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PAthogenisity Island DataBase (PAI DB)

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Homologs of hrpA gene of L41862

protein-level

Hit (GenBank Accn)

Product

Source Genome

Eval.

Ident.(%)

1) hrpA2
( YP_273531.1 )

type III helper protein HrpA2

NC_005773
(Pseudomonas syringae 1448A)

2e-40

2) HrpA2
( YP_234284.1 )

type III helper protein HrpA2

NC_007005
(Pseudomonas syringae B728a)

4e-38

• Sequence Alignments

1) hrpA2 in NC_005773


> L41862|1|G1|790915|AAB00135.1|Pseudomonas_syringae_Race_4|+|99..425|hrpA|-|-
Length=108

 Score =  158 bits (583),  Expect = 2e-40, Method: Compositional matrix adjust.
 Identities = 105/108 (98%), Positives = 107/108 (99%), Gaps = 0/108 (0%)

Query  1    MNIMSSLTNAGRGVVNTVGGAAQGINSVKSSADRNIALTKNTGSTDSIDATRSSISKGDA  60
            M+I+SSLTNAGRGVVNTVGGAAQGINSVKSSADRNIALTKNTGSTDSIDATRSSISKGDA
Sbjct  1    MSIISSLTNAGRGVVNTVGGAAQGINSVKSSADRNIALTKNTGSTDSIDATRSSISKGDA  60

Query  61   KSAELDGTANEENGLLRETSMLAGFEDKKEALSNQIVASKIRNSVVQF  108
             SAELDGTANEENGLLRETSMLAGFEDKKEALSNQIVASKIRNSVVQF
Sbjct  61   PSAELDGTANEENGLLRETSMLAGFEDKKEALSNQIVASKIRNSVVQF  108

2) HrpA2 in NC_007005


> L41862|1|G1|790915|AAB00135.1|Pseudomonas_syringae_Race_4|+|99..425|hrpA|-|-
Length=108

 Score =  150 bits (553),  Expect = 4e-38, Method: Compositional matrix adjust.
 Identities = 98/108 (91%), Positives = 103/108 (96%), Gaps = 0/108 (0%)

Query  1    MTIMSSLAGAGRGVVNTIGGAAQGINSVKSSADRNAALVSNTGSTDSIDATRSSISKGDA  60
            M+I+SSL+ AGRGVVNT+GGAAQGINSVKSSADRN AL  NTGSTDSIDATRSSISKGDA
Sbjct  1    MSIISSLTNAGRGVVNTVGGAAQGINSVKSSADRNIALTKNTGSTDSIDATRSSISKGDA  60

Query  61   KSAELDGTANEENGLLRESSMLAGFEDKKEALSNQIVASKIRNSVVQF  108
             SAELDGTANEENGLLRE+SMLAGFEDKKEALSNQIVASKIRNSVVQF
Sbjct  61   PSAELDGTANEENGLLRETSMLAGFEDKKEALSNQIVASKIRNSVVQF  108