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Homologs of tnpB gene of NC_017368_P1

protein-level

Hit (GenBank Accn)

Product

Source Genome

Eval.

Ident.(%)

1) tnpB
( YP_005779045.1 )

IS606 transposase

NC_017368
(Helicobacter pylori F16)

4e-37

100

2) HPOK113_0566
( YP_007536680.1 )

IS606 transposase

NC_020508
(Helicobacter pylori OK113)

1e-33

3) tnpB
( YP_005770140.1 )

transposase

NC_017360
(Helicobacter pylori 35A)

2e-33

4) tnpB
( YP_005777289.1 )

IS606 transposase

NC_017367
(Helicobacter pylori F57)

1e-32

5) K747_06815
( YP_007979550.1 )

transposase

NC_021215
(Helicobacter pylori UM032)

5e-32

6) K748_08055
( YP_008337465.1 )

transposase

NC_021882
(Helicobacter pylori UM298)

5e-32

7) K749_01450
( YP_007980087.1 )

transposase

NC_021216
(Helicobacter pylori UM299)

5e-32

8) MWE_0972
( YP_006338464.1 )

IS606 transposase

NC_017926
(Helicobacter pylori XZ274)

2e-30

9) HPCU_05140
( YP_005767089.1 )

IS606 transposase

NC_017358
(Helicobacter pylori Cuz20)

3e-29

10) HPSH169_05000
( YP_006226168.1 )

IS606 transposase

NC_017740
(Helicobacter pylori Shi169)

3e-29

11) tnpB3
( YP_005785435.1 )

transposase

NC_017375
(Helicobacter pylori 83)

5e-29

12) HPSH417_04770
( YP_006224583.1 )

IS606 transposase

NC_017739
(Helicobacter pylori Shi417)

2e-28

13) tnpB
( YP_005774523.1 )

IS606 transposase

NC_017365
(Helicobacter pylori F30)

8e-27

14) Pnap_3404
( YP_983622.1 )

transposase, IS605 OrfB

NC_008781
(Polaromonas naphthalenivorans CJ2)

7e-09

15) Bcoa_1003
( YP_004859001.1 )

transposase IS605 OrfB

NC_016023
(Bacillus coagulans 36D1)

8e-08

16) R0052_01045
( YP_006655039.1 )

transposase

NC_018528
(Lactobacillus helveticus R0052)

1e-07

17) MCON_3227
( YP_004385327.1 )

transposase IS605 family

NC_015416
(Methanosaeta concilii GP6)

1e-06

• Sequence Alignments

1) tnpB in NC_017368


> NC_017368_P1|1|G1|385217569|YP_005779045.1|Helicobacter_pylori_F16|+|1..270|tnpB|HPF16_0810|IS606 
transposase
Length=89

 Score =  147 bits (543),  Expect = 4e-37, Method: Compositional matrix adjust.
 Identities = 89/89 (100%), Positives = 89/89 (100%), Gaps = 0/89 (0%)

Query  1   MEKNYLSTSLLDYKQQHNGKLLMKVPPQYTSKTCSHCGSINPKLKLNHRQYLCSDCGYKE  60
           MEKNYLSTSLLDYKQQHNGKLLMKVPPQYTSKTCSHCGSINPKLKLNHRQYLCSDCGYKE
Sbjct  1   MEKNYLSTSLLDYKQQHNGKLLMKVPPQYTSKTCSHCGSINPKLKLNHRQYLCSDCGYKE  60

Query  61  HRDINAANNILNKGLSLFRVGNIHTDFKG  89
           HRDINAANNILNKGLSLFRVGNIHTDFKG
Sbjct  61  HRDINAANNILNKGLSLFRVGNIHTDFKG  89

2) HPOK113_0566 in NC_020508


> NC_017368_P1|1|G1|385217569|YP_005779045.1|Helicobacter_pylori_F16|+|1..270|tnpB|HPF16_0810|IS606 
transposase
Length=89

 Score =  136 bits (499),  Expect = 1e-33, Method: Compositional matrix adjust.
 Identities = 80/89 (90%), Positives = 86/89 (97%), Gaps = 0/89 (0%)

Query  1   MEKNYLSTSLLNYKQQHNGKLLVRVPPQYTSKTCYHCGSINHKLKLNHRQYLCPDCGHKE  60
           MEKNYLSTSLL+YKQQHNGKLL++VPPQYTSKTC HCGSIN KLKLNHRQYLC+DCG KE
Sbjct  1   MEKNYLSTSLLDYKQQHNGKLLMKVPPQYTSKTCSHCGSINPKLKLNHRQYLCSDCGYKE  60

Query  61  HRDINAANNILSKGLSLFRVGNIHADFKG  89
           HRDINAANNIL+KGLSLFRVGNIH+DFKG
Sbjct  61  HRDINAANNILNKGLSLFRVGNIHTDFKG  89

3) tnpB in NC_017360


> NC_017368_P1|1|G1|385217569|YP_005779045.1|Helicobacter_pylori_F16|+|1..270|tnpB|HPF16_0810|IS606 
transposase
Length=89

 Score =  135 bits (497),  Expect = 2e-33, Method: Compositional matrix adjust.
 Identities = 79/89 (89%), Positives = 85/89 (96%), Gaps = 0/89 (0%)

Query  1   MEKNYLSTSLLDYKQQHNGKLLVKVPPQYTSKTCCNCGSINPKLKLNHKQYLCPDCGYKE  60
           MEKNYLSTSLLDYKQQHNGKLL+KVPPQYTSKTC +CGSINPKLKLNH+QYLC+DCGYKE
Sbjct  1   MEKNYLSTSLLDYKQQHNGKLLMKVPPQYTSKTCSHCGSINPKLKLNHRQYLCSDCGYKE  60

Query  61  HRDINAANNILNKGLSLFRAGNVLADFKE  89
           HRDINAANNILNKGLSLFR GN+ +DFK 
Sbjct  61  HRDINAANNILNKGLSLFRVGNIHTDFKG  89

4) tnpB in NC_017367


> NC_017368_P1|1|G1|385217569|YP_005779045.1|Helicobacter_pylori_F16|+|1..270|tnpB|HPF16_0810|IS606 
transposase
Length=89

 Score =  133 bits (487),  Expect = 1e-32, Method: Compositional matrix adjust.
 Identities = 82/89 (93%), Positives = 84/89 (95%), Gaps = 0/89 (0%)

Query  1   MEKNYLSTSLLDYKQQHNGKLLVKVLPQYTSKTCYHCGSINPKLKLNHRQYLCSDCGYKE  60
           MEKNYLSTSLLDYKQQHNGKLL+KV PQYTSKTC HCGSINPKLKLNHRQYLCSDCGYKE
Sbjct  1   MEKNYLSTSLLDYKQQHNGKLLMKVPPQYTSKTCSHCGSINPKLKLNHRQYLCSDCGYKE  60

Query  61  HRDINAANNILNKGLSLFRAGNIHADSKE  89
           HRDINAANNILNKGLSLFR GNIH+D K 
Sbjct  61  HRDINAANNILNKGLSLFRVGNIHTDFKG  89

5) K747_06815 in NC_021215


> NC_017368_P1|1|G1|385217569|YP_005779045.1|Helicobacter_pylori_F16|+|1..270|tnpB|HPF16_0810|IS606 
transposase
Length=89

 Score =  130 bits (478),  Expect = 5e-32, Method: Compositional matrix adjust.
 Identities = 78/89 (88%), Positives = 83/89 (94%), Gaps = 0/89 (0%)

Query  1   MEKNYLSTSLLDYKQQHNGKLLVKVPPQYTSKTCYHCGSINPKLKLNHRQYLCPDCGYKE  60
           MEKNYLSTSLLDYKQQHNGKLL+KVPPQYTSKTC HCGSINPKLKLNHRQYLC+DCGYKE
Sbjct  1   MEKNYLSTSLLDYKQQHNGKLLMKVPPQYTSKTCSHCGSINPKLKLNHRQYLCSDCGYKE  60

Query  61  HRNINAANNILSKGLSLFRAGNALADSKE  89
           HR+INAANNIL+KGLSLFR GN  +D K 
Sbjct  61  HRDINAANNILNKGLSLFRVGNIHTDFKG  89

6) K748_08055 in NC_021882


> NC_017368_P1|1|G1|385217569|YP_005779045.1|Helicobacter_pylori_F16|+|1..270|tnpB|HPF16_0810|IS606 
transposase
Length=89

 Score =  130 bits (478),  Expect = 5e-32, Method: Compositional matrix adjust.
 Identities = 78/89 (88%), Positives = 83/89 (94%), Gaps = 0/89 (0%)

Query  1   MEKNYLSTSLLDYKQQHNGKLLVKVPPQYTSKTCYHCGSINPKLKLNHRQYLCPDCGYKE  60
           MEKNYLSTSLLDYKQQHNGKLL+KVPPQYTSKTC HCGSINPKLKLNHRQYLC+DCGYKE
Sbjct  1   MEKNYLSTSLLDYKQQHNGKLLMKVPPQYTSKTCSHCGSINPKLKLNHRQYLCSDCGYKE  60

Query  61  HRNINAANNILSKGLSLFRAGNALADSKE  89
           HR+INAANNIL+KGLSLFR GN  +D K 
Sbjct  61  HRDINAANNILNKGLSLFRVGNIHTDFKG  89

7) K749_01450 in NC_021216


> NC_017368_P1|1|G1|385217569|YP_005779045.1|Helicobacter_pylori_F16|+|1..270|tnpB|HPF16_0810|IS606 
transposase
Length=89

 Score =  130 bits (478),  Expect = 5e-32, Method: Compositional matrix adjust.
 Identities = 78/89 (88%), Positives = 83/89 (94%), Gaps = 0/89 (0%)

Query  1   MEKNYLSTSLLDYKQQHNGKLLVKVPPQYTSKTCYHCGSINPKLKLNHRQYLCPDCGYKE  60
           MEKNYLSTSLLDYKQQHNGKLL+KVPPQYTSKTC HCGSINPKLKLNHRQYLC+DCGYKE
Sbjct  1   MEKNYLSTSLLDYKQQHNGKLLMKVPPQYTSKTCSHCGSINPKLKLNHRQYLCSDCGYKE  60

Query  61  HRNINAANNILSKGLSLFRAGNALADSKE  89
           HR+INAANNIL+KGLSLFR GN  +D K 
Sbjct  61  HRDINAANNILNKGLSLFRVGNIHTDFKG  89

8) MWE_0972 in NC_017926


> NC_017368_P1|1|G1|385217569|YP_005779045.1|Helicobacter_pylori_F16|+|1..270|tnpB|HPF16_0810|IS606 
transposase
Length=89

 Score =  125 bits (459),  Expect = 2e-30, Method: Compositional matrix adjust.
 Identities = 73/80 (92%), Positives = 78/80 (98%), Gaps = 0/80 (0%)

Query  1   MLDYKQQHNGKLLVKVPPQYTSKTCSHCGSINPKLKLNHRQYLCPDCGYKEHRDINAANN  60
           +LDYKQQHNGKLL+KVPPQYTSKTCSHCGSINPKLKLNHRQYLC+DCGYKEHRDINAANN
Sbjct  10  LLDYKQQHNGKLLMKVPPQYTSKTCSHCGSINPKLKLNHRQYLCSDCGYKEHRDINAANN  69

Query  61  ILNKGLSFFRVGNILADFKE  80
           ILNKGLS+FRVGNI +DFK 
Sbjct  70  ILNKGLSLFRVGNIHTDFKG  89

9) HPCU_05140 in NC_017358


> NC_017368_P1|1|G1|385217569|YP_005779045.1|Helicobacter_pylori_F16|+|1..270|tnpB|HPF16_0810|IS606 
transposase
Length=89

 Score =  121 bits (443),  Expect = 3e-29, Method: Compositional matrix adjust.
 Identities = 69/85 (82%), Positives = 77/85 (91%), Gaps = 0/85 (0%)

Query  26   YQIIFFLDYKQQHNGKLLVKVPPQYTSKTCCNCGSINPKLKLNHRQYLCPDCGYQEHRDI  85
            Y    +LDYKQQHNGKLL+KVPPQYTSKTC +CGSINPKLKLNHRQYLC+DCGY+EHRDI
Sbjct  5    YLSTSLLDYKQQHNGKLLMKVPPQYTSKTCSHCGSINPKLKLNHRQYLCSDCGYKEHRDI  64

Query  86   NAANNILNKGLSLFGAGNVHADYKE  110
            NAANNILNKGLSLF  GN+H+D+K 
Sbjct  65   NAANNILNKGLSLFRVGNIHTDFKG  89

10) HPSH169_05000 in NC_017740


> NC_017368_P1|1|G1|385217569|YP_005779045.1|Helicobacter_pylori_F16|+|1..270|tnpB|HPF16_0810|IS606 
transposase
Length=89

 Score =  121 bits (443),  Expect = 3e-29, Method: Compositional matrix adjust.
 Identities = 69/85 (82%), Positives = 77/85 (91%), Gaps = 0/85 (0%)

Query  26   YQIIFFLDYKQQHNGKLLVKVPPQYTSKTCCNCGSINPKLKLNHRQYLCPDCGYQEHRDI  85
            Y    +LDYKQQHNGKLL+KVPPQYTSKTC +CGSINPKLKLNHRQYLC+DCGY+EHRDI
Sbjct  5    YLSTSLLDYKQQHNGKLLMKVPPQYTSKTCSHCGSINPKLKLNHRQYLCSDCGYKEHRDI  64

Query  86   NAANNILNKGLSLFGAGNVHADYKE  110
            NAANNILNKGLSLF  GN+H+D+K 
Sbjct  65   NAANNILNKGLSLFRVGNIHTDFKG  89

11) tnpB3 in NC_017375


> NC_017368_P1|1|G1|385217569|YP_005779045.1|Helicobacter_pylori_F16|+|1..270|tnpB|HPF16_0810|IS606 
transposase
Length=89

 Score =  120 bits (440),  Expect = 5e-29, Method: Compositional matrix adjust.
 Identities = 68/81 (84%), Positives = 76/81 (94%), Gaps = 0/81 (0%)

Query  3   DLLDYKQQHNGKLLVKVPPQYTSKTCCNCGSINPKLKLNHKQYLCPDCGYKEHRDINATN  62
            LLDYKQQHNGKLL+KVPPQYTSKTC +CGSINPKLKLNH+QYLC+DCGYKEHRDINA+N
Sbjct  9   SLLDYKQQHNGKLLMKVPPQYTSKTCSHCGSINPKLKLNHRQYLCSDCGYKEHRDINAAN  68

Query  63  NILSKGLSLFGVGNVLADFKE  83
           NIL+KGLSLF VGN+ +DFK 
Sbjct  69  NILNKGLSLFRVGNIHTDFKG  89

12) HPSH417_04770 in NC_017739


> NC_017368_P1|1|G1|385217569|YP_005779045.1|Helicobacter_pylori_F16|+|1..270|tnpB|HPF16_0810|IS606 
transposase
Length=89

 Score =  119 bits (433),  Expect = 2e-28, Method: Compositional matrix adjust.
 Identities = 68/85 (80%), Positives = 76/85 (90%), Gaps = 0/85 (0%)

Query  26   YQIIFFLDYKQQHNGKLLVKVPPQYTSKTCCNCGSINPKLKLNHRQYLCPDCGYQEHRDI  85
            Y    +LDYKQQHNGKLL+KVPPQYTSKTC +CGSINPKLKLNHRQYLC+DCGY+EHRDI
Sbjct  5    YLSTSLLDYKQQHNGKLLMKVPPQYTSKTCSHCGSINPKLKLNHRQYLCSDCGYKEHRDI  64

Query  86   NAANNILNKGLSLFGAGNVYADYKE  110
            NAANNILNKGLSLF  GN+ +D+K 
Sbjct  65   NAANNILNKGLSLFRVGNIHTDFKG  89

13) tnpB in NC_017365


> NC_017368_P1|1|G1|385217569|YP_005779045.1|Helicobacter_pylori_F16|+|1..270|tnpB|HPF16_0810|IS606 
transposase
Length=89

 Score =  113 bits (412),  Expect = 8e-27, Method: Compositional matrix adjust.
 Identities = 66/73 (91%), Positives = 71/73 (98%), Gaps = 0/73 (0%)

Query  1   MEKNYLSTSLLDYKQQHNGKLLVKVPPQYTSKTCSHCGSINPRLKLNHRQYWCPDCGYKE  60
           MEKNYLSTSLLDYKQQHNGKLL+KVPPQYTSKTCSHCGSINP+LKLNHRQY C+DCGYKE
Sbjct  1   MEKNYLSTSLLDYKQQHNGKLLMKVPPQYTSKTCSHCGSINPKLKLNHRQYLCSDCGYKE  60

Query  61  HRDINAANNIEQR  73
           HRDINAANNI ++
Sbjct  61  HRDINAANNILNK  73

14) Pnap_3404 in NC_008781


> NC_017368_P1|1|G1|385217569|YP_005779045.1|Helicobacter_pylori_F16|+|1..270|tnpB|HPF16_0810|IS606 
transposase
Length=89

 Score = 54.0 bits (185),  Expect = 7e-09, Method: Compositional matrix adjust.
 Identities = 30/71 (43%), Positives = 45/71 (64%), Gaps = 5/71 (7%)

Query  15  TLLEYKSHQAGIVFEEVRESYTTQTCSCCGVIPASSPKGRAGLGIREWTCSDCGAVHDRD  74
           +LL+YK ++ G ++  V   YT++TCS CG I +     +  L  R+  CSDCG  ++RD
Sbjct  9   SLLDYKQQHNGKLLMKVPPQYTSKTCSHCGSINP-----KLKLNHRQYLCSDCGYKEHRD  63

Query  75  TNAAKNILARG  85
            NAA+NIL +G
Sbjct  64  INAANNILNKG  74

15) Bcoa_1003 in NC_016023


> NC_017368_P1|1|G1|385217569|YP_005779045.1|Helicobacter_pylori_F16|+|1..270|tnpB|HPF16_0810|IS606 
transposase
Length=89

 Score = 50.5 bits (172),  Expect = 8e-08, Method: Compositional matrix adjust.
 Identities = 32/75 (43%), Positives = 53/75 (71%), Gaps = 3/75 (4%)

Query  23  TTFLAYKLKEQGKQLVKIDKWFPSTKKCSCCGAEKP-VKLSERTYRCS-CGYAADRDYNS  80
           T++L YK +++GK L+K+   + ++K CS CG+ +P +KL++R Y CS CGY  +RD N+
Sbjct  8   TSLLDYKQQHNGKLLMKVPPQY-TSKTCSHCGSINPKLKLNHRQYLCSDCGYKEHRDINA  66

Query  81  AINIKNEGIRLLALS  95
           A NI N G+ L+ ++
Sbjct  67  ANNILNKGLSLFRVG  81

16) R0052_01045 in NC_018528


> NC_017368_P1|1|G1|385217569|YP_005779045.1|Helicobacter_pylori_F16|+|1..270|tnpB|HPF16_0810|IS606 
transposase
Length=89

 Score = 50.0 bits (170),  Expect = 1e-07, Method: Compositional matrix adjust.
 Identities = 29/65 (45%), Positives = 43/65 (67%), Gaps = 0/65 (0%)

Query  1   MLEYKCEWYGKKLIAVDPKNTSRICSKCGYNSGAKPLEIREWICPKCQTKHDRDINAAVN  60
           +L+YK +  GK L+ V P+ TS+ CS CG  +    L+ R+ +C+ C  K++RDINAA N
Sbjct  10  LLDYKQQHNGKLLMKVPPQYTSKTCSHCGSINPKLKLNHRQYLCSDCGYKEHRDINAANN  69

Query  61  ILHKE  65
           IL+K 
Sbjct  70  ILNKG  74

17) MCON_3227 in NC_015416


> NC_017368_P1|1|G1|385217569|YP_005779045.1|Helicobacter_pylori_F16|+|1..270|tnpB|HPF16_0810|IS606 
transposase
Length=89

 Score = 46.6 bits (157),  Expect = 1e-06, Method: Compositional matrix adjust.
 Identities = 29/67 (44%), Positives = 41/67 (62%), Gaps = 1/67 (1%)

Query  2   TLTSYKAASAGSVVVLVDPRNTSKMCSRCGTLIEK-SLSDRVHNCTLCGLSMDRDWNAAI  60
           +L  YK    G +++ V P+ TSK CS+CG++  K  L++R   C+ CG   +RD NAA 
Sbjct  9   SLLDYKQQHNGKLLMKVPPQYTSKTCSHCGSINPKLKLNHRQYLCSDCGYKEHRDINAAN  68

Query  61  NILRLGL  67
           NIL  GL
Sbjct  69  NILNKGL  75