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Homologs of hrpL gene of U03854

protein-level

Hit (GenBank Accn)

Product

Source Genome

Eval.

Ident.(%)

1) Psyr_1217
( YP_234309.1 )

sigma-70 region 2:sigma-70 region 4

NC_007005
(Pseudomonas syringae B728a)

3e-83

2) hrpL
( YP_273553.1 )

RNA polymerase sigma factor HrpL

NC_005773
(Pseudomonas syringae 1448A)

2e-80

3) hrpL
( NP_791231.1 )

RNA polymerase sigma factor HrpL

NC_004578
(Pseudomonas syringae DC3000)

5e-79

4) H045_00150
( YP_007395602.1 )

sigma factor

NC_020209
(Pseudomonas poae RE*1-1-14)

6e-33

5) rspL
( YP_002870376.1 )

sigma factor

NC_012660
(Pseudomonas fluorescens SBW25)

8e-33

6) rspL
( YP_006322223.1 )

RNA polymerase sigma factor RspL

NC_017911
(Pseudomonas fluorescens A506)

6e-32

7) PSEBR_a5390
( YP_004356901.1 )

RNA polymerase sigma factor

NC_015379
(Pseudomonas brassicacearum NFM421)

6e-30

8) Marme_1067
( YP_004312178.1 )

ECF subfamily RNA polymerase sigma-24 subunit

NC_015276
(Marinomonas mediterranea MMB-1)

3e-28

9) hrpL
( YP_005210977.1 )

protein HrpL

NC_016830
(Pseudomonas fluorescens F113)

4e-28

10) H650_14875
( YP_008108775.1 )

hypothetical protein

NC_021500
(Enterobacter sp. R4-368)

3e-26

11) hrpL
( YP_050182.1 )

sigma factor

NC_004547
(Pectobacterium atrosepticum SCRI1043)

9e-26

12) PCC21_022820
( YP_006646938.1 )

sigma factor

NC_018525
(Pectobacterium carotovorum PCC21)

4e-25

13) PC1_2204
( YP_003017779.1 )

ECF subfamily RNA polymerase sigma-24 subunit

NC_012917
(Pectobacterium carotovorum PC1)

5e-25

14) D781_3946
( YP_007346321.1 )

RNA polymerase sigma factor, sigma-70 family

NC_020064
(Serratia marcescens FGI94)

7e-25

15) hrpL
( YP_005804083.1 )

RNA polymerase sigma factor HrpL

NC_017390
(Erwinia pyrifoliae DSM 12163)

8e-24

16) hrpL
( YP_002650066.1 )

hrp/hrc type III secretion system-Hrp/hrc secretion/translocation pathway-sigma factor

NC_012214
(Erwinia pyrifoliae Ep1/96)

8e-24

17) hrpL
( YP_005818263.1 )

hrp/hrc Type III secretion system-Hrp/hrc secretion/translocation pathway-sigma factor

NC_017445
(Erwinia sp. Ejp617)

8e-24

18) hrpL
( YP_003883238.1 )

RNA polymerase sigma-54 factor rpoN

NC_014500
(Dickeya dadantii 3937)

1e-23

19) hrpL
( YP_003539960.1 )

sigma factor HrpL

NC_013971
(Erwinia amylovora ATCC 49946)

1e-23

20) hrpL
( YP_003529894.1 )

RNA polymerase sigma factor HrpL

NC_013961
(Erwinia amylovora CFBP1430)

1e-23

21) Dd586_1890
( YP_003333454.1 )

ECF subfamily RNA polymerase sigma-24 subunit

NC_013592
(Dickeya dadantii Ech586)

4e-23

22) Ser39006_2911
( YP_008523293.1 )

RNA polymerase, sigma-24 subunit, ECF subfamily

NC_022268
(Serratia sp. ATCC 39006)

9e-23

23) Dd1591_1893
( YP_003004222.1 )

RNA polymerase, sigma-24 subunit, ECF subfamily

NC_012912
(Dickeya zeae Ech1591)

2e-20

• Sequence Alignments

1) Psyr_1217 in NC_007005


> U03854|1|G1|437296|AAA17652.1|Pseudomonas_syringae_pv._syringae_Pss61|+|21..575|hrpL|-|putative 
alternate sigma factor
Length=184

 Score =  300 bits (1125),  Expect = 3e-83, Method: Compositional matrix adjust.
 Identities = 178/184 (97%), Positives = 183/184 (99%), Gaps = 0/184 (0%)

Query  1    MLPNLVILDATEPRQPSSSAGIRQLTADQVQMLRAFIQKRVKNADDVDDILQCVFLEALR  60
            MLPNLVILD TEPR+PSSSAGIRQLTADQ+QMLRAFIQKRVKNADDVDDILQCVFLEALR
Sbjct  1    MLPNLVILDVTEPRKPSSSAGIRQLTADQIQMLRAFIQKRVKNADDVDDILQCVFLEALR  60

Query  61   NEHKFQHASKPQTWLCGIALNLIRNHFRKMYRQPYQESWEDEVHTDLEWNGDITHQVDGH  120
            NEHKFQHASKPQTWLCGIALNLIRNHFRKMYRQPYQESWED+VHTDLEW+GDITHQVDGH
Sbjct  61   NEHKFQHASKPQTWLCGIALNLIRNHFRKMYRQPYQESWEDDVHTDLEWHGDITHQVDGH  120

Query  121  RQLARVIEAIDCLPTNMQKVLEVSLEMDGNYQETANTLGVPIGTVRSRLSRARVQLKQHI  180
            RQLARVIEAIDCLPTNMQKVLEVSLEMDGNYQETANTLGVPIGTVRSRLSRARVQLKQ+I
Sbjct  121  RQLARVIEAIDCLPTNMQKVLEVSLEMDGNYQETANTLGVPIGTVRSRLSRARVQLKQQI  180

Query  181  DPFA  184
            DPFA
Sbjct  181  DPFA  184

2) hrpL in NC_005773


> U03854|1|G1|437296|AAA17652.1|Pseudomonas_syringae_pv._syringae_Pss61|+|21..575|hrpL|-|putative 
alternate sigma factor
Length=184

 Score =  291 bits (1089),  Expect = 2e-80, Method: Compositional matrix adjust.
 Identities = 170/184 (93%), Positives = 179/184 (98%), Gaps = 0/184 (0%)

Query  1    MFPNLVILDAPQPRQDSSSAGIRQLTADQIQMLRAFIQKRVMNPDDVDDILQCVFLEALR  60
            M+PNLVILD  +PR+ SSSAGIRQLTADQIQMLRAFIQKRV N+DDVDDILQCVFLEALR
Sbjct  1    MLPNLVILDVTEPRKPSSSAGIRQLTADQIQMLRAFIQKRVKNADDVDDILQCVFLEALR  60

Query  61   NEHKFQHASKPQTWLCGIALNLIRNHFRKMYRQPYQESWEDDVHSELEWNGDITHQVDGH  120
            NEHKFQHASKPQTWLCGIALNLIRNHFRKMYRQPYQESWEDDVH++LEW+GDITHQVDGH
Sbjct  61   NEHKFQHASKPQTWLCGIALNLIRNHFRKMYRQPYQESWEDDVHTDLEWHGDITHQVDGH  120

Query  121  RQLARVIAAIDCLPSNMQKVLEVSLEMDGNYQDTANTLGVPIGTVRSRLSRARVQLKQQI  180
            RQLARVI AIDCLP+NMQKVLEVSLEMDGNYQ+TANTLGVPIGTVRSRLSRARVQLKQQI
Sbjct  121  RQLARVIEAIDCLPTNMQKVLEVSLEMDGNYQETANTLGVPIGTVRSRLSRARVQLKQQI  180

Query  181  DPFA  184
            DPFA
Sbjct  181  DPFA  184

3) hrpL in NC_004578


> U03854|1|G1|437296|AAA17652.1|Pseudomonas_syringae_pv._syringae_Pss61|+|21..575|hrpL|-|putative 
alternate sigma factor
Length=184

 Score =  286 bits (1071),  Expect = 5e-79, Method: Compositional matrix adjust.
 Identities = 164/184 (90%), Positives = 180/184 (98%), Gaps = 0/184 (0%)

Query  1    MFQKIVILDSTQPRQPSSSAGIRQMTADQIQMLRAFIQKRVMNPDDVDDILQCVFLEALR  60
            M+ ++VILD T+PR+PSSSAGIRQ+TADQIQMLRAFIQKRV N+DDVDDILQCVFLEALR
Sbjct  1    MLPNLVILDVTEPRKPSSSAGIRQLTADQIQMLRAFIQKRVKNADDVDDILQCVFLEALR  60

Query  61   NEHKFQHASKPQTWLCGIALNLIRNHFRKMYRQPYQESWEDEVHSELEGHGDVSHQVEGH  120
            NEHKFQHASKPQTWLCGIALNLIRNHFRKMYRQPYQESWED+VH++LE HGD++HQV+GH
Sbjct  61   NEHKFQHASKPQTWLCGIALNLIRNHFRKMYRQPYQESWEDDVHTDLEWHGDITHQVDGH  120

Query  121  RQLARVIQAIDCLPSNMQKVLEVSLEMDGNYQETANSLGVPIGTVRSRLSRARVQLKQQI  180
            RQLARVI+AIDCLP+NMQKVLEVSLEMDGNYQETAN+LGVPIGTVRSRLSRARVQLKQQI
Sbjct  121  RQLARVIEAIDCLPTNMQKVLEVSLEMDGNYQETANTLGVPIGTVRSRLSRARVQLKQQI  180

Query  181  DPFA  184
            DPFA
Sbjct  181  DPFA  184

4) H045_00150 in NC_020209


> U03854|1|G1|437296|AAA17652.1|Pseudomonas_syringae_pv._syringae_Pss61|+|21..575|hrpL|-|putative 
alternate sigma factor
Length=184

 Score =  133 bits (487),  Expect = 6e-33, Method: Compositional matrix adjust.
 Identities = 83/161 (52%), Positives = 117/161 (73%), Gaps = 12/161 (7%)

Query  21   QLTDDQQKKLRRFIHKRVLNPEDADDILQLTYLEAWRNRERFSGQASLSTWMCGIAQNLV  80
            QLT DQ + LR FI+KRV N++D DDILQ  +LEA RN ++F   +   TW+CGIA NL+
Sbjct  24   QLTADQIQMLRAFIQKRVKNADDVDDILQCVFLEALRNEHKFQHASKPQTWLCGIALNLI  83

Query  81   RNHFRRLYAKPVHCEFDESLWHGQEENKNLDWEFEI------NRRLEKTLSAIDHLPAEM  134
            RNHFR++Y +P    ++ES W  ++ + +L+W+ +I      +R+L + + AID LP++M
Sbjct  84   RNHFRKMYRQP----YQES-W-EDDVHTDLEWHGDITHQVDGHRQLARVIEAIDCLPTNM  137

Query  135  RKTLYASLETDGSYQDTANVLDIPIGTVRSRLSRAREQLKR  175
            +K L  SLE DG+YQ+TAN L++PIGTVRSRLSRAR QLK+
Sbjct  138  QKVLEVSLEMDGNYQETANTLGVPIGTVRSRLSRARVQLKQ  178

5) rspL in NC_012660


> U03854|1|G1|437296|AAA17652.1|Pseudomonas_syringae_pv._syringae_Pss61|+|21..575|hrpL|-|putative 
alternate sigma factor
Length=184

 Score =  132 bits (486),  Expect = 8e-33, Method: Compositional matrix adjust.
 Identities = 81/166 (49%), Positives = 120/166 (73%), Gaps = 12/166 (7%)

Query  19   MHHLTDDQQKKLRRFIHKRVLNPEDADDLLQLTYLEAWRNRERFSGNATLSTWMCGIAQN  78
            +++LT DQ + LR FI+KRV N++D DD+LQ  +LEA RN ++F   +   TW+CGIA N
Sbjct  22   IRQLTADQIQMLRAFIQKRVKNADDVDDILQCVFLEALRNEHKFQHASKPQTWLCGIALN  81

Query  79   LIRNHFRRLYAKPVHCEFDESLWHGQEDNHNLDWEFEI------NRRLEKTLSAIDHLPI  132
            LIRNHFR++Y +P    ++ES W  ++ + +L+W+ +I      +R+L + + AID LP 
Sbjct  82   LIRNHFRKMYRQP----YQES-W-EDDVHTDLEWHGDITHQVDGHRQLARVIEAIDCLPT  135

Query  133  EMRKTLYASLETDGSYQDTADALDIPIGTVRSRLSRAREQLKRATQ  178
            +M+K L  SLE DG+YQ+TA++L++PIGTVRSRLSRAR QLK+  +
Sbjct  136  NMQKVLEVSLEMDGNYQETANTLGVPIGTVRSRLSRARVQLKQQID  181

6) rspL in NC_017911


> U03854|1|G1|437296|AAA17652.1|Pseudomonas_syringae_pv._syringae_Pss61|+|21..575|hrpL|-|putative 
alternate sigma factor
Length=184

 Score =  130 bits (475),  Expect = 6e-32, Method: Compositional matrix adjust.
 Identities = 80/161 (50%), Positives = 116/161 (73%), Gaps = 12/161 (7%)

Query  21   HLTDDQQKKLRRFIHKRVLNPEDADDLLQLTYLEAWRNRERFSGTATLSTWMCGIAQNLI  80
            +LT DQ + LR FI+KRV N++D DD+LQ  +LEA RN ++F  ++   TW+CGIA NLI
Sbjct  24   QLTADQIQMLRAFIQKRVKNADDVDDILQCVFLEALRNEHKFQHASKPQTWLCGIALNLI  83

Query  81   RNHFRRLYAKPSHCEFDESLWHGHEENHSLDW------EFEVNRRLENTLSAIDHLPTEM  134
            RNHFR++Y +P    ++ES W++ + +  L+W      + + +R+L   + AID LPT+M
Sbjct  84   RNHFRKMYRQP----YQES-WED-DVHTDLEWHGDITHQVDGHRQLARVIEAIDCLPTNM  137

Query  135  RRTLYASLETDGSYQDTADVLDIPIGTVRSRLSRAREQLKR  175
            ++ L  SLE DG+YQ+TA+ L++PIGTVRSRLSRAR QLK+
Sbjct  138  QKVLEVSLEMDGNYQETANTLGVPIGTVRSRLSRARVQLKQ  178

7) PSEBR_a5390 in NC_015379


> U03854|1|G1|437296|AAA17652.1|Pseudomonas_syringae_pv._syringae_Pss61|+|21..575|hrpL|-|putative 
alternate sigma factor
Length=184

 Score =  123 bits (449),  Expect = 6e-30, Method: Compositional matrix adjust.
 Identities = 74/172 (44%), Positives = 122/172 (71%), Gaps = 2/172 (1%)

Query  21   MAPPQTSPAPTGAPGICFGEERKLRLFVQKRVLNQDDADDIIQLTYLEAWRNQQKFRGLA  80
            ++ P+ +++++G   +  ++ + LR F+QKRV N DD DDI+Q  +LEA RN++KF+  +
Sbjct  10   VTEPRKPSSSAGIRQLTADQIQMLRAFIQKRVKNADDVDDILQCVFLEALRNEHKFQHAS  69

Query  81   KQDTWLCGIALNLIRNHFRRFYAQPPLTTFDESEFHESSD-DIDLSELCDNRRLLDRTLL  139
            K +TWLCGIALNLIRNHFR+ Y QP   + ++ + H   + + D+++  D +R L R + 
Sbjct  70   KPQTWLCGIALNLIRNHFRKMYRQPYQESWED-DVHTDLEWHGDITHQVDGHRQLARVIE  128

Query  140  AMDALSKDMRDTLWTAVDTESSYRDAAERLGVPIGTVRSRLFRAREQLKRSV  191
            A+D L+ +M+  L  +++ +++Y+++A+ LGVPIGTVRSRL RAR QLK+ +
Sbjct  129  AIDCLPTNMQKVLEVSLEMDGNYQETANTLGVPIGTVRSRLSRARVQLKQQI  180

8) Marme_1067 in NC_015276


> U03854|1|G1|437296|AAA17652.1|Pseudomonas_syringae_pv._syringae_Pss61|+|21..575|hrpL|-|putative 
alternate sigma factor
Length=184

 Score =  117 bits (428),  Expect = 3e-28, Method: Compositional matrix adjust.
 Identities = 70/173 (41%), Positives = 117/173 (68%), Gaps = 2/173 (1%)

Query  4    LNSFEKNNQNNKIDIAHLHSNQNEKLRRFISKKIWHKEDAEEVLQFTYLEAIRCQHKFIG  63
            L+  E  + ++  +I +L ++Q + LR FI K++ + +D +++LQ  +LEA+R +HKF  
Sbjct  8    LDVTEPRKPSSSAGIRQLTADQIQMLRAFIQKRVKNADDVDDILQCVFLEALRNEHKFQH  67

Query  64   DSKPETWLFGIAANLTKNYFKRYYNAPELEEMTESLIMDLESEIEADPAMLVEHENLLTK  123
             SKP+TWL GIA NL +N F++ Y  P  E   + +  DLE   ++D +  V+ +  L++
Sbjct  68   ASKPQTWLCGIALNLIRNHFRKMYRQPYQESWEDDVHTDLEW--HGDITHQVDGHRQLAR  125

Query  124  TVDAMSQLPSDTQSILDMVIEKDFSYQEAADSIGVPIGTIRSRLSRARQLLKQ  176
             ++A+  LP++ Q +L++ +E D +YQE+A+++GVPIGT+RSRLSRAR  LKQ
Sbjct  126  VIEAIDCLPTNMQKVLEVSLEMDGNYQETANTLGVPIGTVRSRLSRARVQLKQ  178

9) hrpL in NC_016830


> U03854|1|G1|437296|AAA17652.1|Pseudomonas_syringae_pv._syringae_Pss61|+|21..575|hrpL|-|putative 
alternate sigma factor
Length=184

 Score =  117 bits (427),  Expect = 4e-28, Method: Compositional matrix adjust.
 Identities = 74/168 (45%), Positives = 118/168 (71%), Gaps = 0/168 (0%)

Query  10   PQTSQAPTGAPGICFGEERKLRLFVQKRVLNQDDADDIIQLTYLEAWRNQQKFKGLAKQD  69
            P+ + +++G   +  ++ + LR F+QKRV N DD DDI+Q  +LEA RN++KF+  +K +
Sbjct  13   PRKPSSSAGIRQLTADQIQMLRAFIQKRVKNADDVDDILQCVFLEALRNEHKFQHASKPQ  72

Query  70   TWLCGIALNLIRNHFRRFYAQPPlstfdesefsessddidlselCDNRRLLDRTLSAMDA  129
            TWLCGIALNLIRNHFR+ Y QP   + ++   ++   + D+++  D +R L R + A+D 
Sbjct  73   TWLCGIALNLIRNHFRKMYRQPYQESWEDDVHTDLEWHGDITHQVDGHRQLARVIEAIDC  132

Query  130  LPKDMRDTLWTAVDTESSYRDAAERLGVPIGTVRSRLFRAREQLKRSV  177
            LP +M+  L  +++ +++Y+++A+ LGVPIGTVRSRL RAR QLK+ +
Sbjct  133  LPTNMQKVLEVSLEMDGNYQETANTLGVPIGTVRSRLSRARVQLKQQI  180

10) H650_14875 in NC_021500


> U03854|1|G1|437296|AAA17652.1|Pseudomonas_syringae_pv._syringae_Pss61|+|21..575|hrpL|-|putative 
alternate sigma factor
Length=184

 Score =  110 bits (402),  Expect = 3e-26, Method: Compositional matrix adjust.
 Identities = 71/175 (41%), Positives = 114/175 (66%), Gaps = 6/175 (3%)

Query  6    INVNNESADKNAFDIDELVANTTTRLRKFISRRVYNQSDVDDLVQMTYLEAFRNQHKFIG  65
            ++V +     ++ +I +L A+    LR FI +RV N  DVDD++Q  +LEA+RN+HKF  
Sbjct  8    LDVTEPRKPSSSAGIRQLTADQIQMLRAFIQKRVKNADDVDDILQCVFLEALRNEHKFQH  67

Query  66   ASSKETWLFGIASNLVRNHFKKTFNKPEMVALDDVNFLISDQIFNPDY---INEHKIQLS  122
            AS  +TWL GIA NL+RNHF+K + +P   + +D   + +D   + D    ++ H+ QL+
Sbjct  68   ASKPQTWLCGIALNLIRNHFRKMYRQPYQESWEDD--VHTDLEWHGDITHQVDGHR-QLA  124

Query  123  ETIAMVDKLPLKMQNVIYHIMDSDTSYNDAAEQLGIPIGTIRSRLSRVRKILKNN  177
              I  +D LP +MQ+V+   ++ D +Y+++A+ LG+PIGT+RSRLSR R  LK++
Sbjct  125  RVIEAIDCLPTNMQKVLEVSLEMDGNYQETANTLGVPIGTVRSRLSRARVQLKQQ  179

11) hrpL in NC_004547


> U03854|1|G1|437296|AAA17652.1|Pseudomonas_syringae_pv._syringae_Pss61|+|21..575|hrpL|-|putative 
alternate sigma factor
Length=184

 Score =  109 bits (397),  Expect = 9e-26, Method: Compositional matrix adjust.
 Identities = 68/158 (44%), Positives = 111/158 (71%), Gaps = 8/158 (5%)

Query  28   QHGKKLHNFIRKRVSNHDDVEDLQQMTYLEVLKHQDKFAGASRPETWVFGIALNLVRNYF  87
            ++ + L+ FI+KRV N DDV+D+ Q  +LE L++++KF  AS+P+TW+ GIALNL+RN F
Sbjct  28   DQIQMLRAFIQKRVKNADDVDDILQCVFLEALRNEHKFQHASKPQTWLCGIALNLIRNHF  87

Query  88   KQA-RQRAQEMGDEMLEHIAIELD-PGAIT---ESQRALKRAMDAIVSLPEDTRQMLMQL  142
            ++  RQ  QE  +   +++  +L+  G IT   +++R L R ++AI  LP + +++L   
Sbjct  88   RKMYRQPYQESWE---DDVHTDLEWHGDITHQVDGHRQLARVIEAIDCLPTNMQKVLEVS  144

Query  143  LDTDASYQDLALQLGIPIGTVRSRLSRARGVIRQAVES  180
            L+ D++YQ+ A  LG+PIGTVRSRLSRAR  ++Q +++
Sbjct  145  LEMDGNYQETANTLGVPIGTVRSRLSRARVQLKQQIDP  182

12) PCC21_022820 in NC_018525


> U03854|1|G1|437296|AAA17652.1|Pseudomonas_syringae_pv._syringae_Pss61|+|21..575|hrpL|-|putative 
alternate sigma factor
Length=184

 Score =  107 bits (389),  Expect = 4e-25, Method: Compositional matrix adjust.
 Identities = 67/158 (43%), Positives = 110/158 (70%), Gaps = 8/158 (5%)

Query  29   QHGKKLHNFIRKRVSNHDDVEDLQQMTYLEVLKHQDKFAGASRPETWVFGIALNLVRNYF  88
            ++ + L+ FI+KRV N DDV+D+ Q  +LE L++++KF  AS+P+TW+ GIALNL+RN F
Sbjct  28   DQIQMLRAFIQKRVKNADDVDDILQCVFLEALRNEHKFQHASKPQTWLCGIALNLIRNHF  87

Query  89   KQA-RQRAQEMGDEMLEHIAIELD-PGAIT---ESQRSLKRAMDAIVSLPEDTRQMLMQL  143
            ++  RQ  QE  +   +++  +L+  G IT   +++R L R ++AI  LP + +++L   
Sbjct  88   RKMYRQPYQESWE---DDVHTDLEWHGDITHQVDGHRQLARVIEAIDCLPTNMQKVLEVS  144

Query  144  LDTDASYQDLALQLEIPIGTVRSRLSRARGVIRQAVES  181
            L+ D++YQ+ A  L +PIGTVRSRLSRAR  ++Q +++
Sbjct  145  LEMDGNYQETANTLGVPIGTVRSRLSRARVQLKQQIDP  182

13) PC1_2204 in NC_012917


> U03854|1|G1|437296|AAA17652.1|Pseudomonas_syringae_pv._syringae_Pss61|+|21..575|hrpL|-|putative 
alternate sigma factor
Length=184

 Score =  106 bits (387),  Expect = 5e-25, Method: Compositional matrix adjust.
 Identities = 67/158 (43%), Positives = 110/158 (70%), Gaps = 8/158 (5%)

Query  29   QHGKKLHNFIRKRVSNHDDVEDLQQMTYLEVLKHQDKFAGASRPETWVFGIALNLVRNYF  88
            ++ + L+ FI+KRV N DDV+D+ Q  +LE L++++KF  AS+P+TW+ GIALNL+RN F
Sbjct  28   DQIQMLRAFIQKRVKNADDVDDILQCVFLEALRNEHKFQHASKPQTWLCGIALNLIRNHF  87

Query  89   KQA-RQRAQEMGDEMLEHIAIDLD-PGAIA---ESQRALKRAMDAIVSLPEDTRQMLMQL  143
            ++  RQ  QE  +   +++  DL+  G I+   +++R L R ++AI  LP + +++L   
Sbjct  88   RKMYRQPYQESWE---DDVHTDLEWHGDITHQVDGHRQLARVIEAIDCLPTNMQKVLEVS  144

Query  144  LDTDASYQDLALQLEIPIGTVRSRLSRARGVIRQAVES  181
            L+ D++YQ+ A  L +PIGTVRSRLSRAR  ++Q +++
Sbjct  145  LEMDGNYQETANTLGVPIGTVRSRLSRARVQLKQQIDP  182

14) D781_3946 in NC_020064


> U03854|1|G1|437296|AAA17652.1|Pseudomonas_syringae_pv._syringae_Pss61|+|21..575|hrpL|-|putative 
alternate sigma factor
Length=184

 Score =  106 bits (386),  Expect = 7e-25, Method: Compositional matrix adjust.
 Identities = 66/151 (44%), Positives = 105/151 (70%), Gaps = 2/151 (1%)

Query  30   KKLINFIRRRVASTEDVEDIAQMTCLEVLRNRHKFTGASLPETWMFGIAINLIRNHYKRQ  89
            + L  FI++RV +++DV+DI Q   LE LRN HKF  AS P+TW+ GIA+NLIRNH+++ 
Sbjct  31   QMLRAFIQKRVKNADDVDDILQCVFLEALRNEHKFQHASKPQTWLCGIALNLIRNHFRKM  90

Query  90   -QHRYLFDTLNDEVLENLLHDDDPSALTEHQRLLTTALTSIDRLPEEIKHMLTILIGDDG  148
             ++ Y  ++ +D+V  +L  ++D +   + +R L+  + +ID LP +++ +L + +  DG
Sbjct  91   YRQPYQ-ESWEDDVHTDLEWHGDITHQVDGHRQLARVIEAIDCLPTNMQKVLEVSLEMDG  149

Query  149  SYQDIAQQLNIPIGTVRSRLSRARETLKSQV  179
            +YQ+ A+ L +PIGTVRSRLSRAR  LK Q+
Sbjct  150  NYQETANTLGVPIGTVRSRLSRARVQLKQQI  180

15) hrpL in NC_017445


> U03854|1|G1|437296|AAA17652.1|Pseudomonas_syringae_pv._syringae_Pss61|+|21..575|hrpL|-|putative 
alternate sigma factor
Length=184

 Score =  103 bits (372),  Expect = 8e-24, Method: Compositional matrix adjust.
 Identities = 65/153 (43%), Positives = 103/153 (68%), Gaps = 2/153 (1%)

Query  30   EHGRRVHHFIRKRVSHREDAEDLEQMTWLEVLRNRDKFAGASRPETWVFGIALNLVRNHF  89
            ++ + ++ FI+KRV + +D +D+ Q   LE LRN +KF  AS+P+TW+ GIALNL+RNHF
Sbjct  28   DQIQMLRAFIQKRVKNADDVDDILQCVFLEALRNEHKFQHASKPQTWLCGIALNLIRNHF  87

Query  90   RLQSGRPRCDELDDDIILTQG--DDPSHITEYQRLLNSTLNSIAVLPEDARRLMNMLVEK  147
            R    +P  +  +DD+       +D +H  + +R L   +++I  LP + ++++++ +E 
Sbjct  88   RKMYRQPYQESWEDDVHTDLEWHGDITHQVDGHRQLARVIEAIDCLPTNMQKVLEVSLEM  147

Query  148  DGSYQDIAAHLNIPIGTVRSRLSRARVTLKQSV  180
            DG+YQ+ A  L +PIGTVRSRLSRARV LKQ +
Sbjct  148  DGNYQETANTLGVPIGTVRSRLSRARVQLKQQI  180

16) hrpL in NC_017390


> U03854|1|G1|437296|AAA17652.1|Pseudomonas_syringae_pv._syringae_Pss61|+|21..575|hrpL|-|putative 
alternate sigma factor
Length=184

 Score =  103 bits (372),  Expect = 8e-24, Method: Compositional matrix adjust.
 Identities = 65/153 (43%), Positives = 103/153 (68%), Gaps = 2/153 (1%)

Query  30   EHGRRVHHFIRKRVSHREDAEDLEQMTWLEVLRNRDKFAGASRPETWVFGIALNLVRNHF  89
            ++ + ++ FI+KRV + +D +D+ Q   LE LRN +KF  AS+P+TW+ GIALNL+RNHF
Sbjct  28   DQIQMLRAFIQKRVKNADDVDDILQCVFLEALRNEHKFQHASKPQTWLCGIALNLIRNHF  87

Query  90   RLQSGRPRCDELDDDIILTQG--DDPSHITEYQRLLNSTLNSIAVLPEDARRLMNMLVEK  147
            R    +P  +  +DD+       +D +H  + +R L   +++I  LP + ++++++ +E 
Sbjct  88   RKMYRQPYQESWEDDVHTDLEWHGDITHQVDGHRQLARVIEAIDCLPTNMQKVLEVSLEM  147

Query  148  DGSYQDIAAHLNIPIGTVRSRLSRARVTLKQSV  180
            DG+YQ+ A  L +PIGTVRSRLSRARV LKQ +
Sbjct  148  DGNYQETANTLGVPIGTVRSRLSRARVQLKQQI  180

17) hrpL in NC_012214


> U03854|1|G1|437296|AAA17652.1|Pseudomonas_syringae_pv._syringae_Pss61|+|21..575|hrpL|-|putative 
alternate sigma factor
Length=184

 Score =  103 bits (372),  Expect = 8e-24, Method: Compositional matrix adjust.
 Identities = 65/153 (43%), Positives = 103/153 (68%), Gaps = 2/153 (1%)

Query  30   EHGRRVHHFIRKRVSHREDAEDLEQMTWLEVLRNRDKFAGASRPETWVFGIALNLVRNHF  89
            ++ + ++ FI+KRV + +D +D+ Q   LE LRN +KF  AS+P+TW+ GIALNL+RNHF
Sbjct  28   DQIQMLRAFIQKRVKNADDVDDILQCVFLEALRNEHKFQHASKPQTWLCGIALNLIRNHF  87

Query  90   RLQSGRPRCDELDDDIILTQG--DDPSHITEYQRLLNSTLNSIAVLPEDARRLMNMLVEK  147
            R    +P  +  +DD+       +D +H  + +R L   +++I  LP + ++++++ +E 
Sbjct  88   RKMYRQPYQESWEDDVHTDLEWHGDITHQVDGHRQLARVIEAIDCLPTNMQKVLEVSLEM  147

Query  148  DGSYQDIAAHLNIPIGTVRSRLSRARVTLKQSV  180
            DG+YQ+ A  L +PIGTVRSRLSRARV LKQ +
Sbjct  148  DGNYQETANTLGVPIGTVRSRLSRARVQLKQQI  180

18) hrpL in NC_014500


> U03854|1|G1|437296|AAA17652.1|Pseudomonas_syringae_pv._syringae_Pss61|+|21..575|hrpL|-|putative 
alternate sigma factor
Length=184

 Score =  102 bits (371),  Expect = 1e-23, Method: Compositional matrix adjust.
 Identities = 66/153 (44%), Positives = 103/153 (68%), Gaps = 5/153 (3%)

Query  34   LQNFIRKRVSNREDVEDLQQMTYLEVLKNREKFAGASRPETWVFGIALNLVRNHFKQARY  93
            L+ FI+KRV N +DV+D+ Q  +LE L+N +KF  AS+P+TW+ GIALNL+RNHF++  Y
Sbjct  33   LRAFIQKRVKNADDVDDILQCVFLEALRNEHKFQHASKPQTWLCGIALNLIRNHFRKM-Y  91

Query  94   RAV--DISDDALEVAEILSTDIDPSRITECDHSLNRALAASAHLPEETRKMLMMLLDADV  151
            R    +  +D ++    L  + D ++  + ++ L R + A   LP + +K+L + L+ D 
Sbjct  92   RQPYQESWEDDVHTD--LEWHGDITHQVDGHRQLARVIEAIDCLPTNMQKVLEVSLEMDG  149

Query  152  SYQDIAEQLNIPIGTVRSRLSRARGYLRQAVDA  184
            +YQ+ A+ L +PIGTVRSRLSRAR  L+Q +D+
Sbjct  150  NYQETANTLGVPIGTVRSRLSRARVQLKQQIDP  182

19) hrpL in NC_013971


> U03854|1|G1|437296|AAA17652.1|Pseudomonas_syringae_pv._syringae_Pss61|+|21..575|hrpL|-|putative 
alternate sigma factor
Length=184

 Score =  102 bits (371),  Expect = 1e-23, Method: Compositional matrix adjust.
 Identities = 67/153 (44%), Positives = 102/153 (67%), Gaps = 2/153 (1%)

Query  30   EHGRRVHHFIRKRVSHREDAEDLEQMTWLEVLRNRDKFAGASRPETWVFGIALNLVRNHF  89
            ++ + ++ FI+KRV + +D +D+ Q   LE LRN +KF  AS+P+TW+ GIALNL+RNHF
Sbjct  28   DQIQMLRAFIQKRVKNADDVDDILQCVFLEALRNEHKFQHASKPQTWLCGIALNLIRNHF  87

Query  90   RLQSGRPRCDELEDDIILTQG--DDPSHITEYQRLLNSTLNSIANLPEDTRRLLNMLVEK  147
            R    +P  +  EDD+       +D +H  + +R L   +++I  LP + +++L++ +E 
Sbjct  88   RKMYRQPYQESWEDDVHTDLEWHGDITHQVDGHRQLARVIEAIDCLPTNMQKVLEVSLEM  147

Query  148  DGSYQAIAAHLNIPIGTVRSRLSRARVTLKQSV  180
            DG+YQ  A  L +PIGTVRSRLSRARV LKQ +
Sbjct  148  DGNYQETANTLGVPIGTVRSRLSRARVQLKQQI  180

20) hrpL in NC_013961


> U03854|1|G1|437296|AAA17652.1|Pseudomonas_syringae_pv._syringae_Pss61|+|21..575|hrpL|-|putative 
alternate sigma factor
Length=184

 Score =  102 bits (371),  Expect = 1e-23, Method: Compositional matrix adjust.
 Identities = 67/153 (44%), Positives = 102/153 (67%), Gaps = 2/153 (1%)

Query  30   EHGRRVHHFIRKRVSHREDAEDLEQMTWLEVLRNRDKFAGASRPETWVFGIALNLVRNHF  89
            ++ + ++ FI+KRV + +D +D+ Q   LE LRN +KF  AS+P+TW+ GIALNL+RNHF
Sbjct  28   DQIQMLRAFIQKRVKNADDVDDILQCVFLEALRNEHKFQHASKPQTWLCGIALNLIRNHF  87

Query  90   RLQSGRPRCDELEDDIILTQG--DDPSHITEYQRLLNSTLNSIANLPEDTRRLLNMLVEK  147
            R    +P  +  EDD+       +D +H  + +R L   +++I  LP + +++L++ +E 
Sbjct  88   RKMYRQPYQESWEDDVHTDLEWHGDITHQVDGHRQLARVIEAIDCLPTNMQKVLEVSLEM  147

Query  148  DGSYQAIAAHLNIPIGTVRSRLSRARVTLKQSV  180
            DG+YQ  A  L +PIGTVRSRLSRARV LKQ +
Sbjct  148  DGNYQETANTLGVPIGTVRSRLSRARVQLKQQI  180

21) Dd586_1890 in NC_013592


> U03854|1|G1|437296|AAA17652.1|Pseudomonas_syringae_pv._syringae_Pss61|+|21..575|hrpL|-|putative 
alternate sigma factor
Length=184

 Score =  100 bits (364),  Expect = 4e-23, Method: Compositional matrix adjust.
 Identities = 65/153 (43%), Positives = 102/153 (67%), Gaps = 5/153 (3%)

Query  34   LQNFIRKRVSNREDVEDLQQMTYLEVLKNREKFAGASRPETWVFGIALNLVRNHFKQARY  93
            L+ FI+KRV N +DV+D+ Q  +LE L+N +KF  AS+P+TW+ GIALNL+RNHF++  Y
Sbjct  33   LRAFIQKRVKNADDVDDILQCVFLEALRNEHKFQHASKPQTWLCGIALNLIRNHFRKM-Y  91

Query  94   RTV--DISDEVLEVVEVMSTDIDPSRITECDHALDRALAASAHLPEDTRKMLVMLLDADI  151
            R    +  ++  +V   +  + D ++  + ++ L R + A   LP + +K+L + L+ D 
Sbjct  92   RQPYQESWED--DVHTDLEWHGDITHQVDGHRQLARVIEAIDCLPTNMQKVLEVSLEMDG  149

Query  152  SYQDIATQLNIPIGTVRSRLSRARGYLRQAVDA  184
            +YQ+ A  L +PIGTVRSRLSRAR  L+Q +D+
Sbjct  150  NYQETANTLGVPIGTVRSRLSRARVQLKQQIDP  182

22) Ser39006_2911 in NC_022268


> U03854|1|G1|437296|AAA17652.1|Pseudomonas_syringae_pv._syringae_Pss61|+|21..575|hrpL|-|putative 
alternate sigma factor
Length=184

 Score = 99.6 bits (359),  Expect = 9e-23, Method: Compositional matrix adjust.
 Identities = 65/150 (44%), Positives = 103/150 (69%), Gaps = 2/150 (1%)

Query  34   LHNFIRKRVSNREDVEDLQQMTYLEVLKNSEKFAGASRPETWVFGIALNLVRNHFKQARI  93
            L+ FI+KRV N +DV+D+ Q  +LE L+N +KF  AS+P+TW+ GIALNL+RNHF++   
Sbjct  33   LRAFIQKRVKNADDVDDILQCVFLEALRNEHKFQHASKPQTWLCGIALNLIRNHFRKMYR  92

Query  94   RANEVG--DEILEFLSNDIDPSRIVECDYSLVRAVAATAQLPEETRKMLLMLIDSDVSYQ  151
            ++ + +  D++   L  + D ++ V+ +  L R + A   LP + +K+L + ++ D +YQ
Sbjct  93   QPYQESWEDDVHTDLEWHGDITHQVDGHRQLARVIEAIDCLPTNMQKVLEVSLEMDGNYQ  152

Query  152  DIANMLNIPIGTVRSRLSRARHFLRQAVDA  181
            + AN L +PIGTVRSRLSRAR  L+Q +D+
Sbjct  153  ETANTLGVPIGTVRSRLSRARVQLKQQIDP  182

23) Dd1591_1893 in NC_012912


> U03854|1|G1|437296|AAA17652.1|Pseudomonas_syringae_pv._syringae_Pss61|+|21..575|hrpL|-|putative 
alternate sigma factor
Length=184

 Score = 92.3 bits (331),  Expect = 2e-20, Method: Compositional matrix adjust.
 Identities = 68/152 (45%), Positives = 106/152 (70%), Gaps = 3/152 (1%)

Query  34   LQNFIRKRVSNREDVEDLQQMTYLEVLKNREKFAGASRPETWVFGIALNLVRNHFKQARY  93
            L+ FI+KRV N +DV+D+ Q  +LE L+N +KF  AS+P+TW+ GIALNL+RNHF++  Y
Sbjct  33   LRAFIQKRVKNADDVDDILQCVFLEALRNEHKFQHASKPQTWLCGIALNLIRNHFRKM-Y  91

Query  94   R-AFDISDEALEVAEILSTDIDPSRITECDhslsralaasahlPEETRKMLMMLLDADVS  152
            R +++ S E  +V   L  + D ++  + ++ L+R + A   LP + +K+L + L+ D +
Sbjct  92   RQPYQESWED-DVHTDLEWHGDITHQVDGHRQLARVIEAIDCLPTNMQKVLEVSLEMDGN  150

Query  153  YQDIAEQLNIPIGTVRSRLSRARGYLRQAVDA  184
            YQ+ A+ L +PIGTVRSRLSRAR  L+Q +D+
Sbjct  151  YQETANTLGVPIGTVRSRLSRARVQLKQQIDP  182