>JQ685154|1|G1|442739093|AGC69806.1|Helicobacter_pylori_J166_isolate_31063-2.8/rOut1|+|1..3555|cagA|-|cag
Length = 3555
Score = 2549 bits (6577), Expect = 0.0
Identities = 1404/1566 (90%)
Strand = Plus / Plus
Query: 1034 tacaagttcaaccagttaccgattcacaataacgctctgtcttctatgctaatggggagt 1093
|||||||||||||| ||| ||||||||||||||||||||||||| || |||||||||||
Sbjct: 871 tacaagttcaaccaattattgattcacaataacgctctgtcttctgtgttaatggggagt 930
Query: 1094 catagcagcatagaacctgaaaaagtttcattgttgtatggggataatggtggtcctgaa 1153
||| ||||||||||||||||||||||||| |||||||| | |||||||| ||||||
Sbjct: 931 catgatggcatagaacctgaaaaagtttcattattgtatggaaacaatggtggccctgaa 990
Query: 1154 gctaggcatgattggaacgccaccgttggttataaaaaccaacaaggcaacaatgtggcc 1213
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 991 gctaggcatgattggaacgccaccgttggtcataaaaaccaacaaggcaacaatgtggct 1050
Query: 1214 acactcatcaatgcgcatcttaaaaacggcagcgggttagtcatagcgggtaatggaaat 1273
|||||||| |||| |||| | ||||||||||| |||||||||||||| ||| || ||
Sbjct: 1051 acactcattaatgtgcatatgaaaaacggcagtgggttagtcatagcaggtggtgagaaa 1110
Query: 1274 gggattaacaaccctagcttctatctctacaaaacagaccaactcacaggcttggaacaa 1333
||| ||||||||||||| || |||||||||||| ||| || |||||||||||| |||||
Sbjct: 1111 ggggttaacaaccctagtttttatctctacaaagaagatcagctcacaggcttgaaacaa 1170
Query: 1334 gcgttgagtcaagaagagatccaaaacaaagtggatttcatggaacttcttgcacaaaac 1393
|| ||||||||| ||||||||||||||||||| |||||||||||| ||||||||||||||
Sbjct: 1171 gcattgagtcaaaaagagatccaaaacaaagtagatttcatggaatttcttgcacaaaac 1230
Query: 1394 aacgctagattagataacttgagcgaggaagagaaagaaaagttccaaactgagattgga 1453
|| |||| |||||| ||||||||| || ||||||||||||| ||||||| |||||||| |
Sbjct: 1231 aatgctaaattagacaacttgagcaagaaagagaaagaaaaattccaaaatgagattgaa 1290
Query: 1454 aatttccaaaaagaccctaaggcttatttagactccctagggaatgatcgcattgctttt 1513
|||| ||||||||| ||||||||||||||||| ||||||||||||||| ||||||||||
Sbjct: 1291 gattttcaaaaagactctaaggcttatttagacgccctagggaatgatcacattgctttt 1350
Query: 1514 gtttctaaaaaagaccaaaagcatttagctttggttactgagtttggtaatggggaattg 1573
||||||||||||||| |||| ||||||||||| ||||||||||||||||||||||| |||
Sbjct: 1351 gtttctaaaaaagacaaaaaacatttagctttagttactgagtttggtaatggggatttg 1410
Query: 1574 agctatactctcaaagattatgggaaaaaacaagatagagctttagatagggagacaaaa 1633
||||| ||||| ||||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct: 1411 agctacactcttaaagattatgggaaaaaacaagataaagctttagatagggagataaaa 1470
Query: 1634 accactcttcaaggtaacctaaagcatgatggcgtgatgtttgtcaattattccaatttc 1693
||||||||||||||||||||||| |||||||||||||||||||| |||||||| ||||||
Sbjct: 1471 accactcttcaaggtaacctaaaacatgatggcgtgatgtttgttaattattctaatttc 1530
Query: 1694 aaatacaccaacgcctccaagagtcctgatgagggtataggcgctacgaatggcgtttcc 1753
|||||||||||||||||||||||||||||| ||||| | || ||||||||||||||||||
Sbjct: 1531 aaatacaccaacgcctccaagagtcctgataagggtgtgggtgctacgaatggcgtttcc 1590
Query: 1754 catttggaagcaaattttagcaaggtggctgtctttaatttgcctgatttaaatggtctc 1813
||||||||||||||| |||||||||| |||||||||||||||||| |||||||| ||||
Sbjct: 1591 catttggaagcaaatcttagcaaggtagctgtctttaatttgcctaatttaaataatctc 1650
Query: 1814 gctatctctagttttgcaaggcggaatttagaggataaactgatcgctaaaggattgccc 1873
|||||| |||||| | |||||| | ||||| || |||||| |||||||||||| ||
Sbjct: 1651 gctatcactagttatataaggcgagacttagaagagaaactgggggctaaaggattgtcc 1710
Query: 1874 ccaaaagacgctaataagatcatcaaagactttttgaacagcaacaaggaattgcttgaa 1933
| | |||| ||||||||| ||||||||||||||||||||||||||||||||||| ||| |
Sbjct: 1711 ctacaagaagctaataagctcatcaaagactttttgaacagcaacaaggaattggttgga 1770
Query: 1934 aaagctttagacttcaataaagctgtagctgaagctaaaaatacaggcaattatgacgga 1993
|||| |||| || |||||||||||||||||||||||||||| |||||||||||||| | |
Sbjct: 1771 aaagttttaaacctcaataaagctgtagctgaagctaaaaacacaggcaattatgatgaa 1830
Query: 1994 gtgaaaaaagctcaaaaagatcttgaaaaatctataaggaaacgagagcgtttagagcaa 2053
|||||||||||||| |||||||||||||||||||||||||||||||||| ||||||| ||
Sbjct: 1831 gtgaaaaaagctcagaaagatcttgaaaaatctataaggaaacgagagcatttagagaaa 1890
Query: 2054 gaaataacgaaaaaatttgagaacaagagcggcaacaaaaataaaatggaagcgaaagtt 2113
||| || ||||||||| ||||||| | || ||||||||||| ||||||||| |||| |
Sbjct: 1891 gaagtagtgaaaaaattggagaacagaaacgacaacaaaaatagaatggaagcaaaagct 1950
Query: 2114 caagctaacagccaaaaagatgggatttttaagcttatcaatgaagaggctcataaggaa 2173
||||||||||||||||||||| ||||||| |||||||| |||||||| |||||||
Sbjct: 1951 caagctaacagccaaaaagataagatttttgcaattatcaataaagaggctagtaaggaa 2010
Query: 2174 gcaagaatcgccgcttacgctcagaatcttaaaggcatcaggagggaattgtttgataaa 2233
|||||| |||||| || |||||| |||||||||||| | ||||||||||||||
Sbjct: 2011 gcaagagcgaccgcttgcgttcagaagtttaaaggcatcaaaatagaattgtttgataag 2070
Query: 2234 gttaaaaatctcaacaagaatttgaaagactttgataaatcttttgatgcgctcaaaagt 2293
|| |||| ||||||||||||||||||||||||||||||||||||||| |||||| |
Sbjct: 2071 tttgaaaacatcaacaagaatttgaaagactttgataaatcttttgatgacttcaaaaat 2130
Query: 2294 ggcaaaaataaggatttcagcaaggcagaagaaacgctaaaagcccttgaaagctcggtg 2353
|||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct: 2131 ggcaaaaataaggatttcagcaaggcagaagaaacgctaaaagcccttaaaggctcggtg 2190
Query: 2354 aaagatttgggtatcaatccagaatggatttcaaaagttgaaaaccttaatgcagctttg 2413
|| ||||| || ||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 2191 aaggatttaggcatcaatccagaatggatttcaaaagttgaaaaccttaatacagctttg 2250
Query: 2414 aatgaattcaaaaatggcaaaaataaggatttcagcaaggtaacacaagcaaaaagcgac 2473
||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 2251 aatgacttcaaaaatggcaaaaataaggatttcagcaaggtaacgcaagcaaaaagcgac 2310
Query: 2474 cttgaaaattccattaaggatgtgctcatcaatcaagagataacggataaagttgacaat 2533
||||||||||||||||| |||||| ||||||||||| |||||||||||||||||||||||
Sbjct: 2311 cttgaaaattccattaaagatgtgatcatcaatcaaaagataacggataaagttgacaat 2370
Query: 2534 ctcaatcaggctgtattaagggctaaagcgataggcgattttagtggggtagagcaagag 2593
|||||||| || |||| | |||||||| | ||||||||| |||||||||||||||| |
Sbjct: 2371 ctcaatcaagcggtatcagtggctaaagaaacaggcgatttcagtggggtagagcaagcg 2430
Query: 2594 ctagcc 2599
||||||
Sbjct: 2431 ctagcc 2436
Score = 876 bits (2259), Expect = e-255
Identities = 476/518 (92%)
Strand = Plus / Plus
Query: 56 cggcttttaatccacaacaatttatcaataatcttcaagtggcttttattaaacttgata 115
|||||||||| || || |||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 41 cggcttttaacccgcagcaatttatcaataatcttcaagtggcttttattaaagttgata 100
Query: 116 gtgctgtcgcttcatttgatcccgatcaaaaaccaatcgttgataagaacgatagggata 175
|||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct: 101 acgctgtcgcttcatttgatcctgatcaaaaaccaatcgttgataagaatgatagggata 160
Query: 176 acaggcaagcttttaatgtaatctcgcaattaagggaagaatacgccaataaagcgatca 235
|||||||||||||| | ||||||||| ||||||| |||| ||| |||||||||||||
Sbjct: 161 acaggcaagcttttgagaaaatctcgcagctaagggaggaattcgctaataaagcgatca 220
Query: 236 aaaatcccaccaaaaagaatcagtatttttcagactttatcgataaaagcaatgatttga 295
||||||| |||||||||||||||||||||||| |||||||| ||| |||| |||||| |
Sbjct: 221 aaaatcctaccaaaaagaatcagtatttttcaaactttatcagtaagagcagtgatttaa 280
Query: 296 tcaacaaaaacgatctcattgatacagattcttccacaaagagctttgaaaaatttgggg 355
|||||||| ||| |||||||||||||| |||||||| ||| |||||| | |||||||||
Sbjct: 281 tcaacaaagacggtctcattgatacaggttcttccataaaaagctttcagaaatttggga 340
Query: 356 ctcagcgttaccaaatttttatgaattgggtgtcccatcaaaaagatccgtctaaaatca 415
||||| ||||||||||||||||||||||||||||||||||||||||||| ||| ||||||
Sbjct: 341 ctcagtgttaccaaatttttatgaattgggtgtcccatcaaaaagatccatctcaaatca 400
Query: 416 acacccaaaaaatccgagattttatggaaaatatcatacaaccccctatctctgatgata 475
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 401 acacccaaaaaatccgaggttttatggaaaatatcatacaaccccctatctctgatgata 460
Query: 476 aagaaaaagcggagtttttgaggtctgccaaacaatcttttgcaggaattatcataggga 535
|||| |||||||||||||||||||||||||||||| |||||||||||||||||||||| |
Sbjct: 461 aagagaaagcggagtttttgaggtctgccaaacaagcttttgcaggaattatcataggaa 520
Query: 536 accaaacccgatcggatgaaaaattcatgggcgttttt 573
|||||| |||||||||| |||||||||||||||| |||
Sbjct: 521 accaaatccgatcggatcaaaaattcatgggcgtgttt 558
Score = 615 bits (1588), Expect = e-176
Identities = 346/391 (88%)
Strand = Plus / Plus
Query: 3016 agcgaaattggacaattacgctactaacagccacacacgcattaatagcaatgtcaaaaa 3075
|||||||||||||||||| |||| ||||||||||| ||||||||||||||||||||||||
Sbjct: 3165 agcgaaattggacaattatgctattaacagccacatacgcattaatagcaatgtcaaaaa 3224
Query: 3076 tggaacaatcaatgaaaaagcgatcggcatgctaacgcaaaaaaaccctgagtggctcaa 3135
|||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct: 3225 tggaacaatcaatgaaaaagtgaccggcatgctaacgcaaaaaaaccctgagtggctcaa 3284
Query: 3136 gcttgtgaatgataagatagttgcgcataatgtgggaagcgctcctttgtcaggttatga 3195
||| |||||||||||||||||||| |||||||||||||||| ||||||||||| |||||
Sbjct: 3285 gctcgtgaatgataagatagttgcacataatgtgggaagcgttcctttgtcagagtatga 3344
Query: 3196 taaaattggattcaaccaaaagaatatgaaaggttattctgattcgttcaggttttccac 3255
||||||||| |||||||| || |||||||||| |||||||||||| |||| |||||||||
Sbjct: 3345 taaaattggcttcaaccagaaaaatatgaaagattattctgattcattcaagttttccac 3404
Query: 3256 caagttgagcaatgccgtaaaaaacattaagtctgactttaagcaacttttaaccgattg 3315
|| |||||||||||| |||||| |||||||||||| |||| |||| |||||||| ||
Sbjct: 3405 caggttgagcaatgctgtaaaagacattaagtctggctttgtgcaatttttaaccaatac 3464
Query: 3316 catttctgcaggaacttacagcccgaagaaagc------ggaacatggagttaaaaatat 3369
||||| ||| |||||||| || |||||| |||||||||||| |||||||
Sbjct: 3465 attttctatgggatcttacagcttgatgaaagcaagtgtggaacatggagtcaaaaatac 3524
Query: 3370 taatacaaaaagtggtttccagaaatcttaa 3400
|||||||||| |||||||||| |||||||||
Sbjct: 3525 taatacaaaaggtggtttccaaaaatcttaa 3555
Score = 368 bits (949), Expect = e-102
Identities = 209/241 (87%)
Strand = Plus / Plus
Query: 2766 atctcggcggatcttcccctttgaaaaggtatgctaaagttgatgatctcagtaaggtag 2825
||||||||||| ||| ||||||||||||| ||| ||||||||||||||||||||||||||
Sbjct: 2924 atctcggcggacctttccctttgaaaaggcatgataaagttgatgatctcagtaaggtag 2983
Query: 2826 ggctttcaagggagcaagaattgaatgagaaaattggcaatctcaatcaggcagtgtcag 2885
||||||||||| | ||||||||| | ||||||||| ||||||||||||||| || ||||
Sbjct: 2984 ggctttcaaggaatcaagaattggctcagaaaattgacaatctcaatcaggcggtatcag 3043
Query: 2886 aagctaaagcaggttcttttggcaacctagaacaaatgatggatggactcaaagattcta 2945
|||||||| || || ||||| ||||||||| |||||||| || |||||||||||||
Sbjct: 3044 aagctaaaacatgtcattttgacaacctagatcaaatgatagacaagctcaaagattcta 3103
Query: 2946 caaaaaagaatgttgtgaatctatggtttgaaggtgcaagaaaagtgcctattagtttgc 3005
|||||||||||||| |||||||| ||||| |||||| ||||||||||| |||||||
Sbjct: 3104 caaaaaagaatgttacgaatctatatattgaaagtgcaaaaaaagtgcctactagtttgt 3163
Query: 3006 c 3006
|
Sbjct: 3164 c 3164
Score = 350 bits (903), Expect = 1e-96
Identities = 197/221 (89%)
Strand = Plus / Plus
Query: 813 ctgttggggattggcttgatatttttttatcgtttgtatttaacaaagaacaatcttctg 872
||| ||||||||||||||||||||||||||| ||||| ||||||||| |||||||||| |
Sbjct: 620 ctggtggggattggcttgatatttttttatcatttgtgtttaacaaaaaacaatcttccg 679
Query: 873 atctcaaagaaacgctcaatcaagagccaaggcctcatgttgaacaaaatgtagcctcta 932
||||||||||||||||||||||||| ||| |||||||| ||| | |||||||| |||
Sbjct: 680 atctcaaagaaacgctcaatcaagaaccagttcctcatgtccaaccagatgtagccacta 739
Query: 933 cccccacccacatacaaggcttaccgcctgaagctagggatttgcttgatgaaaggggtg 992
|| |||| |||||||| |||||||||||||| |||| ||||| |||||||||||||||
Sbjct: 740 ccaccactgacatacaaagcttaccgcctgaatctagagatttacttgatgaaaggggta 799
Query: 993 atttttctaaattcactcttggtgatatggaaatgttggat 1033
|||||||||||||||||||||| |||||||||||||| |||
Sbjct: 800 atttttctaaattcactcttggcgatatggaaatgttagat 840
Score = 131 bits (338), Expect = 1e-30
Identities = 70/75 (93%)
Strand = Plus / Plus
Query: 2691 ctttgaaaaggtatgctaaagttgatgatctcagtaaggtagggcaatcagatagccctg 2750
|||||||| || || |||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct: 2840 ctttgaaagggcatactaaagttgatgatctcagtaaggtagggcgatcagttagccctg 2899
Query: 2751 aacccatttacgcta 2765
|||||||||||||||
Sbjct: 2900 aacccatttacgcta 2914
Score = 80 bits (207), Expect = 2e-15
Identities = 44/46 (96%)
Strand = Plus / Plus
Query: 767 gatgaatctttgaaagagaggcaagaagcacaaaacaatggagagc 812
|||||||||||||||||||||||||||||| |||| ||||||||||
Sbjct: 559 gatgaatctttgaaagagaggcaagaagcagaaaaaaatggagagc 604
Score = 30 bits (78), Expect = 2e+00
Identities = 16/17 (94%)
Strand = Plus / Plus
Query: 1 atggctaacgaaaccat 17
||| |||||||||||||
Sbjct: 1 atgactaacgaaaccat 17
Score = 15 bits (40), Expect = 7e+04
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 2603 ctcaaaag 2610
||||||||
Sbjct: 2451 ctcaaaag 2458
|
