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Homologs of tnpB gene of NC_017365_P1

protein-level

Hit (GenBank Accn)

Product

Source Genome

Eval.

Ident.(%)

1) tnpB
( YP_005774523.1 )

IS606 transposase

NC_017365
(Helicobacter pylori F30)

8e-33

100

2) K747_06815
( YP_007979550.1 )

transposase

NC_021215
(Helicobacter pylori UM032)

1e-26

3) K748_08055
( YP_008337465.1 )

transposase

NC_021882
(Helicobacter pylori UM298)

1e-26

4) K749_01450
( YP_007980087.1 )

transposase

NC_021216
(Helicobacter pylori UM299)

1e-26

5) tnpB
( YP_005779045.1 )

IS606 transposase

NC_017368
(Helicobacter pylori F16)

8e-27

6) tnpB
( YP_005770140.1 )

transposase

NC_017360
(Helicobacter pylori 35A)

2e-26

7) tnpB
( YP_005777289.1 )

IS606 transposase

NC_017367
(Helicobacter pylori F57)

2e-25

8) HPOK113_0566
( YP_007536680.1 )

IS606 transposase

NC_020508
(Helicobacter pylori OK113)

7e-25

9) MWE_0972
( YP_006338464.1 )

IS606 transposase

NC_017926
(Helicobacter pylori XZ274)

5e-24

10) tnpB3
( YP_005785435.1 )

transposase

NC_017375
(Helicobacter pylori 83)

6e-23

11) tnpB
( YP_005775748.1 )

IS606 transposase

NC_017366
(Helicobacter pylori F32)

4e-19

12) NIES39_H00500
( YP_005069513.1 )

hypothetical protein

NC_016640
(Arthrospira platensis NIES-39)

7e-07

13) NIES39_Q00830
( YP_005072629.1 )

transposase

NC_016640
(Arthrospira platensis NIES-39)

3e-06

14) R0052_01045
( YP_006655039.1 )

transposase

NC_018528
(Lactobacillus helveticus R0052)

2e-05

15) MCON_3227
( YP_004385327.1 )

transposase IS605 family

NC_015416
(Methanosaeta concilii GP6)

9e-05

• Sequence Alignments

1) tnpB in NC_017365


> NC_017365_P1|1|G1|384899143|YP_005774523.1|Helicobacter_pylori_F30|+|1..240|tnpB|HPF30_0778|IS606 
transposase
Length=79

 Score =  133 bits (488),  Expect = 8e-33, Method: Compositional matrix adjust.
 Identities = 79/79 (100%), Positives = 79/79 (100%), Gaps = 0/79 (0%)

Query  1   MEKNYLSTSLLDYKQQHNGKLLVKVPPQYTSKTCSHCGSINPRLKLNHRQYWCPDCGYKE  60
           MEKNYLSTSLLDYKQQHNGKLLVKVPPQYTSKTCSHCGSINPRLKLNHRQYWCPDCGYKE
Sbjct  1   MEKNYLSTSLLDYKQQHNGKLLVKVPPQYTSKTCSHCGSINPRLKLNHRQYWCPDCGYKE  60

Query  61  HRDINAANNIEQRVKSFLG  79
           HRDINAANNIEQRVKSFLG
Sbjct  61  HRDINAANNIEQRVKSFLG  79

2) K747_06815 in NC_021215


> NC_017365_P1|1|G1|384899143|YP_005774523.1|Helicobacter_pylori_F30|+|1..240|tnpB|HPF30_0778|IS606 
transposase
Length=79

 Score =  113 bits (410),  Expect = 1e-26, Method: Compositional matrix adjust.
 Identities = 66/70 (95%), Positives = 68/70 (98%), Gaps = 0/70 (0%)

Query  1   MEKNYLSTSLLDYKQQHNGKLLVKVPPQYTSKTCYHCGSINPKLKLNHRQYLCPDCGYKE  60
           MEKNYLSTSLLDYKQQHNGKLLVKVPPQYTSKTC HCGSINP+LKLNHRQY CPDCGYKE
Sbjct  1   MEKNYLSTSLLDYKQQHNGKLLVKVPPQYTSKTCSHCGSINPRLKLNHRQYWCPDCGYKE  60

Query  61  HRNINAANNI  70
           HR+INAANNI
Sbjct  61  HRDINAANNI  70

3) K748_08055 in NC_021882


> NC_017365_P1|1|G1|384899143|YP_005774523.1|Helicobacter_pylori_F30|+|1..240|tnpB|HPF30_0778|IS606 
transposase
Length=79

 Score =  113 bits (410),  Expect = 1e-26, Method: Compositional matrix adjust.
 Identities = 66/70 (95%), Positives = 68/70 (98%), Gaps = 0/70 (0%)

Query  1   MEKNYLSTSLLDYKQQHNGKLLVKVPPQYTSKTCYHCGSINPKLKLNHRQYLCPDCGYKE  60
           MEKNYLSTSLLDYKQQHNGKLLVKVPPQYTSKTC HCGSINP+LKLNHRQY CPDCGYKE
Sbjct  1   MEKNYLSTSLLDYKQQHNGKLLVKVPPQYTSKTCSHCGSINPRLKLNHRQYWCPDCGYKE  60

Query  61  HRNINAANNI  70
           HR+INAANNI
Sbjct  61  HRDINAANNI  70

4) K749_01450 in NC_021216


> NC_017365_P1|1|G1|384899143|YP_005774523.1|Helicobacter_pylori_F30|+|1..240|tnpB|HPF30_0778|IS606 
transposase
Length=79

 Score =  113 bits (410),  Expect = 1e-26, Method: Compositional matrix adjust.
 Identities = 66/70 (95%), Positives = 68/70 (98%), Gaps = 0/70 (0%)

Query  1   MEKNYLSTSLLDYKQQHNGKLLVKVPPQYTSKTCYHCGSINPKLKLNHRQYLCPDCGYKE  60
           MEKNYLSTSLLDYKQQHNGKLLVKVPPQYTSKTC HCGSINP+LKLNHRQY CPDCGYKE
Sbjct  1   MEKNYLSTSLLDYKQQHNGKLLVKVPPQYTSKTCSHCGSINPRLKLNHRQYWCPDCGYKE  60

Query  61  HRNINAANNI  70
           HR+INAANNI
Sbjct  61  HRDINAANNI  70

5) tnpB in NC_017368


> NC_017365_P1|1|G1|384899143|YP_005774523.1|Helicobacter_pylori_F30|+|1..240|tnpB|HPF30_0778|IS606 
transposase
Length=79

 Score =  113 bits (412),  Expect = 8e-27, Method: Compositional matrix adjust.
 Identities = 66/73 (91%), Positives = 71/73 (98%), Gaps = 0/73 (0%)

Query  1   MEKNYLSTSLLDYKQQHNGKLLMKVPPQYTSKTCSHCGSINPKLKLNHRQYLCSDCGYKE  60
           MEKNYLSTSLLDYKQQHNGKLL+KVPPQYTSKTCSHCGSINP+LKLNHRQY C+DCGYKE
Sbjct  1   MEKNYLSTSLLDYKQQHNGKLLVKVPPQYTSKTCSHCGSINPRLKLNHRQYWCPDCGYKE  60

Query  61  HRDINAANNILNK  73
           HRDINAANNI ++
Sbjct  61  HRDINAANNIEQR  73

6) tnpB in NC_017360


> NC_017365_P1|1|G1|384899143|YP_005774523.1|Helicobacter_pylori_F30|+|1..240|tnpB|HPF30_0778|IS606 
transposase
Length=79

 Score =  112 bits (407),  Expect = 2e-26, Method: Compositional matrix adjust.
 Identities = 65/73 (90%), Positives = 70/73 (96%), Gaps = 0/73 (0%)

Query  1   MEKNYLSTSLLDYKQQHNGKLLVKVPPQYTSKTCCNCGSINPKLKLNHKQYLCPDCGYKE  60
           MEKNYLSTSLLDYKQQHNGKLLVKVPPQYTSKTC +CGSINP+LKLNH+QY CPDCGYKE
Sbjct  1   MEKNYLSTSLLDYKQQHNGKLLVKVPPQYTSKTCSHCGSINPRLKLNHRQYWCPDCGYKE  60

Query  61  HRDINAANNILNK  73
           HRDINAANNI ++
Sbjct  61  HRDINAANNIEQR  73

7) tnpB in NC_017367


> NC_017365_P1|1|G1|384899143|YP_005774523.1|Helicobacter_pylori_F30|+|1..240|tnpB|HPF30_0778|IS606 
transposase
Length=79

 Score =  109 bits (396),  Expect = 2e-25, Method: Compositional matrix adjust.
 Identities = 65/73 (90%), Positives = 69/73 (95%), Gaps = 0/73 (0%)

Query  1   MEKNYLSTSLLDYKQQHNGKLLVKVLPQYTSKTCYHCGSINPKLKLNHRQYLCSDCGYKE  60
           MEKNYLSTSLLDYKQQHNGKLLVKV PQYTSKTC HCGSINP+LKLNHRQY C+DCGYKE
Sbjct  1   MEKNYLSTSLLDYKQQHNGKLLVKVPPQYTSKTCSHCGSINPRLKLNHRQYWCPDCGYKE  60

Query  61  HRDINAANNILNK  73
           HRDINAANNI ++
Sbjct  61  HRDINAANNIEQR  73

8) HPOK113_0566 in NC_020508


> NC_017365_P1|1|G1|384899143|YP_005774523.1|Helicobacter_pylori_F30|+|1..240|tnpB|HPF30_0778|IS606 
transposase
Length=79

 Score =  106 bits (387),  Expect = 7e-25, Method: Compositional matrix adjust.
 Identities = 63/70 (90%), Positives = 66/70 (95%), Gaps = 0/70 (0%)

Query  1   MEKNYLSTSLLNYKQQHNGKLLVRVPPQYTSKTCYHCGSINHKLKLNHRQYLCPDCGHKE  60
           MEKNYLSTSLL+YKQQHNGKLLV+VPPQYTSKTC HCGSIN +LKLNHRQY CPDCG KE
Sbjct  1   MEKNYLSTSLLDYKQQHNGKLLVKVPPQYTSKTCSHCGSINPRLKLNHRQYWCPDCGYKE  60

Query  61  HRDINAANNI  70
           HRDINAANNI
Sbjct  61  HRDINAANNI  70

9) MWE_0972 in NC_017926


> NC_017365_P1|1|G1|384899143|YP_005774523.1|Helicobacter_pylori_F30|+|1..240|tnpB|HPF30_0778|IS606 
transposase
Length=79

 Score =  104 bits (377),  Expect = 5e-24, Method: Compositional matrix adjust.
 Identities = 60/69 (87%), Positives = 65/69 (95%), Gaps = 0/69 (0%)

Query  1   MLDYKQQHNGKLLVKVPPQYTSKTCSHCGSINPKLKLNHRQYLCPDCGYKEHRDINAANN  60
           +LDYKQQHNGKLLVKVPPQYTSKTCSHCGSINP+LKLNHRQY CPDCGYKEHRDINAANN
Sbjct  10  LLDYKQQHNGKLLVKVPPQYTSKTCSHCGSINPRLKLNHRQYWCPDCGYKEHRDINAANN  69

Query  61  ILNKGLSFF  69
           I ++  SF+
Sbjct  70  IEQRVKSFL  78

10) tnpB3 in NC_017375


> NC_017365_P1|1|G1|384899143|YP_005774523.1|Helicobacter_pylori_F30|+|1..240|tnpB|HPF30_0778|IS606 
transposase
Length=79

 Score =  100 bits (363),  Expect = 6e-23, Method: Compositional matrix adjust.
 Identities = 57/71 (81%), Positives = 64/71 (91%), Gaps = 0/71 (0%)

Query  3   DLLDYKQQHNGKLLVKVPPQYTSKTCCNCGSINPKLKLNHKQYLCPDCGYKEHRDINATN  62
            LLDYKQQHNGKLLVKVPPQYTSKTC +CGSINP+LKLNH+QY CPDCGYKEHRDINA+N
Sbjct  9   SLLDYKQQHNGKLLVKVPPQYTSKTCSHCGSINPRLKLNHRQYWCPDCGYKEHRDINAAN  68

Query  63  NILSKGLSLFG  73
           NI  +  S++G
Sbjct  69  NIEQRVKSFLG  79

11) tnpB in NC_017366


> NC_017365_P1|1|G1|384899143|YP_005774523.1|Helicobacter_pylori_F30|+|1..240|tnpB|HPF30_0778|IS606 
transposase
Length=79

 Score = 88.1 bits (315),  Expect = 4e-19, Method: Compositional matrix adjust.
 Identities = 53/57 (93%), Positives = 55/57 (97%), Gaps = 0/57 (0%)

Query  1   MKVPPQYTSKTCSHCGSINPKLKLNHRQYLCPDCGYKEHRDINAANNIEQRVKSFWG  57
           +KVPPQYTSKTCSHCGSINP+LKLNHRQY CPDCGYKEHRDINAANNIEQRVKSF G
Sbjct  23  VKVPPQYTSKTCSHCGSINPRLKLNHRQYWCPDCGYKEHRDINAANNIEQRVKSFLG  79

12) NIES39_H00500 in NC_016640


> NC_017365_P1|1|G1|384899143|YP_005774523.1|Helicobacter_pylori_F30|+|1..240|tnpB|HPF30_0778|IS606 
transposase
Length=79

 Score = 47.4 bits (160),  Expect = 7e-07, Method: Compositional matrix adjust.
 Identities = 29/67 (44%), Positives = 43/67 (65%), Gaps = 1/67 (1%)

Query  6   HYRFQTLLKHQAAKYGCVVVDVTKEYTSKTCSKCGHIHTQLG-GNKQFVCPNCGHRIGRD  64
           +Y   +LL  +    G ++V V  +YTSKTCS CG I+ +L   ++Q+ CP+CG +  RD
Sbjct  4   NYLSTSLLDYKQQHNGKLLVKVPPQYTSKTCSHCGSINPRLKLNHRQYWCPDCGYKEHRD  63

Query  65  INGAFNI  71
           IN+A NI
Sbjct  64  INAANNI  70

13) NIES39_Q00830 in NC_016640


> NC_017365_P1|1|G1|384899143|YP_005774523.1|Helicobacter_pylori_F30|+|1..240|tnpB|HPF30_0778|IS606 
transposase
Length=79

 Score = 45.6 bits (153),  Expect = 3e-06, Method: Compositional matrix adjust.
 Identities = 25/61 (41%), Positives = 37/61 (61%), Gaps = 1/61 (1%)

Query  3   QAERKGVLVVRCNESYTSKTCHHCGQIHDKLG-GSKVFKCPNCGYTAPRDWVGARNIMLR  61
           + +++G L+V+    YTSKTC HCG I+ +L    + + CP+CGY   RD  +A NI  R
Sbjct  14  KQQHNGKLLVKVPPQYTSKTCSHCGSINPRLKLNHRQYWCPDCGYKEHRDINAANNIEQR  73

Query  62  A  62
            
Sbjct  74  V  74

14) R0052_01045 in NC_018528


> NC_017365_P1|1|G1|384899143|YP_005774523.1|Helicobacter_pylori_F30|+|1..240|tnpB|HPF30_0778|IS606 
transposase
Length=79

 Score = 42.9 bits (143),  Expect = 2e-05, Method: Compositional matrix adjust.
 Identities = 28/64 (44%), Positives = 41/64 (65%), Gaps = 0/64 (0%)

Query  1   MLEYKCEWYGKKLIAVDPKNTSRICSKCGYNSGAKPLEIREWICPKCQTKHDRDINAAVN  60
           +L+YK +  GK L+ V P+ TS+ CS CG  +    L+ R+  CP C  K++RDINAA N
Sbjct  10  LLDYKQQHNGKLLVKVPPQYTSKTCSHCGSINPRLKLNHRQYWCPDCGYKEHRDINAANN  69

Query  61  ILHK  64
           I ++
Sbjct  70  IEQR  73

15) MCON_3227 in NC_015416


> NC_017365_P1|1|G1|384899143|YP_005774523.1|Helicobacter_pylori_F30|+|1..240|tnpB|HPF30_0778|IS606 
transposase
Length=79

 Score = 40.6 bits (134),  Expect = 9e-05, Method: Compositional matrix adjust.
 Identities = 26/62 (42%), Positives = 37/62 (60%), Gaps = 1/62 (1%)

Query  2   TLTSYKAASAGSVVVLVDPRNTSKMCSRCGTLIEK-SLSDRVHNCTLCGLSMDRDWNAAI  60
           +L  YK    G ++V V P+ TSK CS+CG++  +  L++R   C  CG   +RD NAA 
Sbjct  9   SLLDYKQQHNGKLLVKVPPQYTSKTCSHCGSINPRLKLNHRQYWCPDCGYKEHRDINAAN  68

Query  61  NI  62
           NI
Sbjct  69  NI  70