLDFSRIESGHFTLHMEETALLPLLDQAMQ  480
            LQTTPLNIEQQGLADTARNCTLSLLAIINNLLDFSRIESGHFTLHMEETALLPLLDQAMQ
Sbjct  421  LQTTPLNIEQQGLADTARNCTLSLLAIINNLLDFSRIESGHFTLHMEETALLPLLDQAMQ  480

Query  481  TIQGPAQSKKLSLRTFVGQHVPLYFHTDSIRLRQILVNLLGNAVKFTETGGIRLTVKRHE  540
            TIQGPAQSKKLSLRTFVGQHVPLYFHTDSIRLRQILVNLLGNAVKFTETGGIRLTVKRHE
Sbjct  481  TIQGPAQSKKLSLRTFVGQHVPLYFHTDSIRLRQILVNLLGNAVKFTETGGIRLTVKRHE  540

Query  541  EQLIFLVSDSGKGIEIQQQSQIFTAFYQADTNSQGTGIGLTIASSLAKMMGGNLTLKSVP  600
            EQLIFLVSDSGKGIEIQQQSQIFTAFYQADTNSQGTGIGLTIASSLAKMMGGNLTLKSVP
Sbjct  541  EQLIFLVSDSGKGIEIQQQSQIFTAFYQADTNSQGTGIGLTIASSLAKMMGGNLTLKSVP  600

Query  601  GVGTCVSLVLPLQEYQPPQPIKGTLSAPFCLHRQLACWGIRGEPPHQQNALLNAELLYFS  660
            GVGTCVSLVLPLQEYQPPQPIKGTLSAPFCLHRQLACWGIRGEPPHQQNALLNAELLYFS
Sbjct  601  GVGTCVSLVLPLQEYQPPQPIKGTLSAPFCLHRQLACWGIRGEPPHQQNALLNAELLYFS  660

Query  661  GKLYDLAQQLILCTPNMPVINNLLPPWQLQILLVDDADINRDIIGKMLVSLGQHVTIAAS  720
            GKLYDLAQQLILCTPNMPVINNLLPPWQLQILLVDDADINRDIIGKMLVSLGQHVTIAAS
Sbjct  661  GKLYDLAQQLILCTPNMPVINNLLPPWQLQILLVDDADINRDIIGKMLVSLGQHVTIAAS  720

Query  721  SNEALTLSQQQRFDLVLIDIRMPEIDGIECVRLWHDEPNNLDPDCMFVALSASVATEDIH  780
            SNEALTLSQQQRFDLVLIDIRMPEIDGIECVRLWHDEPNNLDPDCMFVALSASVATEDIH
Sbjct  721  SNEALTLSQQQRFDLVLIDIRMPEIDGIECVRLWHDEPNNLDPDCMFVALSASVATEDIH  780

Query  781  RCKKNGIHHYITKPVTLATLARYISIAAEYQLLRNIELQEQDP  823
            RCKKNGIHHYITKPVTLATLARYISIAAEYQLLRNIELQEQDP
Sbjct  781  RCKKNGIHHYITKPVTLATLARYISIAAEYQLLRNIELQEQDP  823

15) CFSAN001921_10185 in NC_021814


> U51927|1|G1|1498305|AAC44299.1|Salmonella_enterica_subsp._enterica_serovar_Typhimurium_LT2|-|1..2468|spiR|-|SpiR
Length=823

 Score = 1262 bits (4787),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 823/823 (100%), Positives = 823/823 (100%), Gaps = 0/823 (0%)

Query  1    MNLLNLKNTLQTslvirltflfllttiiiwllsvltAAYISMVQKRQHIIEDLSVLSEMN  60
            MNLLNLKNTLQTSLVIRLTFLFLLTTIIIWLLSVLTAAYISMVQKRQHIIEDLSVLSEMN
Sbjct  1    MNLLNLKNTLQTSLVIRLTFLFLLTTIIIWLLSVLTAAYISMVQKRQHIIEDLSVLSEMN  60

Query  61   IVLSNQRFEEAERDAKNLMYQCSLATEIHHNDIFPEVSRHLSVGPSNCTPTLNGEKHRLF  120
            IVLSNQRFEEAERDAKNLMYQCSLATEIHHNDIFPEVSRHLSVGPSNCTPTLNGEKHRLF
Sbjct  61   IVLSNQRFEEAERDAKNLMYQCSLATEIHHNDIFPEVSRHLSVGPSNCTPTLNGEKHRLF  120

Query  121  LQSSDIDENSFRRDSFILNHKNEISLLSTDNPSDYSTLQPLTRKSFPLYPTHAGFYWSEP  180
            LQSSDIDENSFRRDSFILNHKNEISLLSTDNPSDYSTLQPLTRKSFPLYPTHAGFYWSEP
Sbjct  121  LQSSDIDENSFRRDSFILNHKNEISLLSTDNPSDYSTLQPLTRKSFPLYPTHAGFYWSEP  180

Query  181  EYINGKGWHASVAVADQQGVFFEVTVKLPDLITKSHLPLDDSIRVWLDQNNHLLPFSYIP  240
            EYINGKGWHASVAVADQQGVFFEVTVKLPDLITKSHLPLDDSIRVWLDQNNHLLPFSYIP
Sbjct  181  EYINGKGWHASVAVADQQGVFFEVTVKLPDLITKSHLPLDDSIRVWLDQNNHLLPFSYIP  240

Query  241  QKIRTQLENVTLHDGWQQIPGFLILRTTLHGPGWSLVTLYPYGNLHNRILKIILQQIPFT  300
            QKIRTQLENVTLHDGWQQIPGFLILRTTLHGPGWSLVTLYPYGNLHNRILKIILQQIPFT
Sbjct  241  QKIRTQLENVTLHDGWQQIPGFLILRTTLHGPGWSLVTLYPYGNLHNRILKIILQQIPFT  300

Query  301  LTALVLMTSAFCWLLHRSLAKPLWRFVDVINKTATAPLSTRLPAQRLDELDSIAGAFNQL  360
            LTALVLMTSAFCWLLHRSLAKPLWRFVDVINKTATAPLSTRLPAQRLDELDSIAGAFNQL
Sbjct  301  LTALVLMTSAFCWLLHRSLAKPLWRFVDVINKTATAPLSTRLPAQRLDELDSIAGAFNQL  360

Query  361  LDTLQVQYDNLENKVAERTQALneakkraerankrkSIHLTVISHELRTPMNGVLGAIEL  420
            LDTLQVQYDNLENKVAERTQALNEAKKRAERANKRKSIHLTVISHELRTPMNGVLGAIEL
Sbjct  361  LDTLQVQYDNLENKVAERTQALNEAKKRAERANKRKSIHLTVISHELRTPMNGVLGAIEL  420

Query  421  LQTTPLNIEQQGLADTARNCTLSLLAIINNLLDFSRIESGHFTLHMEETALLPLLDQAMQ  480
            LQTTPLNIEQQGLADTARNCTLSLLAIINNLLDFSRIESGHFTLHMEETALLPLLDQAMQ
Sbjct  421  LQTTPLNIEQQGLADTARNCTLSLLAIINNLLDFSRIESGHFTLHMEETALLPLLDQAMQ  480

Query  481  TIQGPAQSKKLSLRTFVGQHVPLYFHTDSIRLRQILVNLLGNAVKFTETGGIRLTVKRHE  540
            TIQGPAQSKKLSLRTFVGQHVPLYFHTDSIRLRQILVNLLGNAVKFTETGGIRLTVKRHE
Sbjct  481  TIQGPAQSKKLSLRTFVGQHVPLYFHTDSIRLRQILVNLLGNAVKFTETGGIRLTVKRHE  540

Query  541  EQLIFLVSDSGKGIEIQQQSQIFTAFYQADTNSQGTGIGLTIASSLAKMMGGNLTLKSVP  600
            EQLIFLVSDSGKGIEIQQQSQIFTAFYQADTNSQGTGIGLTIASSLAKMMGGNLTLKSVP
Sbjct  541  EQLIFLVSDSGKGIEIQQQSQIFTAFYQADTNSQGTGIGLTIASSLAKMMGGNLTLKSVP  600

Query  601  GVGTCVSLVLPLQEYQPPQPIKGTLSAPFCLHRQLACWGIRGEPPHQQNALLNAELLYFS  660
            GVGTCVSLVLPLQEYQPPQPIKGTLSAPFCLHRQLACWGIRGEPPHQQNALLNAELLYFS
Sbjct  601  GVGTCVSLVLPLQEYQPPQPIKGTLSAPFCLHRQLACWGIRGEPPHQQNALLNAELLYFS  660

Query  661  GKLYDLAQQLILCTPNMPVINNLLPPWQLQILLVDDADINRDIIGKMLVSLGQHVTIAAS  720
            GKLYDLAQQLILCTPNMPVINNLLPPWQLQILLVDDADINRDIIGKMLVSLGQHVTIAAS
Sbjct  661  GKLYDLAQQLILCTPNMPVINNLLPPWQLQILLVDDADINRDIIGKMLVSLGQHVTIAAS  720

Query  721  SNEALTLSQQQRFDLVLIDIRMPEIDGIECVRLWHDEPNNLDPDCMFVALSASVATEDIH  780
            SNEALTLSQQQRFDLVLIDIRMPEIDGIECVRLWHDEPNNLDPDCMFVALSASVATEDIH
Sbjct  721  SNEALTLSQQQRFDLVLIDIRMPEIDGIECVRLWHDEPNNLDPDCMFVALSASVATEDIH  780

Query  781  RCKKNGIHHYITKPVTLATLARYISIAAEYQLLRNIELQEQDP  823
            RCKKNGIHHYITKPVTLATLARYISIAAEYQLLRNIELQEQDP
Sbjct  781  RCKKNGIHHYITKPVTLATLARYISIAAEYQLLRNIELQEQDP  823

16) ssrA in NC_016857


> U51927|1|G1|1498305|AAC44299.1|Salmonella_enterica_subsp._enterica_serovar_Typhimurium_LT2|-|1..2468|spiR|-|SpiR
Length=823

 Score = 1261 bits (4783),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 823/823 (100%), Positives = 823/823 (100%), Gaps = 0/823 (0%)

Query  17   MNLLNLKNTLQTslvirltflfllttiiiwllsvltAAYISMVQKRQHIIEDLSVLSEMN  76
            MNLLNLKNTLQTSLVIRLTFLFLLTTIIIWLLSVLTAAYISMVQKRQHIIEDLSVLSEMN
Sbjct  1    MNLLNLKNTLQTSLVIRLTFLFLLTTIIIWLLSVLTAAYISMVQKRQHIIEDLSVLSEMN  60

Query  77   IVLSNQRFEEAERDAKNLMYQCSLATEIHHNDIFPEVSRHLSVGPSNCTPTLNGEKHRLF  136
            IVLSNQRFEEAERDAKNLMYQCSLATEIHHNDIFPEVSRHLSVGPSNCTPTLNGEKHRLF
Sbjct  61   IVLSNQRFEEAERDAKNLMYQCSLATEIHHNDIFPEVSRHLSVGPSNCTPTLNGEKHRLF  120

Query  137  LQSSDIDENSFRRDSFILNHKNEISLLSTDNPSDYSTLQPLTRKSFPLYPTHAGFYWSEP  196
            LQSSDIDENSFRRDSFILNHKNEISLLSTDNPSDYSTLQPLTRKSFPLYPTHAGFYWSEP
Sbjct  121  LQSSDIDENSFRRDSFILNHKNEISLLSTDNPSDYSTLQPLTRKSFPLYPTHAGFYWSEP  180

Query  197  EYINGKGWHASVAVADQQGVFFEVTVKLPDLITKSHLPLDDSIRVWLDQNNHLLPFSYIP  256
            EYINGKGWHASVAVADQQGVFFEVTVKLPDLITKSHLPLDDSIRVWLDQNNHLLPFSYIP
Sbjct  181  EYINGKGWHASVAVADQQGVFFEVTVKLPDLITKSHLPLDDSIRVWLDQNNHLLPFSYIP  240

Query  257  QKIRTQLENVTLHDGWQQIPGFLILRTTLHGPGWSLVTLYPYGNLHNRILKIILQQIPFT  316
            QKIRTQLENVTLHDGWQQIPGFLILRTTLHGPGWSLVTLYPYGNLHNRILKIILQQIPFT
Sbjct  241  QKIRTQLENVTLHDGWQQIPGFLILRTTLHGPGWSLVTLYPYGNLHNRILKIILQQIPFT  300

Query  317  LTALVLMTSAFCWLLHRSLAKPLWRFVDVINKTATAPLSTRLPAQRLDELDSIAGAFNQL  376
            LTALVLMTSAFCWLLHRSLAKPLWRFVDVINKTATAPLSTRLPAQRLDELDSIAGAFNQL
Sbjct  301  LTALVLMTSAFCWLLHRSLAKPLWRFVDVINKTATAPLSTRLPAQRLDELDSIAGAFNQL  360

Query  377  LDTLQVQYDNLENKVAERTQALneakkraerankrkSIHLTVISHELRTPMNGVLGAIEL  436
            LDTLQVQYDNLENKVAERTQALNEAKKRAERANKRKSIHLTVISHELRTPMNGVLGAIEL
Sbjct  361  LDTLQVQYDNLENKVAERTQALNEAKKRAERANKRKSIHLTVISHELRTPMNGVLGAIEL  420

Query  437  LQTTPLNIEQQGLADTARNCTLSLLAIINNLLDFSRIESGHFTLHMEETALLPLLDQAMQ  496
            LQTTPLNIEQQGLADTARNCTLSLLAIINNLLDFSRIESGHFTLHMEETALLPLLDQAMQ
Sbjct  421  LQTTPLNIEQQGLADTARNCTLSLLAIINNLLDFSRIESGHFTLHMEETALLPLLDQAMQ  480

Query  497  TIQGPAQSKKLSLRTFVGQHVPLYFHTDSIRLRQILVNLLGNAVKFTETGGIRLTVKRHE  556
            TIQGPAQSKKLSLRTFVGQHVPLYFHTDSIRLRQILVNLLGNAVKFTETGGIRLTVKRHE
Sbjct  481  TIQGPAQSKKLSLRTFVGQHVPLYFHTDSIRLRQILVNLLGNAVKFTETGGIRLTVKRHE  540

Query  557  EQLIFLVSDSGKGIEIQQQSQIFTAFYQADTNSQGTGIGLTIASSLAKMMGGNLTLKSVP  616
            EQLIFLVSDSGKGIEIQQQSQIFTAFYQADTNSQGTGIGLTIASSLAKMMGGNLTLKSVP
Sbjct  541  EQLIFLVSDSGKGIEIQQQSQIFTAFYQADTNSQGTGIGLTIASSLAKMMGGNLTLKSVP  600

Query  617  GVGTCVSLVLPLQEYQPPQPIKGTLSAPFCLHRQLACWGIRGEPPHQQNALLNAELLYFS  676
            GVGTCVSLVLPLQEYQPPQPIKGTLSAPFCLHRQLACWGIRGEPPHQQNALLNAELLYFS
Sbjct  601  GVGTCVSLVLPLQEYQPPQPIKGTLSAPFCLHRQLACWGIRGEPPHQQNALLNAELLYFS  660

Query  677  GKLYDLAQQLILCTPNMPVINNLLPPWQLQILLVDDADINRDIIGKMLVSLGQHVTIAAS  736
            GKLYDLAQQLILCTPNMPVINNLLPPWQLQILLVDDADINRDIIGKMLVSLGQHVTIAAS
Sbjct  661  GKLYDLAQQLILCTPNMPVINNLLPPWQLQILLVDDADINRDIIGKMLVSLGQHVTIAAS  720

Query  737  SNEALTLSQQQRFDLVLIDIRMPEIDGIECVRLWHDEPNNLDPDCMFVALSASVATEDIH  796
            SNEALTLSQQQRFDLVLIDIRMPEIDGIECVRLWHDEPNNLDPDCMFVALSASVATEDIH
Sbjct  721  SNEALTLSQQQRFDLVLIDIRMPEIDGIECVRLWHDEPNNLDPDCMFVALSASVATEDIH  780

Query  797  RCKKNGIHHYITKPVTLATLARYISIAAEYQLLRNIELQEQDP  839
            RCKKNGIHHYITKPVTLATLARYISIAAEYQLLRNIELQEQDP
Sbjct  781  RCKKNGIHHYITKPVTLATLARYISIAAEYQLLRNIELQEQDP  823

17) STMMW_13971 in NC_016854


> U51927|1|G1|1498305|AAC44299.1|Salmonella_enterica_subsp._enterica_serovar_Typhimurium_LT2|-|1..2468|spiR|-|SpiR
Length=823

 Score = 1260 bits (4782),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 822/823 (99%), Positives = 823/823 (100%), Gaps = 0/823 (0%)

Query  1    MNLLNLKNTLQTslvirltflfllttiiiwllsvltAAYISMVQKRQHIIEGLSVLSEMN  60
            MNLLNLKNTLQTSLVIRLTFLFLLTTIIIWLLSVLTAAYISMVQKRQHIIE+LSVLSEMN
Sbjct  1    MNLLNLKNTLQTSLVIRLTFLFLLTTIIIWLLSVLTAAYISMVQKRQHIIEDLSVLSEMN  60

Query  61   IVLSNQRFEEAERDAKNLMYQCSLATEIHHNDIFPEVSRHLSVGPSNCTPTLNGEKHRLF  120
            IVLSNQRFEEAERDAKNLMYQCSLATEIHHNDIFPEVSRHLSVGPSNCTPTLNGEKHRLF
Sbjct  61   IVLSNQRFEEAERDAKNLMYQCSLATEIHHNDIFPEVSRHLSVGPSNCTPTLNGEKHRLF  120

Query  121  LQSSDIDENSFRRDSFILNHKNEISLLSTDNPSDYSTLQPLTRKSFPLYPTHAGFYWSEP  180
            LQSSDIDENSFRRDSFILNHKNEISLLSTDNPSDYSTLQPLTRKSFPLYPTHAGFYWSEP
Sbjct  121  LQSSDIDENSFRRDSFILNHKNEISLLSTDNPSDYSTLQPLTRKSFPLYPTHAGFYWSEP  180

Query  181  EYINGKGWHASVAVADQQGVFFEVTVKLPDLITKSHLPLDDSIRVWLDQNNHLLPFSYIP  240
            EYINGKGWHASVAVADQQGVFFEVTVKLPDLITKSHLPLDDSIRVWLDQNNHLLPFSYIP
Sbjct  181  EYINGKGWHASVAVADQQGVFFEVTVKLPDLITKSHLPLDDSIRVWLDQNNHLLPFSYIP  240

Query  241  QKIRTQLENVTLHDGWQQIPGFLILRTTLHGPGWSLVTLYPYGNLHNRILKIILQQIPFT  300
            QKIRTQLENVTLHDGWQQIPGFLILRTTLHGPGWSLVTLYPYGNLHNRILKIILQQIPFT
Sbjct  241  QKIRTQLENVTLHDGWQQIPGFLILRTTLHGPGWSLVTLYPYGNLHNRILKIILQQIPFT  300

Query  301  LTALVLMTSAFCWLLHRSLAKPLWRFVDVINKTATAPLSTRLPAQRLDELDSIAGAFNQL  360
            LTALVLMTSAFCWLLHRSLAKPLWRFVDVINKTATAPLSTRLPAQRLDELDSIAGAFNQL
Sbjct  301  LTALVLMTSAFCWLLHRSLAKPLWRFVDVINKTATAPLSTRLPAQRLDELDSIAGAFNQL  360

Query  361  LDTLQVQYDNLENKVAERTQALneakkraerankrkSIHLTVISHELRTPMNGVLGAIEL  420
            LDTLQVQYDNLENKVAERTQALNEAKKRAERANKRKSIHLTVISHELRTPMNGVLGAIEL
Sbjct  361  LDTLQVQYDNLENKVAERTQALNEAKKRAERANKRKSIHLTVISHELRTPMNGVLGAIEL  420

Query  421  LQTTPLNIEQQGLADTARNCTLSLLAIINNLLDFSRIESGHFTLHMEETALLPLLDQAMQ  480
            LQTTPLNIEQQGLADTARNCTLSLLAIINNLLDFSRIESGHFTLHMEETALLPLLDQAMQ
Sbjct  421  LQTTPLNIEQQGLADTARNCTLSLLAIINNLLDFSRIESGHFTLHMEETALLPLLDQAMQ  480

Query  481  TIQGPAQSKKLSLRTFVGQHVPLYFHTDSIRLRQILVNLLGNAVKFTETGGIRLTVKRHE  540
            TIQGPAQSKKLSLRTFVGQHVPLYFHTDSIRLRQILVNLLGNAVKFTETGGIRLTVKRHE
Sbjct  481  TIQGPAQSKKLSLRTFVGQHVPLYFHTDSIRLRQILVNLLGNAVKFTETGGIRLTVKRHE  540

Query  541  EQLIFLVSDSGKGIEIQQQSQIFTAFYQADTNSQGTGIGLTIASSLAKMMGGNLTLKSVP  600
            EQLIFLVSDSGKGIEIQQQSQIFTAFYQADTNSQGTGIGLTIASSLAKMMGGNLTLKSVP
Sbjct  541  EQLIFLVSDSGKGIEIQQQSQIFTAFYQADTNSQGTGIGLTIASSLAKMMGGNLTLKSVP  600

Query  601  GVGTCVSLVLPLQEYQPPQPIKGTLSAPFCLHRQLACWGIRGEPPHQQNALLNAELLYFS  660
            GVGTCVSLVLPLQEYQPPQPIKGTLSAPFCLHRQLACWGIRGEPPHQQNALLNAELLYFS
Sbjct  601  GVGTCVSLVLPLQEYQPPQPIKGTLSAPFCLHRQLACWGIRGEPPHQQNALLNAELLYFS  660

Query  661  GKLYDLAQQLILCTPNMPVINNLLPPWQLQILLVDDADINRDIIGKMLVSLGQHVTIAAS  720
            GKLYDLAQQLILCTPNMPVINNLLPPWQLQILLVDDADINRDIIGKMLVSLGQHVTIAAS
Sbjct  661  GKLYDLAQQLILCTPNMPVINNLLPPWQLQILLVDDADINRDIIGKMLVSLGQHVTIAAS  720

Query  721  SNEALTLSQQQRFDLVLIDIRMPEIDGIECVRLWHDEPNNLDPDCMFVALSASVATEDIH  780
            SNEALTLSQQQRFDLVLIDIRMPEIDGIECVRLWHDEPNNLDPDCMFVALSASVATEDIH
Sbjct  721  SNEALTLSQQQRFDLVLIDIRMPEIDGIECVRLWHDEPNNLDPDCMFVALSASVATEDIH  780

Query  781  RCKKNGIHHYITKPVTLATLARYISIAAEYQLLRNIELQEQDP  823
            RCKKNGIHHYITKPVTLATLARYISIAAEYQLLRNIELQEQDP
Sbjct  781  RCKKNGIHHYITKPVTLATLARYISIAAEYQLLRNIELQEQDP  823

18) SEEH1578_16195 in NC_021810


> U51927|1|G1|1498305|AAC44299.1|Salmonella_enterica_subsp._enterica_serovar_Typhimurium_LT2|-|1..2468|spiR|-|SpiR
Length=823

 Score = 1258 bits (4771),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 820/823 (99%), Positives = 822/823 (99%), Gaps = 0/823 (0%)

Query  1    MNLLNLKNTLQTslvirltflfllttiiiwllsvltAAYISMVQKRQHIIEDLSVLSEMN  60
            MNLLNLKNTLQTSLVIRLTFLFLLTTIIIWLLSVLTAAYISMVQKRQHIIEDLSVLSEMN
Sbjct  1    MNLLNLKNTLQTSLVIRLTFLFLLTTIIIWLLSVLTAAYISMVQKRQHIIEDLSVLSEMN  60

Query  61   IVLSNQRFEEAERDAKNLMYQCSLATEIHHNDIFPEVSRHLSVGPSNCTPTLNGEKHRLF  120
            IVLSNQRFEEAERDAKNLMYQCSLATEIHHNDIFPEVSRHLSVGPSNCTPTLNGEKHRLF
Sbjct  61   IVLSNQRFEEAERDAKNLMYQCSLATEIHHNDIFPEVSRHLSVGPSNCTPTLNGEKHRLF  120

Query  121  LQSSDIDENSFRRDSFILNHKNEISLLSTDNPSDYSTLQPLTRKSFPLYPTHAGFYWSEP  180
            LQSSDIDENSFRRDSFILNHKNEISLLSTDNPSDYSTLQPLTRKSFPLYPTHAGFYWSEP
Sbjct  121  LQSSDIDENSFRRDSFILNHKNEISLLSTDNPSDYSTLQPLTRKSFPLYPTHAGFYWSEP  180

Query  181  EYINGKGWHASVAVADQQGVFFGVTVKLPDLITKSHLPLDDSIRVWLDQNNHLLPFSYIP  240
            EYINGKGWHASVAVADQQGVFF VTVKLPDLITKSHLPLDDSIRVWLDQNNHLLPFSYIP
Sbjct  181  EYINGKGWHASVAVADQQGVFFEVTVKLPDLITKSHLPLDDSIRVWLDQNNHLLPFSYIP  240

Query  241  QKIRTQLENVTLHDGWQQIPGFLILRTTLHGPGWSLVTLYPYGNLHNRILKIILQQIPFT  300
            QKIRTQLENVTLHDGWQQIPGFLILRTTLHGPGWSLVTLYPYGNLHNRILKIILQQIPFT
Sbjct  241  QKIRTQLENVTLHDGWQQIPGFLILRTTLHGPGWSLVTLYPYGNLHNRILKIILQQIPFT  300

Query  301  LTALVLMTSAFCWLLHRSLAKPLWRFVDVINKTATAPLSTRLPAQRLDELDSIAGAFNQL  360
            LTALVLMTSAFCWLLHRSLAKPLWRFVDVINKTATAPLSTRLPAQRLDELDSIAGAFNQL
Sbjct  301  LTALVLMTSAFCWLLHRSLAKPLWRFVDVINKTATAPLSTRLPAQRLDELDSIAGAFNQL  360

Query  361  LDTLQVQYDNLENKVAERTQALneakkraerankrkSIHLTVISHELRTPMNGVLGAIEL  420
            LDTLQVQYDNLENKVAERTQALNEAKKRAERANKRKSIHLTVISHELRTPMNGVLGAIEL
Sbjct  361  LDTLQVQYDNLENKVAERTQALNEAKKRAERANKRKSIHLTVISHELRTPMNGVLGAIEL  420

Query  421  LQTTPLNIEQQGLADTARNCTLSLLAIINNLLDFSRIESGHFTLHMEETALLPLLDQAMQ  480
            LQTTPLNIEQQGLADTARNCTLSLLAIINNLLDFSRIESGHFTLHMEETALLPLLDQAMQ
Sbjct  421  LQTTPLNIEQQGLADTARNCTLSLLAIINNLLDFSRIESGHFTLHMEETALLPLLDQAMQ  480

Query  481  TIQGPAQSKKLSLRTFVGQHVPLYFHTDSIRLRQILVNLLGNAVKFTETGGIRLTVKRHE  540
            TIQGPAQSKKLSLRTFVGQHVPLYFHTDSIRLRQILVNLLGNAVKFTETGGIRLTVKRHE
Sbjct  481  TIQGPAQSKKLSLRTFVGQHVPLYFHTDSIRLRQILVNLLGNAVKFTETGGIRLTVKRHE  540

Query  541  EQLIFLVSDSGKGIEIQQQSQIFTAFYQADTNSQGTGIGLTIASSLAKMMGGNLTLKSVP  600
            EQLIFLVSDSGKGIEIQQQSQIFTAFYQADTNSQGTGIGLTIASSLAKMMGGNLTLKSVP
Sbjct  541  EQLIFLVSDSGKGIEIQQQSQIFTAFYQADTNSQGTGIGLTIASSLAKMMGGNLTLKSVP  600

Query  601  GVGTCVSLVLPLQEYQPPQPIKGTLSAPFCLHRQLACWGIRGEPPHQQNALLNAELLYFP  660
            GVGTCVSLVLPLQEYQPPQPIKGTLSAPFCLHRQLACWGIRGEPPHQQNALLNAELLYF+
Sbjct  601  GVGTCVSLVLPLQEYQPPQPIKGTLSAPFCLHRQLACWGIRGEPPHQQNALLNAELLYFS  660

Query  661  GKLYDLAQQLILCTPNMPVINNLLPPWQLQILLVDDADINRDIIGKMLVSLGQHVTIAAS  720
            GKLYDLAQQLILCTPNMPVINNLLPPWQLQILLVDDADINRDIIGKMLVSLGQHVTIAAS
Sbjct  661  GKLYDLAQQLILCTPNMPVINNLLPPWQLQILLVDDADINRDIIGKMLVSLGQHVTIAAS  720

Query  721  SNEALTLSQQQRFDLVLIDIRMPEIDGIECVQLWHDEPNNLDPDCMFVALSASVATEDIH  780
            SNEALTLSQQQRFDLVLIDIRMPEIDGIECV+LWHDEPNNLDPDCMFVALSASVATEDIH
Sbjct  721  SNEALTLSQQQRFDLVLIDIRMPEIDGIECVRLWHDEPNNLDPDCMFVALSASVATEDIH  780

Query  781  RCKKNGIHHYITKPVTLATLARYISIAAEYQLLRNIELQEQDP  823
            RCKKNGIHHYITKPVTLATLARYISIAAEYQLLRNIELQEQDP
Sbjct  781  RCKKNGIHHYITKPVTLATLARYISIAAEYQLLRNIELQEQDP  823

19) SU5_02009 in NC_017623


> U51927|1|G1|1498305|AAC44299.1|Salmonella_enterica_subsp._enterica_serovar_Typhimurium_LT2|-|1..2468|spiR|-|SpiR
Length=823

 Score = 1258 bits (4771),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 820/823 (99%), Positives = 822/823 (99%), Gaps = 0/823 (0%)

Query  1    MNLLNLKNTLQTslvirltflfllttiiiwllsvltAAYISMVQKRQHIIEDLSVLSEMN  60
            MNLLNLKNTLQTSLVIRLTFLFLLTTIIIWLLSVLTAAYISMVQKRQHIIEDLSVLSEMN
Sbjct  1    MNLLNLKNTLQTSLVIRLTFLFLLTTIIIWLLSVLTAAYISMVQKRQHIIEDLSVLSEMN  60

Query  61   IVLSNQRFEEAERDAKNLMYQCSLATEIHHNDIFPEVSRHLSVGPSNCTPTLNGEKHRLF  120
            IVLSNQRFEEAERDAKNLMYQCSLATEIHHNDIFPEVSRHLSVGPSNCTPTLNGEKHRLF
Sbjct  61   IVLSNQRFEEAERDAKNLMYQCSLATEIHHNDIFPEVSRHLSVGPSNCTPTLNGEKHRLF  120

Query  121  LQSSDIDENSFRRDSFILNHKNEISLLSTDNPSDYSTLQPLTRKSFPLYPTHAGFYWSEP  180
            LQSSDIDENSFRRDSFILNHKNEISLLSTDNPSDYSTLQPLTRKSFPLYPTHAGFYWSEP
Sbjct  121  LQSSDIDENSFRRDSFILNHKNEISLLSTDNPSDYSTLQPLTRKSFPLYPTHAGFYWSEP  180

Query  181  EYINGKGWHASVAVADQQGVFFGVTVKLPDLITKSHLPLDDSIRVWLDQNNHLLPFSYIP  240
            EYINGKGWHASVAVADQQGVFF VTVKLPDLITKSHLPLDDSIRVWLDQNNHLLPFSYIP
Sbjct  181  EYINGKGWHASVAVADQQGVFFEVTVKLPDLITKSHLPLDDSIRVWLDQNNHLLPFSYIP  240

Query  241  QKIRTQLENVTLHDGWQQIPGFLILRTTLHGPGWSLVTLYPYGNLHNRILKIILQQIPFT  300
            QKIRTQLENVTLHDGWQQIPGFLILRTTLHGPGWSLVTLYPYGNLHNRILKIILQQIPFT
Sbjct  241  QKIRTQLENVTLHDGWQQIPGFLILRTTLHGPGWSLVTLYPYGNLHNRILKIILQQIPFT  300

Query  301  LTALVLMTSAFCWLLHRSLAKPLWRFVDVINKTATAPLSTRLPAQRLDELDSIAGAFNQL  360
            LTALVLMTSAFCWLLHRSLAKPLWRFVDVINKTATAPLSTRLPAQRLDELDSIAGAFNQL
Sbjct  301  LTALVLMTSAFCWLLHRSLAKPLWRFVDVINKTATAPLSTRLPAQRLDELDSIAGAFNQL  360

Query  361  LDTLQVQYDNLENKVAERTQALneakkraerankrkSIHLTVISHELRTPMNGVLGAIEL  420
            LDTLQVQYDNLENKVAERTQALNEAKKRAERANKRKSIHLTVISHELRTPMNGVLGAIEL
Sbjct  361  LDTLQVQYDNLENKVAERTQALNEAKKRAERANKRKSIHLTVISHELRTPMNGVLGAIEL  420

Query  421  LQTTPLNIEQQGLADTARNCTLSLLAIINNLLDFSRIESGHFTLHMEETALLPLLDQAMQ  480
            LQTTPLNIEQQGLADTARNCTLSLLAIINNLLDFSRIESGHFTLHMEETALLPLLDQAMQ
Sbjct  421  LQTTPLNIEQQGLADTARNCTLSLLAIINNLLDFSRIESGHFTLHMEETALLPLLDQAMQ  480

Query  481  TIQGPAQSKKLSLRTFVGQHVPLYFHTDSIRLRQILVNLLGNAVKFTETGGIRLTVKRHE  540
            TIQGPAQSKKLSLRTFVGQHVPLYFHTDSIRLRQILVNLLGNAVKFTETGGIRLTVKRHE
Sbjct  481  TIQGPAQSKKLSLRTFVGQHVPLYFHTDSIRLRQILVNLLGNAVKFTETGGIRLTVKRHE  540

Query  541  EQLIFLVSDSGKGIEIQQQSQIFTAFYQADTNSQGTGIGLTIASSLAKMMGGNLTLKSVP  600
            EQLIFLVSDSGKGIEIQQQSQIFTAFYQADTNSQGTGIGLTIASSLAKMMGGNLTLKSVP
Sbjct  541  EQLIFLVSDSGKGIEIQQQSQIFTAFYQADTNSQGTGIGLTIASSLAKMMGGNLTLKSVP  600

Query  601  GVGTCVSLVLPLQEYQPPQPIKGTLSAPFCLHRQLACWGIRGEPPHQQNALLNAELLYFP  660
            GVGTCVSLVLPLQEYQPPQPIKGTLSAPFCLHRQLACWGIRGEPPHQQNALLNAELLYF+
Sbjct  601  GVGTCVSLVLPLQEYQPPQPIKGTLSAPFCLHRQLACWGIRGEPPHQQNALLNAELLYFS  660

Query  661  GKLYDLAQQLILCTPNMPVINNLLPPWQLQILLVDDADINRDIIGKMLVSLGQHVTIAAS  720
            GKLYDLAQQLILCTPNMPVINNLLPPWQLQILLVDDADINRDIIGKMLVSLGQHVTIAAS
Sbjct  661  GKLYDLAQQLILCTPNMPVINNLLPPWQLQILLVDDADINRDIIGKMLVSLGQHVTIAAS  720

Query  721  SNEALTLSQQQRFDLVLIDIRMPEIDGIECVQLWHDEPNNLDPDCMFVALSASVATEDIH  780
            SNEALTLSQQQRFDLVLIDIRMPEIDGIECV+LWHDEPNNLDPDCMFVALSASVATEDIH
Sbjct  721  SNEALTLSQQQRFDLVLIDIRMPEIDGIECVRLWHDEPNNLDPDCMFVALSASVATEDIH  780

Query  781  RCKKNGIHHYITKPVTLATLARYISIAAEYQLLRNIELQEQDP  823
            RCKKNGIHHYITKPVTLATLARYISIAAEYQLLRNIELQEQDP
Sbjct  781  RCKKNGIHHYITKPVTLATLARYISIAAEYQLLRNIELQEQDP  823

20) CFSAN002069_02040 in NC_021812


> U51927|1|G1|1498305|AAC44299.1|Salmonella_enterica_subsp._enterica_serovar_Typhimurium_LT2|-|1..2468|spiR|-|SpiR
Length=823

 Score = 1258 bits (4771),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 820/823 (99%), Positives = 822/823 (99%), Gaps = 0/823 (0%)

Query  1    MNLLNLKNTLQTslvirltflfllttiiiwllsvltAAYISMVQKRQHIIEDLSVLSEMN  60
            MNLLNLKNTLQTSLVIRLTFLFLLTTIIIWLLSVLTAAYISMVQKRQHIIEDLSVLSEMN
Sbjct  1    MNLLNLKNTLQTSLVIRLTFLFLLTTIIIWLLSVLTAAYISMVQKRQHIIEDLSVLSEMN  60

Query  61   IVLSNQRFEEAERDAKNLMYQCSLATEIHHNDIFPEVSRHLSVGPSNCTPTLNGEKHRLF  120
            IVLSNQRFEEAERDAKNLMYQCSLATEIHHNDIFPEVSRHLSVGPSNCTPTLNGEKHRLF
Sbjct  61   IVLSNQRFEEAERDAKNLMYQCSLATEIHHNDIFPEVSRHLSVGPSNCTPTLNGEKHRLF  120

Query  121  LQSSDIDENSFRRDSFILNHKNEISLLSTDNPSDYSTLQPLTRKSFPLYPTHAGFYWSEP  180
            LQSSDIDENSFRRDSFILNHKNEISLLSTDNPSDYSTLQPLTRKSFPLYPTHAGFYWSEP
Sbjct  121  LQSSDIDENSFRRDSFILNHKNEISLLSTDNPSDYSTLQPLTRKSFPLYPTHAGFYWSEP  180

Query  181  EYINGKGWHASVAVADQQGVFFGVTVKLPDLITKSHLPLDDSIRVWLDQNNHLLPFSYIP  240
            EYINGKGWHASVAVADQQGVFF VTVKLPDLITKSHLPLDDSIRVWLDQNNHLLPFSYIP
Sbjct  181  EYINGKGWHASVAVADQQGVFFEVTVKLPDLITKSHLPLDDSIRVWLDQNNHLLPFSYIP  240

Query  241  QKIRTQLENVTLHDGWQQIPGFLILRTTLHGPGWSLVTLYPYGNLHNRILKIILQQIPFT  300
            QKIRTQLENVTLHDGWQQIPGFLILRTTLHGPGWSLVTLYPYGNLHNRILKIILQQIPFT
Sbjct  241  QKIRTQLENVTLHDGWQQIPGFLILRTTLHGPGWSLVTLYPYGNLHNRILKIILQQIPFT  300

Query  301  LTALVLMTSAFCWLLHRSLAKPLWRFVDVINKTATAPLSTRLPAQRLDELDSIAGAFNQL  360
            LTALVLMTSAFCWLLHRSLAKPLWRFVDVINKTATAPLSTRLPAQRLDELDSIAGAFNQL
Sbjct  301  LTALVLMTSAFCWLLHRSLAKPLWRFVDVINKTATAPLSTRLPAQRLDELDSIAGAFNQL  360

Query  361  LDTLQVQYDNLENKVAERTQALneakkraerankrkSIHLTVISHELRTPMNGVLGAIEL  420
            LDTLQVQYDNLENKVAERTQALNEAKKRAERANKRKSIHLTVISHELRTPMNGVLGAIEL
Sbjct  361  LDTLQVQYDNLENKVAERTQALNEAKKRAERANKRKSIHLTVISHELRTPMNGVLGAIEL  420

Query  421  LQTTPLNIEQQGLADTARNCTLSLLAIINNLLDFSRIESGHFTLHMEETALLPLLDQAMQ  480
            LQTTPLNIEQQGLADTARNCTLSLLAIINNLLDFSRIESGHFTLHMEETALLPLLDQAMQ
Sbjct  421  LQTTPLNIEQQGLADTARNCTLSLLAIINNLLDFSRIESGHFTLHMEETALLPLLDQAMQ  480

Query  481  TIQGPAQSKKLSLRTFVGQHVPLYFHTDSIRLRQILVNLLGNAVKFTETGGIRLTVKRHE  540
            TIQGPAQSKKLSLRTFVGQHVPLYFHTDSIRLRQILVNLLGNAVKFTETGGIRLTVKRHE
Sbjct  481  TIQGPAQSKKLSLRTFVGQHVPLYFHTDSIRLRQILVNLLGNAVKFTETGGIRLTVKRHE  540

Query  541  EQLIFLVSDSGKGIEIQQQSQIFTAFYQADTNSQGTGIGLTIASSLAKMMGGNLTLKSVP  600
            EQLIFLVSDSGKGIEIQQQSQIFTAFYQADTNSQGTGIGLTIASSLAKMMGGNLTLKSVP
Sbjct  541  EQLIFLVSDSGKGIEIQQQSQIFTAFYQADTNSQGTGIGLTIASSLAKMMGGNLTLKSVP  600

Query  601  GVGTCVSLVLPLQEYQPPQPIKGTLSAPFCLHRQLACWGIRGEPPHQQNALLNAELLYFP  660
            GVGTCVSLVLPLQEYQPPQPIKGTLSAPFCLHRQLACWGIRGEPPHQQNALLNAELLYF+
Sbjct  601  GVGTCVSLVLPLQEYQPPQPIKGTLSAPFCLHRQLACWGIRGEPPHQQNALLNAELLYFS  660

Query  661  GKLYDLAQQLILCTPNMPVINNLLPPWQLQILLVDDADINRDIIGKMLVSLGQHVTIAAS  720
            GKLYDLAQQLILCTPNMPVINNLLPPWQLQILLVDDADINRDIIGKMLVSLGQHVTIAAS
Sbjct  661  GKLYDLAQQLILCTPNMPVINNLLPPWQLQILLVDDADINRDIIGKMLVSLGQHVTIAAS  720

Query  721  SNEALTLSQQQRFDLVLIDIRMPEIDGIECVQLWHDEPNNLDPDCMFVALSASVATEDIH  780
            SNEALTLSQQQRFDLVLIDIRMPEIDGIECV+LWHDEPNNLDPDCMFVALSASVATEDIH
Sbjct  721  SNEALTLSQQQRFDLVLIDIRMPEIDGIECVRLWHDEPNNLDPDCMFVALSASVATEDIH  780

Query  781  RCKKNGIHHYITKPVTLATLARYISIAAEYQLLRNIELQEQDP  823
            RCKKNGIHHYITKPVTLATLARYISIAAEYQLLRNIELQEQDP
Sbjct  781  RCKKNGIHHYITKPVTLATLARYISIAAEYQLLRNIELQEQDP  823

21) SeHA_C1527 in NC_011083


> U51927|1|G1|1498305|AAC44299.1|Salmonella_enterica_subsp._enterica_serovar_Typhimurium_LT2|-|1..2468|spiR|-|SpiR
Length=823

 Score = 1258 bits (4771),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 820/823 (99%), Positives = 822/823 (99%), Gaps = 0/823 (0%)

Query  1    MNLLNLKNTLQTslvirltflfllttiiiwllsvltAAYISMVQKRQHIIEDLSVLSEMN  60
            MNLLNLKNTLQTSLVIRLTFLFLLTTIIIWLLSVLTAAYISMVQKRQHIIEDLSVLSEMN
Sbjct  1    MNLLNLKNTLQTSLVIRLTFLFLLTTIIIWLLSVLTAAYISMVQKRQHIIEDLSVLSEMN  60

Query  61   IVLSNQRFEEAERDAKNLMYQCSLATEIHHNDIFPEVSRHLSVGPSNCTPTLNGEKHRLF  120
            IVLSNQRFEEAERDAKNLMYQCSLATEIHHNDIFPEVSRHLSVGPSNCTPTLNGEKHRLF
Sbjct  61   IVLSNQRFEEAERDAKNLMYQCSLATEIHHNDIFPEVSRHLSVGPSNCTPTLNGEKHRLF  120

Query  121  LQSSDIDENSFRRDSFILNHKNEISLLSTDNPSDYSTLQPLTRKSFPLYPTHAGFYWSEP  180
            LQSSDIDENSFRRDSFILNHKNEISLLSTDNPSDYSTLQPLTRKSFPLYPTHAGFYWSEP
Sbjct  121  LQSSDIDENSFRRDSFILNHKNEISLLSTDNPSDYSTLQPLTRKSFPLYPTHAGFYWSEP  180

Query  181  EYINGKGWHASVAVADQQGVFFGVTVKLPDLITKSHLPLDDSIRVWLDQNNHLLPFSYIP  240
            EYINGKGWHASVAVADQQGVFF VTVKLPDLITKSHLPLDDSIRVWLDQNNHLLPFSYIP
Sbjct  181  EYINGKGWHASVAVADQQGVFFEVTVKLPDLITKSHLPLDDSIRVWLDQNNHLLPFSYIP  240

Query  241  QKIRTQLENVTLHDGWQQIPGFLILRTTLHGPGWSLVTLYPYGNLHNRILKIILQQIPFT  300
            QKIRTQLENVTLHDGWQQIPGFLILRTTLHGPGWSLVTLYPYGNLHNRILKIILQQIPFT
Sbjct  241  QKIRTQLENVTLHDGWQQIPGFLILRTTLHGPGWSLVTLYPYGNLHNRILKIILQQIPFT  300

Query  301  LTALVLMTSAFCWLLHRSLAKPLWRFVDVINKTATAPLSTRLPAQRLDELDSIAGAFNQL  360
            LTALVLMTSAFCWLLHRSLAKPLWRFVDVINKTATAPLSTRLPAQRLDELDSIAGAFNQL
Sbjct  301  LTALVLMTSAFCWLLHRSLAKPLWRFVDVINKTATAPLSTRLPAQRLDELDSIAGAFNQL  360

Query  361  LDTLQVQYDNLENKVAERTQALneakkraerankrkSIHLTVISHELRTPMNGVLGAIEL  420
            LDTLQVQYDNLENKVAERTQALNEAKKRAERANKRKSIHLTVISHELRTPMNGVLGAIEL
Sbjct  361  LDTLQVQYDNLENKVAERTQALNEAKKRAERANKRKSIHLTVISHELRTPMNGVLGAIEL  420

Query  421  LQTTPLNIEQQGLADTARNCTLSLLAIINNLLDFSRIESGHFTLHMEETALLPLLDQAMQ  480
            LQTTPLNIEQQGLADTARNCTLSLLAIINNLLDFSRIESGHFTLHMEETALLPLLDQAMQ
Sbjct  421  LQTTPLNIEQQGLADTARNCTLSLLAIINNLLDFSRIESGHFTLHMEETALLPLLDQAMQ  480

Query  481  TIQGPAQSKKLSLRTFVGQHVPLYFHTDSIRLRQILVNLLGNAVKFTETGGIRLTVKRHE  540
            TIQGPAQSKKLSLRTFVGQHVPLYFHTDSIRLRQILVNLLGNAVKFTETGGIRLTVKRHE
Sbjct  481  TIQGPAQSKKLSLRTFVGQHVPLYFHTDSIRLRQILVNLLGNAVKFTETGGIRLTVKRHE  540

Query  541  EQLIFLVSDSGKGIEIQQQSQIFTAFYQADTNSQGTGIGLTIASSLAKMMGGNLTLKSVP  600
            EQLIFLVSDSGKGIEIQQQSQIFTAFYQADTNSQGTGIGLTIASSLAKMMGGNLTLKSVP
Sbjct  541  EQLIFLVSDSGKGIEIQQQSQIFTAFYQADTNSQGTGIGLTIASSLAKMMGGNLTLKSVP  600

Query  601  GVGTCVSLVLPLQEYQPPQPIKGTLSAPFCLHRQLACWGIRGEPPHQQNALLNAELLYFP  660
            GVGTCVSLVLPLQEYQPPQPIKGTLSAPFCLHRQLACWGIRGEPPHQQNALLNAELLYF+
Sbjct  601  GVGTCVSLVLPLQEYQPPQPIKGTLSAPFCLHRQLACWGIRGEPPHQQNALLNAELLYFS  660

Query  661  GKLYDLAQQLILCTPNMPVINNLLPPWQLQILLVDDADINRDIIGKMLVSLGQHVTIAAS  720
            GKLYDLAQQLILCTPNMPVINNLLPPWQLQILLVDDADINRDIIGKMLVSLGQHVTIAAS
Sbjct  661  GKLYDLAQQLILCTPNMPVINNLLPPWQLQILLVDDADINRDIIGKMLVSLGQHVTIAAS  720

Query  721  SNEALTLSQQQRFDLVLIDIRMPEIDGIECVQLWHDEPNNLDPDCMFVALSASVATEDIH  780
            SNEALTLSQQQRFDLVLIDIRMPEIDGIECV+LWHDEPNNLDPDCMFVALSASVATEDIH
Sbjct  721  SNEALTLSQQQRFDLVLIDIRMPEIDGIECVRLWHDEPNNLDPDCMFVALSASVATEDIH  780

Query  781  RCKKNGIHHYITKPVTLATLARYISIAAEYQLLRNIELQEQDP  823
            RCKKNGIHHYITKPVTLATLARYISIAAEYQLLRNIELQEQDP
Sbjct  781  RCKKNGIHHYITKPVTLATLARYISIAAEYQLLRNIELQEQDP  823

22) CFSAN001992_04630 in NC_020307


> U51927|1|G1|1498305|AAC44299.1|Salmonella_enterica_subsp._enterica_serovar_Typhimurium_LT2|-|1..2468|spiR|-|SpiR
Length=823

 Score = 1258 bits (4774),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 815/823 (99%), Positives = 821/823 (99%), Gaps = 0/823 (0%)

Query  1    MNLLNLKNTLQTslvirltflfllttiiiwllsvliAAYISMVQKRQHIIEDLSVLSEMN  60
            MNLLNLKNTLQTSLVIRLTFLFLLTTIIIWLLSVL AAYISMVQKRQHIIEDLSVLSEMN
Sbjct  1    MNLLNLKNTLQTSLVIRLTFLFLLTTIIIWLLSVLTAAYISMVQKRQHIIEDLSVLSEMN  60

Query  61   IVLSNQRFEEAERDAKNLMYQCSLATEIHHNDIFPEVSRHLSVGPSNCTPTLNGEKHRIF  120
            IVLSNQRFEEAERDAKNLMYQCSLATEIHHNDIFPEVSRHLSVGPSNCTPTLNGEKHR+F
Sbjct  61   IVLSNQRFEEAERDAKNLMYQCSLATEIHHNDIFPEVSRHLSVGPSNCTPTLNGEKHRLF  120

Query  121  LQSSDIDEKSFRRDSFILNHKNEISLLSTDNPSDYSTLQPLTRKSFPLYPTHAGFYWSEP  180
            LQSSDIDE+SFRRDSFILNHKNEISLLSTDNPSDYSTLQPLTRKSFPLYPTHAGFYWSEP
Sbjct  121  LQSSDIDENSFRRDSFILNHKNEISLLSTDNPSDYSTLQPLTRKSFPLYPTHAGFYWSEP  180

Query  181  EYINGKGWHASVAVADQQGVFFGVTVKLPDLITKSHLPLDDSIRVWLDQNNHLLPFSYIP  240
            EYINGKGWHASVAVADQQGVFF VTVKLPDLITKSHLPLDDSIRVWLDQNNHLLPFSYIP
Sbjct  181  EYINGKGWHASVAVADQQGVFFEVTVKLPDLITKSHLPLDDSIRVWLDQNNHLLPFSYIP  240

Query  241  QKIRTQLENVTLHDGWQQIPGFLILRTTLHGPGWSLVTLYPYGNLHNRILKIILQQIPFT  300
            QKIRTQLENVTLHDGWQQIPGFLILRTTLHGPGWSLVTLYPYGNLHNRILKIILQQIPFT
Sbjct  241  QKIRTQLENVTLHDGWQQIPGFLILRTTLHGPGWSLVTLYPYGNLHNRILKIILQQIPFT  300

Query  301  LTALVLMTSAFCWLLHRSLAKPLWRFVDVINKTATAPLSTRLPAQRLDELDSIAGAFNQL  360
            LTALVLMTSAFCWLLHRSLAKPLWRFVDVINKTATAPLSTRLPAQRLDELDSIAGAFNQL
Sbjct  301  LTALVLMTSAFCWLLHRSLAKPLWRFVDVINKTATAPLSTRLPAQRLDELDSIAGAFNQL  360

Query  361  LDTLQVQYDNLENKVAERTQALNEAKKRAEQANKRKSIHLTVISHELRTPMNGVLGAIEL  420
            LDTLQVQYDNLENKVAERTQALNEAKKRAE+ANKRKSIHLTVISHELRTPMNGVLGAIEL
Sbjct  361  LDTLQVQYDNLENKVAERTQALNEAKKRAERANKRKSIHLTVISHELRTPMNGVLGAIEL  420

Query  421  LQTTPLNIEQQGLADTARNCTLSLLAIINNLLDFSRIESGHFTLHMEETALLPLLDQAMQ  480
            LQTTPLNIEQQGLADTARNCTLSLLAIINNLLDFSRIESGHFTLHMEETALLPLLDQAMQ
Sbjct  421  LQTTPLNIEQQGLADTARNCTLSLLAIINNLLDFSRIESGHFTLHMEETALLPLLDQAMQ  480

Query  481  TIQGPAQSKKLSLRTFVGQHVPLYFHTDSIRLRQILVNLLGNAVKFTETGGIRLTVKRHE  540
            TIQGPAQSKKLSLRTFVGQHVPLYFHTDSIRLRQILVNLLGNAVKFTETGGIRLTVKRHE
Sbjct  481  TIQGPAQSKKLSLRTFVGQHVPLYFHTDSIRLRQILVNLLGNAVKFTETGGIRLTVKRHE  540

Query  541  EQLIFLVSDSGKGIEIQQQSQIFTAFYQADTNSQGTGIGLTIASSLAKMMGGNLTLKSVP  600
            EQLIFLVSDSGKGIEIQQQSQIFTAFYQADTNSQGTGIGLTIASSLAKMMGGNLTLKSVP
Sbjct  541  EQLIFLVSDSGKGIEIQQQSQIFTAFYQADTNSQGTGIGLTIASSLAKMMGGNLTLKSVP  600

Query  601  GVGTCVSLVLPLQEYQPPQPIKGTLSAPFCLHRQLACWGIRGEPPHQQNALLNAELLYFP  660
            GVGTCVSLVLPLQEYQPPQPIKGTLSAPFCLHRQLACWGIRGEPPHQQNALLNAELLYF+
Sbjct  601  GVGTCVSLVLPLQEYQPPQPIKGTLSAPFCLHRQLACWGIRGEPPHQQNALLNAELLYFS  660

Query  661  GKLYDLAQQLILCTpnipvinnllppWQLQILLVDDADINRDIIGKMLVSLGQHVTIAAS  720
            GKLYDLAQQLILCTPN+PVINNLLPPWQLQILLVDDADINRDIIGKMLVSLGQHVTIAAS
Sbjct  661  GKLYDLAQQLILCTPNMPVINNLLPPWQLQILLVDDADINRDIIGKMLVSLGQHVTIAAS  720

Query  721  SNEALTLSQQQRFDLVLIDIRMPEIDGIECVQLWHDEPNNLDPDCMFVALSASVATEDIH  780
            SNEALTLSQQQRFDLVLIDIRMPEIDGIECV+LWHDEPNNLDPDCMFVALSASVATEDIH
Sbjct  721  SNEALTLSQQQRFDLVLIDIRMPEIDGIECVRLWHDEPNNLDPDCMFVALSASVATEDIH  780

Query  781  RCKKNGIHHYITKPVTLATLARYISIAAEYQLLRNIELQEQDP  823
            RCKKNGIHHYITKPVTLATLARYISIAAEYQLLRNIELQEQDP
Sbjct  781  RCKKNGIHHYITKPVTLATLARYISIAAEYQLLRNIELQEQDP  823

23) SeSA_A1490 in NC_011094


> U51927|1|G1|1498305|AAC44299.1|Salmonella_enterica_subsp._enterica_serovar_Typhimurium_LT2|-|1..2468|spiR|-|SpiR
Length=823

 Score = 1258 bits (4774),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 815/823 (99%), Positives = 821/823 (99%), Gaps = 0/823 (0%)

Query  1    MNLLNLKNTLQTslvirltflfllttiiiwllsvliAAYISMVQKRQHIIEDLSVLSEMN  60
            MNLLNLKNTLQTSLVIRLTFLFLLTTIIIWLLSVL AAYISMVQKRQHIIEDLSVLSEMN
Sbjct  1    MNLLNLKNTLQTSLVIRLTFLFLLTTIIIWLLSVLTAAYISMVQKRQHIIEDLSVLSEMN  60

Query  61   IVLSNQRFEEAERDAKNLMYQCSLATEIHHNDIFPEVSRHLSVGPSNCTPTLNGEKHRIF  120
            IVLSNQRFEEAERDAKNLMYQCSLATEIHHNDIFPEVSRHLSVGPSNCTPTLNGEKHR+F
Sbjct  61   IVLSNQRFEEAERDAKNLMYQCSLATEIHHNDIFPEVSRHLSVGPSNCTPTLNGEKHRLF  120

Query  121  LQSSDIDEKSFRRDSFILNHKNEISLLSTDNPSDYSTLQPLTRKSFPLYPTHAGFYWSEP  180
            LQSSDIDE+SFRRDSFILNHKNEISLLSTDNPSDYSTLQPLTRKSFPLYPTHAGFYWSEP
Sbjct  121  LQSSDIDENSFRRDSFILNHKNEISLLSTDNPSDYSTLQPLTRKSFPLYPTHAGFYWSEP  180

Query  181  EYINGKGWHASVAVADQQGVFFGVTVKLPDLITKSHLPLDDSIRVWLDQNNHLLPFSYIP  240
            EYINGKGWHASVAVADQQGVFF VTVKLPDLITKSHLPLDDSIRVWLDQNNHLLPFSYIP
Sbjct  181  EYINGKGWHASVAVADQQGVFFEVTVKLPDLITKSHLPLDDSIRVWLDQNNHLLPFSYIP  240

Query  241  QKIRTQLENVTLHDGWQQIPGFLILRTTLHGPGWSLVTLYPYGNLHNRILKIILQQIPFT  300
            QKIRTQLENVTLHDGWQQIPGFLILRTTLHGPGWSLVTLYPYGNLHNRILKIILQQIPFT
Sbjct  241  QKIRTQLENVTLHDGWQQIPGFLILRTTLHGPGWSLVTLYPYGNLHNRILKIILQQIPFT  300

Query  301  LTALVLMTSAFCWLLHRSLAKPLWRFVDVINKTATAPLSTRLPAQRLDELDSIAGAFNQL  360
            LTALVLMTSAFCWLLHRSLAKPLWRFVDVINKTATAPLSTRLPAQRLDELDSIAGAFNQL
Sbjct  301  LTALVLMTSAFCWLLHRSLAKPLWRFVDVINKTATAPLSTRLPAQRLDELDSIAGAFNQL  360

Query  361  LDTLQVQYDNLENKVAERTQALNEAKKRAEQANKRKSIHLTVISHELRTPMNGVLGAIEL  420
            LDTLQVQYDNLENKVAERTQALNEAKKRAE+ANKRKSIHLTVISHELRTPMNGVLGAIEL
Sbjct  361  LDTLQVQYDNLENKVAERTQALNEAKKRAERANKRKSIHLTVISHELRTPMNGVLGAIEL  420

Query  421  LQTTPLNIEQQGLADTARNCTLSLLAIINNLLDFSRIESGHFTLHMEETALLPLLDQAMQ  480
            LQTTPLNIEQQGLADTARNCTLSLLAIINNLLDFSRIESGHFTLHMEETALLPLLDQAMQ
Sbjct  421  LQTTPLNIEQQGLADTARNCTLSLLAIINNLLDFSRIESGHFTLHMEETALLPLLDQAMQ  480

Query  481  TIQGPAQSKKLSLRTFVGQHVPLYFHTDSIRLRQILVNLLGNAVKFTETGGIRLTVKRHE  540
            TIQGPAQSKKLSLRTFVGQHVPLYFHTDSIRLRQILVNLLGNAVKFTETGGIRLTVKRHE
Sbjct  481  TIQGPAQSKKLSLRTFVGQHVPLYFHTDSIRLRQILVNLLGNAVKFTETGGIRLTVKRHE  540

Query  541  EQLIFLVSDSGKGIEIQQQSQIFTAFYQADTNSQGTGIGLTIASSLAKMMGGNLTLKSVP  600
            EQLIFLVSDSGKGIEIQQQSQIFTAFYQADTNSQGTGIGLTIASSLAKMMGGNLTLKSVP
Sbjct  541  EQLIFLVSDSGKGIEIQQQSQIFTAFYQADTNSQGTGIGLTIASSLAKMMGGNLTLKSVP  600

Query  601  GVGTCVSLVLPLQEYQPPQPIKGTLSAPFCLHRQLACWGIRGEPPHQQNALLNAELLYFP  660
            GVGTCVSLVLPLQEYQPPQPIKGTLSAPFCLHRQLACWGIRGEPPHQQNALLNAELLYF+
Sbjct  601  GVGTCVSLVLPLQEYQPPQPIKGTLSAPFCLHRQLACWGIRGEPPHQQNALLNAELLYFS  660

Query  661  GKLYDLAQQLILCTpnipvinnllppWQLQILLVDDADINRDIIGKMLVSLGQHVTIAAS  720
            GKLYDLAQQLILCTPN+PVINNLLPPWQLQILLVDDADINRDIIGKMLVSLGQHVTIAAS
Sbjct  661  GKLYDLAQQLILCTPNMPVINNLLPPWQLQILLVDDADINRDIIGKMLVSLGQHVTIAAS  720

Query  721  SNEALTLSQQQRFDLVLIDIRMPEIDGIECVQLWHDEPNNLDPDCMFVALSASVATEDIH  780
            SNEALTLSQQQRFDLVLIDIRMPEIDGIECV+LWHDEPNNLDPDCMFVALSASVATEDIH
Sbjct  721  SNEALTLSQQQRFDLVLIDIRMPEIDGIECVRLWHDEPNNLDPDCMFVALSASVATEDIH  780

Query  781  RCKKNGIHHYITKPVTLATLARYISIAAEYQLLRNIELQEQDP  823
            RCKKNGIHHYITKPVTLATLARYISIAAEYQLLRNIELQEQDP
Sbjct  781  RCKKNGIHHYITKPVTLATLARYISIAAEYQLLRNIELQEQDP  823

24) SNSL254_A1505 in NC_011080


> U51927|1|G1|1498305|AAC44299.1|Salmonella_enterica_subsp._enterica_serovar_Typhimurium_LT2|-|1..2468|spiR|-|SpiR
Length=823

 Score = 1257 bits (4769),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 818/823 (99%), Positives = 822/823 (99%), Gaps = 0/823 (0%)

Query  1    MNLLNLKNTLQTslvirltflfllttiiiwllsvltAAYISMVQKRQHIIEDLSVLSEMN  60
            MNLLNLKNTLQTSLVIRLTFLFLLTTIIIWLLSVLTAAYISMVQKRQHIIEDLSVLSEMN
Sbjct  1    MNLLNLKNTLQTSLVIRLTFLFLLTTIIIWLLSVLTAAYISMVQKRQHIIEDLSVLSEMN  60

Query  61   IVLSNQRFEEAERDAKNLMYQCSLATEIHHNDIFPEVSRHLSVGPSNCTPTLNGEKHRLF  120
            IVLSNQRFEEAERDAKNLMYQCSLATEIHHNDIFPEVSRHLSVGPSNCTPTLNGEKHRLF
Sbjct  61   IVLSNQRFEEAERDAKNLMYQCSLATEIHHNDIFPEVSRHLSVGPSNCTPTLNGEKHRLF  120

Query  121  LQSSDIDEKSFRRDSFILNHKNEISLLSTDNPSDYSTLQPLTRKSFPLYPTHAGFYWSEP  180
            LQSSDIDE+SFRRDSFILNHKNEISLLSTDNPSDYSTLQPLTRKSFPLYPTHAGFYWSEP
Sbjct  121  LQSSDIDENSFRRDSFILNHKNEISLLSTDNPSDYSTLQPLTRKSFPLYPTHAGFYWSEP  180

Query  181  EYINGKGWHASVAVADQQGVFFGVTVKLPDLITKSHLPLDDSIRVWLDQNNHLLPFSYIP  240
            EYINGKGWHASVAVADQQGVFF VTVKLPDLITKSHLPLDDSIRVWLDQNNHLLPFSYIP
Sbjct  181  EYINGKGWHASVAVADQQGVFFEVTVKLPDLITKSHLPLDDSIRVWLDQNNHLLPFSYIP  240

Query  241  QKIRTQLENVTLHDGWQQIPGFLILRTTLHGPGWSLVTLYPYGNLHNRILKIILQQIPFT  300
            QKIRTQLENVTLHDGWQQIPGFLILRTTLHGPGWSLVTLYPYGNLHNRILKIILQQIPFT
Sbjct  241  QKIRTQLENVTLHDGWQQIPGFLILRTTLHGPGWSLVTLYPYGNLHNRILKIILQQIPFT  300

Query  301  LTALVLMTSAFCWLLHRSLAKPLWRFVDVINKTATAPLSTRLPAQRLDELDSIAGAFNQL  360
            LTALVLMTSAFCWLLHRSLAKPLWRFVDVINKTATAPLSTRLPAQRLDELDSIAGAFNQL
Sbjct  301  LTALVLMTSAFCWLLHRSLAKPLWRFVDVINKTATAPLSTRLPAQRLDELDSIAGAFNQL  360

Query  361  LDTLQVQYDNLENKVAERTQALneakkraerankrkSIHLTVISHELRTPMNGVLGAIEL  420
            LDTLQVQYDNLENKVAERTQALNEAKKRAERANKRKSIHLTVISHELRTPMNGVLGAIEL
Sbjct  361  LDTLQVQYDNLENKVAERTQALNEAKKRAERANKRKSIHLTVISHELRTPMNGVLGAIEL  420

Query  421  LQTTPLNIEQQGLADTARNCTLSLLAIINNLLDFSRIESGHFTLHMEETALLPLLDQAMQ  480
            LQTTPLNIEQQGLADTARNCTLSLLAIINNLLDFSRIESGHFTLHMEETALLPLLDQAMQ
Sbjct  421  LQTTPLNIEQQGLADTARNCTLSLLAIINNLLDFSRIESGHFTLHMEETALLPLLDQAMQ  480

Query  481  TIQGPAQSKKLSLRTFVGQHVPLYFHTDSIRLRQILVNLLGNAVKFTETGGIRLTVKRHE  540
            TIQGPAQSKKLSLRTFVGQHVPLYFHTDSIRLRQILVNLLGNAVKFTETGGIRLTVKRHE
Sbjct  481  TIQGPAQSKKLSLRTFVGQHVPLYFHTDSIRLRQILVNLLGNAVKFTETGGIRLTVKRHE  540

Query  541  EQLIFLVSDSGKGIEIQQQSQIFTAFYQADTNSQGTGIGLTIASSLAKMMGGNLTLKSVP  600
            EQLIFLVSDSGKGIEIQQQSQIFTAFYQADTNSQGTGIGLTIASSLAKMMGGNLTLKSVP
Sbjct  541  EQLIFLVSDSGKGIEIQQQSQIFTAFYQADTNSQGTGIGLTIASSLAKMMGGNLTLKSVP  600

Query  601  GVGTCVSLVLPLQEYQPPQPIKGTLSAPFCLHRQLACWGIRGEPPHQQNALLNAELLYFP  660
            GVGTCVSLVLPLQEYQPPQPIKGTLSAPFCLHRQLACWGIRGEPPHQQNALLNAELLYF+
Sbjct  601  GVGTCVSLVLPLQEYQPPQPIKGTLSAPFCLHRQLACWGIRGEPPHQQNALLNAELLYFS  660

Query  661  GKLYDLAQQLILCTPNMPVINNLLPPWQLQILLVDDADINRDIIGKMLVSLGQHVTIAAS  720
            GKLYDLAQQLILCTPNMPVINNLLPPWQLQILLVDDADINRDIIGKMLVSLGQHVTIAAS
Sbjct  661  GKLYDLAQQLILCTPNMPVINNLLPPWQLQILLVDDADINRDIIGKMLVSLGQHVTIAAS  720

Query  721  SNEALTLSQQQRFDLVLIDIRMPEIDGIECVQLWHDEPNNLDPDCMFVALSASVAAEDIH  780
            SNEALTLSQQQRFDLVLIDIRMPEIDGIECV+LWHDEPNNLDPDCMFVALSASVA+EDIH
Sbjct  721  SNEALTLSQQQRFDLVLIDIRMPEIDGIECVRLWHDEPNNLDPDCMFVALSASVATEDIH  780

Query  781  RCKKNGIHHYITKPVTLATLARYISIAAEYQLLRNIELQEQDP  823
            RCKKNGIHHYITKPVTLATLARYISIAAEYQLLRNIELQEQDP
Sbjct  781  RCKKNGIHHYITKPVTLATLARYISIAAEYQLLRNIELQEQDP  823

25) SN31241_24640 in NC_021902


> U51927|1|G1|1498305|AAC44299.1|Salmonella_enterica_subsp._enterica_serovar_Typhimurium_LT2|-|1..2468|spiR|-|SpiR
Length=823

 Score = 1257 bits (4769),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 818/823 (99%), Positives = 822/823 (99%), Gaps = 0/823 (0%)

Query  1    MNLLNLKNTLQTslvirltflfllttiiiwllsvltAAYISMVQKRQHIIEDLSVLSEMN  60
            MNLLNLKNTLQTSLVIRLTFLFLLTTIIIWLLSVLTAAYISMVQKRQHIIEDLSVLSEMN
Sbjct  1    MNLLNLKNTLQTSLVIRLTFLFLLTTIIIWLLSVLTAAYISMVQKRQHIIEDLSVLSEMN  60

Query  61   IVLSNQRFEEAERDAKNLMYQCSLATEIHHNDIFPEVSRHLSVGPSNCTPTLNGEKHRLF  120
            IVLSNQRFEEAERDAKNLMYQCSLATEIHHNDIFPEVSRHLSVGPSNCTPTLNGEKHRLF
Sbjct  61   IVLSNQRFEEAERDAKNLMYQCSLATEIHHNDIFPEVSRHLSVGPSNCTPTLNGEKHRLF  120

Query  121  LQSSDIDEKSFRRDSFILNHKNEISLLSTDNPSDYSTLQPLTRKSFPLYPTHAGFYWSEP  180
            LQSSDIDE+SFRRDSFILNHKNEISLLSTDNPSDYSTLQPLTRKSFPLYPTHAGFYWSEP
Sbjct  121  LQSSDIDENSFRRDSFILNHKNEISLLSTDNPSDYSTLQPLTRKSFPLYPTHAGFYWSEP  180

Query  181  EYINGKGWHASVAVADQQGVFFGVTVKLPDLITKSHLPLDDSIRVWLDQNNHLLPFSYIP  240
            EYINGKGWHASVAVADQQGVFF VTVKLPDLITKSHLPLDDSIRVWLDQNNHLLPFSYIP
Sbjct  181  EYINGKGWHASVAVADQQGVFFEVTVKLPDLITKSHLPLDDSIRVWLDQNNHLLPFSYIP  240

Query  241  QKIRTQLENVTLHDGWQQIPGFLILRTTLHGPGWSLVTLYPYGNLHNRILKIILQQIPFT  300
            QKIRTQLENVTLHDGWQQIPGFLILRTTLHGPGWSLVTLYPYGNLHNRILKIILQQIPFT
Sbjct  241  QKIRTQLENVTLHDGWQQIPGFLILRTTLHGPGWSLVTLYPYGNLHNRILKIILQQIPFT  300

Query  301  LTALVLMTSAFCWLLHRSLAKPLWRFVDVINKTATAPLSTRLPAQRLDELDSIAGAFNQL  360
            LTALVLMTSAFCWLLHRSLAKPLWRFVDVINKTATAPLSTRLPAQRLDELDSIAGAFNQL
Sbjct  301  LTALVLMTSAFCWLLHRSLAKPLWRFVDVINKTATAPLSTRLPAQRLDELDSIAGAFNQL  360

Query  361  LDTLQVQYDNLENKVAERTQALneakkraerankrkSIHLTVISHELRTPMNGVLGAIEL  420
            LDTLQVQYDNLENKVAERTQALNEAKKRAERANKRKSIHLTVISHELRTPMNGVLGAIEL
Sbjct  361  LDTLQVQYDNLENKVAERTQALNEAKKRAERANKRKSIHLTVISHELRTPMNGVLGAIEL  420

Query  421  LQTTPLNIEQQGLADTARNCTLSLLAIINNLLDFSRIESGHFTLHMEETALLPLLDQAMQ  480
            LQTTPLNIEQQGLADTARNCTLSLLAIINNLLDFSRIESGHFTLHMEETALLPLLDQAMQ
Sbjct  421  LQTTPLNIEQQGLADTARNCTLSLLAIINNLLDFSRIESGHFTLHMEETALLPLLDQAMQ  480

Query  481  TIQGPAQSKKLSLRTFVGQHVPLYFHTDSIRLRQILVNLLGNAVKFTETGGIRLTVKRHE  540
            TIQGPAQSKKLSLRTFVGQHVPLYFHTDSIRLRQILVNLLGNAVKFTETGGIRLTVKRHE
Sbjct  481  TIQGPAQSKKLSLRTFVGQHVPLYFHTDSIRLRQILVNLLGNAVKFTETGGIRLTVKRHE  540

Query  541  EQLIFLVSDSGKGIEIQQQSQIFTAFYQADTNSQGTGIGLTIASSLAKMMGGNLTLKSVP  600
            EQLIFLVSDSGKGIEIQQQSQIFTAFYQADTNSQGTGIGLTIASSLAKMMGGNLTLKSVP
Sbjct  541  EQLIFLVSDSGKGIEIQQQSQIFTAFYQADTNSQGTGIGLTIASSLAKMMGGNLTLKSVP  600

Query  601  GVGTCVSLVLPLQEYQPPQPIKGTLSAPFCLHRQLACWGIRGEPPHQQNALLNAELLYFP  660
            GVGTCVSLVLPLQEYQPPQPIKGTLSAPFCLHRQLACWGIRGEPPHQQNALLNAELLYF+
Sbjct  601  GVGTCVSLVLPLQEYQPPQPIKGTLSAPFCLHRQLACWGIRGEPPHQQNALLNAELLYFS  660

Query  661  GKLYDLAQQLILCTPNMPVINNLLPPWQLQILLVDDADINRDIIGKMLVSLGQHVTIAAS  720
            GKLYDLAQQLILCTPNMPVINNLLPPWQLQILLVDDADINRDIIGKMLVSLGQHVTIAAS
Sbjct  661  GKLYDLAQQLILCTPNMPVINNLLPPWQLQILLVDDADINRDIIGKMLVSLGQHVTIAAS  720

Query  721  SNEALTLSQQQRFDLVLIDIRMPEIDGIECVQLWHDEPNNLDPDCMFVALSASVAAEDIH  780
            SNEALTLSQQQRFDLVLIDIRMPEIDGIECV+LWHDEPNNLDPDCMFVALSASVA+EDIH
Sbjct  721  SNEALTLSQQQRFDLVLIDIRMPEIDGIECVRLWHDEPNNLDPDCMFVALSASVATEDIH  780

Query  781  RCKKNGIHHYITKPVTLATLARYISIAAEYQLLRNIELQEQDP  823
            RCKKNGIHHYITKPVTLATLARYISIAAEYQLLRNIELQEQDP
Sbjct  781  RCKKNGIHHYITKPVTLATLARYISIAAEYQLLRNIELQEQDP  823

26) SEEB0189_12575 in NC_021844


> U51927|1|G1|1498305|AAC44299.1|Salmonella_enterica_subsp._enterica_serovar_Typhimurium_LT2|-|1..2468|spiR|-|SpiR
Length=823

 Score = 1251 bits (4747),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 815/823 (99%), Positives = 820/823 (99%), Gaps = 0/823 (0%)

Query  1    MNLLNLKNTLQTslvirltflfllttiiiwllsvltAAYISMVQKRQHIIDDLSVLSEMN  60
            MNLLNLKNTLQTSLVIRLTFLFLLTTIIIWLLSVLTAAYISMVQKRQHII+DLSVLSEMN
Sbjct  1    MNLLNLKNTLQTSLVIRLTFLFLLTTIIIWLLSVLTAAYISMVQKRQHIIEDLSVLSEMN  60

Query  61   IVLSNQRFEEAERDAKNLMYQCSLATEIHHNDIFPEVSRHLSVGPSNCTPTLNGEKHRLF  120
            IVLSNQRFEEAERDAKNLMYQCSLATEIHHNDIFPEVSRHLSVGPSNCTPTLNGEKHRLF
Sbjct  61   IVLSNQRFEEAERDAKNLMYQCSLATEIHHNDIFPEVSRHLSVGPSNCTPTLNGEKHRLF  120

Query  121  LQSSDIDEKSFRRDSFILNHKNEISLLSTDNPSDYSTLQPLTRKSFPLYPTHAGFYWSEP  180
            LQSSDIDE+SFRRDSFILNHKNEISLLSTDNPSDYSTLQPLTRKSFPLYPTHAGFYWSEP
Sbjct  121  LQSSDIDENSFRRDSFILNHKNEISLLSTDNPSDYSTLQPLTRKSFPLYPTHAGFYWSEP  180

Query  181  EYINGKGWHASVAVADQQGVFFGVTVKLPDLITKSHLPLDDSIRVWLDQNNHLLPFSYIP  240
            EYINGKGWHASVAVADQQGVFF VTVKLPDLITKSHLPLDDSIRVWLDQNNHLLPFSYIP
Sbjct  181  EYINGKGWHASVAVADQQGVFFEVTVKLPDLITKSHLPLDDSIRVWLDQNNHLLPFSYIP  240

Query  241  QKIRTQLENVTLHDGWQQIPGFLILRTTLHGPGWSLVTLYPYGNLHNRILKIILQQIPFT  300
            QKIRTQLENVTLHDGWQQIPGFLILRTTLHGPGWSLVTLYPYGNLHNRILKIILQQIPFT
Sbjct  241  QKIRTQLENVTLHDGWQQIPGFLILRTTLHGPGWSLVTLYPYGNLHNRILKIILQQIPFT  300

Query  301  LTALVLMTSAFCWLLHRSLAKPLWRFVDVINKTATAPLSTRLPAQRLDELDSIAGAFNQL  360
            LTALVLMTSAFCWLLHRSLAKPLWRFVDVINKTATAPLSTRLPAQRLDELDSIAGAFNQL
Sbjct  301  LTALVLMTSAFCWLLHRSLAKPLWRFVDVINKTATAPLSTRLPAQRLDELDSIAGAFNQL  360

Query  361  LDTLQVQYDNLENKVAERTQALneakkraerankrkSIHLTVISHELRTPMNGVLGAIEL  420
            LDTLQVQYDNLENKVAERTQALNEAKKRAERANKRKSIHLTVISHELRTPMNGVLGAIEL
Sbjct  361  LDTLQVQYDNLENKVAERTQALNEAKKRAERANKRKSIHLTVISHELRTPMNGVLGAIEL  420

Query  421  LQTTPLNIEQQGLADTARNCTLSLLAIINNLLDFSRIESGHFTLHMEETALLPLLDQAMQ  480
            LQTTPLNIEQQGLADTARNCTLSLLAIINNLLDFSRIESGHFTLHMEETALLPLLDQAMQ
Sbjct  421  LQTTPLNIEQQGLADTARNCTLSLLAIINNLLDFSRIESGHFTLHMEETALLPLLDQAMQ  480

Query  481  TIQGPAQSKKLSLRTFVGQHVPLYFHTDSIRLRQILVNLLGNAVKFTETGGIRLTVKRHE  540
            TIQGPAQSKKLSLRTFVGQHVPLYFHTDSIRLRQILVNLLGNAVKFTETGGIRLTVKRHE
Sbjct  481  TIQGPAQSKKLSLRTFVGQHVPLYFHTDSIRLRQILVNLLGNAVKFTETGGIRLTVKRHE  540

Query  541  EQLIFLVSDSGKGIEIQQQSQIFTAFYQADTNSQGTGIGLTIASSLAKMMGGNLTLKSVP  600
            EQLIFLVSDSGKGIEIQQQSQIFTAFYQADTNSQGTGIGLTIASSLAKMMGGNLTLKSVP
Sbjct  541  EQLIFLVSDSGKGIEIQQQSQIFTAFYQADTNSQGTGIGLTIASSLAKMMGGNLTLKSVP  600

Query  601  GVGTCVSLVLPLQEYQPPQPIKGTLSAPFCLHRQLACWGIRGAPPHQQNALLNAELLYFP  660
            GVGTCVSLVLPLQEYQPPQPIKGTLSAPFCLHRQLACWGIRG PPHQQNALLNAELLYF+
Sbjct  601  GVGTCVSLVLPLQEYQPPQPIKGTLSAPFCLHRQLACWGIRGEPPHQQNALLNAELLYFS  660

Query  661  GKLYDLAQQLILRTPNMPVINNLLPPWQLQILLVDDADINRDIIGKMLVSLGQHVTIAAS  720
            GKLYDLAQQLIL TPNMPVINNLLPPWQLQILLVDDADINRDIIGKMLVSLGQHVTIAAS
Sbjct  661  GKLYDLAQQLILCTPNMPVINNLLPPWQLQILLVDDADINRDIIGKMLVSLGQHVTIAAS  720

Query  721  SNEALTLSQQQRFDLVLIDIRMPEIDGIECVQLWHDEPNNLDPDCMFVALSASVAAEDIH  780
            SNEALTLSQQQRFDLVLIDIRMPEIDGIECV+LWHDEPNNLDPDCMFVALSASVA+EDIH
Sbjct  721  SNEALTLSQQQRFDLVLIDIRMPEIDGIECVRLWHDEPNNLDPDCMFVALSASVATEDIH  780

Query  781  RCKKNGIHHYITKPVTLATLARYISIAAEYQLLRNIELQEQDP  823
            RCKKNGIHHYITKPVTLATLARYISIAAEYQLLRNIELQEQDP
Sbjct  781  RCKKNGIHHYITKPVTLATLARYISIAAEYQLLRNIELQEQDP  823

27) STBHUCCB_13520 in NC_016832


> U51927|1|G1|1498305|AAC44299.1|Salmonella_enterica_subsp._enterica_serovar_Typhimurium_LT2|-|1..2468|spiR|-|SpiR
Length=823

 Score = 1236 bits (4688),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 808/823 (99%), Positives = 817/823 (99%), Gaps = 0/823 (0%)

Query  1    MNLLNLKNTLQTslvirltflfllttiiiwllsvitAAYISMVQKRQHIIEDLSALSEMN  60
            MNLLNLKNTLQTSLVIRLTFLFLLTTIIIWLLSV+TAAYISMVQKRQHIIEDLS LSEMN
Sbjct  1    MNLLNLKNTLQTSLVIRLTFLFLLTTIIIWLLSVLTAAYISMVQKRQHIIEDLSVLSEMN  60

Query  61   IVLSNQRFEEAERDAKNLMYQCSLATEIHHNDIFPEVSRHLSVGPSNCTPTLNGEKHRLF  120
            IVLSNQRFEEAERDAKNLMYQCSLATEIHHNDIFPEVSRHLSVGPSNCTPTLNGEKHRLF
Sbjct  61   IVLSNQRFEEAERDAKNLMYQCSLATEIHHNDIFPEVSRHLSVGPSNCTPTLNGEKHRLF  120

Query  121  LQSSDIDEKSFRRDSFILNHKNEISLLSTDNPSDYSTLQLLTRKSFPLYPTHAGFYWSEP  180
            LQSSDIDE+SFRRDSFILNHKNEISLLSTDNPSDYSTLQ LTRKSFPLYPTHAGFYWSEP
Sbjct  121  LQSSDIDENSFRRDSFILNHKNEISLLSTDNPSDYSTLQPLTRKSFPLYPTHAGFYWSEP  180

Query  181  EYINGKGWHASVAVADQQGVFFGVMVKLPDLISKSHLPLDDSIRVWLDQNNHLLPFSYIP  240
            EYINGKGWHASVAVADQQGVFF V VKLPDLI+KSHLPLDDSIRVWLDQNNHLLPFSYIP
Sbjct  181  EYINGKGWHASVAVADQQGVFFEVTVKLPDLITKSHLPLDDSIRVWLDQNNHLLPFSYIP  240

Query  241  QKIRTQLENVTLHDGWQQIPGFLILRTTLHGPGWSLVTLYPYGNLHNRILKTILQQIPFT  300
            QKIRTQLENVTLHDGWQQIPGFLILRTTLHGPGWSLVTLYPYGNLHNRILK ILQQIPFT
Sbjct  241  QKIRTQLENVTLHDGWQQIPGFLILRTTLHGPGWSLVTLYPYGNLHNRILKIILQQIPFT  300

Query  301  LTALVLMTSAFCWLLHRSLAKPLWRFVDIINKTATAPLSTRLPAQRLDELDSIAGAFNQL  360
            LTALVLMTSAFCWLLHRSLAKPLWRFVD+INKTATAPLSTRLPAQRLDELDSIAGAFNQL
Sbjct  301  LTALVLMTSAFCWLLHRSLAKPLWRFVDVINKTATAPLSTRLPAQRLDELDSIAGAFNQL  360

Query  361  LDTLQVQYDNLENKVAERTQALNEAKKRAEQANKRKSIHLTVISHELRTPMNGVLGAIEL  420
            LDTLQVQYDNLENKVAERTQALNEAKKRAE+ANKRKSIHLTVISHELRTPMNGVLGAIEL
Sbjct  361  LDTLQVQYDNLENKVAERTQALNEAKKRAERANKRKSIHLTVISHELRTPMNGVLGAIEL  420

Query  421  LQTTPLNIEQQGLADTARNCTLSLLAIINNLLDFSRIESGHFTLHMEETALLPLLDQAMQ  480
            LQTTPLNIEQQGLADTARNCTLSLLAIINNLLDFSRIESGHFTLHMEETALLPLLDQAMQ
Sbjct  421  LQTTPLNIEQQGLADTARNCTLSLLAIINNLLDFSRIESGHFTLHMEETALLPLLDQAMQ  480

Query  481  TIQGPAQSKKLSLRTFVGQHVPLYFHTDSIRLRQILVNLLGNAVKFTETGGIRLTVKRHE  540
            TIQGPAQSKKLSLRTFVGQHVPLYFHTDSIRLRQILVNLLGNAVKFTETGGIRLTVKRHE
Sbjct  481  TIQGPAQSKKLSLRTFVGQHVPLYFHTDSIRLRQILVNLLGNAVKFTETGGIRLTVKRHE  540

Query  541  EQLIFLVSDSGKGIEIQQQSQIFTAFYQADTNSQGTGIGLTIASSLAKMMGGNLTLKSVP  600
            EQLIFLVSDSGKGIEIQQQSQIFTAFYQADTNSQGTGIGLTIASSLAKMMGGNLTLKSVP
Sbjct  541  EQLIFLVSDSGKGIEIQQQSQIFTAFYQADTNSQGTGIGLTIASSLAKMMGGNLTLKSVP  600

Query  601  GVGTCVSLVLPLQEYQPPQQIKGTLSAPFCLHRQLACWGIRGEPPHQQNALLNAELLYFP  660
            GVGTCVSLVLPLQEYQPPQ IKGTLSAPFCLHRQLACWGIRGEPPHQQNALLNAELLYF+
Sbjct  601  GVGTCVSLVLPLQEYQPPQPIKGTLSAPFCLHRQLACWGIRGEPPHQQNALLNAELLYFS  660

Query  661  GKLYDLAQQlilctpnipiinnllppWQLQILLVDDADINRDIIGKMLVSLGQHVTIAAS  720
            GKLYDLAQQLILCTPN+P+INNLLPPWQLQILLVDDADINRDIIGKMLVSLGQHVTIAAS
Sbjct  661  GKLYDLAQQLILCTPNMPVINNLLPPWQLQILLVDDADINRDIIGKMLVSLGQHVTIAAS  720

Query  721  SNEALTLSQQQRFDLVLIDIRMPEIDGIECVQLWHDEPNNLDPDCMFVALSASVATEDIH  780
            SNEALTLSQQQRFDLVLIDIRMPEIDGIECV+LWHDEPNNLDPDCMFVALSASVATEDIH
Sbjct  721  SNEALTLSQQQRFDLVLIDIRMPEIDGIECVRLWHDEPNNLDPDCMFVALSASVATEDIH  780

Query  781  RCKKNGIHHYITKPVTLATLARYISIAAEYQLLRNIELQEQDP  823
            RCKKNGIHHYITKPVTLATLARYISIAAEYQLLRNIELQEQDP
Sbjct  781  RCKKNGIHHYITKPVTLATLARYISIAAEYQLLRNIELQEQDP  823

28) TY21A_06410 in NC_021176


> U51927|1|G1|1498305|AAC44299.1|Salmonella_enterica_subsp._enterica_serovar_Typhimurium_LT2|-|1..2468|spiR|-|SpiR
Length=823

 Score = 1236 bits (4688),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 808/823 (99%), Positives = 817/823 (99%), Gaps = 0/823 (0%)

Query  1    MNLLNLKNTLQTslvirltflfllttiiiwllsvitAAYISMVQKRQHIIEDLSALSEMN  60
            MNLLNLKNTLQTSLVIRLTFLFLLTTIIIWLLSV+TAAYISMVQKRQHIIEDLS LSEMN
Sbjct  1    MNLLNLKNTLQTSLVIRLTFLFLLTTIIIWLLSVLTAAYISMVQKRQHIIEDLSVLSEMN  60

Query  61   IVLSNQRFEEAERDAKNLMYQCSLATEIHHNDIFPEVSRHLSVGPSNCTPTLNGEKHRLF  120
            IVLSNQRFEEAERDAKNLMYQCSLATEIHHNDIFPEVSRHLSVGPSNCTPTLNGEKHRLF
Sbjct  61   IVLSNQRFEEAERDAKNLMYQCSLATEIHHNDIFPEVSRHLSVGPSNCTPTLNGEKHRLF  120

Query  121  LQSSDIDEKSFRRDSFILNHKNEISLLSTDNPSDYSTLQLLTRKSFPLYPTHAGFYWSEP  180
            LQSSDIDE+SFRRDSFILNHKNEISLLSTDNPSDYSTLQ LTRKSFPLYPTHAGFYWSEP
Sbjct  121  LQSSDIDENSFRRDSFILNHKNEISLLSTDNPSDYSTLQPLTRKSFPLYPTHAGFYWSEP  180

Query  181  EYINGKGWHASVAVADQQGVFFGVMVKLPDLISKSHLPLDDSIRVWLDQNNHLLPFSYIP  240
            EYINGKGWHASVAVADQQGVFF V VKLPDLI+KSHLPLDDSIRVWLDQNNHLLPFSYIP
Sbjct  181  EYINGKGWHASVAVADQQGVFFEVTVKLPDLITKSHLPLDDSIRVWLDQNNHLLPFSYIP  240

Query  241  QKIRTQLENVTLHDGWQQIPGFLILRTTLHGPGWSLVTLYPYGNLHNRILKTILQQIPFT  300
            QKIRTQLENVTLHDGWQQIPGFLILRTTLHGPGWSLVTLYPYGNLHNRILK ILQQIPFT
Sbjct  241  QKIRTQLENVTLHDGWQQIPGFLILRTTLHGPGWSLVTLYPYGNLHNRILKIILQQIPFT  300

Query  301  LTALVLMTSAFCWLLHRSLAKPLWRFVDIINKTATAPLSTRLPAQRLDELDSIAGAFNQL  360
            LTALVLMTSAFCWLLHRSLAKPLWRFVD+INKTATAPLSTRLPAQRLDELDSIAGAFNQL
Sbjct  301  LTALVLMTSAFCWLLHRSLAKPLWRFVDVINKTATAPLSTRLPAQRLDELDSIAGAFNQL  360

Query  361  LDTLQVQYDNLENKVAERTQALNEAKKRAEQANKRKSIHLTVISHELRTPMNGVLGAIEL  420
            LDTLQVQYDNLENKVAERTQALNEAKKRAE+ANKRKSIHLTVISHELRTPMNGVLGAIEL
Sbjct  361  LDTLQVQYDNLENKVAERTQALNEAKKRAERANKRKSIHLTVISHELRTPMNGVLGAIEL  420

Query  421  LQTTPLNIEQQGLADTARNCTLSLLAIINNLLDFSRIESGHFTLHMEETALLPLLDQAMQ  480
            LQTTPLNIEQQGLADTARNCTLSLLAIINNLLDFSRIESGHFTLHMEETALLPLLDQAMQ
Sbjct  421  LQTTPLNIEQQGLADTARNCTLSLLAIINNLLDFSRIESGHFTLHMEETALLPLLDQAMQ  480

Query  481  TIQGPAQSKKLSLRTFVGQHVPLYFHTDSIRLRQILVNLLGNAVKFTETGGIRLTVKRHE  540
            TIQGPAQSKKLSLRTFVGQHVPLYFHTDSIRLRQILVNLLGNAVKFTETGGIRLTVKRHE
Sbjct  481  TIQGPAQSKKLSLRTFVGQHVPLYFHTDSIRLRQILVNLLGNAVKFTETGGIRLTVKRHE  540

Query  541  EQLIFLVSDSGKGIEIQQQSQIFTAFYQADTNSQGTGIGLTIASSLAKMMGGNLTLKSVP  600
            EQLIFLVSDSGKGIEIQQQSQIFTAFYQADTNSQGTGIGLTIASSLAKMMGGNLTLKSVP
Sbjct  541  EQLIFLVSDSGKGIEIQQQSQIFTAFYQADTNSQGTGIGLTIASSLAKMMGGNLTLKSVP  600

Query  601  GVGTCVSLVLPLQEYQPPQQIKGTLSAPFCLHRQLACWGIRGEPPHQQNALLNAELLYFP  660
            GVGTCVSLVLPLQEYQPPQ IKGTLSAPFCLHRQLACWGIRGEPPHQQNALLNAELLYF+
Sbjct  601  GVGTCVSLVLPLQEYQPPQPIKGTLSAPFCLHRQLACWGIRGEPPHQQNALLNAELLYFS  660

Query  661  GKLYDLAQQlilctpnipiinnllppWQLQILLVDDADINRDIIGKMLVSLGQHVTIAAS  720
            GKLYDLAQQLILCTPN+P+INNLLPPWQLQILLVDDADINRDIIGKMLVSLGQHVTIAAS
Sbjct  661  GKLYDLAQQLILCTPNMPVINNLLPPWQLQILLVDDADINRDIIGKMLVSLGQHVTIAAS  720

Query  721  SNEALTLSQQQRFDLVLIDIRMPEIDGIECVQLWHDEPNNLDPDCMFVALSASVATEDIH  780
            SNEALTLSQQQRFDLVLIDIRMPEIDGIECV+LWHDEPNNLDPDCMFVALSASVATEDIH
Sbjct  721  SNEALTLSQQQRFDLVLIDIRMPEIDGIECVRLWHDEPNNLDPDCMFVALSASVATEDIH  780

Query  781  RCKKNGIHHYITKPVTLATLARYISIAAEYQLLRNIELQEQDP  823
            RCKKNGIHHYITKPVTLATLARYISIAAEYQLLRNIELQEQDP
Sbjct  781  RCKKNGIHHYITKPVTLATLARYISIAAEYQLLRNIELQEQDP  823

29) ssrA in NC_004631


> U51927|1|G1|1498305|AAC44299.1|Salmonella_enterica_subsp._enterica_serovar_Typhimurium_LT2|-|1..2468|spiR|-|SpiR
Length=823

 Score = 1236 bits (4688),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 808/823 (99%), Positives = 817/823 (99%), Gaps = 0/823 (0%)

Query  1    MNLLNLKNTLQTslvirltflfllttiiiwllsvitAAYISMVQKRQHIIEDLSALSEMN  60
            MNLLNLKNTLQTSLVIRLTFLFLLTTIIIWLLSV+TAAYISMVQKRQHIIEDLS LSEMN
Sbjct  1    MNLLNLKNTLQTSLVIRLTFLFLLTTIIIWLLSVLTAAYISMVQKRQHIIEDLSVLSEMN  60

Query  61   IVLSNQRFEEAERDAKNLMYQCSLATEIHHNDIFPEVSRHLSVGPSNCTPTLNGEKHRLF  120
            IVLSNQRFEEAERDAKNLMYQCSLATEIHHNDIFPEVSRHLSVGPSNCTPTLNGEKHRLF
Sbjct  61   IVLSNQRFEEAERDAKNLMYQCSLATEIHHNDIFPEVSRHLSVGPSNCTPTLNGEKHRLF  120

Query  121  LQSSDIDEKSFRRDSFILNHKNEISLLSTDNPSDYSTLQLLTRKSFPLYPTHAGFYWSEP  180
            LQSSDIDE+SFRRDSFILNHKNEISLLSTDNPSDYSTLQ LTRKSFPLYPTHAGFYWSEP
Sbjct  121  LQSSDIDENSFRRDSFILNHKNEISLLSTDNPSDYSTLQPLTRKSFPLYPTHAGFYWSEP  180

Query  181  EYINGKGWHASVAVADQQGVFFGVMVKLPDLISKSHLPLDDSIRVWLDQNNHLLPFSYIP  240
            EYINGKGWHASVAVADQQGVFF V VKLPDLI+KSHLPLDDSIRVWLDQNNHLLPFSYIP
Sbjct  181  EYINGKGWHASVAVADQQGVFFEVTVKLPDLITKSHLPLDDSIRVWLDQNNHLLPFSYIP  240

Query  241  QKIRTQLENVTLHDGWQQIPGFLILRTTLHGPGWSLVTLYPYGNLHNRILKTILQQIPFT  300
            QKIRTQLENVTLHDGWQQIPGFLILRTTLHGPGWSLVTLYPYGNLHNRILK ILQQIPFT
Sbjct  241  QKIRTQLENVTLHDGWQQIPGFLILRTTLHGPGWSLVTLYPYGNLHNRILKIILQQIPFT  300

Query  301  LTALVLMTSAFCWLLHRSLAKPLWRFVDIINKTATAPLSTRLPAQRLDELDSIAGAFNQL  360
            LTALVLMTSAFCWLLHRSLAKPLWRFVD+INKTATAPLSTRLPAQRLDELDSIAGAFNQL
Sbjct  301  LTALVLMTSAFCWLLHRSLAKPLWRFVDVINKTATAPLSTRLPAQRLDELDSIAGAFNQL  360

Query  361  LDTLQVQYDNLENKVAERTQALNEAKKRAEQANKRKSIHLTVISHELRTPMNGVLGAIEL  420
            LDTLQVQYDNLENKVAERTQALNEAKKRAE+ANKRKSIHLTVISHELRTPMNGVLGAIEL
Sbjct  361  LDTLQVQYDNLENKVAERTQALNEAKKRAERANKRKSIHLTVISHELRTPMNGVLGAIEL  420

Query  421  LQTTPLNIEQQGLADTARNCTLSLLAIINNLLDFSRIESGHFTLHMEETALLPLLDQAMQ  480
            LQTTPLNIEQQGLADTARNCTLSLLAIINNLLDFSRIESGHFTLHMEETALLPLLDQAMQ
Sbjct  421  LQTTPLNIEQQGLADTARNCTLSLLAIINNLLDFSRIESGHFTLHMEETALLPLLDQAMQ  480

Query  481  TIQGPAQSKKLSLRTFVGQHVPLYFHTDSIRLRQILVNLLGNAVKFTETGGIRLTVKRHE  540
            TIQGPAQSKKLSLRTFVGQHVPLYFHTDSIRLRQILVNLLGNAVKFTETGGIRLTVKRHE
Sbjct  481  TIQGPAQSKKLSLRTFVGQHVPLYFHTDSIRLRQILVNLLGNAVKFTETGGIRLTVKRHE  540

Query  541  EQLIFLVSDSGKGIEIQQQSQIFTAFYQADTNSQGTGIGLTIASSLAKMMGGNLTLKSVP  600
            EQLIFLVSDSGKGIEIQQQSQIFTAFYQADTNSQGTGIGLTIASSLAKMMGGNLTLKSVP
Sbjct  541  EQLIFLVSDSGKGIEIQQQSQIFTAFYQADTNSQGTGIGLTIASSLAKMMGGNLTLKSVP  600

Query  601  GVGTCVSLVLPLQEYQPPQQIKGTLSAPFCLHRQLACWGIRGEPPHQQNALLNAELLYFP  660
            GVGTCVSLVLPLQEYQPPQ IKGTLSAPFCLHRQLACWGIRGEPPHQQNALLNAELLYF+
Sbjct  601  GVGTCVSLVLPLQEYQPPQPIKGTLSAPFCLHRQLACWGIRGEPPHQQNALLNAELLYFS  660

Query  661  GKLYDLAQQlilctpnipiinnllppWQLQILLVDDADINRDIIGKMLVSLGQHVTIAAS  720
            GKLYDLAQQLILCTPN+P+INNLLPPWQLQILLVDDADINRDIIGKMLVSLGQHVTIAAS
Sbjct  661  GKLYDLAQQLILCTPNMPVINNLLPPWQLQILLVDDADINRDIIGKMLVSLGQHVTIAAS  720

Query  721  SNEALTLSQQQRFDLVLIDIRMPEIDGIECVQLWHDEPNNLDPDCMFVALSASVATEDIH  780
            SNEALTLSQQQRFDLVLIDIRMPEIDGIECV+LWHDEPNNLDPDCMFVALSASVATEDIH
Sbjct  721  SNEALTLSQQQRFDLVLIDIRMPEIDGIECVRLWHDEPNNLDPDCMFVALSASVATEDIH  780

Query  781  RCKKNGIHHYITKPVTLATLARYISIAAEYQLLRNIELQEQDP  823
            RCKKNGIHHYITKPVTLATLARYISIAAEYQLLRNIELQEQDP
Sbjct  781  RCKKNGIHHYITKPVTLATLARYISIAAEYQLLRNIELQEQDP  823

30) SeD_A1949 in NC_011205


> U51927|1|G1|1498305|AAC44299.1|Salmonella_enterica_subsp._enterica_serovar_Typhimurium_LT2|-|1..2468|spiR|-|SpiR
Length=823

 Score = 1234 bits (4680),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 818/823 (99%), Positives = 822/823 (99%), Gaps = 0/823 (0%)

Query  1    MNLLNLKNTLQTslvirltflfllttiiiwllsvltAAYISMVQKRQHIIEDLSVLSEMN  60
            MNLLNLKNTLQTSLVIRLTFLFLLTTIIIWLLSVLTAAYISMVQKRQHIIEDLSVLSEMN
Sbjct  1    MNLLNLKNTLQTSLVIRLTFLFLLTTIIIWLLSVLTAAYISMVQKRQHIIEDLSVLSEMN  60

Query  61   IVLSNQRFEEAERDAKNLMYQCSLATEIHHNDIFPEVSRHLSVGPSNCTPTLNGEKHRLF  120
            IVLSNQRFEEAERDAKNLMYQCSLATEIHHNDIFPEVSRHLSVGPSNCTPTLNGEKHRLF
Sbjct  61   IVLSNQRFEEAERDAKNLMYQCSLATEIHHNDIFPEVSRHLSVGPSNCTPTLNGEKHRLF  120

Query  121  LQSSDIDENSFRRDSFILNHKNEISLLSTDNPSDYSTLQPLTRKSFPLYPTHAGFYWSEP  180
            LQSSDIDENSFRRDSFILNHKNEISLLSTDNPSDYSTLQPLTRKSFPLYPTHAGFYWSEP
Sbjct  121  LQSSDIDENSFRRDSFILNHKNEISLLSTDNPSDYSTLQPLTRKSFPLYPTHAGFYWSEP  180

Query  181  EYINGKGWHASVAVADQQGVFFGVTVKLPDLITKSHLPLDDSIRVWLDQNNHLLPFSYIP  240
            EYINGKGWHASVAVADQQGVFF VTVKLPDLITKSHLPLDDSIRVWLDQNNHLLPFSYIP
Sbjct  181  EYINGKGWHASVAVADQQGVFFEVTVKLPDLITKSHLPLDDSIRVWLDQNNHLLPFSYIP  240

Query  241  QKIRTQLENVTLHDGWQQIPGFLILRTTLHGPGWSLVTLYPYGNLHNRILKIILQQIPFT  300
            QKIRTQLENVTLHDGWQQIPGFLILRTTLHGPGWSLVTLYPYGNLHNRILKIILQQIPFT
Sbjct  241  QKIRTQLENVTLHDGWQQIPGFLILRTTLHGPGWSLVTLYPYGNLHNRILKIILQQIPFT  300

Query  301  LTALVLMTSAFCWLLHRSLAKPLWRFVDVINKTATAPLSTRLPAQRLDELDSIAGAFNQL  360
            LTALVLMTSAFCWLLHRSLAKPLWRFVDVINKTATAPLSTRLPAQRLDELDSIAGAFNQL
Sbjct  301  LTALVLMTSAFCWLLHRSLAKPLWRFVDVINKTATAPLSTRLPAQRLDELDSIAGAFNQL  360

Query  361  LDTLQVQYDNLENKVAERTQALneakkraerankrkSIHLTVISHELRTPMNGVLGAIEL  420
            LDTLQVQYDNLENKVAERTQALNEAKKRAERANKRKSIHLTVISHELRTPMNGVLGAIEL
Sbjct  361  LDTLQVQYDNLENKVAERTQALNEAKKRAERANKRKSIHLTVISHELRTPMNGVLGAIEL  420

Query  421  LQTTPLNIEQQGLADTARNCTLSLLAIINNLLDFSRIESGHFTLHMEETALLPLLDQAMQ  480
            LQTTPLNIEQQGLADTARNCTLSLLAIINNLLDFSRIESGHFTLHMEETALLPLLDQAMQ
Sbjct  421  LQTTPLNIEQQGLADTARNCTLSLLAIINNLLDFSRIESGHFTLHMEETALLPLLDQAMQ  480

Query  481  TIQGPAQSKKLSLRTFVGQHVPLYFHTDSIRLRQILVNLLGNAVKFTETGGIRLTVKRHE  540
            TIQGPAQSKKLSLRTFVGQHVPLYFHTDSIRLRQILVNLLGNAVKFTETGGIRLTVKRHE
Sbjct  481  TIQGPAQSKKLSLRTFVGQHVPLYFHTDSIRLRQILVNLLGNAVKFTETGGIRLTVKRHE  540

Query  541  EQLIFLVSDSGKGIEIQQQSQIFTAFYQADTNSQGTGIGLTIASSLAKMMGGNLTLKSVP  600
            EQLIFLVSDSGKGIEIQQQSQIFTAFYQADTNSQGTGIGLTIASSLAKMMGGNLTLKSVP
Sbjct  541  EQLIFLVSDSGKGIEIQQQSQIFTAFYQADTNSQGTGIGLTIASSLAKMMGGNLTLKSVP  600

Query  601  GVGTCVSLVLPLQEYQPPQPIKGTLSAPFCLHRQLACWGIRGEPPHQQNALLNAELLYFP  660
            GVGTCVSLVLPLQEYQPPQPIKGTLSAPFCLHRQLACWGIRGEPPHQQNALLNAELLYF+
Sbjct  601  GVGTCVSLVLPLQEYQPPQPIKGTLSAPFCLHRQLACWGIRGEPPHQQNALLNAELLYFS  660

Query  661  GKLYDLAQQLILCTpnipvinnllppWQLQILLVDDADINRDIIGKMLVSLGQHVTVAAS  720
            GKLYDLAQQLILCTPN+PVINNLLPPWQLQILLVDDADINRDIIGKMLVSLGQHVT+AAS
Sbjct  661  GKLYDLAQQLILCTPNMPVINNLLPPWQLQILLVDDADINRDIIGKMLVSLGQHVTIAAS  720

Query  721  SNEALTLSQQQRFDLVLIDIRMPEIDGIECVQLWHDEPNNLDPDCMFVALSASVATEDIH  780
            SNEALTLSQQQRFDLVLIDIRMPEIDGIECV+LWHDEPNNLDPDCMFVALSASVATEDIH
Sbjct  721  SNEALTLSQQQRFDLVLIDIRMPEIDGIECVRLWHDEPNNLDPDCMFVALSASVATEDIH  780

Query  781  RCKKNGIHHYITKPVTLATLARYISIAAEYQLLRNIELQEQDP  823
            RCKKNGIHHYITKPVTLATLARYISIAAEYQLLRNIELQEQDP
Sbjct  781  RCKKNGIHHYITKPVTLATLARYISIAAEYQLLRNIELQEQDP  823

31) ssrA in NC_011294


> U51927|1|G1|1498305|AAC44299.1|Salmonella_enterica_subsp._enterica_serovar_Typhimurium_LT2|-|1..2468|spiR|-|SpiR
Length=823

 Score = 1234 bits (4680),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 818/823 (99%), Positives = 822/823 (99%), Gaps = 0/823 (0%)

Query  1    MNLLNLKNTLQTslvirltflfllttiiiwllsvltAAYISMVQKRQHIIEDLSVLSEMN  60
            MNLLNLKNTLQTSLVIRLTFLFLLTTIIIWLLSVLTAAYISMVQKRQHIIEDLSVLSEMN
Sbjct  1    MNLLNLKNTLQTSLVIRLTFLFLLTTIIIWLLSVLTAAYISMVQKRQHIIEDLSVLSEMN  60

Query  61   IVLSNQRFEEAERDAKNLMYQCSLATEIHHNDIFPEVSRHLSVGPSNCTPTLNGEKHRLF  120
            IVLSNQRFEEAERDAKNLMYQCSLATEIHHNDIFPEVSRHLSVGPSNCTPTLNGEKHRLF
Sbjct  61   IVLSNQRFEEAERDAKNLMYQCSLATEIHHNDIFPEVSRHLSVGPSNCTPTLNGEKHRLF  120

Query  121  LQSSDIDENSFRRDSFILNHKNEISLLSTDNPSDYSTLQPLTRKSFPLYPTHAGFYWSEP  180
            LQSSDIDENSFRRDSFILNHKNEISLLSTDNPSDYSTLQPLTRKSFPLYPTHAGFYWSEP
Sbjct  121  LQSSDIDENSFRRDSFILNHKNEISLLSTDNPSDYSTLQPLTRKSFPLYPTHAGFYWSEP  180

Query  181  EYINGKGWHASVAVADQQGVFFGVTVKLPDLITKSHLPLDDSIRVWLDQNNHLLPFSYIP  240
            EYINGKGWHASVAVADQQGVFF VTVKLPDLITKSHLPLDDSIRVWLDQNNHLLPFSYIP
Sbjct  181  EYINGKGWHASVAVADQQGVFFEVTVKLPDLITKSHLPLDDSIRVWLDQNNHLLPFSYIP  240

Query  241  QKIRTQLENVTLHDGWQQIPGFLILRTTLHGPGWSLVTLYPYGNLHNRILKIILQQIPFT  300
            QKIRTQLENVTLHDGWQQIPGFLILRTTLHGPGWSLVTLYPYGNLHNRILKIILQQIPFT
Sbjct  241  QKIRTQLENVTLHDGWQQIPGFLILRTTLHGPGWSLVTLYPYGNLHNRILKIILQQIPFT  300

Query  301  LTALVLMTSAFCWLLHRSLAKPLWRFVDVINKTATAPLSTRLPAQRLDELDSIAGAFNQL  360
            LTALVLMTSAFCWLLHRSLAKPLWRFVDVINKTATAPLSTRLPAQRLDELDSIAGAFNQL
Sbjct  301  LTALVLMTSAFCWLLHRSLAKPLWRFVDVINKTATAPLSTRLPAQRLDELDSIAGAFNQL  360

Query  361  LDTLQVQYDNLENKVAERTQALneakkraerankrkSIHLTVISHELRTPMNGVLGAIEL  420
            LDTLQVQYDNLENKVAERTQALNEAKKRAERANKRKSIHLTVISHELRTPMNGVLGAIEL
Sbjct  361  LDTLQVQYDNLENKVAERTQALNEAKKRAERANKRKSIHLTVISHELRTPMNGVLGAIEL  420

Query  421  LQTTPLNIEQQGLADTARNCTLSLLAIINNLLDFSRIESGHFTLHMEETALLPLLDQAMQ  480
            LQTTPLNIEQQGLADTARNCTLSLLAIINNLLDFSRIESGHFTLHMEETALLPLLDQAMQ
Sbjct  421  LQTTPLNIEQQGLADTARNCTLSLLAIINNLLDFSRIESGHFTLHMEETALLPLLDQAMQ  480

Query  481  TIQGPAQSKKLSLRTFVGQHVPLYFHTDSIRLRQILVNLLGNAVKFTETGGIRLTVKRHE  540
            TIQGPAQSKKLSLRTFVGQHVPLYFHTDSIRLRQILVNLLGNAVKFTETGGIRLTVKRHE
Sbjct  481  TIQGPAQSKKLSLRTFVGQHVPLYFHTDSIRLRQILVNLLGNAVKFTETGGIRLTVKRHE  540

Query  541  EQLIFLVSDSGKGIEIQQQSQIFTAFYQADTNSQGTGIGLTIASSLAKMMGGNLTLKSVP  600
            EQLIFLVSDSGKGIEIQQQSQIFTAFYQADTNSQGTGIGLTIASSLAKMMGGNLTLKSVP
Sbjct  541  EQLIFLVSDSGKGIEIQQQSQIFTAFYQADTNSQGTGIGLTIASSLAKMMGGNLTLKSVP  600

Query  601  GVGTCVSLVLPLQEYQPPQPIKGTLSAPFCLHRQLACWGIRGEPPHQQNALLNAELLYFP  660
            GVGTCVSLVLPLQEYQPPQPIKGTLSAPFCLHRQLACWGIRGEPPHQQNALLNAELLYF+
Sbjct  601  GVGTCVSLVLPLQEYQPPQPIKGTLSAPFCLHRQLACWGIRGEPPHQQNALLNAELLYFS  660

Query  661  GKLYDLAQQLILCTpnipvinnllppWQLQILLVDDADINRDIIGKMLVSLGQHVTVAAS  720
            GKLYDLAQQLILCTPN+PVINNLLPPWQLQILLVDDADINRDIIGKMLVSLGQHVT+AAS
Sbjct  661  GKLYDLAQQLILCTPNMPVINNLLPPWQLQILLVDDADINRDIIGKMLVSLGQHVTIAAS  720

Query  721  SNEALTLSQQQRFDLVLIDIRMPEIDGIECVQLWHDEPNNLDPDCMFVALSASVATEDIH  780
            SNEALTLSQQQRFDLVLIDIRMPEIDGIECV+LWHDEPNNLDPDCMFVALSASVATEDIH
Sbjct  721  SNEALTLSQQQRFDLVLIDIRMPEIDGIECVRLWHDEPNNLDPDCMFVALSASVATEDIH  780

Query  781  RCKKNGIHHYITKPVTLATLARYISIAAEYQLLRNIELQEQDP  823
            RCKKNGIHHYITKPVTLATLARYISIAAEYQLLRNIELQEQDP
Sbjct  781  RCKKNGIHHYITKPVTLATLARYISIAAEYQLLRNIELQEQDP  823

32) ssrA in NC_003198


> U51927|1|G1|1498305|AAC44299.1|Salmonella_enterica_subsp._enterica_serovar_Typhimurium_LT2|-|1..2468|spiR|-|SpiR
Length=823

 Score = 1234 bits (4682),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 807/823 (99%), Positives = 817/823 (99%), Gaps = 0/823 (0%)

Query  1    MNLLNLKNTLQTslvirltflfllttiiiwllsvitAAYISMVQKRQHIIEDLSALSEMN  60
            MNLLNLKNTLQTSLVIRLTFLFLLTTIIIWLLSV+TAAYISMVQKRQHIIEDLS LSEMN
Sbjct  1    MNLLNLKNTLQTSLVIRLTFLFLLTTIIIWLLSVLTAAYISMVQKRQHIIEDLSVLSEMN  60

Query  61   IVLSNQRFEEAERDAKNLMYQCSLATEIHHNDIFPEVSRHLSVGPSNCTPTLNGEKHRLF  120
            IVLSNQRFEEAERDAKNLMYQCSLATEIHHNDIFPEVSRHLSVGPSNCTPTLNGEKHRLF
Sbjct  61   IVLSNQRFEEAERDAKNLMYQCSLATEIHHNDIFPEVSRHLSVGPSNCTPTLNGEKHRLF  120

Query  121  LQSSDIDEKSFRRDSFILNHKNEISLLSTDNPSDYSTLQLLTRKSFPLYPTHAGFYWSEP  180
            LQSSDIDE+SFRRDSFILNHKNEISLLSTDNPSDYSTLQ LTRKSFPLYPTHAGFYWSEP
Sbjct  121  LQSSDIDENSFRRDSFILNHKNEISLLSTDNPSDYSTLQPLTRKSFPLYPTHAGFYWSEP  180

Query  181  EYINGKGWHASVAVADQQGVFFGVMVKLPDLISKSHLPLDDSIRVWLDQNNHLLPFSYIP  240
            EYINGKGWHASVAVADQQGVFF V VKLPDLI+KSHLPLDDSIRVWLDQNNHLLPFSYIP
Sbjct  181  EYINGKGWHASVAVADQQGVFFEVTVKLPDLITKSHLPLDDSIRVWLDQNNHLLPFSYIP  240

Query  241  QKIRTQLENVTLHDGWQQIPGFLILRTTLHGPGWSLVTLYPYGNLHNRILKTILQQIPFT  300
            QKIRTQLENVTLHDGWQQIPGFLILRTTLHGPGWSLVTLYPYGNLHNRILK ILQQIPFT
Sbjct  241  QKIRTQLENVTLHDGWQQIPGFLILRTTLHGPGWSLVTLYPYGNLHNRILKIILQQIPFT  300

Query  301  LTALVLMTSAFCWLLHRSLAKPLWRFVDIINKTATAPLSTRLPAQRLDELDSIAGAFNQL  360
            LTALVLMTSAFCWLLHRSLAKPLWRFVD+INKTATAPLSTRLPAQRLDELDSIAGAFNQL
Sbjct  301  LTALVLMTSAFCWLLHRSLAKPLWRFVDVINKTATAPLSTRLPAQRLDELDSIAGAFNQL  360

Query  361  LDTLQVQYDNLENKVAERTQALNEAKKRAEQANKRKSIHLTVISHELRTPMNGVLGAIEL  420
            LDTLQVQYDNLENKVAERTQALNEAKKRAE+ANKRKSIHLTVISHELRTPMNGVLGAIEL
Sbjct  361  LDTLQVQYDNLENKVAERTQALNEAKKRAERANKRKSIHLTVISHELRTPMNGVLGAIEL  420

Query  421  LQTTPLNIEQQGLADTARNCTLSLLAIINNLLDFSRIESGHFTLHMEETALLPLLDQAMQ  480
            LQTTPLNIEQQGLADTARNCTLSLLAIINNLLDFSRIESGHFTLHMEETALLPLLDQAMQ
Sbjct  421  LQTTPLNIEQQGLADTARNCTLSLLAIINNLLDFSRIESGHFTLHMEETALLPLLDQAMQ  480

Query  481  TIQGPAQSKKLSLRTFVGQHVPLYFHTDSIRLRQILVNLLGNAVKFTETGGIRLTVKRHE  540
            TIQGPAQSKKLSLRTFVGQHVPLYFHTDSIRLRQILVNLLGNAVKFTETGGIRLTVKRHE
Sbjct  481  TIQGPAQSKKLSLRTFVGQHVPLYFHTDSIRLRQILVNLLGNAVKFTETGGIRLTVKRHE  540

Query  541  EQLIFLVSDSGKGIEIQQQSQIFTAFYQADTNSQGTGIGLTIASSLAKMMGGNLTLKSVP  600
            EQLIFLVSDSGKGIEIQQQSQIFTAFYQADTNSQGTGIGLTIASSLAKMMGGNLTLKSVP
Sbjct  541  EQLIFLVSDSGKGIEIQQQSQIFTAFYQADTNSQGTGIGLTIASSLAKMMGGNLTLKSVP  600

Query  601  GVGTCVSLVLPLQEYQPPQQIKGTLSAPFCLHRQLACWGIRGEPPHQQNALLNAEFLYFP  660
            GVGTCVSLVLPLQEYQPPQ IKGTLSAPFCLHRQLACWGIRGEPPHQQNALLNAE+LYF+
Sbjct  601  GVGTCVSLVLPLQEYQPPQPIKGTLSAPFCLHRQLACWGIRGEPPHQQNALLNAELLYFS  660

Query  661  GKLYDLAQQlilctpnipiinnllppWQLQILLVDDADINRDIIGKMLVSLGQHVTIAAS  720
            GKLYDLAQQLILCTPN+P+INNLLPPWQLQILLVDDADINRDIIGKMLVSLGQHVTIAAS
Sbjct  661  GKLYDLAQQLILCTPNMPVINNLLPPWQLQILLVDDADINRDIIGKMLVSLGQHVTIAAS  720

Query  721  SNEALTLSQQQRFDLVLIDIRMPEIDGIECVQLWHDEPNNLDPDCMFVALSASVATEDIH  780
            SNEALTLSQQQRFDLVLIDIRMPEIDGIECV+LWHDEPNNLDPDCMFVALSASVATEDIH
Sbjct  721  SNEALTLSQQQRFDLVLIDIRMPEIDGIECVRLWHDEPNNLDPDCMFVALSASVATEDIH  780

Query  781  RCKKNGIHHYITKPVTLATLARYISIAAEYQLLRNIELQEQDP  823
            RCKKNGIHHYITKPVTLATLARYISIAAEYQLLRNIELQEQDP
Sbjct  781  RCKKNGIHHYITKPVTLATLARYISIAAEYQLLRNIELQEQDP  823

33) ssrA in NC_006905


> U51927|1|G1|1498305|AAC44299.1|Salmonella_enterica_subsp._enterica_serovar_Typhimurium_LT2|-|1..2468|spiR|-|SpiR
Length=823

 Score = 1232 bits (4674),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 817/823 (99%), Positives = 822/823 (99%), Gaps = 0/823 (0%)

Query  1    MNLLNLKNTLQTslvirltflfllttiiiwllsvltAAYISMVQKRQHIIEDLSVLSEMN  60
            MNLLNLKNTLQTSLVIRLTFLFLLTTIIIWLLSVLTAAYISMVQKRQHIIEDLSVLSEMN
Sbjct  1    MNLLNLKNTLQTSLVIRLTFLFLLTTIIIWLLSVLTAAYISMVQKRQHIIEDLSVLSEMN  60

Query  61   IVLSNQRFEEAERDAKNLMYQCSLATEIHHNDIFPEVSRHLSVGPSNCTPTLNGEKHRLF  120
            IVLSNQRFEEAERDAKNLMYQCSLATEIHHNDIFPEVSRHLSVGPSNCTPTLNGEKHRLF
Sbjct  61   IVLSNQRFEEAERDAKNLMYQCSLATEIHHNDIFPEVSRHLSVGPSNCTPTLNGEKHRLF  120

Query  121  LQSSDIDEKSFRRDSFILNHKNEISLLSTDNPSDYSTLQPLTRKSFPLYPTHAGFYWSEP  180
            LQSSDIDE+SFRRDSFILNHKNEISLLSTDNPSDYSTLQPLTRKSFPLYPTHAGFYWSEP
Sbjct  121  LQSSDIDENSFRRDSFILNHKNEISLLSTDNPSDYSTLQPLTRKSFPLYPTHAGFYWSEP  180

Query  181  EYINGKGWHASVAVADQQGVFFGVTVKLPDLITKSHLPLDDSIRVWLDQNNHLLPFSYIP  240
            EYINGKGWHASVAVADQQGVFF VTVKLPDLITKSHLPLDDSIRVWLDQNNHLLPFSYIP
Sbjct  181  EYINGKGWHASVAVADQQGVFFEVTVKLPDLITKSHLPLDDSIRVWLDQNNHLLPFSYIP  240

Query  241  QKIRTQLENVTLHDGWQQIPGFLILRTTLHGPGWSLVTLYPYGNLHNRILKIILQQIPFT  300
            QKIRTQLENVTLHDGWQQIPGFLILRTTLHGPGWSLVTLYPYGNLHNRILKIILQQIPFT
Sbjct  241  QKIRTQLENVTLHDGWQQIPGFLILRTTLHGPGWSLVTLYPYGNLHNRILKIILQQIPFT  300

Query  301  LTALVLMTSAFCWLLHRSLAKPLWRFVDVINKTATAPLSTRLPAQRLDELDSIAGAFNQL  360
            LTALVLMTSAFCWLLHRSLAKPLWRFVDVINKTATAPLSTRLPAQRLDELDSIAGAFNQL
Sbjct  301  LTALVLMTSAFCWLLHRSLAKPLWRFVDVINKTATAPLSTRLPAQRLDELDSIAGAFNQL  360

Query  361  LDTLQVQYDNLENKVAERTQALneakkraerankrkSIHLTVISHELRTPMNGVLGAIEL  420
            LDTLQVQYDNLENKVAERTQALNEAKKRAERANKRKSIHLTVISHELRTPMNGVLGAIEL
Sbjct  361  LDTLQVQYDNLENKVAERTQALNEAKKRAERANKRKSIHLTVISHELRTPMNGVLGAIEL  420

Query  421  LQTTPLNIEQQGLADTARNCTLSLLAIINNLLDFSRIESGHFTLHMEETALLPLLDQAMQ  480
            LQTTPLNIEQQGLADTARNCTLSLLAIINNLLDFSRIESGHFTLHMEETALLPLLDQAMQ
Sbjct  421  LQTTPLNIEQQGLADTARNCTLSLLAIINNLLDFSRIESGHFTLHMEETALLPLLDQAMQ  480

Query  481  TIQGPAQSKKLSLRTFVGQHVPLYFHTDSIRLRQILVNLLGNAVKFTETGGIRLTVKRHE  540
            TIQGPAQSKKLSLRTFVGQHVPLYFHTDSIRLRQILVNLLGNAVKFTETGGIRLTVKRHE
Sbjct  481  TIQGPAQSKKLSLRTFVGQHVPLYFHTDSIRLRQILVNLLGNAVKFTETGGIRLTVKRHE  540

Query  541  EQLIFLVSDSGKGIEIQQQSQIFTAFYQADTNSQGTGIGLTIASSLAKMMGGNLTLKSVP  600
            EQLIFLVSDSGKGIEIQQQSQIFTAFYQADTNSQGTGIGLTIASSLAKMMGGNLTLKSVP
Sbjct  541  EQLIFLVSDSGKGIEIQQQSQIFTAFYQADTNSQGTGIGLTIASSLAKMMGGNLTLKSVP  600

Query  601  GVGTCVSLVLPLQEYQPPQPIKGTLSAPFCLHRQLACWGIRGEPPHQQNALLNAELLYFP  660
            GVGTCVSLVLPLQEYQPPQPIKGTLSAPFCLHRQLACWGIRGEPPHQQNALLNAELLYF+
Sbjct  601  GVGTCVSLVLPLQEYQPPQPIKGTLSAPFCLHRQLACWGIRGEPPHQQNALLNAELLYFS  660

Query  661  GKLYDLAQQLILCTpnipvinnllppWQLQILLVDDADINRDIISKMLVSLGQHVTIAAS  720
            GKLYDLAQQLILCTPN+PVINNLLPPWQLQILLVDDADINRDII+KMLVSLGQHVTIAAS
Sbjct  661  GKLYDLAQQLILCTPNMPVINNLLPPWQLQILLVDDADINRDIIGKMLVSLGQHVTIAAS  720

Query  721  SNEALTLSQQQRFDLVLIDIRMPEIDGIECVQLWHDEPNNLDPDCMFVALSASVATEDIH  780
            SNEALTLSQQQRFDLVLIDIRMPEIDGIECV+LWHDEPNNLDPDCMFVALSASVATEDIH
Sbjct  721  SNEALTLSQQQRFDLVLIDIRMPEIDGIECVRLWHDEPNNLDPDCMFVALSASVATEDIH  780

Query  781  RCKKNGIHHYITKPVTLATLARYISIAAEYQLLRNIELQEQDP  823
            RCKKNGIHHYITKPVTLATLARYISIAAEYQLLRNIELQEQDP
Sbjct  781  RCKKNGIHHYITKPVTLATLARYISIAAEYQLLRNIELQEQDP  823

34) ssrA in NC_012125


> U51927|1|G1|1498305|AAC44299.1|Salmonella_enterica_subsp._enterica_serovar_Typhimurium_LT2|-|1..2468|spiR|-|SpiR
Length=823

 Score = 1232 bits (4673),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 816/823 (99%), Positives = 822/823 (99%), Gaps = 0/823 (0%)

Query  1    MNLLNLKNTLQTslvirltflfllttiiiwllsvltAAYISMVQKRQHIIEDLSVLSEMN  60
            MNLLNLKNTLQTSLVIRLTFLFLLTTIIIWLLSVLTAAYISMVQKRQHIIEDLSVLSEMN
Sbjct  1    MNLLNLKNTLQTSLVIRLTFLFLLTTIIIWLLSVLTAAYISMVQKRQHIIEDLSVLSEMN  60

Query  61   IVLSNQRFEEAERDAKNLMYQCSLATEIHHNDIFPEVSRHLSVGPSNCTPTLNGEKHRLF  120
            IVLSNQRFEEAERDAKNLMYQCSLATEIHHNDIFPEVSRHLSVGPSNCTPTLNGEKHRLF
Sbjct  61   IVLSNQRFEEAERDAKNLMYQCSLATEIHHNDIFPEVSRHLSVGPSNCTPTLNGEKHRLF  120

Query  121  LQSSDIDEKSFRRDSFILNHKNEISLLSTDNPSDYSTLQPLTRKSFPLYPTHAGFYWSEP  180
            LQSSDIDE+SFRRDSFILNHKNEISLLSTDNPSDYSTLQPLTRKSFPLYPTHAGFYWSEP
Sbjct  121  LQSSDIDENSFRRDSFILNHKNEISLLSTDNPSDYSTLQPLTRKSFPLYPTHAGFYWSEP  180

Query  181  EYINGKGWHASVAVADQQGVFFGVTVKLPDLITKSHLPLDDSIRVWLDQNNHLLPFSYIP  240
            EYINGKGWHASVAVADQQGVFF VTVKLPDLITKSHLPLDDSIRVWLDQNNHLLPFSYIP
Sbjct  181  EYINGKGWHASVAVADQQGVFFEVTVKLPDLITKSHLPLDDSIRVWLDQNNHLLPFSYIP  240

Query  241  QKIRTQLENVTLHDGWQQIPGFLILRTTLHGPGWSLVTLYPYGNLHNRILKIILQQIPFT  300
            QKIRTQLENVTLHDGWQQIPGFLILRTTLHGPGWSLVTLYPYGNLHNRILKIILQQIPFT
Sbjct  241  QKIRTQLENVTLHDGWQQIPGFLILRTTLHGPGWSLVTLYPYGNLHNRILKIILQQIPFT  300

Query  301  LTALVLMTSAFCWLLHRSLAKPLWRFVDVINKTATAPLSTRLPAQRLDELDSIAGAFNQL  360
            LTALVLMTSAFCWLLHRSLAKPLWRFVDVINKTATAPLSTRLPAQRLDELDSIAGAFNQL
Sbjct  301  LTALVLMTSAFCWLLHRSLAKPLWRFVDVINKTATAPLSTRLPAQRLDELDSIAGAFNQL  360

Query  361  LDTLQVQYDNLENKVAERTQALneakkraerankrkSIHLTVISHELRTPMNGVLGAIEL  420
            LDTLQVQYDNLENKVAERTQALNEAKKRAERANKRKSIHLTVISHELRTPMNGVLGAIEL
Sbjct  361  LDTLQVQYDNLENKVAERTQALNEAKKRAERANKRKSIHLTVISHELRTPMNGVLGAIEL  420

Query  421  LQTTPLNIEQQGLADTARNCTLSLLAIINNLLDFSRIESGHFTLHMEETALLPLLDQAMQ  480
            LQTTPLNIEQQGLADTARNCTLSLLAIINNLLDFSRIESGHFTLHMEETALLPLLDQAMQ
Sbjct  421  LQTTPLNIEQQGLADTARNCTLSLLAIINNLLDFSRIESGHFTLHMEETALLPLLDQAMQ  480

Query  481  TIQGPAQSKKLSLRTFVGQHVPLYFHTDSIRLRQILVNLLGNAVKFTETGGIRLTVKRHE  540
            TIQGPAQSKKLSLRTFVGQHVPLYFHTDSIRLRQILVNLLGNAVKFTETGGIRLTVKRHE
Sbjct  481  TIQGPAQSKKLSLRTFVGQHVPLYFHTDSIRLRQILVNLLGNAVKFTETGGIRLTVKRHE  540

Query  541  EQLIFLVSDSGKGIEIQEQSQIFTAFYQADTNSQGTGIGLTIASSLAKMMGGNLTLKSVP  600
            EQLIFLVSDSGKGIEIQ+QSQIFTAFYQADTNSQGTGIGLTIASSLAKMMGGNLTLKSVP
Sbjct  541  EQLIFLVSDSGKGIEIQQQSQIFTAFYQADTNSQGTGIGLTIASSLAKMMGGNLTLKSVP  600

Query  601  GVGTCVSLVLPLQEYQPPQPIKGTLSAPFCLHRQLACWGIRGEPPHQQNALLNAELLYFP  660
            GVGTCVSLVLPLQEYQPPQPIKGTLSAPFCLHRQLACWGIRGEPPHQQNALLNAELLYF+
Sbjct  601  GVGTCVSLVLPLQEYQPPQPIKGTLSAPFCLHRQLACWGIRGEPPHQQNALLNAELLYFS  660

Query  661  GKLYDLAQQLILCTpnipvinnllppWQLQILLVDDADINRDIISKMLVSLGQHVTIAAS  720
            GKLYDLAQQLILCTPN+PVINNLLPPWQLQILLVDDADINRDII+KMLVSLGQHVTIAAS
Sbjct  661  GKLYDLAQQLILCTPNMPVINNLLPPWQLQILLVDDADINRDIIGKMLVSLGQHVTIAAS  720

Query  721  SNEALTLSQQQRFDLVLIDIRMPEIDGIECVQLWHDEPNNLDPDCMFVALSASVATEDIH  780
            SNEALTLSQQQRFDLVLIDIRMPEIDGIECV+LWHDEPNNLDPDCMFVALSASVATEDIH
Sbjct  721  SNEALTLSQQQRFDLVLIDIRMPEIDGIECVRLWHDEPNNLDPDCMFVALSASVATEDIH  780

Query  781  RCKKNGIHHYITKPVTLATLARYISIAAEYQLLRNIELQEQDP  823
            RCKKNGIHHYITKPVTLATLARYISIAAEYQLLRNIELQEQDP
Sbjct  781  RCKKNGIHHYITKPVTLATLARYISIAAEYQLLRNIELQEQDP  823

35) ssrA in NC_022221


> U51927|1|G1|1498305|AAC44299.1|Salmonella_enterica_subsp._enterica_serovar_Typhimurium_LT2|-|1..2468|spiR|-|SpiR
Length=823

 Score = 1230 bits (4664),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 817/823 (99%), Positives = 821/823 (99%), Gaps = 0/823 (0%)

Query  1    MNLLNLKNTLQTslvirltflfllttiiiwllsvltAAYISMVQKRQHIIEDLSVLSEMN  60
            MNLLNLKNTLQTSLVIRLTFLFLLTTIIIWLLSVLTAAYISMVQKRQHIIEDLSVLSEMN
Sbjct  1    MNLLNLKNTLQTSLVIRLTFLFLLTTIIIWLLSVLTAAYISMVQKRQHIIEDLSVLSEMN  60

Query  61   IVLSNQRFEEAERDAKNLMYQCSLATEIHHNDIFPEVSRHLSVGPSNCTPTLNGEKHRLF  120
            IVLSNQRFEEAERDAKNLMYQCSLATEIHHNDIFPEVSRHLSVGPSNCTPTLNGEKHRLF
Sbjct  61   IVLSNQRFEEAERDAKNLMYQCSLATEIHHNDIFPEVSRHLSVGPSNCTPTLNGEKHRLF  120

Query  121  LQSSDIDENSFRRDSFILNHKNEISLLSTDNPSDYSTLQPLTRKSFPLYPTHAGFYWSEP  180
            LQSSDIDENSFRRDSFILNHKNEISLLSTDNPSDYSTLQPLTRKSFPLYPTHAGFYWSEP
Sbjct  121  LQSSDIDENSFRRDSFILNHKNEISLLSTDNPSDYSTLQPLTRKSFPLYPTHAGFYWSEP  180

Query  181  EYINGKGWHASVAVADQQGVFFGVTVKLPDLITKSHLPLDDSIRVWLDQNNHLLPFSYIP  240
            EYINGKGWHASVAVADQQGVFF VTVKLPDLITKSHLPLDDSIRVWLDQNNHLLPFSYIP
Sbjct  181  EYINGKGWHASVAVADQQGVFFEVTVKLPDLITKSHLPLDDSIRVWLDQNNHLLPFSYIP  240

Query  241  QKIRTQLENVTLHDGWQQIPGFLILRTTLHGPGWSLVTLYPYGNLHNRILKIILQQIPFT  300
            QKIRTQLENVTLHDGWQQIPGFLILRTTLHGPGWSLVTLYPYGNLHNRILKIILQQIPFT
Sbjct  241  QKIRTQLENVTLHDGWQQIPGFLILRTTLHGPGWSLVTLYPYGNLHNRILKIILQQIPFT  300

Query  301  LTALVLMTSAFCWLLHRSLAKPLWRFVDVINKTATAPLSTRLPAQRLDELDSIAGAFNQL  360
            LTALVLMTSAFCWLLHRSLAKPLWRFVDVINKTATAPLSTRLPAQRLDELDSIAGAFNQL
Sbjct  301  LTALVLMTSAFCWLLHRSLAKPLWRFVDVINKTATAPLSTRLPAQRLDELDSIAGAFNQL  360

Query  361  LDTLQVQYDNLENKVAERTQALneakkraerankrkSIHLTVISHELRTPMNGVLGAIEL  420
            LDTLQVQYDNLENKVAERTQALNEAKKRAERANKRKSIHLTVISHELRTPMNGVLGAIEL
Sbjct  361  LDTLQVQYDNLENKVAERTQALNEAKKRAERANKRKSIHLTVISHELRTPMNGVLGAIEL  420

Query  421  LQTTPLNIEQQGLADTARNCTLSLLAIINNLLDFSCIESGHFTLHMEETALLPLLDQAMQ  480
            LQTTPLNIEQQGLADTARNCTLSLLAIINNLLDFS IESGHFTLHMEETALLPLLDQAMQ
Sbjct  421  LQTTPLNIEQQGLADTARNCTLSLLAIINNLLDFSRIESGHFTLHMEETALLPLLDQAMQ  480

Query  481  TIQGPAQSKKLSLRTFVGQHVPLYFHTDSIRLRQILVNLLGNAVKFTETGGIRLTVKRHE  540
            TIQGPAQSKKLSLRTFVGQHVPLYFHTDSIRLRQILVNLLGNAVKFTETGGIRLTVKRHE
Sbjct  481  TIQGPAQSKKLSLRTFVGQHVPLYFHTDSIRLRQILVNLLGNAVKFTETGGIRLTVKRHE  540

Query  541  EQLIFLVSDSGKGIEIQQQSQIFTAFYQADTNSQGTGIGLTIASSLAKMMGGNLTLKSVP  600
            EQLIFLVSDSGKGIEIQQQSQIFTAFYQADTNSQGTGIGLTIASSLAKMMGGNLTLKSVP
Sbjct  541  EQLIFLVSDSGKGIEIQQQSQIFTAFYQADTNSQGTGIGLTIASSLAKMMGGNLTLKSVP  600

Query  601  GVGTCVSLVLPLQEYQPPQPIKGTLSAPFCLHRQLACWGIRGEPPHQQNALLNAELLYFP  660
            GVGTCVSLVLPLQEYQPPQPIKGTLSAPFCLHRQLACWGIRGEPPHQQNALLNAELLYF+
Sbjct  601  GVGTCVSLVLPLQEYQPPQPIKGTLSAPFCLHRQLACWGIRGEPPHQQNALLNAELLYFS  660

Query  661  GKLYDLAQQLILCTpnipvinnllppWQLQILLVDDADINRDIIGKMLVSLGQHVTVAAS  720
            GKLYDLAQQLILCTPN+PVINNLLPPWQLQILLVDDADINRDIIGKMLVSLGQHVT+AAS
Sbjct  661  GKLYDLAQQLILCTPNMPVINNLLPPWQLQILLVDDADINRDIIGKMLVSLGQHVTIAAS  720

Query  721  SNEALTLSQQQRFDLVLIDIRMPEIDGIECVQLWHDEPNNLDPDCMFVALSASVATEDIH  780
            SNEALTLSQQQRFDLVLIDIRMPEIDGIECV+LWHDEPNNLDPDCMFVALSASVATEDIH
Sbjct  721  SNEALTLSQQQRFDLVLIDIRMPEIDGIECVRLWHDEPNNLDPDCMFVALSASVATEDIH  780

Query  781  RCKKNGIHHYITKPVTLATLARYISIAAEYQLLRNIELQEQDP  823
            RCKKNGIHHYITKPVTLATLARYISIAAEYQLLRNIELQEQDP
Sbjct  781  RCKKNGIHHYITKPVTLATLARYISIAAEYQLLRNIELQEQDP  823

36) ssrA in NC_016831


> U51927|1|G1|1498305|AAC44299.1|Salmonella_enterica_subsp._enterica_serovar_Typhimurium_LT2|-|1..2468|spiR|-|SpiR
Length=823

 Score = 1230 bits (4664),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 817/823 (99%), Positives = 821/823 (99%), Gaps = 0/823 (0%)

Query  1    MNLLNLKNTLQTslvirltflfllttiiiwllsvltAAYISMVQKRQHIIEDLSVLSEMN  60
            MNLLNLKNTLQTSLVIRLTFLFLLTTIIIWLLSVLTAAYISMVQKRQHIIEDLSVLSEMN
Sbjct  1    MNLLNLKNTLQTSLVIRLTFLFLLTTIIIWLLSVLTAAYISMVQKRQHIIEDLSVLSEMN  60

Query  61   IVLSNQRFEEAERDAKNLMYQCSLATEIHHNDIFPEVSRHLSVGPSNCTPTLNGEKHRLF  120
            IVLSNQRFEEAERDAKNLMYQCSLATEIHHNDIFPEVSRHLSVGPSNCTPTLNGEKHRLF
Sbjct  61   IVLSNQRFEEAERDAKNLMYQCSLATEIHHNDIFPEVSRHLSVGPSNCTPTLNGEKHRLF  120

Query  121  LQSSDIDENSFRRDSFILNHKNEISLLSTDNPSDYSTLQPLTRKSFPLYPTHAGFYWSEP  180
            LQSSDIDENSFRRDSFILNHKNEISLLSTDNPSDYSTLQPLTRKSFPLYPTHAGFYWSEP
Sbjct  121  LQSSDIDENSFRRDSFILNHKNEISLLSTDNPSDYSTLQPLTRKSFPLYPTHAGFYWSEP  180

Query  181  EYINGKGWHASVAVADQQGVFFGVTVKLPDLITKSHLPLDDSIRVWLDQNNHLLPFSYIP  240
            EYINGKGWHASVAVADQQGVFF VTVKLPDLITKSHLPLDDSIRVWLDQNNHLLPFSYIP
Sbjct  181  EYINGKGWHASVAVADQQGVFFEVTVKLPDLITKSHLPLDDSIRVWLDQNNHLLPFSYIP  240

Query  241  QKIRTQLENVTLHDGWQQIPGFLILRTTLHGPGWSLVTLYPYGNLHNRILKIILQQIPFT  300
            QKIRTQLENVTLHDGWQQIPGFLILRTTLHGPGWSLVTLYPYGNLHNRILKIILQQIPFT
Sbjct  241  QKIRTQLENVTLHDGWQQIPGFLILRTTLHGPGWSLVTLYPYGNLHNRILKIILQQIPFT  300

Query  301  LTALVLMTSAFCWLLHRSLAKPLWRFVDVINKTATAPLSTRLPAQRLDELDSIAGAFNQL  360
            LTALVLMTSAFCWLLHRSLAKPLWRFVDVINKTATAPLSTRLPAQRLDELDSIAGAFNQL
Sbjct  301  LTALVLMTSAFCWLLHRSLAKPLWRFVDVINKTATAPLSTRLPAQRLDELDSIAGAFNQL  360

Query  361  LDTLQVQYDNLENKVAERTQALneakkraerankrkSIHLTVISHELRTPMNGVLGAIEL  420
            LDTLQVQYDNLENKVAERTQALNEAKKRAERANKRKSIHLTVISHELRTPMNGVLGAIEL
Sbjct  361  LDTLQVQYDNLENKVAERTQALNEAKKRAERANKRKSIHLTVISHELRTPMNGVLGAIEL  420

Query  421  LQTTPLNIEQQGLADTARNCTLSLLAIINNLLDFSCIESGHFTLHMEETALLPLLDQAMQ  480
            LQTTPLNIEQQGLADTARNCTLSLLAIINNLLDFS IESGHFTLHMEETALLPLLDQAMQ
Sbjct  421  LQTTPLNIEQQGLADTARNCTLSLLAIINNLLDFSRIESGHFTLHMEETALLPLLDQAMQ  480

Query  481  TIQGPAQSKKLSLRTFVGQHVPLYFHTDSIRLRQILVNLLGNAVKFTETGGIRLTVKRHE  540
            TIQGPAQSKKLSLRTFVGQHVPLYFHTDSIRLRQILVNLLGNAVKFTETGGIRLTVKRHE
Sbjct  481  TIQGPAQSKKLSLRTFVGQHVPLYFHTDSIRLRQILVNLLGNAVKFTETGGIRLTVKRHE  540

Query  541  EQLIFLVSDSGKGIEIQQQSQIFTAFYQADTNSQGTGIGLTIASSLAKMMGGNLTLKSVP  600
            EQLIFLVSDSGKGIEIQQQSQIFTAFYQADTNSQGTGIGLTIASSLAKMMGGNLTLKSVP
Sbjct  541  EQLIFLVSDSGKGIEIQQQSQIFTAFYQADTNSQGTGIGLTIASSLAKMMGGNLTLKSVP  600

Query  601  GVGTCVSLVLPLQEYQPPQPIKGTLSAPFCLHRQLACWGIRGEPPHQQNALLNAELLYFP  660
            GVGTCVSLVLPLQEYQPPQPIKGTLSAPFCLHRQLACWGIRGEPPHQQNALLNAELLYF+
Sbjct  601  GVGTCVSLVLPLQEYQPPQPIKGTLSAPFCLHRQLACWGIRGEPPHQQNALLNAELLYFS  660

Query  661  GKLYDLAQQLILCTpnipvinnllppWQLQILLVDDADINRDIIGKMLVSLGQHVTVAAS  720
            GKLYDLAQQLILCTPN+PVINNLLPPWQLQILLVDDADINRDIIGKMLVSLGQHVT+AAS
Sbjct  661  GKLYDLAQQLILCTPNMPVINNLLPPWQLQILLVDDADINRDIIGKMLVSLGQHVTIAAS  720

Query  721  SNEALTLSQQQRFDLVLIDIRMPEIDGIECVQLWHDEPNNLDPDCMFVALSASVATEDIH  780
            SNEALTLSQQQRFDLVLIDIRMPEIDGIECV+LWHDEPNNLDPDCMFVALSASVATEDIH
Sbjct  721  SNEALTLSQQQRFDLVLIDIRMPEIDGIECVRLWHDEPNNLDPDCMFVALSASVATEDIH  780

Query  781  RCKKNGIHHYITKPVTLATLARYISIAAEYQLLRNIELQEQDP  823
            RCKKNGIHHYITKPVTLATLARYISIAAEYQLLRNIELQEQDP
Sbjct  781  RCKKNGIHHYITKPVTLATLARYISIAAEYQLLRNIELQEQDP  823

37) I137_05565 in NC_021984


> U51927|1|G1|1498305|AAC44299.1|Salmonella_enterica_subsp._enterica_serovar_Typhimurium_LT2|-|1..2468|spiR|-|SpiR
Length=823

 Score = 1230 bits (4664),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 817/823 (99%), Positives = 821/823 (99%), Gaps = 0/823 (0%)

Query  1    MNLLNLKNTLQTslvirltflfllttiiiwllsvltAAYISMVQKRQHIIEDLSVLSEMN  60
            MNLLNLKNTLQTSLVIRLTFLFLLTTIIIWLLSVLTAAYISMVQKRQHIIEDLSVLSEMN
Sbjct  1    MNLLNLKNTLQTSLVIRLTFLFLLTTIIIWLLSVLTAAYISMVQKRQHIIEDLSVLSEMN  60

Query  61   IVLSNQRFEEAERDAKNLMYQCSLATEIHHNDIFPEVSRHLSVGPSNCTPTLNGEKHRLF  120
            IVLSNQRFEEAERDAKNLMYQCSLATEIHHNDIFPEVSRHLSVGPSNCTPTLNGEKHRLF
Sbjct  61   IVLSNQRFEEAERDAKNLMYQCSLATEIHHNDIFPEVSRHLSVGPSNCTPTLNGEKHRLF  120

Query  121  LQSSDIDENSFRRDSFILNHKNEISLLSTDNPSDYSTLQPLTRKSFPLYPTHAGFYWSEP  180
            LQSSDIDENSFRRDSFILNHKNEISLLSTDNPSDYSTLQPLTRKSFPLYPTHAGFYWSEP
Sbjct  121  LQSSDIDENSFRRDSFILNHKNEISLLSTDNPSDYSTLQPLTRKSFPLYPTHAGFYWSEP  180

Query  181  EYINGKGWHASVAVADQQGVFFGVTVKLPDLITKSHLPLDDSIRVWLDQNNHLLPFSYIP  240
            EYINGKGWHASVAVADQQGVFF VTVKLPDLITKSHLPLDDSIRVWLDQNNHLLPFSYIP
Sbjct  181  EYINGKGWHASVAVADQQGVFFEVTVKLPDLITKSHLPLDDSIRVWLDQNNHLLPFSYIP  240

Query  241  QKIRTQLENVTLHDGWQQIPGFLILRTTLHGPGWSLVTLYPYGNLHNRILKIILQQIPFT  300
            QKIRTQLENVTLHDGWQQIPGFLILRTTLHGPGWSLVTLYPYGNLHNRILKIILQQIPFT
Sbjct  241  QKIRTQLENVTLHDGWQQIPGFLILRTTLHGPGWSLVTLYPYGNLHNRILKIILQQIPFT  300

Query  301  LTALVLMTSAFCWLLHRSLAKPLWRFVDVINKTATAPLSTRLPAQRLDELDSIAGAFNQL  360
            LTALVLMTSAFCWLLHRSLAKPLWRFVDVINKTATAPLSTRLPAQRLDELDSIAGAFNQL
Sbjct  301  LTALVLMTSAFCWLLHRSLAKPLWRFVDVINKTATAPLSTRLPAQRLDELDSIAGAFNQL  360

Query  361  LDTLQVQYDNLENKVAERTQALneakkraerankrkSIHLTVISHELRTPMNGVLGAIEL  420
            LDTLQVQYDNLENKVAERTQALNEAKKRAERANKRKSIHLTVISHELRTPMNGVLGAIEL
Sbjct  361  LDTLQVQYDNLENKVAERTQALNEAKKRAERANKRKSIHLTVISHELRTPMNGVLGAIEL  420

Query  421  LQTTPLNIEQQGLADTARNCTLSLLAIINNLLDFSCIESGHFTLHMEETALLPLLDQAMQ  480
            LQTTPLNIEQQGLADTARNCTLSLLAIINNLLDFS IESGHFTLHMEETALLPLLDQAMQ
Sbjct  421  LQTTPLNIEQQGLADTARNCTLSLLAIINNLLDFSRIESGHFTLHMEETALLPLLDQAMQ  480

Query  481  TIQGPAQSKKLSLRTFVGQHVPLYFHTDSIRLRQILVNLLGNAVKFTETGGIRLTVKRHE  540
            TIQGPAQSKKLSLRTFVGQHVPLYFHTDSIRLRQILVNLLGNAVKFTETGGIRLTVKRHE
Sbjct  481  TIQGPAQSKKLSLRTFVGQHVPLYFHTDSIRLRQILVNLLGNAVKFTETGGIRLTVKRHE  540

Query  541  EQLIFLVSDSGKGIEIQQQSQIFTAFYQADTNSQGTGIGLTIASSLAKMMGGNLTLKSVP  600
            EQLIFLVSDSGKGIEIQQQSQIFTAFYQADTNSQGTGIGLTIASSLAKMMGGNLTLKSVP
Sbjct  541  EQLIFLVSDSGKGIEIQQQSQIFTAFYQADTNSQGTGIGLTIASSLAKMMGGNLTLKSVP  600

Query  601  GVGTCVSLVLPLQEYQPPQPIKGTLSAPFCLHRQLACWGIRGEPPHQQNALLNAELLYFP  660
            GVGTCVSLVLPLQEYQPPQPIKGTLSAPFCLHRQLACWGIRGEPPHQQNALLNAELLYF+
Sbjct  601  GVGTCVSLVLPLQEYQPPQPIKGTLSAPFCLHRQLACWGIRGEPPHQQNALLNAELLYFS  660

Query  661  GKLYDLAQQLILCTpnipvinnllppWQLQILLVDDADINRDIIGKMLVSLGQHVTVAAS  720
            GKLYDLAQQLILCTPN+PVINNLLPPWQLQILLVDDADINRDIIGKMLVSLGQHVT+AAS
Sbjct  661  GKLYDLAQQLILCTPNMPVINNLLPPWQLQILLVDDADINRDIIGKMLVSLGQHVTIAAS  720

Query  721  SNEALTLSQQQRFDLVLIDIRMPEIDGIECVQLWHDEPNNLDPDCMFVALSASVATEDIH  780
            SNEALTLSQQQRFDLVLIDIRMPEIDGIECV+LWHDEPNNLDPDCMFVALSASVATEDIH
Sbjct  721  SNEALTLSQQQRFDLVLIDIRMPEIDGIECVRLWHDEPNNLDPDCMFVALSASVATEDIH  780

Query  781  RCKKNGIHHYITKPVTLATLARYISIAAEYQLLRNIELQEQDP  823
            RCKKNGIHHYITKPVTLATLARYISIAAEYQLLRNIELQEQDP
Sbjct  781  RCKKNGIHHYITKPVTLATLARYISIAAEYQLLRNIELQEQDP  823

38) ssrA in NC_011274


> U51927|1|G1|1498305|AAC44299.1|Salmonella_enterica_subsp._enterica_serovar_Typhimurium_LT2|-|1..2468|spiR|-|SpiR
Length=823

 Score = 1227 bits (4656),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 816/823 (99%), Positives = 821/823 (99%), Gaps = 0/823 (0%)

Query  1    MNLLNLKNTLQTslvirltflfllttiiiwllsvltAAYISMVQKRQHIIEDLSVLSEMN  60
            MNLLNLKNTLQTSLVIRLTFLFLLTTIIIWLLSVLTAAYISMVQKRQHIIEDLSVLSEMN
Sbjct  1    MNLLNLKNTLQTSLVIRLTFLFLLTTIIIWLLSVLTAAYISMVQKRQHIIEDLSVLSEMN  60

Query  61   IVLSNQRFEEAERDAKNLMYQCSLATEIHHNDIFPEVSRHLSVGPSNCTPTLNGEKHRLF  120
            IVLSNQRFEEAERDAKNLMYQCSLATEIHHNDIFPEVSRHLSVGPSNCTPTLNGEKHRLF
Sbjct  61   IVLSNQRFEEAERDAKNLMYQCSLATEIHHNDIFPEVSRHLSVGPSNCTPTLNGEKHRLF  120

Query  121  LQSSDIDENSFRRDSFILNHKNEISLLSTDNPSDYSTLQPLTRKSFPLYPTHAGFYWSEP  180
            LQSSDIDENSFRRDSFILNHKNEISLLSTDNPSDYSTLQPLTRKSFPLYPTHAGFYWSEP
Sbjct  121  LQSSDIDENSFRRDSFILNHKNEISLLSTDNPSDYSTLQPLTRKSFPLYPTHAGFYWSEP  180

Query  181  EYINGKGWHASVAVADQQGVFFGVTVKLPDLITKSHLPLDDSIRVWLDQNNHLLPFSYIP  240
            EYINGKGWHASVAVADQQGVFF VTVKLPDLITKSHLPLDDSIRVWLDQNNHLLPFSYIP
Sbjct  181  EYINGKGWHASVAVADQQGVFFEVTVKLPDLITKSHLPLDDSIRVWLDQNNHLLPFSYIP  240

Query  241  QKIRTQLENVTLHDGWQQIPGFLILRTTLHGPGWSLVTLYPYGNLHNRILKIILQQIPFT  300
            QKIRTQLENVTLHDGWQQIPGFLILRTTLHGPGWSLVTLYPYGNLHNRILKIILQQIPFT
Sbjct  241  QKIRTQLENVTLHDGWQQIPGFLILRTTLHGPGWSLVTLYPYGNLHNRILKIILQQIPFT  300

Query  301  LTALVLMTSAFCWLLHRSLAKPLWHFVDVINKTATAPLSTRLPAQRLDELDSIAGAFNQL  360
            LTALVLMTSAFCWLLHRSLAKPLW+FVDVINKTATAPLSTRLPAQRLDELDSIAGAFNQL
Sbjct  301  LTALVLMTSAFCWLLHRSLAKPLWRFVDVINKTATAPLSTRLPAQRLDELDSIAGAFNQL  360

Query  361  LDTLQVQYDNLENKVAERTQALneakkraerankrkSIHLTVISHELRTPMNGVLGAIEL  420
            LDTLQVQYDNLENKVAERTQALNEAKKRAERANKRKSIHLTVISHELRTPMNGVLGAIEL
Sbjct  361  LDTLQVQYDNLENKVAERTQALNEAKKRAERANKRKSIHLTVISHELRTPMNGVLGAIEL  420

Query  421  LQTTPLNIEQQGLADTARNCTLSLLAIINNLLDFSCIESGHFTLHMEETALLPLLDQAMQ  480
            LQTTPLNIEQQGLADTARNCTLSLLAIINNLLDFS IESGHFTLHMEETALLPLLDQAMQ
Sbjct  421  LQTTPLNIEQQGLADTARNCTLSLLAIINNLLDFSRIESGHFTLHMEETALLPLLDQAMQ  480

Query  481  TIQGPAQSKKLSLRTFVGQHVPLYFHTDSIRLRQILVNLLGNAVKFTETGGIRLTVKRHE  540
            TIQGPAQSKKLSLRTFVGQHVPLYFHTDSIRLRQILVNLLGNAVKFTETGGIRLTVKRHE
Sbjct  481  TIQGPAQSKKLSLRTFVGQHVPLYFHTDSIRLRQILVNLLGNAVKFTETGGIRLTVKRHE  540

Query  541  EQLIFLVSDSGKGIEIQQQSQIFTAFYQADTNSQGTGIGLTIASSLAKMMGGNLTLKSVP  600
            EQLIFLVSDSGKGIEIQQQSQIFTAFYQADTNSQGTGIGLTIASSLAKMMGGNLTLKSVP
Sbjct  541  EQLIFLVSDSGKGIEIQQQSQIFTAFYQADTNSQGTGIGLTIASSLAKMMGGNLTLKSVP  600

Query  601  GVGTCVSLVLPLQEYQPPQPIKGTLSAPFCLHRQLACWGIRGEPPHQQNALLNAELLYFP  660
            GVGTCVSLVLPLQEYQPPQPIKGTLSAPFCLHRQLACWGIRGEPPHQQNALLNAELLYF+
Sbjct  601  GVGTCVSLVLPLQEYQPPQPIKGTLSAPFCLHRQLACWGIRGEPPHQQNALLNAELLYFS  660

Query  661  GKLYDLAQQLILCTpnipvinnllppWQLQILLVDDADINRDIIGKMLVSLGQHVTVAAS  720
            GKLYDLAQQLILCTPN+PVINNLLPPWQLQILLVDDADINRDIIGKMLVSLGQHVT+AAS
Sbjct  661  GKLYDLAQQLILCTPNMPVINNLLPPWQLQILLVDDADINRDIIGKMLVSLGQHVTIAAS  720

Query  721  SNEALTLSQQQRFDLVLIDIRMPEIDGIECVQLWHDEPNNLDPDCMFVALSASVATEDIH  780
            SNEALTLSQQQRFDLVLIDIRMPEIDGIECV+LWHDEPNNLDPDCMFVALSASVATEDIH
Sbjct  721  SNEALTLSQQQRFDLVLIDIRMPEIDGIECVRLWHDEPNNLDPDCMFVALSASVATEDIH  780

Query  781  RCKKNGIHHYITKPVTLATLARYISIAAEYQLLRNIELQEQDP  823
            RCKKNGIHHYITKPVTLATLARYISIAAEYQLLRNIELQEQDP
Sbjct  781  RCKKNGIHHYITKPVTLATLARYISIAAEYQLLRNIELQEQDP  823

39) SARI_01589 in NC_010067


> U51927|1|G1|1498305|AAC44299.1|Salmonella_enterica_subsp._enterica_serovar_Typhimurium_LT2|-|1..2468|spiR|-|SpiR
Length=823

 Score = 1114 bits (4224),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 704/823 (86%), Positives = 777/823 (95%), Gaps = 0/823 (0%)

Query  17   MNLLNLKNTLQtslvtrltflfllttiiiwllsvFAAAYISMAQNRKHIMEDLSTISEMN  76
            MNLLNLKNTLQTSLV RLTFLFLLTTIIIWLLSV++AAYISM Q+R+HI+EDLS +SEMN
Sbjct  1    MNLLNLKNTLQTSLVIRLTFLFLLTTIIIWLLSVLTAAYISMVQKRQHIIEDLSVLSEMN  60

Query  77   IVLNNQRFEEAERDAQKLMYQCSFATVIRHNNTFPGVSRHLPVGPPNCTPTLNRDKPRIF  136
            IVL+NQRFEEAERDA++LMYQCS+AT I+HN+ FP VSRHL+VGP+NCTPTLN +K R+F
Sbjct  61   IVLSNQRFEEAERDAKNLMYQCSLATEIHHNDIFPEVSRHLSVGPSNCTPTLNGEKHRLF  120

Query  137  PQPYDIDEENNHRDHFILNHKNEISLLPANAPSGYSTLQLMTLRRLPLYPNHAGFYWSKP  196
             Q+ DIDE++ +RD FILNHKNEISLL+++ PS+YSTLQ +T + +PLYP HAGFYWS P
Sbjct  121  LQSSDIDENSFRRDSFILNHKNEISLLSTDNPSDYSTLQPLTRKSFPLYPTHAGFYWSEP  180

Query  197  EYINGKGWNVSVAVTDQHGVFFGVTVDLHNLITNNHPQLDDSIHVWLDQNNHLLPFSYAS  256
            EYINGKGW+ SVAV+DQ+GVFF VTV L +LIT++H  LDDSI+VWLDQNNHLLPFSY +
Sbjct  181  EYINGKGWHASVAVADQQGVFFEVTVKLPDLITKSHLPLDDSIRVWLDQNNHLLPFSYIP  240

Query  257  QKIRTRLENVTLHDGWQQIPGFLILRTTLHGPGWSQVILYPYGNLSSRILKTIIQQIPFT  316
            QKIRT+LENVTLHDGWQQIPGFLILRTTLHGPGWS V LYPYGNL +RILK I+QQIPFT
Sbjct  241  QKIRTQLENVTLHDGWQQIPGFLILRTTLHGPGWSLVTLYPYGNLHNRILKIILQQIPFT  300

Query  317  LTALVLMTSTFCWLLHSLLAKPLWHFVDAINKTATEPLSTRLPEERQDELGSIAYAFNQL  376
            LTALVLMTS+FCWLLH  LAKPLW+FVD INKTAT PLSTRLP +R DEL+SIA AFNQL
Sbjct  301  LTALVLMTSAFCWLLHRSLAKPLWRFVDVINKTATAPLSTRLPAQRLDELDSIAGAFNQL  360

Query  377  LNTLQVQYDNLESKVAERTHALNEAKKRAEQANKRKSIHLTVISHELRTPMNGVLGAIEL  436
            L+TLQVQYDNLE+KVAERT+ALNEAKKRAE+ANKRKSIHLTVISHELRTPMNGVLGAIEL
Sbjct  361  LDTLQVQYDNLENKVAERTQALNEAKKRAERANKRKSIHLTVISHELRTPMNGVLGAIEL  420

Query  437  LQTTPLNIKQQGLADTARYCtlslltlinnllDFSRIESGHFTLHMEETALLPLLDQTMQ  496
            LQTTPLNI QQGLADTAR CTLSLL++INNLLDFSRIESGHFTLHMEETALLPLLDQ+MQ
Sbjct  421  LQTTPLNIEQQGLADTARNCTLSLLAIINNLLDFSRIESGHFTLHMEETALLPLLDQAMQ  480

Query  497  TIQGPAQSKKLSLRTFVGQHVPLYFHTDAIRLRQILVNLLGNAVKFTETGGIRLTVKRHA  556
            TIQGPAQSKKLSLRTFVGQHVPLYFHTD+IRLRQILVNLLGNAVKFTETGGIRLTVKRH 
Sbjct  481  TIQGPAQSKKLSLRTFVGQHVPLYFHTDSIRLRQILVNLLGNAVKFTETGGIRLTVKRHE  540

Query  557  EQLIFLVSDSGKGIEIQQQPKIFTAFYQADTNSQGTGIGLTIASSLAKMMGGELKIDSIP  616
            EQLIFLVSDSGKGIEIQQQ++IFTAFYQADTNSQGTGIGLTIASSLAKMMGG+L + S+P
Sbjct  541  EQLIFLVSDSGKGIEIQQQSQIFTAFYQADTNSQGTGIGLTIASSLAKMMGGNLTLKSVP  600

Query  617  GVGTCISLVLPLQEYQPPQPINGTLSAPICLHRQLACWGIRGELSHQQNALFNAELLYFP  676
            GVGTC+SLVLPLQEYQPPQPI+GTLSAP+CLHRQLACWGIRGE +HQQNAL+NAELLYF+
Sbjct  601  GVGTCVSLVLPLQEYQPPQPIKGTLSAPFCLHRQLACWGIRGEPPHQQNALLNAELLYFS  660

Query  677  GKLYNLAQQLILCTPNTPDINKLVQPWQLQILLVDDADINRDIIGRMLVSLGQNVTIAAS  736
            GKLY+LAQQLILCTPN P IN+L+ PWQLQILLVDDADINRDIIG+MLVSLGQ+VTIAAS
Sbjct  661  GKLYDLAQQLILCTPNMPVINNLLPPWQLQILLVDDADINRDIIGKMLVSLGQHVTIAAS  720

Query  737  SNEALTLSQQQRFDLVLMDIRMPEIDGIECVQLWHDNPANLDPDCMIVALSASVASEDIN  796
            SNEALTLSQQQRFDLVL+DIRMPEIDGIECV+LWHD+P NLDPDCM+VALSASVA+EDI+
Sbjct  721  SNEALTLSQQQRFDLVLIDIRMPEIDGIECVRLWHDEPNNLDPDCMFVALSASVATEDIH  780

Query  797  RCKKHGIHHYITKPVTLATLARYISIAAEYQLLRNIELQEQDP  839
            RCKK+GIHHYITKPVTLATLARYISIAAEYQLLRNIELQEQDP
Sbjct  781  RCKKNGIHHYITKPVTLATLARYISIAAEYQLLRNIELQEQDP  823

40) SG1280 in NC_007712


> U51927|1|G1|1498305|AAC44299.1|Salmonella_enterica_subsp._enterica_serovar_Typhimurium_LT2|-|1..2468|spiR|-|SpiR
Length=823

 Score =  670 bits (2532),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 416/800 (52%), Positives = 611/800 (77%), Gaps = 13/800 (1%)

Query  30   VVAATYVSLNLTRHRILENLAHFSSLRMELTNHRFVGAERDAQALAHRYKLYHATPLV-M  88
            V++A+Y+S+   R++I+E+L+ +S + + L+N+RF  AERDA+ L  +  L        +
Sbjct  34   VLTAAYISMVQKRQHIIEDLSVLSEMNIVLSNQRFEEAERDAKNLMYQCSLATEIHHNDI  93

Query  89   LPDEKSESRYFPFNQENCIPPGKRERDRTFIQVFGTAGQTYYLDSFILDRRYGVSLLPPR  148
            +P+    SR ++    NC P  + E++R F+Q  +   +++  DSFIL+++  +SLL+  
Sbjct  94   FPEV---SRHLSVGPSNCTPTLNGEKHRLFLQSSDIDENSFRRDSFILNHKNEISLLST-  149

Query  149  DHTPDYFIRQQVELNAFPHQPAHDNLFWGKPEFLPGTGWSVAVAAAAPNEVLTGLTVKLN  208
            D+ +DY   Q +  ++FP  P+H  ++W+ PE++ G GW  +VA A  + V+  +TVKL 
Sbjct  150  DNPSDYSTLQPLTRKSFPLYPTHAGFYWSEPEYINGKGWHASVAVADQQGVFFEVTVKLP  209

Query  209  DLLSYGHPVLEADINLWLDSDNRILPFSRVSAQTADRLQPMLQQLKLKEGWQKVPGYMLL  268
            DL++ +H  L+  I +WLD +N++LPFS +    +++++  L+++ L +GWQ++PG+++L
Sbjct  210  DLITKSHLPLDDSIRVWLDQNNHLLPFSYI----PQKIRTQLENVTLHDGWQQIPGFLIL  265

Query  269  RTQLKGPGWQQVILFPRNGGMKRTLDIIAAQLPFAvvtllvlvvtlfwllHRYLARPLWD  328
            RT L GPGW  V L+P     +R L II  Q+PF++ +L+++  ++ WLLHR LA+PLW 
Sbjct  266  RTTLHGPGWSLVTLYPYGNLHNRILKIILQQIPFTLTALVLMTSAFCWLLHRSLAKPLWR  325

Query  329  FVAIIGKTGPHSLSVRLPENRHDELGSIAHAYNLLLDTLRTQYDNLENVVAERTRALNEA  388
            FV +I KT+  +LS RLP +R DEL+SIA A+N LLDTL+ QYDNLEN VAERT+ALNEA
Sbjct  326  FVDVINKTATAPLSTRLPAQRLDELDSIAGAFNQLLDTLQVQYDNLENKVAERTQALNEA  385

Query  389  KQQAERANKRKSSHLTTISHELRTPLSGSLGALELLQMTTLTDKQFQLADTARQCVFSLL  448
            K++AERANKRKS HLT ISHELRTP++G LGA+ELLQ T L   Q  LADTAR+C +SLL
Sbjct  386  KKRAERANKRKSIHLTVISHELRTPMNGVLGAIELLQTTPLNIEQQGLADTARNCTLSLL  445

Query  449  SIINNLLDFSRIESGQLSLHIEETPLLPILDQAMHTIQGPGQSKGLTLRTFVGKQVPLYL  508
            +IINNLLDFSRIESG+++LH+EET+LLP+LDQAM+TIQGP+QSK L+LRTFVG++VPLY+
Sbjct  446  AIINNLLDFSRIESGHFTLHMEETALLPLLDQAMQTIQGPAQSKKLSLRTFVGQHVPLYF  505

Query  509  DIDGMRLRQILVNLLGNALKFTQSGGIFLSVKRRDQQLIFAVNDSGQGIAPEDQEKVFAP  568
            + D++RLRQILVNLLGNA+KFT++GGI L+VKR+++QLIF V+DSG+GI  ++Q ++F++
Sbjct  506  HTDSIRLRQILVNLLGNAVKFTETGGIRLTVKRHEEQLIFLVSDSGKGIEIQQQSQIFTA  565

Query  569  FFQSEGTMQGTGLGLAIAANLAKLMGGSLTLSSTPGLGTCMSFIMPLNDHREphplggql  628
            F+Q++   QGTG+GL+IA++LAK+MGG+LTL S PG+GTC+S+++PL++ + P+P+ G L
Sbjct  566  FYQADTNSQGTGIGLTIASSLAKMMGGNLTLKSVPGVGTCVSLVLPLQEYQPPQPIKGTL  625

Query  629  aaplalhRQLAAWGISCDPSLEECPFSAAELRFLPGKLYDRVIRAF--AGDLPETSCNIP  686
            +AP+ LHRQLA WGI  +P+ ++ ++  AEL +++GKLYD   + +  + ++P  +  +P
Sbjct  626  SAPFCLHRQLACWGIRGEPPHQQNALLNAELLYFSGKLYDLAQQLILCTPNMPVINNLLP  685

Query  687  VQPWRLRILLVDDAVINREIIGMMLHSLGQDVTLACDGARALALGRQQHFDLVLMDVRMP  746
              PW+L+ILLVDDA INR+IIG ML SLGQ+VT+A  +  AL+L++QQ+FDLVL+D+RMP
Sbjct  686  --PWQLQILLVDDADINRDIIGKMLVSLGQHVTIAASSNEALTLSQQQRFDLVLIDIRMP  743

Query  747  DMDGTACARLWREDAENRDRDCMITALSANTAPEDIARCKEAGMRHYLTKPVTLAQLADG  806
            ++DG  C RLW+++++N D DCM+ ALSA+ A EDI RCK  G++HY+TKPVTLA LA  
Sbjct  744  EIDGIECVRLWHDEPNNLDPDCMFVALSASVATEDIHRCKKNGIHHYITKPVTLATLARY  803

Query  807  ISLAAEYQLQRDIPLQEQDS  826
            IS+AAEYQL R+I LQEQD+
Sbjct  804  ISIAAEYQLLRNIELQEQDP  823

41) PAU_03782 in NC_012962


> U51927|1|G1|1498305|AAC44299.1|Salmonella_enterica_subsp._enterica_serovar_Typhimurium_LT2|-|1..2468|spiR|-|SpiR
Length=823

 Score =  565 bits (2133),  Expect = 4e-162, Method: Compositional matrix adjust.
 Identities = 368/801 (46%), Positives = 572/801 (72%), Gaps = 13/801 (1%)

Query  27   VIATAFFSFRHAHQHMMDELSHLATLRADLSNHRFEDAEKDAQELARRYDAYYEKYENDK  86
            V+++A++S  + +QH++++LS L+ +   LSN+RFE+AE+DA++L   Y+       +++
Sbjct  34   VLTAAYISMVQKRQHIIEDLSVLSEMNIVLSNQRFEEAERDAKNL--MYQCSLATEIHHN  91

Query  87   NITSNTDSKYLPINGNICQPDHEISQDNWFIqaygaagqayyLDSFIFKRSQGISIYPPE  146
            +I ++  S+ L++  + C P  +  ++  F+Q+ +   +++  DSFI+++ + IS+ + +
Sbjct  92   DIFPEV-SRHLSVGPSNCTPTLNGEKHRLFLQSSDIDENSFRRDSFILNHKNEISLLSTD  150

Query  147  KISDDYFVKRCLELANFPMSPNHDNIYWGQPEHIPGSGWSISVAASDKMGRLTGYAIKFN  206
            + + DY   + L   +FP+ P H  +YW++PE I G GW  SVA +D+ G +   ++K+ 
Sbjct  151  N-PSDYSTLQPLTRKSFPLYPTHAGFYWSEPEYINGKGWHASVAVADQQGVFFEVTVKLP  209

Query  207  DLLSYGQAVTNYDIDLWLDSNQQLLPFFKGKLPQDQEQHILALLKKVKLHDGWQYIPGYQ  266
            DL++ ++   +  I +WLD N++LLPF  + +PQ     I + L +V LHDGWQ IPG+ 
Sbjct  210  DLITKSHLPLDDSIRVWLDQNNHLLPF--SYIPQK----IRTQLENVTLHDGWQQIPGFL  263

Query  267  VLRIQLKGPGWQQLVLYPTRGLFEEIIDQAIIQLPFALVILFMITLTLFWMLHHYLAKPL  326
            +LR  L GPGW  + LYP   L + I+   + Q+PF+L  L ++T ++ W+LH+ LAKPL
Sbjct  264  ILRTTLHGPGWSLVTLYPYGNLHNRILKIILQQIPFTLTALVLMTSAFCWLLHRSLAKPL  323

Query  327  WQFVDIIDKTGPSALDVRLPENRRDELGQIARAYNALLDTLNQQYSTLENKVAERTRALT  386
            W+FVD+I+KT+ ++L  RLP +R DEL+ IA A+N LLDTL+ QY  LENKVAERT+AL 
Sbjct  324  WRFVDVINKTATAPLSTRLPAQRLDELDSIAGAFNQLLDTLQVQYDNLENKVAERTQALN  383

Query  387  EAKQQAELANKRKSRHLTTISHELRTPLSGTLGALELLKTSEMDNEQLQLAETAHQCTLS  446
            EAK++AE ANKRKS HLT ISHELRTP++G LGA+ELL+T+ ++ EQ  LA+TA++CTLS
Sbjct  384  EAKKRAERANKRKSIHLTVISHELRTPMNGVLGAIELLQTTPLNIEQQGLADTARNCTLS  443

Query  447  LLFIINKLLDFSRIEAGQVELQYATCQLLPLLDQSMATIQGMAHNKRLTLETFVAADVPQ  506
            LL IIN+LLDFSRIE+G+  L+     LLPLLDQ+M TIQG A++K+L+L TFV+ +VP 
Sbjct  444  LLAIINNLLDFSRIESGHFTLHMEETALLPLLDQAMQTIQGPAQSKKLSLRTFVGQHVPL  503

Query  507  SLVLDAIRVKQILVNLLGNACKFTDDGGICLTVTRSDNMLIFDVTDSGCGVAPENISSVF  566
             +  D+IR++QILVNLLGNA KFT+ GGI LTV R ++ LIF V+DSG G+  ++ S +F
Sbjct  504  YFHTDSIRLRQILVNLLGNAVKFTETGGIRLTVKRHEEQLIFLVSDSGKGIEIQQQSQIF  563

Query  567  NPFYQVQEHaqgtglglaiaatlaKMMGGSLKFNSAFGLGTSVVFQLPLTDFIEPELLQG  626
             +FYQ + ++QGTG+GL+IA++LAKMMGG+L ++S  G+GT V + LPL ++  P+ ++G
Sbjct  564  TAFYQADTNSQGTGIGLTIASSLAKMMGGNLTLKSVPGVGTCVSLVLPLQEYQPPQPIKG  623

Query  627  EVDAPLALHRQLMTWGLTCLSKQHYGELSANDLRFLPGRLRDIVER-QLSGAPSPVQDNV  685
             + AP+ LHRQL  WG+   + ++   L   +L +++G+L D+ ++  L  +  PV +N+
Sbjct  624  TLSAPFCLHRQLACWGIRGEPPHQQNALLNAELLYFSGKLYDLAQQLILCTPNMPVINNL  683

Query  686  PLQPWRMRVLLVDDAETNRDIIGMMLTRLGQEVQYAKDGTEALLLGKRYRFDLVLMDILM  745
             L PW++++LLVDDA+ NRDIIG ML  LGQ+V  A  + EAL L+++ RFDLVL+DI M
Sbjct  684  -LPPWQLQILLVDDADINRDIIGKMLVSLGQHVTIAASSNEALTLSQQQRFDLVLIDIRM  742

Query  746  PGQCDGLETTRLWRIDSDNQDSECMIVALTANTVAEEKERAAQAGMNDYISKPVTINQLA  805
            P + DG+E  RLW+ +++N D++CM+VAL+A+  +E+ +R  + G+++YI+KPVT+  LA
Sbjct  743  P-EIDGIECVRLWHDEPNNLDPDCMFVALSASVATEDIHRCKKNGIHHYITKPVTLATLA  801

Query  806  QILEMTAEYQLRRDIDLMVQQ  826
            + + ++AEYQL R+I+L  Q+
Sbjct  802  RYISIAAEYQLLRNIELQEQD  822

42) A1122_03865 in NC_017168


> U51927|1|G1|1498305|AAC44299.1|Salmonella_enterica_subsp._enterica_serovar_Typhimurium_LT2|-|1..2468|spiR|-|SpiR
Length=823

 Score =  509 bits (1919),  Expect = 3e-145, Method: Compositional matrix adjust.
 Identities = 380/822 (47%), Positives = 570/822 (70%), Gaps = 22/822 (2%)

Query  5    SSLVTRLTLLMGVTLTVIWLILIATTAFFSYENTRQILINELTHMASMRADLSNHQFEGA  64
            +SLV RLT+L  +T  +IWL+ + T+A++S  + RQ +I++L+ ++ M   LSN++FE A
Sbjct  12   TSLVIRLTFLFLLTTIIIWLLSVLTAAYISMVQKRQHIIEDLSVLSEMNIVLSNQRFEEA  71

Query  65   ERDAASLI---SRRESLQSTSPLPEISIKHYDSYYIPFNLDSCN--INQHKNDLWIIQAY  119
            ERDA +L+   S    ++    +PE+S +H     ++    +C   +N +K+ L ++Q+ 
Sbjct  72   ERDAKNLMYQCSLATEIHHNDIFPEVS-RH-----LSVGPSNCTPTLNGEKHRL-FLQSS  124

Query  120  GTAGQTYYLDSFIIKQKEGIVLFPPQKSSSDYLNQRRKDLLLLPKFPTHNNIYWGAPTYT  179
            +   +++  DSFI+++K+ I L++ +++S DY   +      +P +PTH  +YW+ P Y 
Sbjct  125  DIDENSFRRDSFILNHKNEISLLSTDNPS-DYSTLQPLTRKSFPLYPTHAGFYWSEPEYI  183

Query  180  PQGGWHVSVAVCDKVGTLAGFALKLNDLIAYNHPVEQRDINLLLDKNGELLPISQQATSS  239
               GWH SVAV D+ G +   ++KL DLI+ +H   +  I + LD+N +LLP+S  +   
Sbjct  184  NGKGWHASVAVADQQGVFFEVTVKLPDLITKSHLPLDDSIRVWLDQNNHLLPFSYIP---  240

Query  240  NQLHEILNQLKNSKLHDGWQQTPDYLVLRTQLKGPGWQQLVIYPRMGFAWEALKPAlyql  299
               + I  QL N  LHDGWQQ P++L+LRT L GPGW  + +YP   +    LK  L Q+
Sbjct  241  ---QKIRTQLENVTLHDGWQQIPGFLILRTTLHGPGWSLVTLYPYGNLHNRILKIILQQI  297

Query  300  pfalailllltsvlslllryylaiplWNFINIIGATGPQAMEPRLPINRIDELGHIARAY  359
            PF+L+ L+L+TS +  LL+  LA PLW F+++I  T+  ++  RLP +R+DEL+ IA A+
Sbjct  298  PFTLTALVLMTSAFCWLLHRSLAKPLWRFVDVINKTATAPLSTRLPAQRLDELDSIAGAF  357

Query  360  NNLLDTLNEQYDTLEMKVKertlalaeakraaeqanrrKSDHLTTISHEIRTPLNGALGA  419
            N+LLDTL+ QYD LE KV ERT AL EAK+ AE+AN+RKS HLT ISHE+RTP+NG LGA
Sbjct  358  NQLLDTLQVQYDNLENKVAERTQALNEAKKRAERANKRKSIHLTVISHELRTPMNGVLGA  417

Query  420  VELLQNTPLDAGQMRLAETAHQCslsllaiinnllDFSRIESGQMTLSLEKTALLPLLDQ  479
            +ELLQ TPL+  Q  LA+TA++C+LSLLAIINNLLDFSRIESG+ TL +E TALLPLLDQ
Sbjct  418  IELLQTTPLNIEQQGLADTARNCTLSLLAIINNLLDFSRIESGHFTLHMEETALLPLLDQ  477

Query  480  AMLTIHSQALSKSLALSTFISANIPLELELDTLRLRQILVNLLGNAVKFTPQGRIQLRVR  539
            AM TI++ A SK L+L TF++ ++PL ++ D++RLRQILVNLLGNAVKFT  G I+L V+
Sbjct  478  AMQTIQGPAQSKKLSLRTFVGQHVPLYFHTDSIRLRQILVNLLGNAVKFTETGGIRLTVK  537

Query  540  RQNQTLCFTVEDTGCGIDVQHQQTIFQPFMQTSDHEQGTGLGLAIADNLAKMMGGHLTVF  599
            R+++ L F V D+G GI++Q+Q  IF +F Q+  + QGTG+GL+IA +LAKMMGG+LT+ 
Sbjct  538  RHEEQLIFLVSDSGKGIEIQQQSQIFTAFYQADTNSQGTGIGLTIASSLAKMMGGNLTLK  597

Query  600  SEPGQGSCFSLCLPFNAITPPMPFHGELFAPQRLHAQLSAWGMTCQPELANQPSRHFVDN  659
            S PG G+C SL LP++   PP P+ G L AP  LH QL+ WG+  +P    +    +++ 
Sbjct  598  SVPGVGTCVSLVLPLQEYQPPQPIKGTLSAPFCLHRQLACWGIRGEP---PHQQNALLNA  654

Query  660  ALCYLPGRLYAKLKQYLQGAETEALKSLPLQPWQMHILLVDDSETNRDITGMMLQQLGHQ  719
             L Y++G+LY   +Q +  +   ++ +  L PWQ++ILLVDD++ NRDI G ML  LG++
Sbjct  655  ELLYFSGKLYDLAQQLILCTPNMPVINNLLPPWQLQILLVDDADINRDIIGKMLVSLGQH  714

Query  720  VTRADSGTTALAIGRQHRFDLVLMDIRMPVLDGLATTARWRHDPANIDSHCMITALSANA  779
            VT A S+  AL++++Q+RFDLVL+DIRMP +DG+     W+++P N+D++CM+ ALSA+ 
Sbjct  715  VTIAASSNEALTLSQQQRFDLVLIDIRMPEIDGIECVRLWHDEPNNLDPDCMFVALSASV  774

Query  780  SPDEQIKTSQAGMNHYLSKPVTLGQLAEMLDLTAQFQLERGV  821
            + ++  +  + G++HY++KPVTL+ LA  + ++A++QL R +
Sbjct  775  ATEDIHRCKKNGIHHYITKPVTLATLARYISIAAEYQLLRNI  816

43) YPA_4028 in NC_008150


> U51927|1|G1|1498305|AAC44299.1|Salmonella_enterica_subsp._enterica_serovar_Typhimurium_LT2|-|1..2468|spiR|-|SpiR
Length=823

 Score =  509 bits (1919),  Expect = 3e-145, Method: Compositional matrix adjust.
 Identities = 380/822 (47%), Positives = 570/822 (70%), Gaps = 22/822 (2%)

Query  5    SSLVTRLTLLMGVTLTVIWLILIATTAFFSYENTRQILINELTHMASMRADLSNHQFEGA  64
            +SLV RLT+L  +T  +IWL+ + T+A++S  + RQ +I++L+ ++ M   LSN++FE A
Sbjct  12   TSLVIRLTFLFLLTTIIIWLLSVLTAAYISMVQKRQHIIEDLSVLSEMNIVLSNQRFEEA  71

Query  65   ERDAASLI---SRRESLQSTSPLPEISIKHYDSYYIPFNLDSCN--INQHKNDLWIIQAY  119
            ERDA +L+   S    ++    +PE+S +H     ++    +C   +N +K+ L ++Q+ 
Sbjct  72   ERDAKNLMYQCSLATEIHHNDIFPEVS-RH-----LSVGPSNCTPTLNGEKHRL-FLQSS  124

Query  120  GTAGQTYYLDSFIIKQKEGIVLFPPQKSSSDYLNQRRKDLLLLPKFPTHNNIYWGAPTYT  179
            +   +++  DSFI+++K+ I L++ +++S DY   +      +P +PTH  +YW+ P Y 
Sbjct  125  DIDENSFRRDSFILNHKNEISLLSTDNPS-DYSTLQPLTRKSFPLYPTHAGFYWSEPEYI  183

Query  180  PQGGWHVSVAVCDKVGTLAGFALKLNDLIAYNHPVEQRDINLLLDKNGELLPISQQATSS  239
               GWH SVAV D+ G +   ++KL DLI+ +H   +  I + LD+N +LLP+S  +   
Sbjct  184  NGKGWHASVAVADQQGVFFEVTVKLPDLITKSHLPLDDSIRVWLDQNNHLLPFSYIP---  240

Query  240  NQLHEILNQLKNSKLHDGWQQTPDYLVLRTQLKGPGWQQLVIYPRMGFAWEALKPAlyql  299
               + I  QL N  LHDGWQQ P++L+LRT L GPGW  + +YP   +    LK  L Q+
Sbjct  241  ---QKIRTQLENVTLHDGWQQIPGFLILRTTLHGPGWSLVTLYPYGNLHNRILKIILQQI  297

Query  300  pfalailllltsvlslllryylaiplWNFINIIGATGPQAMEPRLPINRIDELGHIARAY  359
            PF+L+ L+L+TS +  LL+  LA PLW F+++I  T+  ++  RLP +R+DEL+ IA A+
Sbjct  298  PFTLTALVLMTSAFCWLLHRSLAKPLWRFVDVINKTATAPLSTRLPAQRLDELDSIAGAF  357

Query  360  NNLLDTLNEQYDTLEMKVKertlalaeakraaeqanrrKSDHLTTISHEIRTPLNGALGA  419
            N+LLDTL+ QYD LE KV ERT AL EAK+ AE+AN+RKS HLT ISHE+RTP+NG LGA
Sbjct  358  NQLLDTLQVQYDNLENKVAERTQALNEAKKRAERANKRKSIHLTVISHELRTPMNGVLGA  417

Query  420  VELLQNTPLDAGQMRLAETAHQCslsllaiinnllDFSRIESGQMTLSLEKTALLPLLDQ  479
            +ELLQ TPL+  Q  LA+TA++C+LSLLAIINNLLDFSRIESG+ TL +E TALLPLLDQ
Sbjct  418  IELLQTTPLNIEQQGLADTARNCTLSLLAIINNLLDFSRIESGHFTLHMEETALLPLLDQ  477

Query  480  AMLTIHSQALSKSLALSTFISANIPLELELDTLRLRQILVNLLGNAVKFTPQGRIQLRVR  539
            AM TI++ A SK L+L TF++ ++PL ++ D++RLRQILVNLLGNAVKFT  G I+L V+
Sbjct  478  AMQTIQGPAQSKKLSLRTFVGQHVPLYFHTDSIRLRQILVNLLGNAVKFTETGGIRLTVK  537

Query  540  RQNQTLCFTVEDTGCGIDVQHQQTIFQPFMQTSDHEQGTGLGLAIADNLAKMMGGHLTVF  599
            R+++ L F V D+G GI++Q+Q  IF +F Q+  + QGTG+GL+IA +LAKMMGG+LT+ 
Sbjct  538  RHEEQLIFLVSDSGKGIEIQQQSQIFTAFYQADTNSQGTGIGLTIASSLAKMMGGNLTLK  597

Query  600  SEPGQGSCFSLCLPFNAITPPMPFHGELFAPQRLHAQLSAWGMTCQPELANQPSRHFVDN  659
            S PG G+C SL LP++   PP P+ G L AP  LH QL+ WG+  +P    +    +++ 
Sbjct  598  SVPGVGTCVSLVLPLQEYQPPQPIKGTLSAPFCLHRQLACWGIRGEP---PHQQNALLNA  654

Query  660  ALCYLPGRLYAKLKQYLQGAETEALKSLPLQPWQMHILLVDDSETNRDITGMMLQQLGHQ  719
             L Y++G+LY   +Q +  +   ++ +  L PWQ++ILLVDD++ NRDI G ML  LG++
Sbjct  655  ELLYFSGKLYDLAQQLILCTPNMPVINNLLPPWQLQILLVDDADINRDIIGKMLVSLGQH  714

Query  720  VTRADSGTTALAIGRQHRFDLVLMDIRMPVLDGLATTARWRHDPANIDSHCMITALSANA  779
            VT A S+  AL++++Q+RFDLVL+DIRMP +DG+     W+++P N+D++CM+ ALSA+ 
Sbjct  715  VTIAASSNEALTLSQQQRFDLVLIDIRMPEIDGIECVRLWHDEPNNLDPDCMFVALSASV  774

Query  780  SPDEQIKTSQAGMNHYLSKPVTLGQLAEMLDLTAQFQLERGV  821
            + ++  +  + G++HY++KPVTL+ LA  + ++A++QL R +
Sbjct  775  ATEDIHRCKKNGIHHYITKPVTLATLARYISIAAEYQLLRNI  816

44) YPC_0754 in NC_017265


> U51927|1|G1|1498305|AAC44299.1|Salmonella_enterica_subsp._enterica_serovar_Typhimurium_LT2|-|1..2468|spiR|-|SpiR
Length=823

 Score =  509 bits (1919),  Expect = 3e-145, Method: Compositional matrix adjust.
 Identities = 380/822 (47%), Positives = 570/822 (70%), Gaps = 22/822 (2%)

Query  5    SSLVTRLTLLMGVTLTVIWLILIATTAFFSYENTRQILINELTHMASMRADLSNHQFEGA  64
            +SLV RLT+L  +T  +IWL+ + T+A++S  + RQ +I++L+ ++ M   LSN++FE A
Sbjct  12   TSLVIRLTFLFLLTTIIIWLLSVLTAAYISMVQKRQHIIEDLSVLSEMNIVLSNQRFEEA  71

Query  65   ERDAASLI---SRRESLQSTSPLPEISIKHYDSYYIPFNLDSCN--INQHKNDLWIIQAY  119
            ERDA +L+   S    ++    +PE+S +H     ++    +C   +N +K+ L ++Q+ 
Sbjct  72   ERDAKNLMYQCSLATEIHHNDIFPEVS-RH-----LSVGPSNCTPTLNGEKHRL-FLQSS  124

Query  120  GTAGQTYYLDSFIIKQKEGIVLFPPQKSSSDYLNQRRKDLLLLPKFPTHNNIYWGAPTYT  179
            +   +++  DSFI+++K+ I L++ +++S DY   +      +P +PTH  +YW+ P Y 
Sbjct  125  DIDENSFRRDSFILNHKNEISLLSTDNPS-DYSTLQPLTRKSFPLYPTHAGFYWSEPEYI  183

Query  180  PQGGWHVSVAVCDKVGTLAGFALKLNDLIAYNHPVEQRDINLLLDKNGELLPISQQATSS  239
               GWH SVAV D+ G +   ++KL DLI+ +H   +  I + LD+N +LLP+S  +   
Sbjct  184  NGKGWHASVAVADQQGVFFEVTVKLPDLITKSHLPLDDSIRVWLDQNNHLLPFSYIP---  240

Query  240  NQLHEILNQLKNSKLHDGWQQTPDYLVLRTQLKGPGWQQLVIYPRMGFAWEALKPAlyql  299
               + I  QL N  LHDGWQQ P++L+LRT L GPGW  + +YP   +    LK  L Q+
Sbjct  241  ---QKIRTQLENVTLHDGWQQIPGFLILRTTLHGPGWSLVTLYPYGNLHNRILKIILQQI  297

Query  300  pfalailllltsvlslllryylaiplWNFINIIGATGPQAMEPRLPINRIDELGHIARAY  359
            PF+L+ L+L+TS +  LL+  LA PLW F+++I  T+  ++  RLP +R+DEL+ IA A+
Sbjct  298  PFTLTALVLMTSAFCWLLHRSLAKPLWRFVDVINKTATAPLSTRLPAQRLDELDSIAGAF  357

Query  360  NNLLDTLNEQYDTLEMKVKertlalaeakraaeqanrrKSDHLTTISHEIRTPLNGALGA  419
            N+LLDTL+ QYD LE KV ERT AL EAK+ AE+AN+RKS HLT ISHE+RTP+NG LGA
Sbjct  358  NQLLDTLQVQYDNLENKVAERTQALNEAKKRAERANKRKSIHLTVISHELRTPMNGVLGA  417

Query  420  VELLQNTPLDAGQMRLAETAHQCslsllaiinnllDFSRIESGQMTLSLEKTALLPLLDQ  479
            +ELLQ TPL+  Q  LA+TA++C+LSLLAIINNLLDFSRIESG+ TL +E TALLPLLDQ
Sbjct  418  IELLQTTPLNIEQQGLADTARNCTLSLLAIINNLLDFSRIESGHFTLHMEETALLPLLDQ  477

Query  480  AMLTIHSQALSKSLALSTFISANIPLELELDTLRLRQILVNLLGNAVKFTPQGRIQLRVR  539
            AM TI++ A SK L+L TF++ ++PL ++ D++RLRQILVNLLGNAVKFT  G I+L V+
Sbjct  478  AMQTIQGPAQSKKLSLRTFVGQHVPLYFHTDSIRLRQILVNLLGNAVKFTETGGIRLTVK  537

Query  540  RQNQTLCFTVEDTGCGIDVQHQQTIFQPFMQTSDHEQGTGLGLAIADNLAKMMGGHLTVF  599
            R+++ L F V D+G GI++Q+Q  IF +F Q+  + QGTG+GL+IA +LAKMMGG+LT+ 
Sbjct  538  RHEEQLIFLVSDSGKGIEIQQQSQIFTAFYQADTNSQGTGIGLTIASSLAKMMGGNLTLK  597

Query  600  SEPGQGSCFSLCLPFNAITPPMPFHGELFAPQRLHAQLSAWGMTCQPELANQPSRHFVDN  659
            S PG G+C SL LP++   PP P+ G L AP  LH QL+ WG+  +P    +    +++ 
Sbjct  598  SVPGVGTCVSLVLPLQEYQPPQPIKGTLSAPFCLHRQLACWGIRGEP---PHQQNALLNA  654

Query  660  ALCYLPGRLYAKLKQYLQGAETEALKSLPLQPWQMHILLVDDSETNRDITGMMLQQLGHQ  719
             L Y++G+LY   +Q +  +   ++ +  L PWQ++ILLVDD++ NRDI G ML  LG++
Sbjct  655  ELLYFSGKLYDLAQQLILCTPNMPVINNLLPPWQLQILLVDDADINRDIIGKMLVSLGQH  714

Query  720  VTRADSGTTALAIGRQHRFDLVLMDIRMPVLDGLATTARWRHDPANIDSHCMITALSANA  779
            VT A S+  AL++++Q+RFDLVL+DIRMP +DG+     W+++P N+D++CM+ ALSA+ 
Sbjct  715  VTIAASSNEALTLSQQQRFDLVLIDIRMPEIDGIECVRLWHDEPNNLDPDCMFVALSASV  774

Query  780  SPDEQIKTSQAGMNHYLSKPVTLGQLAEMLDLTAQFQLERGV  821
            + ++  +  + G++HY++KPVTL+ LA  + ++A++QL R +
Sbjct  775  ATEDIHRCKKNGIHHYITKPVTLATLARYISIAAEYQLLRNI  816

45) YPO0256 in NC_003143


> U51927|1|G1|1498305|AAC44299.1|Salmonella_enterica_subsp._enterica_serovar_Typhimurium_LT2|-|1..2468|spiR|-|SpiR
Length=823

 Score =  509 bits (1919),  Expect = 3e-145, Method: Compositional matrix adjust.
 Identities = 380/822 (47%), Positives = 570/822 (70%), Gaps = 22/822 (2%)

Query  5    SSLVTRLTLLMGVTLTVIWLILIATTAFFSYENTRQILINELTHMASMRADLSNHQFEGA  64
            +SLV RLT+L  +T  +IWL+ + T+A++S  + RQ +I++L+ ++ M   LSN++FE A
Sbjct  12   TSLVIRLTFLFLLTTIIIWLLSVLTAAYISMVQKRQHIIEDLSVLSEMNIVLSNQRFEEA  71

Query  65   ERDAASLI---SRRESLQSTSPLPEISIKHYDSYYIPFNLDSCN--INQHKNDLWIIQAY  119
            ERDA +L+   S    ++    +PE+S +H     ++    +C   +N +K+ L ++Q+ 
Sbjct  72   ERDAKNLMYQCSLATEIHHNDIFPEVS-RH-----LSVGPSNCTPTLNGEKHRL-FLQSS  124

Query  120  GTAGQTYYLDSFIIKQKEGIVLFPPQKSSSDYLNQRRKDLLLLPKFPTHNNIYWGAPTYT  179
            +   +++  DSFI+++K+ I L++ +++S DY   +      +P +PTH  +YW+ P Y 
Sbjct  125  DIDENSFRRDSFILNHKNEISLLSTDNPS-DYSTLQPLTRKSFPLYPTHAGFYWSEPEYI  183

Query  180  PQGGWHVSVAVCDKVGTLAGFALKLNDLIAYNHPVEQRDINLLLDKNGELLPISQQATSS  239
               GWH SVAV D+ G +   ++KL DLI+ +H   +  I + LD+N +LLP+S  +   
Sbjct  184  NGKGWHASVAVADQQGVFFEVTVKLPDLITKSHLPLDDSIRVWLDQNNHLLPFSYIP---  240

Query  240  NQLHEILNQLKNSKLHDGWQQTPDYLVLRTQLKGPGWQQLVIYPRMGFAWEALKPAlyql  299
               + I  QL N  LHDGWQQ P++L+LRT L GPGW  + +YP   +    LK  L Q+
Sbjct  241  ---QKIRTQLENVTLHDGWQQIPGFLILRTTLHGPGWSLVTLYPYGNLHNRILKIILQQI  297

Query  300  pfalailllltsvlslllryylaiplWNFINIIGATGPQAMEPRLPINRIDELGHIARAY  359
            PF+L+ L+L+TS +  LL+  LA PLW F+++I  T+  ++  RLP +R+DEL+ IA A+
Sbjct  298  PFTLTALVLMTSAFCWLLHRSLAKPLWRFVDVINKTATAPLSTRLPAQRLDELDSIAGAF  357

Query  360  NNLLDTLNEQYDTLEMKVKertlalaeakraaeqanrrKSDHLTTISHEIRTPLNGALGA  419
            N+LLDTL+ QYD LE KV ERT AL EAK+ AE+AN+RKS HLT ISHE+RTP+NG LGA
Sbjct  358  NQLLDTLQVQYDNLENKVAERTQALNEAKKRAERANKRKSIHLTVISHELRTPMNGVLGA  417

Query  420  VELLQNTPLDAGQMRLAETAHQCslsllaiinnllDFSRIESGQMTLSLEKTALLPLLDQ  479
            +ELLQ TPL+  Q  LA+TA++C+LSLLAIINNLLDFSRIESG+ TL +E TALLPLLDQ
Sbjct  418  IELLQTTPLNIEQQGLADTARNCTLSLLAIINNLLDFSRIESGHFTLHMEETALLPLLDQ  477

Query  480  AMLTIHSQALSKSLALSTFISANIPLELELDTLRLRQILVNLLGNAVKFTPQGRIQLRVR  539
            AM TI++ A SK L+L TF++ ++PL ++ D++RLRQILVNLLGNAVKFT  G I+L V+
Sbjct  478  AMQTIQGPAQSKKLSLRTFVGQHVPLYFHTDSIRLRQILVNLLGNAVKFTETGGIRLTVK  537

Query  540  RQNQTLCFTVEDTGCGIDVQHQQTIFQPFMQTSDHEQGTGLGLAIADNLAKMMGGHLTVF  599
            R+++ L F V D+G GI++Q+Q  IF +F Q+  + QGTG+GL+IA +LAKMMGG+LT+ 
Sbjct  538  RHEEQLIFLVSDSGKGIEIQQQSQIFTAFYQADTNSQGTGIGLTIASSLAKMMGGNLTLK  597

Query  600  SEPGQGSCFSLCLPFNAITPPMPFHGELFAPQRLHAQLSAWGMTCQPELANQPSRHFVDN  659
            S PG G+C SL LP++   PP P+ G L AP  LH QL+ WG+  +P    +    +++ 
Sbjct  598  SVPGVGTCVSLVLPLQEYQPPQPIKGTLSAPFCLHRQLACWGIRGEP---PHQQNALLNA  654

Query  660  ALCYLPGRLYAKLKQYLQGAETEALKSLPLQPWQMHILLVDDSETNRDITGMMLQQLGHQ  719
             L Y++G+LY   +Q +  +   ++ +  L PWQ++ILLVDD++ NRDI G ML  LG++
Sbjct  655  ELLYFSGKLYDLAQQLILCTPNMPVINNLLPPWQLQILLVDDADINRDIIGKMLVSLGQH  714

Query  720  VTRADSGTTALAIGRQHRFDLVLMDIRMPVLDGLATTARWRHDPANIDSHCMITALSANA  779
            VT A S+  AL++++Q+RFDLVL+DIRMP +DG+     W+++P N+D++CM+ ALSA+ 
Sbjct  715  VTIAASSNEALTLSQQQRFDLVLIDIRMPEIDGIECVRLWHDEPNNLDPDCMFVALSASV  774

Query  780  SPDEQIKTSQAGMNHYLSKPVTLGQLAEMLDLTAQFQLERGV  821
            + ++  +  + G++HY++KPVTL+ LA  + ++A++QL R +
Sbjct  775  ATEDIHRCKKNGIHHYITKPVTLATLARYISIAAEYQLLRNI  816

46) YPD4_0223 in NC_017154


> U51927|1|G1|1498305|AAC44299.1|Salmonella_enterica_subsp._enterica_serovar_Typhimurium_LT2|-|1..2468|spiR|-|SpiR
Length=823

 Score =  509 bits (1919),  Expect = 3e-145, Method: Compositional matrix adjust.
 Identities = 380/822 (47%), Positives = 570/822 (70%), Gaps = 22/822 (2%)

Query  5    SSLVTRLTLLMGVTLTVIWLILIATTAFFSYENTRQILINELTHMASMRADLSNHQFEGA  64
            +SLV RLT+L  +T  +IWL+ + T+A++S  + RQ +I++L+ ++ M   LSN++FE A
Sbjct  12   TSLVIRLTFLFLLTTIIIWLLSVLTAAYISMVQKRQHIIEDLSVLSEMNIVLSNQRFEEA  71

Query  65   ERDAASLI---SRRESLQSTSPLPEISIKHYDSYYIPFNLDSCN--INQHKNDLWIIQAY  119
            ERDA +L+   S    ++    +PE+S +H     ++    +C   +N +K+ L ++Q+ 
Sbjct  72   ERDAKNLMYQCSLATEIHHNDIFPEVS-RH-----LSVGPSNCTPTLNGEKHRL-FLQSS  124

Query  120  GTAGQTYYLDSFIIKQKEGIVLFPPQKSSSDYLNQRRKDLLLLPKFPTHNNIYWGAPTYT  179
            +   +++  DSFI+++K+ I L++ +++S DY   +      +P +PTH  +YW+ P Y 
Sbjct  125  DIDENSFRRDSFILNHKNEISLLSTDNPS-DYSTLQPLTRKSFPLYPTHAGFYWSEPEYI  183

Query  180  PQGGWHVSVAVCDKVGTLAGFALKLNDLIAYNHPVEQRDINLLLDKNGELLPISQQATSS  239
               GWH SVAV D+ G +   ++KL DLI+ +H   +  I + LD+N +LLP+S  +   
Sbjct  184  NGKGWHASVAVADQQGVFFEVTVKLPDLITKSHLPLDDSIRVWLDQNNHLLPFSYIP---  240

Query  240  NQLHEILNQLKNSKLHDGWQQTPDYLVLRTQLKGPGWQQLVIYPRMGFAWEALKPAlyql  299
               + I  QL N  LHDGWQQ P++L+LRT L GPGW  + +YP   +    LK  L Q+
Sbjct  241  ---QKIRTQLENVTLHDGWQQIPGFLILRTTLHGPGWSLVTLYPYGNLHNRILKIILQQI  297

Query  300  pfalailllltsvlslllryylaiplWNFINIIGATGPQAMEPRLPINRIDELGHIARAY  359
            PF+L+ L+L+TS +  LL+  LA PLW F+++I  T+  ++  RLP +R+DEL+ IA A+
Sbjct  298  PFTLTALVLMTSAFCWLLHRSLAKPLWRFVDVINKTATAPLSTRLPAQRLDELDSIAGAF  357

Query  360  NNLLDTLNEQYDTLEMKVKertlalaeakraaeqanrrKSDHLTTISHEIRTPLNGALGA  419
            N+LLDTL+ QYD LE KV ERT AL EAK+ AE+AN+RKS HLT ISHE+RTP+NG LGA
Sbjct  358  NQLLDTLQVQYDNLENKVAERTQALNEAKKRAERANKRKSIHLTVISHELRTPMNGVLGA  417

Query  420  VELLQNTPLDAGQMRLAETAHQCslsllaiinnllDFSRIESGQMTLSLEKTALLPLLDQ  479
            +ELLQ TPL+  Q  LA+TA++C+LSLLAIINNLLDFSRIESG+ TL +E TALLPLLDQ
Sbjct  418  IELLQTTPLNIEQQGLADTARNCTLSLLAIINNLLDFSRIESGHFTLHMEETALLPLLDQ  477

Query  480  AMLTIHSQALSKSLALSTFISANIPLELELDTLRLRQILVNLLGNAVKFTPQGRIQLRVR  539
            AM TI++ A SK L+L TF++ ++PL ++ D++RLRQILVNLLGNAVKFT  G I+L V+
Sbjct  478  AMQTIQGPAQSKKLSLRTFVGQHVPLYFHTDSIRLRQILVNLLGNAVKFTETGGIRLTVK  537

Query  540  RQNQTLCFTVEDTGCGIDVQHQQTIFQPFMQTSDHEQGTGLGLAIADNLAKMMGGHLTVF  599
            R+++ L F V D+G GI++Q+Q  IF +F Q+  + QGTG+GL+IA +LAKMMGG+LT+ 
Sbjct  538  RHEEQLIFLVSDSGKGIEIQQQSQIFTAFYQADTNSQGTGIGLTIASSLAKMMGGNLTLK  597

Query  600  SEPGQGSCFSLCLPFNAITPPMPFHGELFAPQRLHAQLSAWGMTCQPELANQPSRHFVDN  659
            S PG G+C SL LP++   PP P+ G L AP  LH QL+ WG+  +P    +    +++ 
Sbjct  598  SVPGVGTCVSLVLPLQEYQPPQPIKGTLSAPFCLHRQLACWGIRGEP---PHQQNALLNA  654

Query  660  ALCYLPGRLYAKLKQYLQGAETEALKSLPLQPWQMHILLVDDSETNRDITGMMLQQLGHQ  719
             L Y++G+LY   +Q +  +   ++ +  L PWQ++ILLVDD++ NRDI G ML  LG++
Sbjct  655  ELLYFSGKLYDLAQQLILCTPNMPVINNLLPPWQLQILLVDDADINRDIIGKMLVSLGQH  714

Query  720  VTRADSGTTALAIGRQHRFDLVLMDIRMPVLDGLATTARWRHDPANIDSHCMITALSANA  779
            VT A S+  AL++++Q+RFDLVL+DIRMP +DG+     W+++P N+D++CM+ ALSA+ 
Sbjct  715  VTIAASSNEALTLSQQQRFDLVLIDIRMPEIDGIECVRLWHDEPNNLDPDCMFVALSASV  774

Query  780  SPDEQIKTSQAGMNHYLSKPVTLGQLAEMLDLTAQFQLERGV  821
            + ++  +  + G++HY++KPVTL+ LA  + ++A++QL R +
Sbjct  775  ATEDIHRCKKNGIHHYITKPVTLATLARYISIAAEYQLLRNI  816

47) YPD8_0228 in NC_017160


> U51927|1|G1|1498305|AAC44299.1|Salmonella_enterica_subsp._enterica_serovar_Typhimurium_LT2|-|1..2468|spiR|-|SpiR
Length=823

 Score =  509 bits (1919),  Expect = 3e-145, Method: Compositional matrix adjust.
 Identities = 380/822 (47%), Positives = 570/822 (70%), Gaps = 22/822 (2%)

Query  5    SSLVTRLTLLMGVTLTVIWLILIATTAFFSYENTRQILINELTHMASMRADLSNHQFEGA  64
            +SLV RLT+L  +T  +IWL+ + T+A++S  + RQ +I++L+ ++ M   LSN++FE A
Sbjct  12   TSLVIRLTFLFLLTTIIIWLLSVLTAAYISMVQKRQHIIEDLSVLSEMNIVLSNQRFEEA  71

Query  65   ERDAASLI---SRRESLQSTSPLPEISIKHYDSYYIPFNLDSCN--INQHKNDLWIIQAY  119
            ERDA +L+   S    ++    +PE+S +H     ++    +C   +N +K+ L ++Q+ 
Sbjct  72   ERDAKNLMYQCSLATEIHHNDIFPEVS-RH-----LSVGPSNCTPTLNGEKHRL-FLQSS  124

Query  120  GTAGQTYYLDSFIIKQKEGIVLFPPQKSSSDYLNQRRKDLLLLPKFPTHNNIYWGAPTYT  179
            +   +++  DSFI+++K+ I L++ +++S DY   +      +P +PTH  +YW+ P Y 
Sbjct  125  DIDENSFRRDSFILNHKNEISLLSTDNPS-DYSTLQPLTRKSFPLYPTHAGFYWSEPEYI  183

Query  180  PQGGWHVSVAVCDKVGTLAGFALKLNDLIAYNHPVEQRDINLLLDKNGELLPISQQATSS  239
               GWH SVAV D+ G +   ++KL DLI+ +H   +  I + LD+N +LLP+S  +   
Sbjct  184  NGKGWHASVAVADQQGVFFEVTVKLPDLITKSHLPLDDSIRVWLDQNNHLLPFSYIP---  240

Query  240  NQLHEILNQLKNSKLHDGWQQTPDYLVLRTQLKGPGWQQLVIYPRMGFAWEALKPAlyql  299
               + I  QL N  LHDGWQQ P++L+LRT L GPGW  + +YP   +    LK  L Q+
Sbjct  241  ---QKIRTQLENVTLHDGWQQIPGFLILRTTLHGPGWSLVTLYPYGNLHNRILKIILQQI  297

Query  300  pfalailllltsvlslllryylaiplWNFINIIGATGPQAMEPRLPINRIDELGHIARAY  359
            PF+L+ L+L+TS +  LL+  LA PLW F+++I  T+  ++  RLP +R+DEL+ IA A+
Sbjct  298  PFTLTALVLMTSAFCWLLHRSLAKPLWRFVDVINKTATAPLSTRLPAQRLDELDSIAGAF  357

Query  360  NNLLDTLNEQYDTLEMKVKertlalaeakraaeqanrrKSDHLTTISHEIRTPLNGALGA  419
            N+LLDTL+ QYD LE KV ERT AL EAK+ AE+AN+RKS HLT ISHE+RTP+NG LGA
Sbjct  358  NQLLDTLQVQYDNLENKVAERTQALNEAKKRAERANKRKSIHLTVISHELRTPMNGVLGA  417

Query  420  VELLQNTPLDAGQMRLAETAHQCslsllaiinnllDFSRIESGQMTLSLEKTALLPLLDQ  479
            +ELLQ TPL+  Q  LA+TA++C+LSLLAIINNLLDFSRIESG+ TL +E TALLPLLDQ
Sbjct  418  IELLQTTPLNIEQQGLADTARNCTLSLLAIINNLLDFSRIESGHFTLHMEETALLPLLDQ  477

Query  480  AMLTIHSQALSKSLALSTFISANIPLELELDTLRLRQILVNLLGNAVKFTPQGRIQLRVR  539
            AM TI++ A SK L+L TF++ ++PL ++ D++RLRQILVNLLGNAVKFT  G I+L V+
Sbjct  478  AMQTIQGPAQSKKLSLRTFVGQHVPLYFHTDSIRLRQILVNLLGNAVKFTETGGIRLTVK  537

Query  540  RQNQTLCFTVEDTGCGIDVQHQQTIFQPFMQTSDHEQGTGLGLAIADNLAKMMGGHLTVF  599
            R+++ L F V D+G GI++Q+Q  IF +F Q+  + QGTG+GL+IA +LAKMMGG+LT+ 
Sbjct  538  RHEEQLIFLVSDSGKGIEIQQQSQIFTAFYQADTNSQGTGIGLTIASSLAKMMGGNLTLK  597

Query  600  SEPGQGSCFSLCLPFNAITPPMPFHGELFAPQRLHAQLSAWGMTCQPELANQPSRHFVDN  659
            S PG G+C SL LP++   PP P+ G L AP  LH QL+ WG+  +P    +    +++ 
Sbjct  598  SVPGVGTCVSLVLPLQEYQPPQPIKGTLSAPFCLHRQLACWGIRGEP---PHQQNALLNA  654

Query  660  ALCYLPGRLYAKLKQYLQGAETEALKSLPLQPWQMHILLVDDSETNRDITGMMLQQLGHQ  719
             L Y++G+LY   +Q +  +   ++ +  L PWQ++ILLVDD++ NRDI G ML  LG++
Sbjct  655  ELLYFSGKLYDLAQQLILCTPNMPVINNLLPPWQLQILLVDDADINRDIIGKMLVSLGQH  714

Query  720  VTRADSGTTALAIGRQHRFDLVLMDIRMPVLDGLATTARWRHDPANIDSHCMITALSANA  779
            VT A S+  AL++++Q+RFDLVL+DIRMP +DG+     W+++P N+D++CM+ ALSA+ 
Sbjct  715  VTIAASSNEALTLSQQQRFDLVLIDIRMPEIDGIECVRLWHDEPNNLDPDCMFVALSASV  774

Query  780  SPDEQIKTSQAGMNHYLSKPVTLGQLAEMLDLTAQFQLERGV  821
            + ++  +  + G++HY++KPVTL+ LA  + ++A++QL R +
Sbjct  775  ATEDIHRCKKNGIHHYITKPVTLATLARYISIAAEYQLLRNI  816

48) YPN_3413 in NC_008149


> U51927|1|G1|1498305|AAC44299.1|Salmonella_enterica_subsp._enterica_serovar_Typhimurium_LT2|-|1..2468|spiR|-|SpiR
Length=823

 Score =  509 bits (1919),  Expect = 3e-145, Method: Compositional matrix adjust.
 Identities = 380/822 (47%), Positives = 570/822 (70%), Gaps = 22/822 (2%)

Query  5    SSLVTRLTLLMGVTLTVIWLILIATTAFFSYENTRQILINELTHMASMRADLSNHQFEGA  64
            +SLV RLT+L  +T  +IWL+ + T+A++S  + RQ +I++L+ ++ M   LSN++FE A
Sbjct  12   TSLVIRLTFLFLLTTIIIWLLSVLTAAYISMVQKRQHIIEDLSVLSEMNIVLSNQRFEEA  71

Query  65   ERDAASLI---SRRESLQSTSPLPEISIKHYDSYYIPFNLDSCN--INQHKNDLWIIQAY  119
            ERDA +L+   S    ++    +PE+S +H     ++    +C   +N +K+ L ++Q+ 
Sbjct  72   ERDAKNLMYQCSLATEIHHNDIFPEVS-RH-----LSVGPSNCTPTLNGEKHRL-FLQSS  124

Query  120  GTAGQTYYLDSFIIKQKEGIVLFPPQKSSSDYLNQRRKDLLLLPKFPTHNNIYWGAPTYT  179
            +   +++  DSFI+++K+ I L++ +++S DY   +      +P +PTH  +YW+ P Y 
Sbjct  125  DIDENSFRRDSFILNHKNEISLLSTDNPS-DYSTLQPLTRKSFPLYPTHAGFYWSEPEYI  183

Query  180  PQGGWHVSVAVCDKVGTLAGFALKLNDLIAYNHPVEQRDINLLLDKNGELLPISQQATSS  239
               GWH SVAV D+ G +   ++KL DLI+ +H   +  I + LD+N +LLP+S  +   
Sbjct  184  NGKGWHASVAVADQQGVFFEVTVKLPDLITKSHLPLDDSIRVWLDQNNHLLPFSYIP---  240

Query  240  NQLHEILNQLKNSKLHDGWQQTPDYLVLRTQLKGPGWQQLVIYPRMGFAWEALKPAlyql  299
               + I  QL N  LHDGWQQ P++L+LRT L GPGW  + +YP   +    LK  L Q+
Sbjct  241  ---QKIRTQLENVTLHDGWQQIPGFLILRTTLHGPGWSLVTLYPYGNLHNRILKIILQQI  297

Query  300  pfalailllltsvlslllryylaiplWNFINIIGATGPQAMEPRLPINRIDELGHIARAY  359
            PF+L+ L+L+TS +  LL+  LA PLW F+++I  T+  ++  RLP +R+DEL+ IA A+
Sbjct  298  PFTLTALVLMTSAFCWLLHRSLAKPLWRFVDVINKTATAPLSTRLPAQRLDELDSIAGAF  357

Query  360  NNLLDTLNEQYDTLEMKVKertlalaeakraaeqanrrKSDHLTTISHEIRTPLNGALGA  419
            N+LLDTL+ QYD LE KV ERT AL EAK+ AE+AN+RKS HLT ISHE+RTP+NG LGA
Sbjct  358  NQLLDTLQVQYDNLENKVAERTQALNEAKKRAERANKRKSIHLTVISHELRTPMNGVLGA  417

Query  420  VELLQNTPLDAGQMRLAETAHQCslsllaiinnllDFSRIESGQMTLSLEKTALLPLLDQ  479
            +ELLQ TPL+  Q  LA+TA++C+LSLLAIINNLLDFSRIESG+ TL +E TALLPLLDQ
Sbjct  418  IELLQTTPLNIEQQGLADTARNCTLSLLAIINNLLDFSRIESGHFTLHMEETALLPLLDQ  477

Query  480  AMLTIHSQALSKSLALSTFISANIPLELELDTLRLRQILVNLLGNAVKFTPQGRIQLRVR  539
            AM TI++ A SK L+L TF++ ++PL ++ D++RLRQILVNLLGNAVKFT  G I+L V+
Sbjct  478  AMQTIQGPAQSKKLSLRTFVGQHVPLYFHTDSIRLRQILVNLLGNAVKFTETGGIRLTVK  537

Query  540  RQNQTLCFTVEDTGCGIDVQHQQTIFQPFMQTSDHEQGTGLGLAIADNLAKMMGGHLTVF  599
            R+++ L F V D+G GI++Q+Q  IF +F Q+  + QGTG+GL+IA +LAKMMGG+LT+ 
Sbjct  538  RHEEQLIFLVSDSGKGIEIQQQSQIFTAFYQADTNSQGTGIGLTIASSLAKMMGGNLTLK  597

Query  600  SEPGQGSCFSLCLPFNAITPPMPFHGELFAPQRLHAQLSAWGMTCQPELANQPSRHFVDN  659
            S PG G+C SL LP++   PP P+ G L AP  LH QL+ WG+  +P    +    +++ 
Sbjct  598  SVPGVGTCVSLVLPLQEYQPPQPIKGTLSAPFCLHRQLACWGIRGEP---PHQQNALLNA  654

Query  660  ALCYLPGRLYAKLKQYLQGAETEALKSLPLQPWQMHILLVDDSETNRDITGMMLQQLGHQ  719
             L Y++G+LY   +Q +  +   ++ +  L PWQ++ILLVDD++ NRDI G ML  LG++
Sbjct  655  ELLYFSGKLYDLAQQLILCTPNMPVINNLLPPWQLQILLVDDADINRDIIGKMLVSLGQH  714

Query  720  VTRADSGTTALAIGRQHRFDLVLMDIRMPVLDGLATTARWRHDPANIDSHCMITALSANA  779
            VT A S+  AL++++Q+RFDLVL+DIRMP +DG+     W+++P N+D++CM+ ALSA+ 
Sbjct  715  VTIAASSNEALTLSQQQRFDLVLIDIRMPEIDGIECVRLWHDEPNNLDPDCMFVALSASV  774

Query  780  SPDEQIKTSQAGMNHYLSKPVTLGQLAEMLDLTAQFQLERGV  821
            + ++  +  + G++HY++KPVTL+ LA  + ++A++QL R +
Sbjct  775  ATEDIHRCKKNGIHHYITKPVTLATLARYISIAAEYQLLRNI  816

49) YPDSF_3715 in NC_009381


> U51927|1|G1|1498305|AAC44299.1|Salmonella_enterica_subsp._enterica_serovar_Typhimurium_LT2|-|1..2468|spiR|-|SpiR
Length=823

 Score =  509 bits (1919),  Expect = 3e-145, Method: Compositional matrix adjust.
 Identities = 380/822 (47%), Positives = 570/822 (70%), Gaps = 22/822 (2%)

Query  5    SSLVTRLTLLMGVTLTVIWLILIATTAFFSYENTRQILINELTHMASMRADLSNHQFEGA  64
            +SLV RLT+L  +T  +IWL+ + T+A++S  + RQ +I++L+ ++ M   LSN++FE A
Sbjct  12   TSLVIRLTFLFLLTTIIIWLLSVLTAAYISMVQKRQHIIEDLSVLSEMNIVLSNQRFEEA  71

Query  65   ERDAASLI---SRRESLQSTSPLPEISIKHYDSYYIPFNLDSCN--INQHKNDLWIIQAY  119
            ERDA +L+   S    ++    +PE+S +H     ++    +C   +N +K+ L ++Q+ 
Sbjct  72   ERDAKNLMYQCSLATEIHHNDIFPEVS-RH-----LSVGPSNCTPTLNGEKHRL-FLQSS  124

Query  120  GTAGQTYYLDSFIIKQKEGIVLFPPQKSSSDYLNQRRKDLLLLPKFPTHNNIYWGAPTYT  179
            +   +++  DSFI+++K+ I L++ +++S DY   +      +P +PTH  +YW+ P Y 
Sbjct  125  DIDENSFRRDSFILNHKNEISLLSTDNPS-DYSTLQPLTRKSFPLYPTHAGFYWSEPEYI  183

Query  180  PQGGWHVSVAVCDKVGTLAGFALKLNDLIAYNHPVEQRDINLLLDKNGELLPISQQATSS  239
               GWH SVAV D+ G +   ++KL DLI+ +H   +  I + LD+N +LLP+S  +   
Sbjct  184  NGKGWHASVAVADQQGVFFEVTVKLPDLITKSHLPLDDSIRVWLDQNNHLLPFSYIP---  240

Query  240  NQLHEILNQLKNSKLHDGWQQTPDYLVLRTQLKGPGWQQLVIYPRMGFAWEALKPAlyql  299
               + I  QL N  LHDGWQQ P++L+LRT L GPGW  + +YP   +    LK  L Q+
Sbjct  241  ---QKIRTQLENVTLHDGWQQIPGFLILRTTLHGPGWSLVTLYPYGNLHNRILKIILQQI  297

Query  300  pfalailllltsvlslllryylaiplWNFINIIGATGPQAMEPRLPINRIDELGHIARAY  359
            PF+L+ L+L+TS +  LL+  LA PLW F+++I  T+  ++  RLP +R+DEL+ IA A+
Sbjct  298  PFTLTALVLMTSAFCWLLHRSLAKPLWRFVDVINKTATAPLSTRLPAQRLDELDSIAGAF  357

Query  360  NNLLDTLNEQYDTLEMKVKertlalaeakraaeqanrrKSDHLTTISHEIRTPLNGALGA  419
            N+LLDTL+ QYD LE KV ERT AL EAK+ AE+AN+RKS HLT ISHE+RTP+NG LGA
Sbjct  358  NQLLDTLQVQYDNLENKVAERTQALNEAKKRAERANKRKSIHLTVISHELRTPMNGVLGA  417

Query  420  VELLQNTPLDAGQMRLAETAHQCslsllaiinnllDFSRIESGQMTLSLEKTALLPLLDQ  479
            +ELLQ TPL+  Q  LA+TA++C+LSLLAIINNLLDFSRIESG+ TL +E TALLPLLDQ
Sbjct  418  IELLQTTPLNIEQQGLADTARNCTLSLLAIINNLLDFSRIESGHFTLHMEETALLPLLDQ  477

Query  480  AMLTIHSQALSKSLALSTFISANIPLELELDTLRLRQILVNLLGNAVKFTPQGRIQLRVR  539
            AM TI++ A SK L+L TF++ ++PL ++ D++RLRQILVNLLGNAVKFT  G I+L V+
Sbjct  478  AMQTIQGPAQSKKLSLRTFVGQHVPLYFHTDSIRLRQILVNLLGNAVKFTETGGIRLTVK  537

Query  540  RQNQTLCFTVEDTGCGIDVQHQQTIFQPFMQTSDHEQGTGLGLAIADNLAKMMGGHLTVF  599
            R+++ L F V D+G GI++Q+Q  IF +F Q+  + QGTG+GL+IA +LAKMMGG+LT+ 
Sbjct  538  RHEEQLIFLVSDSGKGIEIQQQSQIFTAFYQADTNSQGTGIGLTIASSLAKMMGGNLTLK  597

Query  600  SEPGQGSCFSLCLPFNAITPPMPFHGELFAPQRLHAQLSAWGMTCQPELANQPSRHFVDN  659
            S PG G+C SL LP++   PP P+ G L AP  LH QL+ WG+  +P    +    +++ 
Sbjct  598  SVPGVGTCVSLVLPLQEYQPPQPIKGTLSAPFCLHRQLACWGIRGEP---PHQQNALLNA  654

Query  660  ALCYLPGRLYAKLKQYLQGAETEALKSLPLQPWQMHILLVDDSETNRDITGMMLQQLGHQ  719
             L Y++G+LY   +Q +  +   ++ +  L PWQ++ILLVDD++ NRDI G ML  LG++
Sbjct  655  ELLYFSGKLYDLAQQLILCTPNMPVINNLLPPWQLQILLVDDADINRDIIGKMLVSLGQH  714

Query  720  VTRADSGTTALAIGRQHRFDLVLMDIRMPVLDGLATTARWRHDPANIDSHCMITALSANA  779
            VT A S+  AL++++Q+RFDLVL+DIRMP +DG+     W+++P N+D++CM+ ALSA+ 
Sbjct  715  VTIAASSNEALTLSQQQRFDLVLIDIRMPEIDGIECVRLWHDEPNNLDPDCMFVALSASV  774

Query  780  SPDEQIKTSQAGMNHYLSKPVTLGQLAEMLDLTAQFQLERGV  821
            + ++  +  + G++HY++KPVTL+ LA  + ++A++QL R +
Sbjct  775  ATEDIHRCKKNGIHHYITKPVTLATLARYISIAAEYQLLRNI  816

50) YPZ3_0221 in NC_014029


> U51927|1|G1|1498305|AAC44299.1|Salmonella_enterica_subsp._enterica_serovar_Typhimurium_LT2|-|1..2468|spiR|-|SpiR
Length=823

 Score =  509 bits (1919),  Expect = 3e-145, Method: Compositional matrix adjust.
 Identities = 380/822 (47%), Positives = 570/822 (70%), Gaps = 22/822 (2%)

Query  5    SSLVTRLTLLMGVTLTVIWLILIATTAFFSYENTRQILINELTHMASMRADLSNHQFEGA  64
            +SLV RLT+L  +T  +IWL+ + T+A++S  + RQ +I++L+ ++ M   LSN++FE A
Sbjct  12   TSLVIRLTFLFLLTTIIIWLLSVLTAAYISMVQKRQHIIEDLSVLSEMNIVLSNQRFEEA  71

Query  65   ERDAASLI---SRRESLQSTSPLPEISIKHYDSYYIPFNLDSCN--INQHKNDLWIIQAY  119
            ERDA +L+   S    ++    +PE+S +H     ++    +C   +N +K+ L ++Q+ 
Sbjct  72   ERDAKNLMYQCSLATEIHHNDIFPEVS-RH-----LSVGPSNCTPTLNGEKHRL-FLQSS  124

Query  120  GTAGQTYYLDSFIIKQKEGIVLFPPQKSSSDYLNQRRKDLLLLPKFPTHNNIYWGAPTYT  179
            +   +++  DSFI+++K+ I L++ +++S DY   +      +P +PTH  +YW+ P Y 
Sbjct  125  DIDENSFRRDSFILNHKNEISLLSTDNPS-DYSTLQPLTRKSFPLYPTHAGFYWSEPEYI  183

Query  180  PQGGWHVSVAVCDKVGTLAGFALKLNDLIAYNHPVEQRDINLLLDKNGELLPISQQATSS  239
               GWH SVAV D+ G +   ++KL DLI+ +H   +  I + LD+N +LLP+S  +   
Sbjct  184  NGKGWHASVAVADQQGVFFEVTVKLPDLITKSHLPLDDSIRVWLDQNNHLLPFSYIP---  240

Query  240  NQLHEILNQLKNSKLHDGWQQTPDYLVLRTQLKGPGWQQLVIYPRMGFAWEALKPAlyql  299
               + I  QL N  LHDGWQQ P++L+LRT L GPGW  + +YP   +    LK  L Q+
Sbjct  241  ---QKIRTQLENVTLHDGWQQIPGFLILRTTLHGPGWSLVTLYPYGNLHNRILKIILQQI  297

Query  300  pfalailllltsvlslllryylaiplWNFINIIGATGPQAMEPRLPINRIDELGHIARAY  359
            PF+L+ L+L+TS +  LL+  LA PLW F+++I  T+  ++  RLP +R+DEL+ IA A+
Sbjct  298  PFTLTALVLMTSAFCWLLHRSLAKPLWRFVDVINKTATAPLSTRLPAQRLDELDSIAGAF  357

Query  360  NNLLDTLNEQYDTLEMKVKertlalaeakraaeqanrrKSDHLTTISHEIRTPLNGALGA  419
            N+LLDTL+ QYD LE KV ERT AL EAK+ AE+AN+RKS HLT ISHE+RTP+NG LGA
Sbjct  358  NQLLDTLQVQYDNLENKVAERTQALNEAKKRAERANKRKSIHLTVISHELRTPMNGVLGA  417

Query  420  VELLQNTPLDAGQMRLAETAHQCslsllaiinnllDFSRIESGQMTLSLEKTALLPLLDQ  479
            +ELLQ TPL+  Q  LA+TA++C+LSLLAIINNLLDFSRIESG+ TL +E TALLPLLDQ
Sbjct  418  IELLQTTPLNIEQQGLADTARNCTLSLLAIINNLLDFSRIESGHFTLHMEETALLPLLDQ  477

Query  480  AMLTIHSQALSKSLALSTFISANIPLELELDTLRLRQILVNLLGNAVKFTPQGRIQLRVR  539
            AM TI++ A SK L+L TF++ ++PL ++ D++RLRQILVNLLGNAVKFT  G I+L V+
Sbjct  478  AMQTIQGPAQSKKLSLRTFVGQHVPLYFHTDSIRLRQILVNLLGNAVKFTETGGIRLTVK  537

Query  540  RQNQTLCFTVEDTGCGIDVQHQQTIFQPFMQTSDHEQGTGLGLAIADNLAKMMGGHLTVF  599
            R+++ L F V D+G GI++Q+Q  IF +F Q+  + QGTG+GL+IA +LAKMMGG+LT+ 
Sbjct  538  RHEEQLIFLVSDSGKGIEIQQQSQIFTAFYQADTNSQGTGIGLTIASSLAKMMGGNLTLK  597

Query  600  SEPGQGSCFSLCLPFNAITPPMPFHGELFAPQRLHAQLSAWGMTCQPELANQPSRHFVDN  659
            S PG G+C SL LP++   PP P+ G L AP  LH QL+ WG+  +P    +    +++ 
Sbjct  598  SVPGVGTCVSLVLPLQEYQPPQPIKGTLSAPFCLHRQLACWGIRGEP---PHQQNALLNA  654

Query  660  ALCYLPGRLYAKLKQYLQGAETEALKSLPLQPWQMHILLVDDSETNRDITGMMLQQLGHQ  719
             L Y++G+LY   +Q +  +   ++ +  L PWQ++ILLVDD++ NRDI G ML  LG++
Sbjct  655  ELLYFSGKLYDLAQQLILCTPNMPVINNLLPPWQLQILLVDDADINRDIIGKMLVSLGQH  714

Query  720  VTRADSGTTALAIGRQHRFDLVLMDIRMPVLDGLATTARWRHDPANIDSHCMITALSANA  779
            VT A S+  AL++++Q+RFDLVL+DIRMP +DG+     W+++P N+D++CM+ ALSA+ 
Sbjct  715  VTIAASSNEALTLSQQQRFDLVLIDIRMPEIDGIECVRLWHDEPNNLDPDCMFVALSASV  774

Query  780  SPDEQIKTSQAGMNHYLSKPVTLGQLAEMLDLTAQFQLERGV  821
            + ++  +  + G++HY++KPVTL+ LA  + ++A++QL R +
Sbjct  775  ATEDIHRCKKNGIHHYITKPVTLATLARYISIAAEYQLLRNI  816

51) baeS1 in NC_005810


> U51927|1|G1|1498305|AAC44299.1|Salmonella_enterica_subsp._enterica_serovar_Typhimurium_LT2|-|1..2468|spiR|-|SpiR
Length=823

 Score =  501 bits (1889),  Expect = 7e-143, Method: Compositional matrix adjust.
 Identities = 375/816 (46%), Positives = 565/816 (70%), Gaps = 22/816 (2%)

Query  1    MTLLMGVTLTVIWLILIATTAFFSYENTRQILINELTHMASMRADLSNHQFEGAERDAAS  60
            +T+L  +T  +IWL+ + T+A++S  + RQ +I++L+ ++ M   LSN++FE AERDA +
Sbjct  18   LTFLFLLTTIIIWLLSVLTAAYISMVQKRQHIIEDLSVLSEMNIVLSNQRFEEAERDAKN  77

Query  61   LI---SRRESLQSTSPLPEISIKHYDSYYIPFNLDSCN--INQHKNDLWIIQAYGTAGQT  115
            L+   S    ++    +PE+S +H     ++    +C   +N +K+ L ++Q+ +   ++
Sbjct  78   LMYQCSLATEIHHNDIFPEVS-RH-----LSVGPSNCTPTLNGEKHRL-FLQSSDIDENS  130

Query  116  YYLDSFIIKQKEGIVLFPPQKSSSDYLNQRRKDLLLLPKFPTHNNIYWGAPTYTPQGGWH  175
            +  DSFI+++K+ I L++ +++S DY   +      +P +PTH  +YW+ P Y    GWH
Sbjct  131  FRRDSFILNHKNEISLLSTDNPS-DYSTLQPLTRKSFPLYPTHAGFYWSEPEYINGKGWH  189

Query  176  VSVAVCDKVGTLAGFALKLNDLIAYNHPVEQRDINLLLDKNGELLPISQQATSSNQLHEI  235
             SVAV D+ G +   ++KL DLI+ +H   +  I + LD+N +LLP+S  +      + I
Sbjct  190  ASVAVADQQGVFFEVTVKLPDLITKSHLPLDDSIRVWLDQNNHLLPFSYIP------QKI  243

Query  236  LNQLKNSKLHDGWQQTPDYLVLRTQLKGPGWQQLVIYPRMGFAWEALKPAlyqlpfalai  295
              QL N  LHDGWQQ P++L+LRT L GPGW  + +YP   +    LK  L Q+PF+L+ 
Sbjct  244  RTQLENVTLHDGWQQIPGFLILRTTLHGPGWSLVTLYPYGNLHNRILKIILQQIPFTLTA  303

Query  296  lllltsvlslllryylaiplWNFINIIGATGPQAMEPRLPINRIDELGHIARAYNNLLDT  355
            L+L+TS +  LL+  LA PLW F+++I  T+  ++  RLP +R+DEL+ IA A+N+LLDT
Sbjct  304  LVLMTSAFCWLLHRSLAKPLWRFVDVINKTATAPLSTRLPAQRLDELDSIAGAFNQLLDT  363

Query  356  LNEQYDTLEMKVKertlalaeakraaeqanrrKSDHLTTISHEIRTPLNGALGAVELLQN  415
            L+ QYD LE KV ERT AL EAK+ AE+AN+RKS HLT ISHE+RTP+NG LGA+ELLQ 
Sbjct  364  LQVQYDNLENKVAERTQALNEAKKRAERANKRKSIHLTVISHELRTPMNGVLGAIELLQT  423

Query  416  TPLDAGQMRLAETAHQCslsllaiinnllDFSRIESGQMTLSLEKTALLPLLDQAMLTIH  475
            TPL+  Q  LA+TA++C+LSLLAIINNLLDFSRIESG+ TL +E TALLPLLDQAM TI+
Sbjct  424  TPLNIEQQGLADTARNCTLSLLAIINNLLDFSRIESGHFTLHMEETALLPLLDQAMQTIQ  483

Query  476  SQALSKSLALSTFISANIPLELELDTLRLRQILVNLLGNAVKFTPQGRIQLRVRRQNQTL  535
            + A SK L+L TF++ ++PL ++ D++RLRQILVNLLGNAVKFT  G I+L V+R+++ L
Sbjct  484  GPAQSKKLSLRTFVGQHVPLYFHTDSIRLRQILVNLLGNAVKFTETGGIRLTVKRHEEQL  543

Query  536  CFTVEDTGCGIDVQHQQTIFQPFMQTSDHEQGTGLGLAIADNLAKMMGGHLTVFSEPGQG  595
             F V D+G GI++Q+Q  IF +F Q+  + QGTG+GL+IA +LAKMMGG+LT+ S PG G
Sbjct  544  IFLVSDSGKGIEIQQQSQIFTAFYQADTNSQGTGIGLTIASSLAKMMGGNLTLKSVPGVG  603

Query  596  SCFSLCLPFNAITPPMPFHGELFAPQRLHAQLSAWGMTCQPELANQPSRHFVDNALCYLP  655
            +C SL LP++   PP P+ G L AP  LH QL+ WG+  +P    +    +++  L Y++
Sbjct  604  TCVSLVLPLQEYQPPQPIKGTLSAPFCLHRQLACWGIRGEP---PHQQNALLNAELLYFS  660

Query  656  GRLYAKLKQYLQGAETEALKSLPLQPWQMHILLVDDSETNRDITGMMLQQLGHQVTRADS  715
            G+LY   +Q +  +   ++ +  L PWQ++ILLVDD++ NRDI G ML  LG++VT A S
Sbjct  661  GKLYDLAQQLILCTPNMPVINNLLPPWQLQILLVDDADINRDIIGKMLVSLGQHVTIAAS  720

Query  716  GTTALAIGRQHRFDLVLMDIRMPVLDGLATTARWRHDPANIDSHCMITALSANASPDEQI  775
            +  AL++++Q+RFDLVL+DIRMP +DG+     W+++P N+D++CM+ ALSA+ + ++  
Sbjct  721  SNEALTLSQQQRFDLVLIDIRMPEIDGIECVRLWHDEPNNLDPDCMFVALSASVATEDIH  780

Query  776  KTSQAGMNHYLSKPVTLGQLAEMLDLTAQFQLERGV  811
            +  + G++HY++KPVTL+ LA  + ++A++QL R +
Sbjct  781  RCKKNGIHHYITKPVTLATLARYISIAAEYQLLRNI  816

52) y0513 in NC_004088


> U51927|1|G1|1498305|AAC44299.1|Salmonella_enterica_subsp._enterica_serovar_Typhimurium_LT2|-|1..2468|spiR|-|SpiR
Length=823

 Score =  501 bits (1889),  Expect = 7e-143, Method: Compositional matrix adjust.
 Identities = 375/816 (46%), Positives = 565/816 (70%), Gaps = 22/816 (2%)

Query  1    MTLLMGVTLTVIWLILIATTAFFSYENTRQILINELTHMASMRADLSNHQFEGAERDAAS  60
            +T+L  +T  +IWL+ + T+A++S  + RQ +I++L+ ++ M   LSN++FE AERDA +
Sbjct  18   LTFLFLLTTIIIWLLSVLTAAYISMVQKRQHIIEDLSVLSEMNIVLSNQRFEEAERDAKN  77

Query  61   LI---SRRESLQSTSPLPEISIKHYDSYYIPFNLDSCN--INQHKNDLWIIQAYGTAGQT  115
            L+   S    ++    +PE+S +H     ++    +C   +N +K+ L ++Q+ +   ++
Sbjct  78   LMYQCSLATEIHHNDIFPEVS-RH-----LSVGPSNCTPTLNGEKHRL-FLQSSDIDENS  130

Query  116  YYLDSFIIKQKEGIVLFPPQKSSSDYLNQRRKDLLLLPKFPTHNNIYWGAPTYTPQGGWH  175
            +  DSFI+++K+ I L++ +++S DY   +      +P +PTH  +YW+ P Y    GWH
Sbjct  131  FRRDSFILNHKNEISLLSTDNPS-DYSTLQPLTRKSFPLYPTHAGFYWSEPEYINGKGWH  189

Query  176  VSVAVCDKVGTLAGFALKLNDLIAYNHPVEQRDINLLLDKNGELLPISQQATSSNQLHEI  235
             SVAV D+ G +   ++KL DLI+ +H   +  I + LD+N +LLP+S  +      + I
Sbjct  190  ASVAVADQQGVFFEVTVKLPDLITKSHLPLDDSIRVWLDQNNHLLPFSYIP------QKI  243

Query  236  LNQLKNSKLHDGWQQTPDYLVLRTQLKGPGWQQLVIYPRMGFAWEALKPAlyqlpfalai  295
              QL N  LHDGWQQ P++L+LRT L GPGW  + +YP   +    LK  L Q+PF+L+ 
Sbjct  244  RTQLENVTLHDGWQQIPGFLILRTTLHGPGWSLVTLYPYGNLHNRILKIILQQIPFTLTA  303

Query  296  lllltsvlslllryylaiplWNFINIIGATGPQAMEPRLPINRIDELGHIARAYNNLLDT  355
            L+L+TS +  LL+  LA PLW F+++I  T+  ++  RLP +R+DEL+ IA A+N+LLDT
Sbjct  304  LVLMTSAFCWLLHRSLAKPLWRFVDVINKTATAPLSTRLPAQRLDELDSIAGAFNQLLDT  363

Query  356  LNEQYDTLEMKVKertlalaeakraaeqanrrKSDHLTTISHEIRTPLNGALGAVELLQN  415
            L+ QYD LE KV ERT AL EAK+ AE+AN+RKS HLT ISHE+RTP+NG LGA+ELLQ 
Sbjct  364  LQVQYDNLENKVAERTQALNEAKKRAERANKRKSIHLTVISHELRTPMNGVLGAIELLQT  423

Query  416  TPLDAGQMRLAETAHQCslsllaiinnllDFSRIESGQMTLSLEKTALLPLLDQAMLTIH  475
            TPL+  Q  LA+TA++C+LSLLAIINNLLDFSRIESG+ TL +E TALLPLLDQAM TI+
Sbjct  424  TPLNIEQQGLADTARNCTLSLLAIINNLLDFSRIESGHFTLHMEETALLPLLDQAMQTIQ  483

Query  476  SQALSKSLALSTFISANIPLELELDTLRLRQILVNLLGNAVKFTPQGRIQLRVRRQNQTL  535
            + A SK L+L TF++ ++PL ++ D++RLRQILVNLLGNAVKFT  G I+L V+R+++ L
Sbjct  484  GPAQSKKLSLRTFVGQHVPLYFHTDSIRLRQILVNLLGNAVKFTETGGIRLTVKRHEEQL  543

Query  536  CFTVEDTGCGIDVQHQQTIFQPFMQTSDHEQGTGLGLAIADNLAKMMGGHLTVFSEPGQG  595
             F V D+G GI++Q+Q  IF +F Q+  + QGTG+GL+IA +LAKMMGG+LT+ S PG G
Sbjct  544  IFLVSDSGKGIEIQQQSQIFTAFYQADTNSQGTGIGLTIASSLAKMMGGNLTLKSVPGVG  603

Query  596  SCFSLCLPFNAITPPMPFHGELFAPQRLHAQLSAWGMTCQPELANQPSRHFVDNALCYLP  655
            +C SL LP++   PP P+ G L AP  LH QL+ WG+  +P    +    +++  L Y++
Sbjct  604  TCVSLVLPLQEYQPPQPIKGTLSAPFCLHRQLACWGIRGEP---PHQQNALLNAELLYFS  660

Query  656  GRLYAKLKQYLQGAETEALKSLPLQPWQMHILLVDDSETNRDITGMMLQQLGHQVTRADS  715
            G+LY   +Q +  +   ++ +  L PWQ++ILLVDD++ NRDI G ML  LG++VT A S
Sbjct  661  GKLYDLAQQLILCTPNMPVINNLLPPWQLQILLVDDADINRDIIGKMLVSLGQHVTIAAS  720

Query  716  GTTALAIGRQHRFDLVLMDIRMPVLDGLATTARWRHDPANIDSHCMITALSANASPDEQI  775
            +  AL++++Q+RFDLVL+DIRMP +DG+     W+++P N+D++CM+ ALSA+ + ++  
Sbjct  721  SNEALTLSQQQRFDLVLIDIRMPEIDGIECVRLWHDEPNNLDPDCMFVALSASVATEDIH  780

Query  776  KTSQAGMNHYLSKPVTLGQLAEMLDLTAQFQLERGV  811
            +  + G++HY++KPVTL+ LA  + ++A++QL R +
Sbjct  781  RCKKNGIHHYITKPVTLATLARYISIAAEYQLLRNI  816

53) YPK_3918 in NC_010465


> U51927|1|G1|1498305|AAC44299.1|Salmonella_enterica_subsp._enterica_serovar_Typhimurium_LT2|-|1..2468|spiR|-|SpiR
Length=823

 Score =  498 bits (1878),  Expect = 6e-142, Method: Compositional matrix adjust.
 Identities = 370/797 (47%), Positives = 556/797 (70%), Gaps = 24/797 (3%)

Query  31   AFFSYENTRQILINELTHMASMRADLSNHQFEGAERDAASLI---SRRESLQNTSPLPEI  87
            A++S  + RQ +I++L+ ++ M   LSN++FE AERDA +L+   S    +++   +PE+
Sbjct  38   AYISMVQKRQHIIEDLSVLSEMNIVLSNQRFEEAERDAKNLMYQCSLATEIHHNDIFPEV  97

Query  88   SIKHYDSCYIPFNLDSCN--INQHKNDLWIIQAYGTAGQTYYLDSFIIKQKEGIVLFPPQ  145
            S +H     ++    +C   +N +K+ L ++Q+ +   +++  DSFI+++K+ I L++ +
Sbjct  98   S-RH-----LSVGPSNCTPTLNGEKHRL-FLQSSDIDENSFRRDSFILNHKNEISLLSTD  150

Query  146  KSSSDYLNQRRKDLLLLPKFPTHNNIYWGAPTYTPQGGWHVSVAVCDKVGTLAGFALKLN  205
            ++S DY   +      +P +PTH  +YW+ P Y    GWH SVAV D+ G +   ++KL 
Sbjct  151  NPS-DYSTLQPLTRKSFPLYPTHAGFYWSEPEYINGKGWHASVAVADQQGVFFEVTVKLP  209

Query  206  DLIAYNHPVEQRDINLLLDKNGELLPISQQATSSNQLHEILNQLKNSKLHDGWQQTPDYL  265
            DLI+ +H   +  I + LD+N +LLP+S  +      + I  QL N  LHDGWQQ P++L
Sbjct  210  DLITKSHLPLDDSIRVWLDQNNHLLPFSYIP------QKIRTQLENVTLHDGWQQIPGFL  263

Query  266  VLRTQLKGPGWQQLVIYPRIGFAWEALKPALYQLPFalvilllltsvlslllryylaipl  325
            +LRT L GPGW  + +YP   +    LK  L Q+PF+L  L+L+TS +  LL+  LA PL
Sbjct  264  ILRTTLHGPGWSLVTLYPYGNLHNRILKIILQQIPFTLTALVLMTSAFCWLLHRSLAKPL  323

Query  326  WNFINIIGATGPQAMEPRLPINRIDELGHIARAYNNLLDTLNEQYDTLEMKVkertlala  385
            W F+++I  T+  ++  RLP +R+DEL+ IA A+N+LLDTL+ QYD LE KV ERT AL 
Sbjct  324  WRFVDVINKTATAPLSTRLPAQRLDELDSIAGAFNQLLDTLQVQYDNLENKVAERTQALN  383

Query  386  kakraaeqanrrkSDHLTTISHEIRTPLNGALGAVELLQNTPLDAGQMRLAETAHQCsls  445
             AK+ AE+AN+RKS HLT ISHE+RTP+NG LGA+ELLQ TPL+  Q  LA+TA++C+LS
Sbjct  384  EAKKRAERANKRKSIHLTVISHELRTPMNGVLGAIELLQTTPLNIEQQGLADTARNCTLS  443

Query  446  llaiinnllDFSRIESGQMTLSLEKTALLPLLDQAMLTIHSQALSKSLALSTFISADIPL  505
            LLAIINNLLDFSRIESG+ TL +E TALLPLLDQAM TI++ A SK L+L TF++ ++PL
Sbjct  444  LLAIINNLLDFSRIESGHFTLHMEETALLPLLDQAMQTIQGPAQSKKLSLRTFVGQHVPL  503

Query  506  ELELDTLRLRQILVNLLGNAVKFTPQGRIQLRVRRQNQTLCFTVEDTGCGIDVQHQQTIF  565
             ++ D++RLRQILVNLLGNAVKFT  G I+L V+R+++ L F V D+G GI++Q+Q  IF
Sbjct  504  YFHTDSIRLRQILVNLLGNAVKFTETGGIRLTVKRHEEQLIFLVSDSGKGIEIQQQSQIF  563

Query  566  QPFMQTSDHEQGTGLGLAIADNLAKMMGGHLTVFSEPGQGSCFSLCLPFNAITPPMPFHG  625
             +F Q+  + QGTG+GL+IA +LAKMMGG+LT+ S PG G+C SL LP++   PP P+ G
Sbjct  564  TAFYQADTNSQGTGIGLTIASSLAKMMGGNLTLKSVPGVGTCVSLVLPLQEYQPPQPIKG  623

Query  626  ELFAPQRLHAQLSAWGMTCQPELANQPSRYFVDNALCYLPGRLYANLKQ-YLQGAETEVL  684
             L AP  LH QL+ WG+  +P   +++   +++  L Y++G+LY   +Q  L  ++  V+
Sbjct  624  TLSAPFCLHRQLACWGIRGEPPHQQNA---LLNAELLYFSGKLYDLAQQLILCTPNMPVI  680

Query  685  KSLPLQPWQMHILLVDDSETNRDITGMMLQQLGHQVTLADSGTTALAIGRQHRFDLVLMD  744
            ++L L PWQ++ILLVDD++ NRDI G ML  LG++VT+A S+  AL++++Q+RFDLVL+D
Sbjct  681  NNL-LPPWQLQILLVDDADINRDIIGKMLVSLGQHVTIAASSNEALTLSQQQRFDLVLID  739

Query  745  IRMPVLDGLATTARWRHDPANIDSHCMITALSANASPDEQIKTSQAGMNHYLSKPVTLGQ  804
            IRMP +DG+     W+++P N+D++CM+ ALSA+ + ++  +  + G++HY++KPVTL+ 
Sbjct  740  IRMPEIDGIECVRLWHDEPNNLDPDCMFVALSASVATEDIHRCKKNGIHHYITKPVTLAT  799

Query  805  LAEMLDLTAQFQLERGV  821
            LA  + ++A++QL R +
Sbjct  800  LARYISIAAEYQLLRNI  816

54) YPTB0311 in NC_006155


> U51927|1|G1|1498305|AAC44299.1|Salmonella_enterica_subsp._enterica_serovar_Typhimurium_LT2|-|1..2468|spiR|-|SpiR
Length=823

 Score =  497 bits (1875),  Expect = 9e-142, Method: Compositional matrix adjust.
 Identities = 370/797 (47%), Positives = 555/797 (70%), Gaps = 24/797 (3%)

Query  31   AFFSYENTRQILINELTHMASMRADLSNHQFEGAERDAASLI---SRRESLQSTSPLPEI  87
            A++S  + RQ +I++L+ ++ M   LSN++FE AERDA +L+   S    ++    +PE+
Sbjct  38   AYISMVQKRQHIIEDLSVLSEMNIVLSNQRFEEAERDAKNLMYQCSLATEIHHNDIFPEV  97

Query  88   SIKHYDSCYIPFNLDSCN--INQHKNDLWIIQAYGTAGQTYYLDSFIIKQKEGIVLFPPQ  145
            S +H     ++    +C   +N +K+ L ++Q+ +   +++  DSFI+++K+ I L++ +
Sbjct  98   S-RH-----LSVGPSNCTPTLNGEKHRL-FLQSSDIDENSFRRDSFILNHKNEISLLSTD  150

Query  146  KSSSDYLNQRRKDLLLLPKFPTHNNIYWGAPTYTPQGGWHVSVAVCDKVGTLAGFALKLN  205
            ++S DY   +      +P +PTH  +YW+ P Y    GWH SVAV D+ G +   ++KL 
Sbjct  151  NPS-DYSTLQPLTRKSFPLYPTHAGFYWSEPEYINGKGWHASVAVADQQGVFFEVTVKLP  209

Query  206  DLIAYNHPVEQRDINLLLDKNGELLPISQQATSSNQLHEILNQLKNSKLHDGWQQTPDYL  265
            DLI+ +H   +  I + LD+N +LLP+S  +      + I  QL N  LHDGWQQ P++L
Sbjct  210  DLITKSHLPLDDSIRVWLDQNNHLLPFSYIP------QKIRTQLENVTLHDGWQQIPGFL  263

Query  266  VLRTQLKGPGWQQLVIYPRIGFAWEALKPALYQLPFalvilllltsvlslllryylaipl  325
            +LRT L GPGW  + +YP   +    LK  L Q+PF+L  L+L+TS +  LL+  LA PL
Sbjct  264  ILRTTLHGPGWSLVTLYPYGNLHNRILKIILQQIPFTLTALVLMTSAFCWLLHRSLAKPL  323

Query  326  WNFINIIGATGPQAMEPRLPINRIDELGHIARAYNNLLDTLNEQYDTLEMKVkertlala  385
            W F+++I  T+  ++  RLP +R+DEL+ IA A+N+LLDTL+ QYD LE KV ERT AL 
Sbjct  324  WRFVDVINKTATAPLSTRLPAQRLDELDSIAGAFNQLLDTLQVQYDNLENKVAERTQALN  383

Query  386  kakraaeqanrrkSDHLTTISHEIRTPLNGALGAVELLQNTPLDAGQMRLAETAHQCsls  445
             AK+ AE+AN+RKS HLT ISHE+RTP+NG LGA+ELLQ TPL+  Q  LA+TA++C+LS
Sbjct  384  EAKKRAERANKRKSIHLTVISHELRTPMNGVLGAIELLQTTPLNIEQQGLADTARNCTLS  443

Query  446  llaiinnllDFSRIESGQMTLSLEKTALLPLLDQAMLTIHSQALSKSLALSTFISADIPL  505
            LLAIINNLLDFSRIESG+ TL +E TALLPLLDQAM TI++ A SK L+L TF++ ++PL
Sbjct  444  LLAIINNLLDFSRIESGHFTLHMEETALLPLLDQAMQTIQGPAQSKKLSLRTFVGQHVPL  503

Query  506  ELELDTLRLRQILVNLLGNAVKFTPQGRIQLRVRRQNQTLCFTVEDTGCGIDVQHQQTIF  565
             ++ D++RLRQILVNLLGNAVKFT  G I+L V+R+++ L F V D+G GI++Q+Q  IF
Sbjct  504  YFHTDSIRLRQILVNLLGNAVKFTETGGIRLTVKRHEEQLIFLVSDSGKGIEIQQQSQIF  563

Query  566  QPFMQTSDHEQGTGLGLAIADNLAKMMGGHLTVFSEPGQGSCFSLCLPFNAITPPMPFHG  625
             +F Q+  + QGTG+GL+IA +LAKMMGG+LT+ S PG G+C SL LP++   PP P+ G
Sbjct  564  TAFYQADTNSQGTGIGLTIASSLAKMMGGNLTLKSVPGVGTCVSLVLPLQEYQPPQPIKG  623

Query  626  ELFAPQRLHAQLSAWGMTCQPELANQPSRYFVDNALCYLPGRLYANLKQ-YLQGAETEVL  684
             L AP  LH QL+ WG+  +P   +++   +++  L Y++G+LY   +Q  L  ++  V+
Sbjct  624  TLSAPFCLHRQLACWGIRGEPPHQQNA---LLNAELLYFSGKLYDLAQQLILCTPNMPVI  680

Query  685  KSLPLQPWQMHILLVDDSETNRDITGMMLQQLGHQVTLADSGTTALAIGRQHRFDLVLMD  744
            ++L L PWQ++ILLVDD++ NRDI G ML  LG++VT+A S+  AL++++Q+RFDLVL+D
Sbjct  681  NNL-LPPWQLQILLVDDADINRDIIGKMLVSLGQHVTIAASSNEALTLSQQQRFDLVLID  739

Query  745  IRMPVLDGLATTARWRHDPANIDSHCMITALSANASPDEQIKTSQAGMNHYLSKPVTLGQ  804
            IRMP +DG+     W+++P N+D++CM+ ALSA+ + ++  +  + G++HY++KPVTL+ 
Sbjct  740  IRMPEIDGIECVRLWHDEPNNLDPDCMFVALSASVATEDIHRCKKNGIHHYITKPVTLAT  799

Query  805  LAEMLDLTAQFQLERGV  821
            LA  + ++A++QL R +
Sbjct  800  LARYISIAAEYQLLRNI  816

55) YPTS_0335 in NC_010634


> U51927|1|G1|1498305|AAC44299.1|Salmonella_enterica_subsp._enterica_serovar_Typhimurium_LT2|-|1..2468|spiR|-|SpiR
Length=823

 Score =  497 bits (1875),  Expect = 9e-142, Method: Compositional matrix adjust.
 Identities = 370/797 (47%), Positives = 555/797 (70%), Gaps = 24/797 (3%)

Query  31   AFFSYENTRQILINELTHMASMRADLSNHQFEGAERDAASLI---SRRESLQSTSPLPEI  87
            A++S  + RQ +I++L+ ++ M   LSN++FE AERDA +L+   S    ++    +PE+
Sbjct  38   AYISMVQKRQHIIEDLSVLSEMNIVLSNQRFEEAERDAKNLMYQCSLATEIHHNDIFPEV  97

Query  88   SIKHYDSCYIPFNLDSCN--INQHKNDLWIIQAYGTAGQTYYLDSFIIKQKEGIVLFPPQ  145
            S +H     ++    +C   +N +K+ L ++Q+ +   +++  DSFI+++K+ I L++ +
Sbjct  98   S-RH-----LSVGPSNCTPTLNGEKHRL-FLQSSDIDENSFRRDSFILNHKNEISLLSTD  150

Query  146  KSSSDYLNQRRKDLLLLPKFPTHNNIYWGAPTYTPQGGWHVSVAVCDKVGTLAGFALKLN  205
            ++S DY   +      +P +PTH  +YW+ P Y    GWH SVAV D+ G +   ++KL 
Sbjct  151  NPS-DYSTLQPLTRKSFPLYPTHAGFYWSEPEYINGKGWHASVAVADQQGVFFEVTVKLP  209

Query  206  DLIAYNHPVEQRDINLLLDKNGELLPISQQATSSNQLHEILNQLKNSKLHDGWQQTPDYL  265
            DLI+ +H   +  I + LD+N +LLP+S  +      + I  QL N  LHDGWQQ P++L
Sbjct  210  DLITKSHLPLDDSIRVWLDQNNHLLPFSYIP------QKIRTQLENVTLHDGWQQIPGFL  263

Query  266  VLRTQLKGPGWQQLVIYPRIGFAWEALKPALYQLPFalvilllltsvlslllryylaipl  325
            +LRT L GPGW  + +YP   +    LK  L Q+PF+L  L+L+TS +  LL+  LA PL
Sbjct  264  ILRTTLHGPGWSLVTLYPYGNLHNRILKIILQQIPFTLTALVLMTSAFCWLLHRSLAKPL  323

Query  326  WNFINIIGATGPQAMEPRLPINRIDELGHIARAYNNLLDTLNEQYDTLEMKVkertlala  385
            W F+++I  T+  ++  RLP +R+DEL+ IA A+N+LLDTL+ QYD LE KV ERT AL 
Sbjct  324  WRFVDVINKTATAPLSTRLPAQRLDELDSIAGAFNQLLDTLQVQYDNLENKVAERTQALN  383

Query  386  kakraaeqanrrkSDHLTTISHEIRTPLNGALGAVELLQNTPLDAGQMRLAETAHQCsls  445
             AK+ AE+AN+RKS HLT ISHE+RTP+NG LGA+ELLQ TPL+  Q  LA+TA++C+LS
Sbjct  384  EAKKRAERANKRKSIHLTVISHELRTPMNGVLGAIELLQTTPLNIEQQGLADTARNCTLS  443

Query  446  llaiinnllDFSRIESGQMTLSLEKTALLPLLDQAMLTIHSQALSKSLALSTFISADIPL  505
            LLAIINNLLDFSRIESG+ TL +E TALLPLLDQAM TI++ A SK L+L TF++ ++PL
Sbjct  444  LLAIINNLLDFSRIESGHFTLHMEETALLPLLDQAMQTIQGPAQSKKLSLRTFVGQHVPL  503

Query  506  ELELDTLRLRQILVNLLGNAVKFTPQGRIQLRVRRQNQTLCFTVEDTGCGIDVQHQQTIF  565
             ++ D++RLRQILVNLLGNAVKFT  G I+L V+R+++ L F V D+G GI++Q+Q  IF
Sbjct  504  YFHTDSIRLRQILVNLLGNAVKFTETGGIRLTVKRHEEQLIFLVSDSGKGIEIQQQSQIF  563

Query  566  QPFMQTSDHEQGTGLGLAIADNLAKMMGGHLTVFSEPGQGSCFSLCLPFNAITPPMPFHG  625
             +F Q+  + QGTG+GL+IA +LAKMMGG+LT+ S PG G+C SL LP++   PP P+ G
Sbjct  564  TAFYQADTNSQGTGIGLTIASSLAKMMGGNLTLKSVPGVGTCVSLVLPLQEYQPPQPIKG  623

Query  626  ELFAPQRLHAQLSAWGMTCQPELANQPSRYFVDNALCYLPGRLYANLKQ-YLQGAETEVL  684
             L AP  LH QL+ WG+  +P   +++   +++  L Y++G+LY   +Q  L  ++  V+
Sbjct  624  TLSAPFCLHRQLACWGIRGEPPHQQNA---LLNAELLYFSGKLYDLAQQLILCTPNMPVI  680

Query  685  KSLPLQPWQMHILLVDDSETNRDITGMMLQQLGHQVTLADSGTTALAIGRQHRFDLVLMD  744
            ++L L PWQ++ILLVDD++ NRDI G ML  LG++VT+A S+  AL++++Q+RFDLVL+D
Sbjct  681  NNL-LPPWQLQILLVDDADINRDIIGKMLVSLGQHVTIAASSNEALTLSQQQRFDLVLID  739

Query  745  IRMPVLDGLATTARWRHDPANIDSHCMITALSANASPDEQIKTSQAGMNHYLSKPVTLGQ  804
            IRMP +DG+     W+++P N+D++CM+ ALSA+ + ++  +  + G++HY++KPVTL+ 
Sbjct  740  IRMPEIDGIECVRLWHDEPNNLDPDCMFVALSASVATEDIHRCKKNGIHHYITKPVTLAT  799

Query  805  LAEMLDLTAQFQLERGV  821
            LA  + ++A++QL R +
Sbjct  800  LARYISIAAEYQLLRNI  816

56) YpAngola_A3944 in NC_010159


> U51927|1|G1|1498305|AAC44299.1|Salmonella_enterica_subsp._enterica_serovar_Typhimurium_LT2|-|1..2468|spiR|-|SpiR
Length=823

 Score =  481 bits (1812),  Expect = 8e-137, Method: Compositional matrix adjust.
 Identities = 362/778 (47%), Positives = 538/778 (70%), Gaps = 22/778 (2%)

Query  1    MASMRADLSNHQFEGAERDAASLI---SRRESLQSTSPLPEISIKHYDSYYIPFNLDSCN  57
            ++ M   LSN++FE AERDA +L+   S    ++    +PE+S +H     ++    +C 
Sbjct  56   LSEMNIVLSNQRFEEAERDAKNLMYQCSLATEIHHNDIFPEVS-RH-----LSVGPSNCT  109

Query  58   --INQHKNDLWIIQAYGTAGQTYYLDSFIIKQKEGIVLFPPQKSSSDYLNQRRKDLLLLP  115
              +N +K+ L ++Q+ +   +++  DSFI+++K+ I L++ +++S DY   +      +P
Sbjct  110  PTLNGEKHRL-FLQSSDIDENSFRRDSFILNHKNEISLLSTDNPS-DYSTLQPLTRKSFP  167

Query  116  KFPTHNNIYWGAPTYTPQGGWHVSVAVCDKVGTLAGFALKLNDLIAYNHPVEQRDINLLL  175
             +PTH  +YW+ P Y    GWH SVAV D+ G +   ++KL DLI+ +H   +  I + L
Sbjct  168  LYPTHAGFYWSEPEYINGKGWHASVAVADQQGVFFEVTVKLPDLITKSHLPLDDSIRVWL  227

Query  176  DKNGELLPISQQATSSNQLHEILNQLKNSKLHDGWQQTPDYLVLRTQLKGPGWQQLVIYP  235
            D+N +LLP+S  +      + I  QL N  LHDGWQQ P++L+LRT L GPGW  + +YP
Sbjct  228  DQNNHLLPFSYIP------QKIRTQLENVTLHDGWQQIPGFLILRTTLHGPGWSLVTLYP  281

Query  236  RMGFAWEALKPAlyqlpfalailllltsvlslllryylaiplWNFINIIGATGPQAMEPR  295
               +    LK  L Q+PF+L+ L+L+TS +  LL+  LA PLW F+++I  T+  ++  R
Sbjct  282  YGNLHNRILKIILQQIPFTLTALVLMTSAFCWLLHRSLAKPLWRFVDVINKTATAPLSTR  341

Query  296  LPINRIDELGHIARAYNNLLDTLNEQYDTLEMKVKertlalaeakraaeqanrrKSDHLT  355
            LP +R+DEL+ IA A+N+LLDTL+ QYD LE KV ERT AL EAK+ AE+AN+RKS HLT
Sbjct  342  LPAQRLDELDSIAGAFNQLLDTLQVQYDNLENKVAERTQALNEAKKRAERANKRKSIHLT  401

Query  356  TISHEIRTPLNGALGAVELLQNTPLDAGQMRLAETAHQCslsllaiinnllDFSRIESGQ  415
             ISHE+RTP+NG LGA+ELLQ TPL+  Q  LA+TA++C+LSLLAIINNLLDFSRIESG+
Sbjct  402  VISHELRTPMNGVLGAIELLQTTPLNIEQQGLADTARNCTLSLLAIINNLLDFSRIESGH  461

Query  416  MTLSLEKTALLPLLDQAMLTIHSQALSKSLALSTFISANIPLELELDTLRLRQILVNLLG  475
             TL +E TALLPLLDQAM TI++ A SK L+L TF++ ++PL ++ D++RLRQILVNLLG
Sbjct  462  FTLHMEETALLPLLDQAMQTIQGPAQSKKLSLRTFVGQHVPLYFHTDSIRLRQILVNLLG  521

Query  476  NAVKFTPQGRIQLRVRRQNQTLCFTVEDTGCGIDVQHQQTIFQPFMQTSDHEQGTGLGLA  535
            NAVKFT  G I+L V+R+++ L F V D+G GI++Q+Q  IF +F Q+  + QGTG+GL+
Sbjct  522  NAVKFTETGGIRLTVKRHEEQLIFLVSDSGKGIEIQQQSQIFTAFYQADTNSQGTGIGLT  581

Query  536  IADNLAKMMGGHLTVFSEPGQGSCFSLCLPFNAITPPMPFHGELFAPQRLHAQLSAWGMT  595
            IA +LAKMMGG+LT+ S PG G+C SL LP++   PP P+ G L AP  LH QL+ WG+ 
Sbjct  582  IASSLAKMMGGNLTLKSVPGVGTCVSLVLPLQEYQPPQPIKGTLSAPFCLHRQLACWGIR  641

Query  596  CQPELANQPSRHFVDNALCYLPGRLYAKLKQYLQGAETEALKSLPLQPWQMHILLVDDSE  655
             +P    +    +++  L Y++G+LY   +Q +  +   ++ +  L PWQ++ILLVDD++
Sbjct  642  GEP---PHQQNALLNAELLYFSGKLYDLAQQLILCTPNMPVINNLLPPWQLQILLVDDAD  698

Query  656  TNRDITGMMLQQLGHQVTRADSGTTALAIGRQHRFDLVLMDIRMPVLDGLATTARWRHDP  715
             NRDI G ML  LG++VT A S+  AL++++Q+RFDLVL+DIRMP +DG+     W+++P
Sbjct  699  INRDIIGKMLVSLGQHVTIAASSNEALTLSQQQRFDLVLIDIRMPEIDGIECVRLWHDEP  758

Query  716  ANIDSHCMITALSANASPDEQIKTSQAGMNHYLSKPVTLGQLAEMLDLTAQFQLERGV  773
             N+D++CM+ ALSA+ + ++  +  + G++HY++KPVTL+ LA  + ++A++QL R +
Sbjct  759  NNLDPDCMFVALSASVATEDIHRCKKNGIHHYITKPVTLATLARYISIAAEYQLLRNI  816

57) YpsIP31758_3832 in NC_009708


> U51927|1|G1|1498305|AAC44299.1|Salmonella_enterica_subsp._enterica_serovar_Typhimurium_LT2|-|1..2468|spiR|-|SpiR
Length=823

 Score =  475 bits (1792),  Expect = 3e-135, Method: Compositional matrix adjust.
 Identities = 366/796 (46%), Positives = 549/796 (69%), Gaps = 22/796 (2%)

Query  31   AFFSYENTRQILINELTHMASMRADLSNHQFEGAERDAASLI---SRRESLQSTSPLPEI  87
            A++S  + RQ +I++L+ ++ M   LSN++FE AERDA +L+   S    ++    +PE+
Sbjct  38   AYISMVQKRQHIIEDLSVLSEMNIVLSNQRFEEAERDAKNLMYQCSLATEIHHNDIFPEV  97

Query  88   SIKHYDSCYIPFNLDSCN--INQHKNDLWIIQAYGTAGQTYYLDSFIIKQKEGIVLFPPQ  145
            S +H     ++    +C   +N +K+ L ++Q+ +   +++  DSFI+++K+ I L++ +
Sbjct  98   S-RH-----LSVGPSNCTPTLNGEKHRL-FLQSSDIDENSFRRDSFILNHKNEISLLSTD  150

Query  146  KSSSDYLNQRRKDLLLLPKFPTHNNIYWGAPTYTPQGGWHVSVAVCDKVGTLAGFALKLN  205
            ++S DY   +      +P +PTH  +YW+ P Y    GWH SVAV D+ G +   ++KL 
Sbjct  151  NPS-DYSTLQPLTRKSFPLYPTHAGFYWSEPEYINGKGWHASVAVADQQGVFFEVTVKLP  209

Query  206  DLIAYNHPVEQRDINLLLDKNGELLPISQQATSSNQLHEILNQLKNSKLHDGWQQTPDYL  265
            DLI+ +H   +  I + LD+N +LLP+S  +      + I  QL N  LHDGWQQ P++L
Sbjct  210  DLITKSHLPLDDSIRVWLDQNNHLLPFSYIP------QKIRTQLENVTLHDGWQQIPGFL  263

Query  266  VLRTQLKGPGWQQLVIYPRIGFAWEALKPALYQLPFalvilllltsvlslllryylaipl  325
            +LRT L GPGW  + +YP   +    LK  L Q+PF+L  L+L+TS +  LL+  LA PL
Sbjct  264  ILRTTLHGPGWSLVTLYPYGNLHNRILKIILQQIPFTLTALVLMTSAFCWLLHRSLAKPL  323

Query  326  WNFINIIGATGPQAMEPRLPINRIDELGHIARAYNNLLDTLNEQYDTLEMKVkertlala  385
            W F+++I  T+  ++  RLP +R+DEL+ IA A+N+LLDTL+ QYD LE KV ERT AL 
Sbjct  324  WRFVDVINKTATAPLSTRLPAQRLDELDSIAGAFNQLLDTLQVQYDNLENKVAERTQALN  383

Query  386  kakraaeqanrrkSDHLTTISHEIRTPLNGALGAVELLQNTPLDAGQMRLAETAHQCsls  445
             AK+ AE+AN+RKS HLT ISHE+RTP+NG LGA+ELLQ TPL+  Q  LA+TA++C+LS
Sbjct  384  EAKKRAERANKRKSIHLTVISHELRTPMNGVLGAIELLQTTPLNIEQQGLADTARNCTLS  443

Query  446  llaiinnllDFSRIESGQMtlslkktallpllDQAMLTIHSQALSKSLALSTFISADIPL  505
            LLAIINNLLDFSRIESG+ TL +  TALLPLLDQAM TI++ A SK L+L TF++ ++PL
Sbjct  444  LLAIINNLLDFSRIESGHFTLHMEETALLPLLDQAMQTIQGPAQSKKLSLRTFVGQHVPL  503

Query  506  ELELDTLRLRQILVNLLGNAVKFTPQGRIQLRVRRQNQTLCFTVEDTGCGIDVQHQQTIF  565
             ++ D++RLRQILVNLLGNAVKFT  G I+L V+R+++ L F V D+G GI++Q+Q  IF
Sbjct  504  YFHTDSIRLRQILVNLLGNAVKFTETGGIRLTVKRHEEQLIFLVSDSGKGIEIQQQSQIF  563

Query  566  QPFMQTSDHEQGTGLGLAIADNLAKMMGGHLTVFSEPGQGSCFSLCLPFNAITPPIPFHG  625
             +F Q+  + QGTG+GL+IA +LAKMMGG+LT+ S PG G+C SL LP++   PP P+ G
Sbjct  564  TAFYQADTNSQGTGIGLTIASSLAKMMGGNLTLKSVPGVGTCVSLVLPLQEYQPPQPIKG  623

Query  626  ELFAPQRLHAQLSAWGMTCQPELTNQPSRHFVDNALCYLPGRLYTNLKQYLQGAETEALK  685
             L AP  LH QL+ WG+  +P    +    +++  L Y++G+LY   +Q +  +   ++ 
Sbjct  624  TLSAPFCLHRQLACWGIRGEP---PHQQNALLNAELLYFSGKLYDLAQQLILCTPNMPVI  680

Query  686  SLPLQPWQMHILLVDDSETNRDITGMMLQQLGHQVTRADSGTTALAIGRQHRFDLVLMDI  745
            +  L PWQ++ILLVDD++ NRDI G ML  LG++VT A S+  AL++++Q+RFDLVL+DI
Sbjct  681  NNLLPPWQLQILLVDDADINRDIIGKMLVSLGQHVTIAASSNEALTLSQQQRFDLVLIDI  740

Query  746  RMPVLDGLATTARWRHDPANIDSHCMITALSANASPDEQIKTNQAGMNHYLSKPVTLGQL  805
            RMP +DG+     W+++P N+D++CM+ ALSA+ + ++  + ++ G++HY++KPVTL+ L
Sbjct  741  RMPEIDGIECVRLWHDEPNNLDPDCMFVALSASVATEDIHRCKKNGIHHYITKPVTLATL  800

Query  806  AEMLDLTAQFQLERGV  821
            A  + ++A++QL R +
Sbjct  801  ARYISIAAEYQLLRNI  816

58) Y11_35181 in NC_017564


> U51927|1|G1|1498305|AAC44299.1|Salmonella_enterica_subsp._enterica_serovar_Typhimurium_LT2|-|1..2468|spiR|-|SpiR
Length=823

 Score =  453 bits (1705),  Expect = 3e-128, Method: Compositional matrix adjust.
 Identities = 362/825 (44%), Positives = 544/825 (66%), Gaps = 42/825 (5%)

Query  22   IWLISIAMTAFFSYEDTRQRLVSELTHMASLRADLSNYQFEGAERDALSLI------NRQ  75
            IWL+S+  +A++S  + RQ+++ +L+ ++ +   LSN +FE AERDA +L+         
Sbjct  29   IWLLSVLTAAYISMVQKRQHIIEDLSVLSEMNIVLSNQRFEEAERDAKNLMYQCSLATEI  88

Query  76   DHNQMSWGFPIPIKNESVKNNTLINSITCSPT--QSKHDLQIKQAYGTSGQTYYLDSFAI  133
            +HN++   FP       V  +  + +  C+PT    KH L + Q+ +   +++  DSF +
Sbjct  89   HHNDI---FP------EVSRHLSVGPSNCTPTLNGEKHRL-FLQSSDIDENSFRRDSFIL  138

Query  134  KNNDGITIFKPQNVSSDYLKQRRKELLLLPIFPTHNNIFWGMPTYTQQNGWHVSVAACDQ  193
            ++++ I+++  +N +SDY   +      +P++PTH  ++W+ P Y + +GWH SVA  DQ
Sbjct  139  NHKNEISLLSTDN-PSDYSTLQPLTRKSFPLYPTHAGFYWSEPEYINGKGWHASVAVADQ  197

Query  194  MGSLAGFSLKLNELVTNNQ-SFDQRDINllldkegkllplSQQNIPSNQLYEILR-QLKN  251
             G +   ++KL +L+T+++ ++D+             L  +++ +P + + + +R QL N
Sbjct  198  QGVFFEVTVKLPDLITKSHLPLDDS--------IRVWLDQNNHLLPFSYIPQKIRTQLEN  249

Query  252  IHLHDGWQQTPDYLVLRTQLKGPGWQQLVIYPRIGFAWEAAKPAlhqlpfalailllltl  311
            + LHDGWQQ P++L+LRT L GPGW  + +YP   +     K  L+Q+PF+L+ L+L+T 
Sbjct  250  VTLHDGWQQIPGFLILRTTLHGPGWSLVTLYPYGNLHNRILKIILQQIPFTLTALVLMTS  309

Query  312  alslllryylaiplWNFVNIIGSTGPQAMEPRLPVKRMDELGHIARAYNGLLDNLNEQYD  371
            A+  LL+  LA PLW FV++I  T+  ++  RLP +R+DEL+ IA A+N LLD L+ QYD
Sbjct  310  AFCWLLHRSLAKPLWRFVDVINKTATAPLSTRLPAQRLDELDSIAGAFNQLLDTLQVQYD  369

Query  372  TLEMKVKERTLALAKSKLAAEQANHRKSIHLTTISHEIRTPLNGALGAVELLQNTPLAPE  431
             LE KV ERT AL  +K  AE+AN RKSIHLT ISHE+RTP+NG LGA+ELLQ TPL  E
Sbjct  370  NLENKVAERTQALNEAKKRAERANKRKSIHLTVISHELRTPMNGVLGAIELLQTTPLNIE  429

Query  432  QYQLAETARQCSHSLLAIINNLLDFSRIESGQLTLSQEKTALLPLLDQAMLTIHSQVLNK  491
            Q  LA+TAR+C+ SLLAIINNLLDFSRIESG++TL  E TALLPLLDQAM TI++   +K
Sbjct  430  QQGLADTARNCTLSLLAIINNLLDFSRIESGHFTLHMEETALLPLLDQAMQTIQGPAQSK  489

Query  492  PIALSTYVSSDVPLEIELDSQRIKQILVNLLGNAVKFTRQGHISLTVERKGQQLCFTVED  551
             ++L T+V+ +VPL ++ DS R++QILVNLLGNAVKFT  G I LTV R  +QL F V D
Sbjct  490  KLSLRTFVGQHVPLYFHTDSIRLRQILVNLLGNAVKFTETGGIRLTVKRHEEQLIFLVSD  549

Query  552  TGCGIDSQHQEKIFRPFIQTYDHRQGTGLGLTIADNLAKMMGGNITLYSKPNCGSRFSLT  611
            +G GI+ Q+Q +IF +F Q+  + QGTG+GLTIA +LAKMMGGN+TL S P  G+  SL 
Sbjct  550  SGKGIEIQQQSQIFTAFYQADTNSQGTGIGLTIASSLAKMMGGNLTLKSVPGVGTCVSLV  609

Query  612  LPFRGTTPVMSFKNVCYaapsslqaqlsaWGITCQPMNHKSISLPLGLFSDKELCYLPGR  671
            LP++   P  ++K    +AP  L+ QL+ WGI  +P ++++  L      + EL Y++G+
Sbjct  610  LPLQEYQPPQPIKGT-LSAPFCLHRQLACWGIRGEPPHQQNALL------NAELLYFSGK  662

Query  672  LYTKVKHYLDNKGCAppylqqiqhhlplqpwhMSILLVDDAETNRDITGMMLRQLGHQVT  731
            LY   ++ +    C+    +    +  L PW++ ILLVDDA+ NRDI G ML  LG++VT
Sbjct  663  LYDLAQQLI---LCT---PNMPVINNLLPPWQLQILLVDDADINRDIIGKMLVSLGQHVT  716

Query  732  LAESGEIALHIGQGQYFDLVLMDIRMPGMDGLTATQHWRNDTINLDNRCMITALSANTNP  791
            +A S++ AL ++Q Q FDLVL+DIRMP +DG+   + W+++  NLD  CM+ ALSA+   
Sbjct  717  IAASSNEALTLSQQQRFDLVLIDIRMPEIDGIECVRLWHDEPNNLDPDCMFVALSASVAT  776

Query  792  DEKIKAYQAGMNHYISKPVTFNQLAEVLDLTAQFQLERGINLTPQ  836
            ++  +  + G++HYI+KPVT+  LA  + ++A++QL R I+L  Q
Sbjct  777  EDIHRCKKNGIHHYITKPVTLATLARYISIAAEYQLLRNIELQEQ  821

59) YE105_C0310 in NC_015224


> U51927|1|G1|1498305|AAC44299.1|Salmonella_enterica_subsp._enterica_serovar_Typhimurium_LT2|-|1..2468|spiR|-|SpiR
Length=823

 Score =  452 bits (1704),  Expect = 3e-128, Method: Compositional matrix adjust.
 Identities = 362/825 (44%), Positives = 544/825 (66%), Gaps = 42/825 (5%)

Query  22   IWLISIAMTAFFSYEDTRQRLVSELTHMASLRADLSNYQFEGAERDALSLI------NRQ  75
            IWL+S+  +A++S  + RQ+++ +L+ ++ +   LSN +FE AERDA +L+         
Sbjct  29   IWLLSVLTAAYISMVQKRQHIIEDLSVLSEMNIVLSNQRFEEAERDAKNLMYQCSLATEI  88

Query  76   DHNQMSWGFPIPIKNESVKNNTLINSITCSPT--QSKHDLQIKQAYGTSGQTYYLDSFAI  133
            +HN++   FP       V  +  + +  C+PT    KH L + Q+ +   +++  DSF +
Sbjct  89   HHNDI---FP------EVSRHLSVGPSNCTPTLNGEKHRL-FLQSSDIDENSFRRDSFIL  138

Query  134  KNNDGITIFKPQNVSSDYLKQRRKELLLLPIFPTHNNIFWGMPTYTQQNGWHVSVAACDQ  193
            ++++ I+++  +N +SDY   +      +P++PTH  ++W+ P Y + +GWH SVA  DQ
Sbjct  139  NHKNEISLLSTDN-PSDYSTLQPLTRKSFPLYPTHAGFYWSEPEYINGKGWHASVAVADQ  197

Query  194  MGSLAGFSLKLNELVTNNQ-SFDQRDINllldkegkllplSQQNIPSNQLYEILR-QLKN  251
             G +   ++KL +L+T+++ ++D+             L  +++ +P + + + +R QL N
Sbjct  198  QGVFFEVTVKLPDLITKSHLPLDDS--------IRVWLDQNNHLLPFSYIPQKIRTQLEN  249

Query  252  IHLHDGWQQTPDYLVLRTQLKGPGWQQLVIYPRIGFAWEAAKPAlhqlpfalailllltl  311
            + LHDGWQQ P++L+LRT L GPGW  + +YP   +     K  L+Q+PF+L+ L+L+T 
Sbjct  250  VTLHDGWQQIPGFLILRTTLHGPGWSLVTLYPYGNLHNRILKIILQQIPFTLTALVLMTS  309

Query  312  alslllryylaiplWNFVNIIGSTGPQAMEPRLPVKRMDELGHIARAYNGLLDNLNEQYD  371
            A+  LL+  LA PLW FV++I  T+  ++  RLP +R+DEL+ IA A+N LLD L+ QYD
Sbjct  310  AFCWLLHRSLAKPLWRFVDVINKTATAPLSTRLPAQRLDELDSIAGAFNQLLDTLQVQYD  369

Query  372  TLEMKVKERTLALAKSKLAAEQANHRKSIHLTTISHEIRTPLNGALGAVELLQNTPLAPE  431
             LE KV ERT AL  +K  AE+AN RKSIHLT ISHE+RTP+NG LGA+ELLQ TPL  E
Sbjct  370  NLENKVAERTQALNEAKKRAERANKRKSIHLTVISHELRTPMNGVLGAIELLQTTPLNIE  429

Query  432  QYQLAETARQCSHSLLAIINNLLDFSRIESGQLTLSQEKTALLPLLDQAMLTIHSQVLNK  491
            Q  LA+TAR+C+ SLLAIINNLLDFSRIESG++TL  E TALLPLLDQAM TI++   +K
Sbjct  430  QQGLADTARNCTLSLLAIINNLLDFSRIESGHFTLHMEETALLPLLDQAMQTIQGPAQSK  489

Query  492  PIALSTYVSSDVPLEIELDSQRIKQILVNLLGNAVKFTRQGHISLTVERKGQQLCFTVED  551
             ++L T+V+ +VPL ++ DS R++QILVNLLGNAVKFT  G I LTV R  +QL F V D
Sbjct  490  KLSLRTFVGQHVPLYFHTDSIRLRQILVNLLGNAVKFTETGGIRLTVKRHEEQLIFLVSD  549

Query  552  TGCGIDSQHQEKIFRPFIQTYDHRQGTGLGLTIADNLAKMMGGNITLYSKPNCGSHFSLT  611
            +G GI+ Q+Q +IF +F Q+  + QGTG+GLTIA +LAKMMGGN+TL S P  G+  SL 
Sbjct  550  SGKGIEIQQQSQIFTAFYQADTNSQGTGIGLTIASSLAKMMGGNLTLKSVPGVGTCVSLV  609

Query  612  LPFRGTTPVMSFKNVCYaapsslqaqlsaWGITCQPMNHKSISLPLGLFSDKELCYLPGR  671
            LP++   P  ++K    +AP  L+ QL+ WGI  +P ++++  L      + EL Y++G+
Sbjct  610  LPLQEYQPPQPIKGT-LSAPFCLHRQLACWGIRGEPPHQQNALL------NAELLYFSGK  662

Query  672  LYTKVKHYLDNKGCAppylqqiqhhlplqpwhMSILLVDDAETNRDITGMMLRQLGHQVT  731
            LY   ++ +    C+    +    +  L PW++ ILLVDDA+ NRDI G ML  LG++VT
Sbjct  663  LYDLAQQLI---LCT---PNMPVINNLLPPWQLQILLVDDADINRDIIGKMLVSLGQHVT  716

Query  732  LAESGEIALHIGQGQYFDLVLMDIRMPGMDGLTATQHWRNDTINLDNRCMITALSANTNP  791
            +A S++ AL ++Q Q FDLVL+DIRMP +DG+   + W+++  NLD  CM+ ALSA+   
Sbjct  717  IAASSNEALTLSQQQRFDLVLIDIRMPEIDGIECVRLWHDEPNNLDPDCMFVALSASVAT  776

Query  792  DEKIKAYQAGMNHYISKPVTFNQLAEVLDLTAQFQLERGINLTPQ  836
            ++  +  + G++HYI+KPVT+  LA  + ++A++QL R I+L  Q
Sbjct  777  EDIHRCKKNGIHHYITKPVTLATLARYISIAAEYQLLRNIELQEQ  821