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Homologs of cagY gene of JQ685140

26

protein-level

Hit (GenBank Accn)

Product

Source Genome

Eval.

Ident.(%)

1) K750_04135
( YP_007982183.1 )

hypothetical protein

NC_021217
(Helicobacter pylori UM037)

0.0

94

2) HPKB_0815
( YP_005762323.1 )

conjugation TrbI family protein

NC_017354
(Helicobacter pylori 52)

0.0

94

3) cagY
( YP_005774542.1 )

cag pathogenicity island protein

NC_017365
(Helicobacter pylori F30)

0.0

95

4) HPLT_02610
( YP_005772666.1 )

cag pathogenicity island protein (cag7, cagY)

NC_017362
(Helicobacter pylori Lithuania75)

0.0

95

5) HP0527
( NP_207323.1 )

cag pathogenicity island protein (cag7)

NC_000915
(Helicobacter pylori 26695)

0.0

96

6) C694_02720
( YP_006934450.1 )

cag pathogenicity island protein (cag7)

NC_018939
(Helicobacter pylori 26695)

0.0

96

7) C695_02720
( YP_006893015.1 )

cag pathogenicity island protein (cag7)

NC_018937
(Helicobacter pylori Rif1)

0.0

96

8) C730_02720
( YP_006936056.1 )

cag pathogenicity island protein (cag7)

NC_018938
(Helicobacter pylori Rif2)

0.0

96

9) HPIN_04260
( YP_005782161.1 )

cag pathogenicity island protein (cag7)

NC_017372
(Helicobacter pylori India7)

0.0

95

10) HPSNT_02715
( YP_005786683.1 )

cag pathogenicity island protein (cag7)

NC_017376
(Helicobacter pylori Santal49)

0.0

96

11) HPPN120_02565
( YP_005788189.1 )

cag pathogenicity island protein (cag7)

NC_017378
(Helicobacter pylori Puno120)

0.0

93

12) HPELS_03975
( YP_005424915.1 )

cag pathogenicity island protein (cag7)

NC_017063
(Helicobacter pylori ELS37)

0.0

88

13) HPSH169_02700
( YP_006225732.1 )

cag pathogenicity island protein (cag7)

NC_017740
(Helicobacter pylori Shi169)

0.0

88

14) HPPN135_02585
( YP_005789734.1 )

cag pathogenicity island protein

NC_017379
(Helicobacter pylori Puno135)

0.0

91

15) HPSH_04285
( YP_001910322.1 )

cag pathogenicity island protein CagY

NC_010698
(Helicobacter pylori Shi470)

0.0

91

16) K751_03260
( YP_007983632.1 )

hypothetical protein

NC_021218
(Helicobacter pylori UM066)

0.0

97

17) HMPREF4655_21077
( YP_005770164.1 )

cag pathogenicity island protein

NC_017360
(Helicobacter pylori 35A)

0.0

96

18) cag7
( YP_007538436.1 )

cag pathogenicity island protein

NC_020509
(Helicobacter pylori OK310)

0.0

91

19) cagY
( YP_005777271.1 )

cag pathogenicity island protein Y VirB10-like protein

NC_017367
(Helicobacter pylori F57)

0.0

96

20) cagY
( YP_005779063.1 )

cag island protein

NC_017368
(Helicobacter pylori F16)

0.0

88

21) HPPC18_02525
( YP_006228771.1 )

cag pathogenicity island protein Y VirB10-like protein

NC_017742
(Helicobacter pylori PeCan18)

0.0

94

22) HPSAT_04140
( YP_005768472.1 )

cag pathogenicity island protein (cagY, cag7)

NC_017359
(Helicobacter pylori Sat464)

0.0

91

23) HPV225_0522
( YP_005763455.1 )

cag pathogenicity island protein

NC_017355
(Helicobacter pylori v225d)

0.0

92

24) K748_07945
( YP_008337443.1 )

hypothetical protein

NC_021882
(Helicobacter pylori UM298)

0.0

83

25) K749_01335
( YP_007980064.1 )

hypothetical protein

NC_021216
(Helicobacter pylori UM299)

0.0

83

26) HPSH417_02515
( YP_006224150.1 )

cag pathogenicity island protein CagY

NC_017739
(Helicobacter pylori Shi417)

0.0

88

• Sequence Alignments

1) K750_04135 in NC_021217


> JQ685140|1|G1|442739065|AGC69792.1|Helicobacter_pylori_J166_isolate_MJ166sc3|+|1..6174|cagY|-|cag 
pathogenicity island protein 
Y
Length=2057

 Score = 2155 bits (8187),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 1801/1919 (94%), Positives = 1851/1919 (97%), Gaps = 6/1919 (0%)

Query  9     ETSKKTQQHSPQDLSNEEATEANHFKDLLKEESSDNH--LENSTETQTNFDGDKLEETQT  66
             ETSKKTQQHSPQDLSNEEATE NHF D  KE    ++  L+N+TET+TNFDGDK EETQT
Sbjct  139   ETSKKTQQHSPQDLSNEEATEINHFEDSSKESKESSDPYLDNPTETKTNFDGDKSEETQT  198

Query  67    QMDsggnetsessngsLADKLFKKARKLVDNKRPFTQQKNLDEETQELNEEYDQENSEYQ  126
             QMDSGG+ETSESSNGSLADKLFKKARKLVDNKRPFTQQKNLDEETQELNEE DQEN+ YQ
Sbjct  199   QMDSGGDETSESSNGSLADKLFKKARKLVDNKRPFTQQKNLDEETQELNEEDDQENNGYQ  258

Query  127   EETQTGLIDDETSKKTQQHSPQDLSNEEATEANHFKDLLKEESSDNH--LDNSTETKSNF  184
             EETQTGLIDDETSKKTQQHSPQDLSNEEATE NHF D  KE    ++  LDN+TETK+NF
Sbjct  259   EETQTGLIDDETSKKTQQHSPQDLSNEEATEINHFEDSSKESKESSDPYLDNPTETKTNF  318

Query  185   DGDKLEETQTQIDSGGNETSESSDGSLADKLFKKARKLVDNKRPFTQQKnldeetqelne  244
             DGDK EETQTQ+DSGG+ETSESS+GSLADKLFKKARKLVDNKRPFTQQKNLDEETQELNE
Sbjct  319   DGDKSEETQTQMDSGGDETSESSNGSLADKLFKKARKLVDNKRPFTQQKNLDEETQELNE  378

Query  245   eddqennGYQEETQTDLIDDETSKKTQQDSPQYSSNEEATEVNHFEDLLKEESSDNH--L  302
             EDDQENNGYQEETQT+LIDDETSKKTQQ+SPQ  SNEEATE+NHFED  KE    ++  L
Sbjct  379   EDDQENNGYQEETQTGLIDDETSKKTQQHSPQDLSNEEATEINHFEDSSKESKESSDPYL  438

Query  303   DNPTETQTNFDGDKSEEITNDSNDQEiikgskkkyiiggivvavliviilFSRSIFHYFM  362
             DNPTET+TNFD DKSEEITNDSNDQEIIKGSKKKYIIGGIVVAVLIVIILFSRSIFHYFM
Sbjct  439   DNPTETKTNFDEDKSEEITNDSNDQEIIKGSKKKYIIGGIVVAVLIVIILFSRSIFHYFM  498

Query  363   PLEDKSSRFSKDRNLYVNDEIQIRQEYNRLLKERNEKGNMIDKNLFFNDDPNRTLYNYLN  422
             PLEDKSSRFSKDRNLYVNDEIQIRQEYNRLLKERNEKGNMIDKNLFFNDDPNRTLYNYLN
Sbjct  499   PLEDKSSRFSKDRNLYVNDEIQIRQEYNRLLKERNEKGNMIDKNLFFNDDPNRTLYNYLN  558

Query  423   IAEIEDKNPLRAFYECISNGGNYEEClklikdkklqdqmkktlEAYKDCIKNAKTEEERI  482
             IAEIEDKNPLRAFYECISNGGNYEECLKLIKDKKLQDQMKKTLEAY+DCIKNAKTEEERI
Sbjct  559   IAEIEDKNPLRAFYECISNGGNYEECLKLIKDKKLQDQMKKTLEAYNDCIKNAKTEEERI  618

Query  483   KCLDLIKDENLKKSLLNQQKVQVALDCLKNAKTDEERNECLKLINDPEIREKFRKELGLQ  542
             KCLDLIKDENLKKSLLNQQKVQVALDCLKNAKTDEER+ECLKLINDPEIREKFRKEL LQ
Sbjct  619   KCLDLIKDENLKKSLLNQQKVQVALDCLKNAKTDEERKECLKLINDPEIREKFRKELELQ  678

Query  543   KELQEYKDCIKNAKTEAEKNKCLKSLSKEAIERLKQQALDCLKNAKTDEERNECLKNIPQ  602
             KELQEYKDCIKNAKTEAEKN CLK+LSKEAIERLKQQALDCLKNAKTDEERNECLKNIPQ
Sbjct  679   KELQEYKDCIKNAKTEAEKNECLKGLSKEAIERLKQQALDCLKNAKTDEERNECLKNIPQ  738

Query  603   DLQKELLADMSVKAYKDCVSKARNekekkecekLLTPEARKKLEQQVLDCLKNAKTDEER  662
             DLQKELLADMSVKAYKDCVSKARNEKEK+ECEKLLTPEARKKLEQQVLDCLKNAKTDEER
Sbjct  739   DLQKELLADMSVKAYKDCVSKARNEKEKQECEKLLTPEARKKLEQQVLDCLKNAKTDEER  798

Query  663   KKCLKDLPKDLQSDILAKESVKAYKDCVSQAKTEDEKKECeklltpeakklleeeakkSV  722
             KKCLKDLPKDLQSDILAKESVKAYKDCVSQAK E EKKECEKLLTPEAKKLLEEEAK SV
Sbjct  799   KKCLKDLPKDLQSDILAKESVKAYKDCVSQAKNEAEKKECEKLLTPEAKKLLEEEAKESV  858

Query  723   KAYLDCVSQAKTEDEKKECEKLLTPeakkkleeskksvkaYLDCVSQakteaekkecekl  782
             KAYLDCVSQAKTE EKKECEKLLTPEA+KKLEE+KKSVKAYLDCVSQAK E EKKECEKL
Sbjct  859   KAYLDCVSQAKTEAEKKECEKLLTPEARKKLEEAKKSVKAYLDCVSQAKNEDEKKECEKL  918

Query  783   ltPEAKKLLEQQALDCLKNAKTEAEKKRCVKDLPKDLQKKVLAKESVKAYLDCVSQakne  842
             LTPEA+KLLEQQALDCLKNAKT+ E+K+C+KDLPKDLQKKVLAKESVKAYLDCVSQAK E
Sbjct  919   LTPEARKLLEQQALDCLKNAKTDEERKKCLKDLPKDLQKKVLAKESVKAYLDCVSQAKTE  978

Query  843   aekkecekLLTPEARKLLEEAKESVKAYKDCVSQAKTEDEKKECeklltpeakklleeea  902
             AEKKECEKLLTPEARKLLEEAKES+KAYKDCVS+A+ E EKKECEKLLTPEAKKLLEEEA
Sbjct  979   AEKKECEKLLTPEARKLLEEAKESIKAYKDCVSKARNEKEKKECEKLLTPEAKKLLEEEA  1038

Query  903   kkSVKAYLDCVSQAKTEDEKKECEKLLTPeakkkleeskksvkaYLDCVSQakteaekke  962
             K SVKAYLDCVSQAKTE EKKECEKLLTPEAKKKLEE+KKSVKAYLDCVSQAK E EKKE
Sbjct  1039  KESVKAYLDCVSQAKTEAEKKECEKLLTPEAKKKLEEAKKSVKAYLDCVSQAKNEDEKKE  1098

Query  963   ceklltPEAKKLLEQQALDCLKNAKTEAEKKRCVKDLPKDLQKKVLAKESVKAYLDCVSR  1022
             CEKLLTPEAKKLLEQQALDCLKNAKTEA+KKRCVKDLPKDLQKKVLAKESVKAY DCVSR
Sbjct  1099  CEKLLTPEAKKLLEQQALDCLKNAKTEADKKRCVKDLPKDLQKKVLAKESVKAYKDCVSR  1158

Query  1023  ARNekekkecekLLTPeakkkleeskesvkaYLDCVSRARNekekkecekLLTPeakkkl  1082
             ARNEKEKKECEKLLTPEAKK LEE+K SVKAYLDCVS+A+ E EKKECEKLLTPEAKK L
Sbjct  1159  ARNEKEKKECEKLLTPEAKKLLEEAKKSVKAYLDCVSQAKTEAEKKECEKLLTPEAKKLL  1218

Query  1083  eeskksvkaYLDCVSQakteaekkeceklltPEAKKLLEQQALDCLKNAKTEAEKKRCVK  1142
             EE+K S+KAY DCVS+A+ E EKKECEKLLTPEAKKLLEQQALDCLKNAKTEA+KKRCVK
Sbjct  1219  EEAKESLKAYKDCVSRARNEKEKKECEKLLTPEAKKLLEQQALDCLKNAKTEADKKRCVK  1278

Query  1143  DLPKDLQKKVLAKESVKAYLDCVSRARNekekkeceklltpeakklleeakeslkaYKDC  1202
             DLPKDLQKKVLAKESVKAYLDCVSRARNEKEKKECEKLLTPEAKKLLEEAKESLKAYKDC
Sbjct  1279  DLPKDLQKKVLAKESVKAYLDCVSRARNEKEKKECEKLLTPEAKKLLEEAKESLKAYKDC  1338

Query  1203  LSQARNEEERRACEKLLTPEARKLLEQEVKKSVKAYLDCVSRARNekekkecekLLTPEA  1262
             LSQARNEEERRACEKLLTPEARKLLEQEVKKSVKAYLDCVS+A+ E EKKECEKLLTPEA
Sbjct  1339  LSQARNEEERRACEKLLTPEARKLLEQEVKKSVKAYLDCVSQAKTEAEKKECEKLLTPEA  1398

Query  1263  RKFLAKQVLNCLEKAGNEEERKACLKNLPKDLQENVLAKESLKAYKDCLSQARNEEERRA  1322
             RKFLAKQVLNCLEKAGNEEERKACLKNLPKDLQENVLAKESLKAYKDCLSQARNEEERRA
Sbjct  1399  RKFLAKQVLNCLEKAGNEEERKACLKNLPKDLQENVLAKESLKAYKDCLSQARNEEERRA  1458

Query  1323  CEKLLTPEARKLLEQEVKKSVKAYLDCVSRARNEKEKQECEKLLTPEARKFLAKELQQKD  1382
             CEKLLTPEARKLLEQEVKKSVKAYLDCVSRARNEKEK+ECEKLLTPEARKFLAKELQQKD
Sbjct  1459  CEKLLTPEARKLLEQEVKKSVKAYLDCVSRARNEKEKKECEKLLTPEARKFLAKELQQKD  1518

Query  1383  KAIKDCLKNADPNDRAAIMKCLDGLSDEEKLKYLQEAREKAVLDCLKTARTDEEKRKCQN  1442
             KAIKDCLKNADPNDRAAIMKCLDGLSDEEKLKYLQEAREKAVLDCLKTARTDEEKRKCQN
Sbjct  1519  KAIKDCLKNADPNDRAAIMKCLDGLSDEEKLKYLQEAREKAVLDCLKTARTDEEKRKCQN  1578

Query  1443  LYSDLIQEIQNKRTQNKQNQLSKTERLHQASECLDNLDDPTDQQAIEQCLEGLSDSERAL  1502
             LYSDLIQEIQNKRTQ+KQNQLSKTERLHQASECLDNLDDPTDQQAIEQCLEGLSDSERAL
Sbjct  1579  LYSDLIQEIQNKRTQSKQNQLSKTERLHQASECLDNLDDPTDQQAIEQCLEGLSDSERAL  1638

Query  1503  ILGIKRQADEVDLIYSDLRNRKTFDNMAAKGYPLLPMDFKNGGDIATINATNVDADKIAS  1562
             ILGIKRQADEVD IYSDLRNRKTFDNMAAKGYPLLPMDFKNGGDIATINATNVDADKIAS
Sbjct  1639  ILGIKRQADEVDRIYSDLRNRKTFDNMAAKGYPLLPMDFKNGGDIATINATNVDADKIAS  1698

Query  1563  DNPIYASIEPDITKQYETEKTIkdknleaklakalggnkkdddkeksekstakakaesNK  1622
             DNPIYASIEPDITKQYETEKTIKDKNLEAKLAKALGGNKKDDDKEKS KSTA AK ESNK
Sbjct  1699  DNPIYASIEPDITKQYETEKTIKDKNLEAKLAKALGGNKKDDDKEKSKKSTAEAKVESNK  1758

Query  1623  IDKDVAETAKNISEIALKNKKEKSGDFVDENGNPIDDKKKAETQDETSPVKQAFIGKSDP  1682
             IDKDVAETAKNISEIALKNKKEK+G+FVDENGNPIDDKKKAE QDETSPVKQAFIGKSDP
Sbjct  1759  IDKDVAETAKNISEIALKNKKEKNGEFVDENGNPIDDKKKAEKQDETSPVKQAFIGKSDP  1818

Query  1683  TFVLAQYTPIEITLTSKVDATLTGIVSGVVAKDVWNMNGTMILLDKGTKVYGNYQSVKGG  1742
             TFVLAQYTPIEITLTSKVDATLTGIVSGVVAKDVWNMNGTMILLDKGTKVYGNYQSVKGG
Sbjct  1819  TFVLAQYTPIEITLTSKVDATLTGIVSGVVAKDVWNMNGTMILLDKGTKVYGNYQSVKGG  1878

Query  1743  TPIMTRLMIVFTKAITPDGVIIPLANAQAAGMLGEAGVDGYVNNHFMKRIGFAVIASVVN  1802
             TPIMTRLMIVFTKAITPDGVIIPLANAQAAGMLGEAGVDGYVNNHFMKRIGFAVIASVVN
Sbjct  1879  TPIMTRLMIVFTKAITPDGVIIPLANAQAAGMLGEAGVDGYVNNHFMKRIGFAVIASVVN  1938

Query  1803  SFLQTAPIIALDKLIGLGKGRSERTPEFNYALGQAINGSMQSSAQMSNQILGQLMNIPPS  1862
             SFLQTAPIIALDKLIGLGKGRSERTPEFNYALGQAINGSMQSSAQMSNQILGQLMNIPPS
Sbjct  1939  SFLQTAPIIALDKLIGLGKGRSERTPEFNYALGQAINGSMQSSAQMSNQILGQLMNIPPS  1998

Query  1863  FYKNEGDSIKILTMDDIDFSGVYDVKITNKSVVDEIIKQSTKTLSREHEEITTSPKGGN  1921
             FYKNEGDSIKILTMDDIDFSGVYDVKITNKSVVDEIIKQSTKTLSREHEEITTSPKGGN
Sbjct  1999  FYKNEGDSIKILTMDDIDFSGVYDVKITNKSVVDEIIKQSTKTLSREHEEITTSPKGGN  2057


 Score =  291 bits (1090),  Expect = 2e-79, Method: Compositional matrix adjust.
 Identities = 272/326 (84%), Positives = 291/326 (90%), Gaps = 6/326 (1%)

Query  1    MNEENDKLETSKKTQQHSPQDLSNEEATEANHFKDLLKEESSD--NHLENSTETQTNFDG  58
            MNEENDKLETSKKTQQHSPQDLSNEEATE NHF D  KE      +HL+N+TET+TNFDG
Sbjct  1    MNEENDKLETSKKTQQHSPQDLSNEEATEINHFEDSSKESKESSDHHLNNPTETKTNFDG  60

Query  59   DKLEETQTQMDsggnetsessngsLADKLFKKARKLVDNKRPFTQQKNLDEETQELNEEY  118
            DK EETQTQMDSGG+ETSESSNGSLADKLFKKARKLVDNKRPFTQQKNLDEETQELNEE 
Sbjct  61   DKSEETQTQMDSGGDETSESSNGSLADKLFKKARKLVDNKRPFTQQKNLDEETQELNEED  120

Query  119  DQENSEYQEETQTGLIDDETSKKTQQHSPQDLSNEEATEANHFKDLLKEESSDNH--LDN  176
            DQEN+ YQEETQTGLIDDETSKKTQQHSPQDLSNEEATE NHF D  KE    ++  LDN
Sbjct  121  DQENNGYQEETQTGLIDDETSKKTQQHSPQDLSNEEATEINHFEDSSKESKESSDPYLDN  180

Query  177  STETKSNFDGDKLEETQTQIDSGGNETSESSDGSLADKLFKKARKLVDNKRPFTQQKnld  236
            +TETK+NFDGDK EETQTQ+DSGG+ETSESS+GSLADKLFKKARKLVDNKRPFTQQKNLD
Sbjct  181  PTETKTNFDGDKSEETQTQMDSGGDETSESSNGSLADKLFKKARKLVDNKRPFTQQKNLD  240

Query  237  eetqelneeddqennGYQEETQTDLIDDETSKKTQQDSPQYSSNEEATEVNHFEDLLKEE  296
            EETQELNEEDDQENNGYQEETQT+LIDDETSKKTQQ+SPQ  SNEEATE+NHFED  KE 
Sbjct  241  EETQELNEEDDQENNGYQEETQTGLIDDETSKKTQQHSPQDLSNEEATEINHFEDSSKES  300

Query  297  SSDNH--LDNPTETQTNFDGDKSEEI  320
               ++  LDNPTET+TNFDGDKSEE 
Sbjct  301  KESSDPYLDNPTETKTNFDGDKSEET  326

2) HPKB_0815 in NC_017354


> JQ685140|1|G1|442739065|AGC69792.1|Helicobacter_pylori_J166_isolate_MJ166sc3|+|1..6174|cagY|-|cag 
pathogenicity island protein 
Y
Length=2057

 Score = 2121 bits (8060),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 1798/1920 (94%), Positives = 1845/1920 (97%), Gaps = 31/1920 (1%)

Query  9     ETSKKTQQHSPQDLSNEETTEANHFEDsskeskesPDHHLDNPTETKTNFDEYESEETQT  68
             ETSKKTQQHSPQDLSNEE+TE NHFEDSSKESKES+D  LDNPTETKTNFD   SEETQT
Sbjct  139   ETSKKTQQHSPQDLSNEEATEINHFEDSSKESKESSDPYLDNPTETKTNFDGDKSEETQT  198

Query  69    QMDFggnetsessngsLADKLFKKARKLVDDKRPFTQQKNLdeeiqepneeddqennGYQ  128
             QMD GG+ETSESSNGSLADKLFKKARKLVD+KRPFTQQKNLDEE QE NEEDDQENNGYQ
Sbjct  199   QMDSGGDETSESSNGSLADKLFKKARKLVDNKRPFTQQKNLDEETQELNEEDDQENNGYQ  258

Query  129   EETQMDLIDDETSKKTQQHSPQDLSNEETTEANHFEDsskeskesPDHHLDNPTETKTNF  188
             EETQ +LIDDETSKKTQQHSPQDLSNEE+TE NHFEDSSKESKES+D  LDNPTETKTNF
Sbjct  259   EETQTGLIDDETSKKTQQHSPQDLSNEEATEINHFEDSSKESKESSDPYLDNPTETKTNF  318

Query  189   DEYESEETQTQMDFggnetsessngsLADKLFKKARKLVDDKRPFTQQKNLdeeiqepne  248
             D   SEETQTQMD GG+ETSESSNGSLADKLFKKARKLVD+KRPFTQQKNLDEE QE NE
Sbjct  319   DGDKSEETQTQMDSGGDETSESSNGSLADKLFKKARKLVDNKRPFTQQKNLDEETQELNE  378

Query  249   eddqennGYQEETQMDLIDDETSKKTQQHSPQDLSNEETTEANHFEDsskeskesPDHHL  308
             EDDQENNGYQEETQ +LIDDETSKKTQQHSPQDLSNEE+TE NHFEDSSKESKES+D  L
Sbjct  379   EDDQENNGYQEETQTGLIDDETSKKTQQHSPQDLSNEEATEINHFEDSSKESKESSDPYL  438

Query  309   DNPTETKTNFDEYESEEITNDSNDQEiikgskkkyiiggivvavliviilFSRSIFHYFM  368
             DNPTETKTNFDE  SEEITNDSNDQEIIKGSKKKYIIGGIVVAVLIVIILFSRSIFHYFM
Sbjct  439   DNPTETKTNFDEDKSEEITNDSNDQEIIKGSKKKYIIGGIVVAVLIVIILFSRSIFHYFM  498

Query  369   PLEDKSSRFSKDRNLYVNDEIQIRQEYNQLLKERNEKGNMIDKNLFFNDDPNRTLYNYLN  428
             PLEDKSSRFSKDRNLYVNDEIQIRQEYN+LLKERNEKGNMIDKNLFFNDDPNRTLYNYLN
Sbjct  499   PLEDKSSRFSKDRNLYVNDEIQIRQEYNRLLKERNEKGNMIDKNLFFNDDPNRTLYNYLN  558

Query  429   IAEIEDKNPLRAFYECISNGGNYEEClklikdkklqdqmkktlEAYKDCIKNAKTEEERI  488
             IAEIEDKNPLRAFYECISNGGNYEECLKLIKDKKLQDQMKKTLEAY+DCIKNAKTEEERI
Sbjct  559   IAEIEDKNPLRAFYECISNGGNYEECLKLIKDKKLQDQMKKTLEAYNDCIKNAKTEEERI  618

Query  489   KCLDLIKDENLKKSLLNQQKVQVALDCLKNAKTDEERNECLKLINDPEIREKFRKELGLQ  548
             KCLDLIKDENLKKSLLNQQKVQVALDCLKNAKTDEER+ECLKLINDPEIREKFRKEL LQ
Sbjct  619   KCLDLIKDENLKKSLLNQQKVQVALDCLKNAKTDEERKECLKLINDPEIREKFRKELELQ  678

Query  549   KELQEYKDCIKNAKTEAEKNECLKGLSKEAIERLKQQALDCLKNAKTDEERNECLKNIPQ  608
             KELQEYKDCIKNAKTEAEKNECLKGLSKEAIERLKQQALDCLKNAKTDEERNECLKNIPQ
Sbjct  679   KELQEYKDCIKNAKTEAEKNECLKGLSKEAIERLKQQALDCLKNAKTDEERNECLKNIPQ  738

Query  609   DLQKELLADMSVKAYKDCVSRARNekekkecekLLTPEAKKKLEQQVLDCLKNAKTDEER  668
             DLQKELLADMSVKAYKDCVS+ARNEKEK+ECEKLLTPEA+KKLEQQVLDCLKNAKTDEER
Sbjct  739   DLQKELLADMSVKAYKDCVSKARNEKEKQECEKLLTPEARKKLEQQVLDCLKNAKTDEER  798

Query  669   KKCLKDLPKDLQSDILAKESVKAYKDCVSQakteaekkeceklltpeakklleeeakeSV  728
             KKCLKDLPKDLQSDILAKESVKAYKDCVSQAK EAEKKECEKLLTPEAKKLLEEEAKESV
Sbjct  799   KKCLKDLPKDLQSDILAKESVKAYKDCVSQAKNEAEKKECEKLLTPEAKKLLEEEAKESV  858

Query  729   KAYLDCVSQARTEAEKKECeklltpeakkkleeakksvkaYLDCVSQARTEAEKKECEKL  788
             KAYLDCVSQA+TEAEKKECEKLLTPEA+KKLEEAKKSVKAYLDCVSQA+ E EKKECEKL
Sbjct  859   KAYLDCVSQAKTEAEKKECEKLLTPEARKKLEEAKKSVKAYLDCVSQAKNEDEKKECEKL  918

Query  789   LTPEAKKLLEQQVLDCLKNAKTDEERKKCLKDLPKDLQKKVLAKESVKAYLDCVSQakte  848
             LTPEA+KLLEQQ LDCLKNAKTDEERKKCLKDLPKDLQKKVLAKESVKAYLDCVSQAKTE
Sbjct  919   LTPEARKLLEQQALDCLKNAKTDEERKKCLKDLPKDLQKKVLAKESVKAYLDCVSQAKTE  978

Query  849   aekkeceklltpeakklleeakeslkaYKDCVSRARNekekkeceklltpeakklleeea  908
             AEKKECEKLLTPEA+KLLEEAKES+KAYKDCVS+ARNEKEKKECEKLLTPEAKKLLEEEA
Sbjct  979   AEKKECEKLLTPEARKLLEEAKESIKAYKDCVSKARNEKEKKECEKLLTPEAKKLLEEEA  1038

Query  909   keSVKAYLDCVSQARTEAEKKECeklltpeakkkleeakksvkaYLDCVSQARTEAEKKE  968
             KESVKAYLDCVSQA+TEAEKKECEKLLTPEAKKKLEEAKKSVKAYLDCVSQA+ E EKKE
Sbjct  1039  KESVKAYLDCVSQAKTEAEKKECEKLLTPEAKKKLEEAKKSVKAYLDCVSQAKNEDEKKE  1098

Query  969   CEKLLTPEARKLLEQEV------------------------------KKSVKAYLDCVSR  998
             CEKLLTPEA+KLLEQ+                               K SVKAY DCVSR
Sbjct  1099  CEKLLTPEAKKLLEQQALDCLKNAKTEADKKRCVKDLPKDLQKKVLAKESVKAYKDCVSR  1158

Query  999   ARNEKERKACEKLLTPEARKKLEEAKKSVKAYLDCVSQARTEAEKKECEKLLTPEARKLL  1058
             ARNEKE+K CEKLLTPEA+K LEEAKKSVKAYLDCVSQA+TEAEKKECEKLLTPEA+KLL
Sbjct  1159  ARNEKEKKECEKLLTPEAKKLLEEAKKSVKAYLDCVSQAKTEAEKKECEKLLTPEAKKLL  1218

Query  1059  EQEVKKSVKAYLDCVSRARNEKEKQECEKLLTPEAKKFLEQQALDCLKNAKTETEKKRCV  1118
             E E K S+KAY DCVSRARNEKEK+ECEKLLTPEAKK+LEQQALDCLKNAKTE++KKRCV
Sbjct  1219  E-EAKESLKAYKDCVSRARNEKEKKECEKLLTPEAKKLLEQQALDCLKNAKTEADKKRCV  1277

Query  1119  KDLPKDLQKKVLAKESVKAYLDCVSRARNEKERKACeklltpeakklleeakeslkaYKD  1178
             KDLPKDLQKKVLAKESVKAYLDCVSRARNEKE+K CEKLLTPEAKKLLEEAKESLKAYKD
Sbjct  1278  KDLPKDLQKKVLAKESVKAYLDCVSRARNEKEKKECEKLLTPEAKKLLEEAKESLKAYKD  1337

Query  1179  CLSQARNEEERKACEKLLTPEARKLLEQEVKKSVKAYLDCVSRARNEKEKQECEKLLTPE  1238
             CLSQARNEEER+ACEKLLTPEARKLLEQEVKKSVKAYLDCVS+A+ E EK+ECEKLLTPE
Sbjct  1338  CLSQARNEEERRACEKLLTPEARKLLEQEVKKSVKAYLDCVSQAKTEAEKKECEKLLTPE  1397

Query  1239  ARKFLAKQVLNCLEKAGNEEERKACLKNLPKDLQENVLAKESLKAYKDCLSQARNEEERR  1298
             ARKFLAKQVLNCLEKAGNEEERKACLKNLPKDLQENVLAKESLKAYKDCLSQARNEEERR
Sbjct  1398  ARKFLAKQVLNCLEKAGNEEERKACLKNLPKDLQENVLAKESLKAYKDCLSQARNEEERR  1457

Query  1299  ACEKLLTPEARKLLEQEVKKSVKAYLDCVSRARNEKEKQECEKLLTPEARKFLAKELQQK  1358
             ACEKLLTPEARKLLEQEVKKSVKAYLDCVSRARNEKEK+ECEKLLTPEARKFLAKELQQK
Sbjct  1458  ACEKLLTPEARKLLEQEVKKSVKAYLDCVSRARNEKEKKECEKLLTPEARKFLAKELQQK  1517

Query  1359  DKAIKDCLKNADPNDRAAIMKCLDGLSDEEKLKYLQEAREKAVLDCLKTARTDEEKRKCQ  1418
             DKAIKDCLKNADPNDRAAIMKCLDGLSDEEKLKYLQEAREKAVLDCLKTARTDEEKRKCQ
Sbjct  1518  DKAIKDCLKNADPNDRAAIMKCLDGLSDEEKLKYLQEAREKAVLDCLKTARTDEEKRKCQ  1577

Query  1419  NLYSDLIQEIQNKRTQSKQNQLSKTERLHQASECLDNLDDPTDQEAIEQCLEGLSDSERA  1478
             NLYSDLIQEIQNKRTQSKQNQLSKTERLHQASECLDNLDDPTDQ+AIEQCLEGLSDSERA
Sbjct  1578  NLYSDLIQEIQNKRTQSKQNQLSKTERLHQASECLDNLDDPTDQQAIEQCLEGLSDSERA  1637

Query  1479  LILGIKRQADEVDLIYSDLRNRKTFDNMAAKGYPLLPMDFKNGGDIATINATNVDADKIA  1538
             LILGIKRQADEVD IYSDLRNRKTFDNMAAKGYPLLPMDFKNGGDIATINATNVDADKIA
Sbjct  1638  LILGIKRQADEVDRIYSDLRNRKTFDNMAAKGYPLLPMDFKNGGDIATINATNVDADKIA  1697

Query  1539  SDNPIYASIEPDITKQYETEKTIkdknleaklakalggnkkdddkekskkstaeskvesN  1598
             SDNPIYASIEPDITKQYETEKTIKDKNLEAKLAKALGGNKKDDDKEKSKKSTAE+KVESN
Sbjct  1698  SDNPIYASIEPDITKQYETEKTIKDKNLEAKLAKALGGNKKDDDKEKSKKSTAEAKVESN  1757

Query  1599  KIDKDVAETAKNISEIALKNKKEKSGEFVDENGNPIDDKKKAEKQDETSPVKQAFIGKSD  1658
             KIDKDVAETAKNISEIALKNKKEK+GEFVDENGNPIDDKKKAEKQDETSPVKQAFIGKSD
Sbjct  1758  KIDKDVAETAKNISEIALKNKKEKNGEFVDENGNPIDDKKKAEKQDETSPVKQAFIGKSD  1817

Query  1659  PTFVLAQYTPIEITLTSKVDATLTGIVSGVVAKDVWNMNGTMILLDKGTKVYGNYQSVKG  1718
             PTFVLAQYTPIEITLTSKVDATLTGIVSGVVAKDVWNMNGTMILLDKGTKVYGNYQSVKG
Sbjct  1818  PTFVLAQYTPIEITLTSKVDATLTGIVSGVVAKDVWNMNGTMILLDKGTKVYGNYQSVKG  1877

Query  1719  GTPIMTRLMIVFTKAITPDGVIIPLANAQAAGMLGEAGVDGYVNNHFMKRIGFAVIASVV  1778
             GTPIMTRLMIVFTKAITPDGVIIPLANAQAAGMLGEAGVDGYVNNHFMKRIGFAVIASVV
Sbjct  1878  GTPIMTRLMIVFTKAITPDGVIIPLANAQAAGMLGEAGVDGYVNNHFMKRIGFAVIASVV  1937

Query  1779  NSFLQTAPIIALDKLIGLGKGRSERTPEFNYALGQAINGSMQSSAQMSNQILGQLMNIPP  1838
             NSFLQTAPIIALDKLIGLGKGRSERTPEFNYALGQAINGSMQSSAQMSNQILGQLMNIPP
Sbjct  1938  NSFLQTAPIIALDKLIGLGKGRSERTPEFNYALGQAINGSMQSSAQMSNQILGQLMNIPP  1997

Query  1839  SFYKNEGDSIKILTMDDIDFSGVYDVKITNKSVVDEIIKQSTKTLSREHEEITTSPKGGN  1898
             SFYKNEGDSIKILTMDDIDFSGVYDVKITNKSVVDEIIKQSTKTLSREHEEITTSPKGGN
Sbjct  1998  SFYKNEGDSIKILTMDDIDFSGVYDVKITNKSVVDEIIKQSTKTLSREHEEITTSPKGGN  2057


 Score =  264 bits (986),  Expect = 3e-71, Method: Compositional matrix adjust.
 Identities = 287/326 (89%), Positives = 301/326 (93%), Gaps = 0/326 (0%)

Query  1    MNEENDKFETSKKTQQHSPQDLSNEETTEANHFEDsskeskesPDHHLDNPTETKTNFDE  60
            MNEENDK+ETSKKTQQHSPQDLSNEE+TE NHFEDSSKESKES+DHHL+NPTETKTNFD 
Sbjct  1    MNEENDKLETSKKTQQHSPQDLSNEEATEINHFEDSSKESKESSDHHLNNPTETKTNFDG  60

Query  61   YESEETQTQMDFggnetsessngsLADKLFKKARKLVDDKRPFTQQKNLdeeiqepneed  120
              SEETQTQMD GG+ETSESSNGSLADKLFKKARKLVD+KRPFTQQKNLDEE QE NEED
Sbjct  61   DKSEETQTQMDSGGDETSESSNGSLADKLFKKARKLVDNKRPFTQQKNLDEETQELNEED  120

Query  121  dqennGYQEETQMDLIDDETSKKTQQHSPQDLSNEETTEANHFEDsskeskesPDHHLDN  180
            DQENNGYQEETQ +LIDDETSKKTQQHSPQDLSNEE+TE NHFEDSSKESKES+D  LDN
Sbjct  121  DQENNGYQEETQTGLIDDETSKKTQQHSPQDLSNEEATEINHFEDSSKESKESSDPYLDN  180

Query  181  PTETKTNFDEYESEETQTQMDFggnetsessngsLADKLFKKARKLVDDKRPFTQQKNLd  240
            PTETKTNFD   SEETQTQMD GG+ETSESSNGSLADKLFKKARKLVD+KRPFTQQKNLD
Sbjct  181  PTETKTNFDGDKSEETQTQMDSGGDETSESSNGSLADKLFKKARKLVDNKRPFTQQKNLD  240

Query  241  eeiqepneeddqennGYQEETQMDLIDDETSKKTQQHSPQDLSNEETTEANHFEDsskes  300
            EE QE NEEDDQENNGYQEETQ +LIDDETSKKTQQHSPQDLSNEE+TE NHFEDSSKES
Sbjct  241  EETQELNEEDDQENNGYQEETQTGLIDDETSKKTQQHSPQDLSNEEATEINHFEDSSKES  300

Query  301  kesPDHHLDNPTETKTNFDEYESEEI  326
            KES+D  LDNPTETKTNFD   SEE 
Sbjct  301  KESSDPYLDNPTETKTNFDGDKSEET  326

3) cagY in NC_017365


> JQ685140|1|G1|442739065|AGC69792.1|Helicobacter_pylori_J166_isolate_MJ166sc3|+|1..6174|cagY|-|cag 
pathogenicity island protein 
Y
Length=2057

 Score = 2043 bits (7763),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 1817/1919 (95%), Positives = 1867/1919 (98%), Gaps = 1/1919 (0%)

Query  9     ETSKKTQQHSPQDLSNEEATEANhfedfskeskessdh-LDNPTETKTNFDEYESEETQT  67
             ETSKKTQQHSPQDLSNEEATE NHFED SKESKESSD  LDNPTETKTNFD   SEETQT
Sbjct  139   ETSKKTQQHSPQDLSNEEATEINHFEDSSKESKESSDPYLDNPTETKTNFDGDKSEETQT  198

Query  68    QMDFggnetsessngsLADKLFKKARKLVDNKKPFTQQKNLDEETQELNEEYDQENNGYQ  127
             QMD GG+ETSESSNGSLADKLFKKARKLVDNK+PFTQQKNLDEETQELNEE DQENNGYQ
Sbjct  199   QMDSGGDETSESSNGSLADKLFKKARKLVDNKRPFTQQKNLDEETQELNEEDDQENNGYQ  258

Query  128   EETQMDLIDDETSKKTQQYSPQDLSNEETTKANHFedsskesqessdHHLDNPTETKTNF  187
             EETQ +LIDDETSKKTQQ SPQDLSNEE+T  NHFEDSSKES+ESSD  LDNPTETKTNF
Sbjct  259   EETQTGLIDDETSKKTQQHSPQDLSNEEATEINHFEDSSKESKESSDPYLDNPTETKTNF  318

Query  188   DEYESEETQTQMDFggnetsessngsLADKLFKKARKLVDNKKPFTQQKNLDEETQELNE  247
             D   SEETQTQMD GG+ETSESSNGSLADKLFKKARKLVDNK+PFTQQKNLDEETQELNE
Sbjct  319   DGDKSEETQTQMDSGGDETSESSNGSLADKLFKKARKLVDNKRPFTQQKNLDEETQELNE  378

Query  248   EYDQENNGYQEETQMDLIDDETSKKTQQYSPQDLSNEETTKANHFedsskesqessdHHL  307
             E DQENNGYQEETQ +LIDDETSKKTQQ SPQDLSNEE+T  NHFEDSSKES+ESSD  L
Sbjct  379   EDDQENNGYQEETQTGLIDDETSKKTQQHSPQDLSNEEATEINHFEDSSKESKESSDPYL  438

Query  308   DNPTETKTNFDEYESEEITNDSNDQEiikgskkkyiiggivvavliviilFSRSIFHYFI  367
             DNPTETKTNFDE  SEEITNDSNDQEIIKGSKKKYIIGGIVVAVLIVIILFSRSIFHYF+
Sbjct  439   DNPTETKTNFDEDKSEEITNDSNDQEIIKGSKKKYIIGGIVVAVLIVIILFSRSIFHYFM  498

Query  368   PLEDKSSRFSKDRNLYVNDEIQIRQEYNRLLKERNEKGNMIDKNLFFNDDPNRTLYNYLN  427
             PLEDKSSRFSKDRNLYVNDEIQIRQEYNRLLKERNEKGNMIDKNLFFNDDPNRTLYNYLN
Sbjct  499   PLEDKSSRFSKDRNLYVNDEIQIRQEYNRLLKERNEKGNMIDKNLFFNDDPNRTLYNYLN  558

Query  428   IAEIEDKNPLRAFYECISNGGNYEEClklikdkklqdqmkktlEAYNDCIKNAKTEEERI  487
             IAEIEDKNPLRAFYECISNGGNYEECLKLIKDKKLQDQMKKTLEAYNDCIKNAKTEEERI
Sbjct  559   IAEIEDKNPLRAFYECISNGGNYEECLKLIKDKKLQDQMKKTLEAYNDCIKNAKTEEERI  618

Query  488   KCLDLIKDENLKKSLLNQQKVQVALDCLKNAKTDEERNECLKLINDPEIREKFRKELGLQ  547
             KCLDLIKDENLKKSLLNQQKVQVALDCLKNAKTDEER+ECLKLINDPEIREKFRKEL LQ
Sbjct  619   KCLDLIKDENLKKSLLNQQKVQVALDCLKNAKTDEERKECLKLINDPEIREKFRKELELQ  678

Query  548   KELQEYKDCIKNAKTEAEKNECLKGLSKEAIERLKQQALDCLKNAKTDEERKECLKNIPQ  607
             KELQEYKDCIKNAKTEAEKNECLKGLSKEAIERLKQQALDCLKNAKTDEER+ECLKNIPQ
Sbjct  679   KELQEYKDCIKNAKTEAEKNECLKGLSKEAIERLKQQALDCLKNAKTDEERNECLKNIPQ  738

Query  608   DLQKELLADMSVKAYKDCVSKARNekekkecekLLTPEAKKKLEQQVLDCLKNAKTDEER  667
             DLQKELLADMSVKAYKDCVSKARNEKEK+ECEKLLTPEA+KKLEQQVLDCLKNAKTDEER
Sbjct  739   DLQKELLADMSVKAYKDCVSKARNEKEKQECEKLLTPEARKKLEQQVLDCLKNAKTDEER  798

Query  668   KKCLKDLPKDLQSDILAKESLKAYKDCVSQakteaekkeceklltpeakklleeeakeSV  727
             KKCLKDLPKDLQSDILAKES+KAYKDCVSQAK EAEKKECEKLLTPEAKKLLEEEAKESV
Sbjct  799   KKCLKDLPKDLQSDILAKESVKAYKDCVSQAKNEAEKKECEKLLTPEAKKLLEEEAKESV  858

Query  728   KAYLDCVSQakteaekkeceklltpeakkkleeakksvkaYLDCVSQakteaekkecekl  787
             KAYLDCVSQAKTEAEKKECEKLLTPEA+KKLEEAKKSVKAYLDCVSQAK E EKKECEKL
Sbjct  859   KAYLDCVSQAKTEAEKKECEKLLTPEARKKLEEAKKSVKAYLDCVSQAKNEDEKKECEKL  918

Query  788   ltPEAKKLLEQQALDCLKNAKTDGERKKCLKDLPKDLQKKVLAKESLKAYKDCVSRARNe  847
             LTPEA+KLLEQQALDCLKNAKTD ERKKCLKDLPKDLQKKVLAKES+KAY DCVS+A+ E
Sbjct  919   LTPEARKLLEQQALDCLKNAKTDEERKKCLKDLPKDLQKKVLAKESVKAYLDCVSQAKTE  978

Query  848   kekkeceklltpeakklleeakeslkaYKDCVSQakteaekkeceklltpeakklleeea  907
              EKKECEKLLTPEA+KLLEEAKES+KAYKDCVS+A+ E EKKECEKLLTPEAKKLLEEEA
Sbjct  979   AEKKECEKLLTPEARKLLEEAKESIKAYKDCVSKARNEKEKKECEKLLTPEAKKLLEEEA  1038

Query  908   keSIKAYLDCVSQakteaekkeceklltpeakkkleeakksvkaYLDCVSQakteaekke  967
             KES+KAYLDCVSQAKTEAEKKECEKLLTPEAKKKLEEAKKSVKAYLDCVSQAK E EKKE
Sbjct  1039  KESVKAYLDCVSQAKTEAEKKECEKLLTPEAKKKLEEAKKSVKAYLDCVSQAKNEDEKKE  1098

Query  968   ceklltPEAKKLLEQQALDCLKNAKTDGERKKCLKDLPKDLQKKVLAKESLKAYKDCVSR  1027
             CEKLLTPEAKKLLEQQALDCLKNAKT++++K+C+KDLPKDLQKKVLAKES+KAYKDCVSR
Sbjct  1099  CEKLLTPEAKKLLEQQALDCLKNAKTEADKKRCVKDLPKDLQKKVLAKESVKAYKDCVSR  1158

Query  1028  ARNekekkeceklltpeakklleeakeslkaYKDCLSQARNEEERRACeklltpeakkll  1087
             ARNEKEKKECEKLLTPEAKKLLEEAK S+KAY DC+SQA+ E E++ CEKLLTPEAKKLL
Sbjct  1159  ARNEKEKKECEKLLTPEAKKLLEEAKKSVKAYLDCVSQAKTEAEKKECEKLLTPEAKKLL  1218

Query  1088  eeakeslkaYKDCVSRARNEKEKQECEKLLTPEAKKLLEQQALDCLKNAKTEAEKKRCAK  1147
             EEAKESLKAYKDCVSRARNEKEK+ECEKLLTPEAKKLLEQQALDCLKNAKTEA+KKRC K
Sbjct  1219  EEAKESLKAYKDCVSRARNEKEKKECEKLLTPEAKKLLEQQALDCLKNAKTEADKKRCVK  1278

Query  1148  DLPKDLQKKVLAKESVKAYLDCVSRARNEKDKKECeklltpeakklleeakeslkaYKDC  1207
             DLPKDLQKKVLAKESVKAYLDCVSRARNEK+KKECEKLLTPEAKKLLEEAKESLKAYKDC
Sbjct  1279  DLPKDLQKKVLAKESVKAYLDCVSRARNEKEKKECEKLLTPEAKKLLEEAKESLKAYKDC  1338

Query  1208  LSQARNEEERRACEKLLTPEARKLLEQEVKKSVKAYLDCVSRARNEKEKQECEKLLTPEA  1267
             LSQARNEEERRACEKLLTPEARKLLEQEVKKSVKAYLDCVS+A+ E EK+ECEKLLTPEA
Sbjct  1339  LSQARNEEERRACEKLLTPEARKLLEQEVKKSVKAYLDCVSQAKTEAEKKECEKLLTPEA  1398

Query  1268  RKFLAKQVLNCLEKARNEEERKACLKNIPKDLQKNVLAKESLKAYKDCLSQARNEEERRA  1327
             RKFLAKQVLNCLEKA NEEERKACLKN+PKDLQ NVLAKESLKAYKDCLSQARNEEERRA
Sbjct  1399  RKFLAKQVLNCLEKAGNEEERKACLKNLPKDLQENVLAKESLKAYKDCLSQARNEEERRA  1458

Query  1328  CEKLLTPEARKLLEQEVKKSVKAYLDCVSRARNEKEKQECEKLLTPEARKFLAKELQQKD  1387
             CEKLLTPEARKLLEQEVKKSVKAYLDCVSRARNEKEK+ECEKLLTPEARKFLAKELQQKD
Sbjct  1459  CEKLLTPEARKLLEQEVKKSVKAYLDCVSRARNEKEKKECEKLLTPEARKFLAKELQQKD  1518

Query  1388  KAIKDCLKNADPNDRAAIMKCLDGLSDEEKLKYLQEAREKAVLDCLKTARTDEEKRKCQN  1447
             KAIKDCLKNADPNDRAAIMKCLDGLSDEEKLKYLQEAREKAVLDCLKTARTDEEKRKCQN
Sbjct  1519  KAIKDCLKNADPNDRAAIMKCLDGLSDEEKLKYLQEAREKAVLDCLKTARTDEEKRKCQN  1578

Query  1448  LYSDLIQEIQNKRTQSKQNQLSKTERLHQASECLDNLDDPTDQEAIEQCLEGLSDSERAL  1507
             LYSDLIQEIQNKRTQSKQNQLSKTERLHQASECLDNLDDPTDQ+AIEQCLEGLSDSERAL
Sbjct  1579  LYSDLIQEIQNKRTQSKQNQLSKTERLHQASECLDNLDDPTDQQAIEQCLEGLSDSERAL  1638

Query  1508  ILGIKRQADEVDLIYSDLRNRKTFDNMAAKGYPLLPMDFKNGGDIATINATNVDADKIAS  1567
             ILGIKRQADEVD IYSDLRNRKTFDNMAAKGYPLLPMDFKNGGDIATINATNVDADKIAS
Sbjct  1639  ILGIKRQADEVDRIYSDLRNRKTFDNMAAKGYPLLPMDFKNGGDIATINATNVDADKIAS  1698

Query  1568  DNPIYASIEPDITKQYETEKTIkdknleaklakalggnkkdddkekskksTAEARVESNK  1627
             DNPIYASIEPDITKQYETEKTIKDKNLEAKLAKALGGNKKDDDKEKSKKSTAEA+VESNK
Sbjct  1699  DNPIYASIEPDITKQYETEKTIKDKNLEAKLAKALGGNKKDDDKEKSKKSTAEAKVESNK  1758

Query  1628  IDKDVAETAKNISEIALKNKKEKSGEFVDENGNPIDDKKKTETQDETSPVKQAFIGKSDP  1687
             IDKDVAETAKNISEIALKNKKEK+GEFVDENGNPIDDKKK+E QDETSPVKQAFIGKSDP
Sbjct  1759  IDKDVAETAKNISEIALKNKKEKNGEFVDENGNPIDDKKKAEKQDETSPVKQAFIGKSDP  1818

Query  1688  TFVLAQYTPIEITLTSKVDATLTGIVSGVVAKDVWNMNGTMILLDKGTKVYGNYQSVKGG  1747
             TFVLAQYTPIEITLTSKVDATLTGIVSGVVAKDVWNMNGTMILLDKGTKVYGNYQSVKGG
Sbjct  1819  TFVLAQYTPIEITLTSKVDATLTGIVSGVVAKDVWNMNGTMILLDKGTKVYGNYQSVKGG  1878

Query  1748  TPIMTRLMIVFTKAITPDGVIIPLANAQAAGMLGEAGVDGYVNNHFMKRIGFAVIASVVN  1807
             TPIMTRLMIVFTKAITPDGVIIPLANAQAAGMLGEAGVDGYVNNHFMKRIGFAVIASVVN
Sbjct  1879  TPIMTRLMIVFTKAITPDGVIIPLANAQAAGMLGEAGVDGYVNNHFMKRIGFAVIASVVN  1938

Query  1808  SFLQTAPIIALDKLIGLGKGRSERTPEFNYALGQAINGSMQSSAQMSNQILGQLMNIPPS  1867
             SFLQTAPIIALDKLIGLGKGRSERTPEFNYALGQAINGSMQSSAQMSNQILGQLMNIPPS
Sbjct  1939  SFLQTAPIIALDKLIGLGKGRSERTPEFNYALGQAINGSMQSSAQMSNQILGQLMNIPPS  1998

Query  1868  FYKNEGDSIKILTMDDIDFSGVYDVKITNKSVVDEIIKQSTKTLSREHEEITTSPKGGN  1926
             FYKNEGDSIKILTMDDIDFSGVYDVKITNKSVVDEIIKQSTKTLSREHEEITTSPKGGN
Sbjct  1999  FYKNEGDSIKILTMDDIDFSGVYDVKITNKSVVDEIIKQSTKTLSREHEEITTSPKGGN  2057


 Score =  277 bits (1035),  Expect = 5e-75, Method: Compositional matrix adjust.
 Identities = 275/326 (85%), Positives = 288/326 (89%), Gaps = 1/326 (0%)

Query  1    MNEENDKLETSKKTQQHSPQDLSNEEATEANh-fedfskeskessdhLDNPTETKTNFDE  59
            MNEENDKLETSKKTQQHSPQDLSNEEATE NH  +        S +HL+NPTETKTNFD 
Sbjct  1    MNEENDKLETSKKTQQHSPQDLSNEEATEINHFEDSSKESKESSDHHLNNPTETKTNFDG  60

Query  60   YESEETQTQMDFggnetsessngsLADKLFKKARKLVDNKKPFTQQKNLDEETQELNEEY  119
              SEETQTQMD GG+ETSESSNGSLADKLFKKARKLVDNK+PFTQQKNLDEETQELNEE 
Sbjct  61   DKSEETQTQMDSGGDETSESSNGSLADKLFKKARKLVDNKRPFTQQKNLDEETQELNEED  120

Query  120  DQENNGYQEETQMDLIDDETSKKTQQYSPQDLSNEETTKANHFedsskesqessdHHLDN  179
            DQENNGYQEETQ +LIDDETSKKTQQ SPQDLSNEE+T  NHFEDSSKES+ESSD  LDN
Sbjct  121  DQENNGYQEETQTGLIDDETSKKTQQHSPQDLSNEEATEINHFEDSSKESKESSDPYLDN  180

Query  180  PTETKTNFDEYESEETQTQMDFggnetsessngsLADKLFKKARKLVDNKKPFTQQKNLD  239
            PTETKTNFD   SEETQTQMD GG+ETSESSNGSLADKLFKKARKLVDNK+PFTQQKNLD
Sbjct  181  PTETKTNFDGDKSEETQTQMDSGGDETSESSNGSLADKLFKKARKLVDNKRPFTQQKNLD  240

Query  240  EETQELNEEYDQENNGYQEETQMDLIDDETSKKTQQYSPQDLSNEETTKANHFedsskes  299
            EETQELNEE DQENNGYQEETQ +LIDDETSKKTQQ SPQDLSNEE+T  NHFEDSSKES
Sbjct  241  EETQELNEEDDQENNGYQEETQTGLIDDETSKKTQQHSPQDLSNEEATEINHFEDSSKES  300

Query  300  qessdHHLDNPTETKTNFDEYESEEI  325
            +ESSD  LDNPTETKTNFD   SEE 
Sbjct  301  KESSDPYLDNPTETKTNFDGDKSEET  326

4) HPLT_02610 in NC_017362


> JQ685140|1|G1|442739065|AGC69792.1|Helicobacter_pylori_J166_isolate_MJ166sc3|+|1..6174|cagY|-|cag 
pathogenicity island protein 
Y
Length=2057

 Score = 2037 bits (7739),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 1810/1919 (95%), Positives = 1869/1919 (98%), Gaps = 6/1919 (0%)

Query  9     ETSKKTQQDSPQDLSNEEATEVNHFEDLLKEESSDNH--LDNPTETKTHFDGDKSEETQT  66
             ETSKKTQQ+SPQDLSNEEATE+NHFED  KE    ++  LDNPTETKT+FDGDKSEETQT
Sbjct  139   ETSKKTQQHSPQDLSNEEATEINHFEDSSKESKESSDPYLDNPTETKTNFDGDKSEETQT  198

Query  67    QIDsegnetsessngsLADKLFKKARKLVDDKRPFTQQKSLDEEAQKLneeddqenneyq  126
             Q+DS G+ETSESSNGSLADKLFKKARKLVD+KRPFTQQK+LDEE+Q LNEEDDQENN YQ
Sbjct  199   QMDSGGDETSESSNGSLADKLFKKARKLVDNKRPFTQQKNLDEETQELNEEDDQENNGYQ  258

Query  127   eeTQIDLIDDETSKKTQQHSPQDLSNEEATEVNHFEDLLKEESSNNH--LDNPTETKTHF  184
             EETQ +LIDDETSKKTQQHSPQDLSNEEATE+NHFED  KE   +++  LDNPTETKT+F
Sbjct  259   EETQTGLIDDETSKKTQQHSPQDLSNEEATEINHFEDSSKESKESSDPYLDNPTETKTNF  318

Query  185   DGDKSEETQTQIDsegnetsessngsLADKLFKKARKLVDDKRPFTQQKSLDEEAQKLne  244
             DGDKSEETQTQ+DS G+ETSESSNGSLADKLFKKARKLVD+KRPFTQQK+LDEE+Q LNE
Sbjct  319   DGDKSEETQTQMDSGGDETSESSNGSLADKLFKKARKLVDNKRPFTQQKNLDEETQELNE  378

Query  245   eddqenneyqedtqIDLIDDETSKKTQQHSPQDLSNEEATEVNHFEDLLKEESSDNH--L  302
             EDDQENN YQE+TQ +LIDDETSKKTQQHSPQDLSNEEATE+NHFED  KE    ++  L
Sbjct  379   EDDQENNGYQEETQTGLIDDETSKKTQQHSPQDLSNEEATEINHFEDSSKESKESSDPYL  438

Query  303   DNPTETKTHFDGDKSEEITNDSNDQEiikgskkkyiiggivvavliviilFSRSIFHYFM  362
             DNPTETKT+FD DKSEEITNDSNDQEIIKGSKKKYIIGGIVVAVLIVIILFSRSIFHYFM
Sbjct  439   DNPTETKTNFDEDKSEEITNDSNDQEIIKGSKKKYIIGGIVVAVLIVIILFSRSIFHYFM  498

Query  363   PLEDKSSRFSKDRNLYVNDEIQIRQEYNRLLKERNEKGNMIDKNLFFNDDPNRTLYNYLN  422
             PLEDKSSRFSKDRNLYVNDEIQIRQEYNRLLKERNEKGNMIDKNLFFNDDPNRTLYNYLN
Sbjct  499   PLEDKSSRFSKDRNLYVNDEIQIRQEYNRLLKERNEKGNMIDKNLFFNDDPNRTLYNYLN  558

Query  423   IAEIEDKNPLRAFYECIGNGGNYEECLKLIKDKKLQEQMKKTLEAYNDCIKNAKTEEERI  482
             IAEIEDKNPLRAFYECI+NGGNYEECLKLIKDKKLQ+QMKKTLEAYNDCIKNAKTEEERI
Sbjct  559   IAEIEDKNPLRAFYECISNGGNYEECLKLIKDKKLQDQMKKTLEAYNDCIKNAKTEEERI  618

Query  483   KCLDLIKDENLKKSLLNQQKVQVALDCLKNAKTDEERNECLKLINDPEIrekfrkelelq  542
             KCLDLIKDENLKKSLLNQQKVQVALDCLKNAKTDEER+ECLKLINDPEIREKFRKELELQ
Sbjct  619   KCLDLIKDENLKKSLLNQQKVQVALDCLKNAKTDEERKECLKLINDPEIREKFRKELELQ  678

Query  543   kelqeYKDCIKNAKTEAEKNECLKGLSKEAIERLKQQALDCLKNAKTDEERNECLKNIPQ  602
             KELQEYKDCIKNAKTEAEKNECLKGLSKEAIERLKQQALDCLKNAKTDEERNECLKNIPQ
Sbjct  679   KELQEYKDCIKNAKTEAEKNECLKGLSKEAIERLKQQALDCLKNAKTDEERNECLKNIPQ  738

Query  603   DLQKELLADMSVKAYKDCVSKARNekekkecekLLTPEARKKLEQQVLDCLKNAKTDEER  662
             DLQKELLADMSVKAYKDCVSKARNEKEK+ECEKLLTPEARKKLEQQVLDCLKNAKTDEER
Sbjct  739   DLQKELLADMSVKAYKDCVSKARNEKEKQECEKLLTPEARKKLEQQVLDCLKNAKTDEER  798

Query  663   KKCLKDLPKDLQSDILAKESLKAYKDCVSRakneaekkeceklltpeakklleeeakeSV  722
             KKCLKDLPKDLQSDILAKES+KAYKDCVS+AKNEAEKKECEKLLTPEAKKLLEEEAKESV
Sbjct  799   KKCLKDLPKDLQSDILAKESVKAYKDCVSQAKNEAEKKECEKLLTPEAKKLLEEEAKESV  858

Query  723   KAYLDCVSQAktetekkeceklltpeakkkleeakksvkaYLDCVSQakteaekkecekl  782
             KAYLDCVSQAKTE+EKKECEKLLTPEA+KKLEEAKKSVKAYLDCVSQAK E EKKECEKL
Sbjct  859   KAYLDCVSQAKTEAEKKECEKLLTPEARKKLEEAKKSVKAYLDCVSQAKNEDEKKECEKL  918

Query  783   ltPEAKKLLEQQALDCLKNAKTEADKKRCVKDLPKDLQKKVLAKESVKAYLDCVSQakte  842
             LTPEA+KLLEQQALDCLKNAKT+ ++K+C+KDLPKDLQKKVLAKESVKAYLDCVSQAKTE
Sbjct  919   LTPEARKLLEQQALDCLKNAKTDEERKKCLKDLPKDLQKKVLAKESVKAYLDCVSQAKTE  978

Query  843   aekkeceklltPEARKLLEEAKESLKAYKDCVSRakneaekkeceklltpeakklleeea  902
             AEKKECEKLLTPEARKLLEEAKES+KAYKDCVS+A+NE EKKECEKLLTPEAKKLLEEEA
Sbjct  979   AEKKECEKLLTPEARKLLEEAKESIKAYKDCVSKARNEKEKKECEKLLTPEAKKLLEEEA  1038

Query  903   keSVNAYLDCVSQAktetekkeceklltpeakkkleeakksvkaYLDCVSQakteaekke  962
             KESV+AYLDCVSQAKTE+EKKECEKLLTPEAKKKLEEAKKSVKAYLDCVSQAK E EKKE
Sbjct  1039  KESVKAYLDCVSQAKTEAEKKECEKLLTPEAKKKLEEAKKSVKAYLDCVSQAKNEDEKKE  1098

Query  963   ceklltPEAKKLLEQQALDCLKNAKTEAEKKRCVKDLPKDLQKKVLAKESVKAYLDCVSQ  1022
             CEKLLTPEAKKLLEQQALDCLKNAKTEA+KKRCVKDLPKDLQKKVLAKESVKAY DCVS+
Sbjct  1099  CEKLLTPEAKKLLEQQALDCLKNAKTEADKKRCVKDLPKDLQKKVLAKESVKAYKDCVSR  1158

Query  1023  akteaekkeceklltPEARKLLEEAKESLKAYKDCVSRakneaekkeceklltpeakkll  1082
             A+ E EKKECEKLLTPEA+KLLEEAK S+KAY DCVS+AK EAEKKECEKLLTPEAKKLL
Sbjct  1159  ARNEKEKKECEKLLTPEAKKLLEEAKKSVKAYLDCVSQAKTEAEKKECEKLLTPEAKKLL  1218

Query  1083  eeakesvkaYKDCVSRARNekekkecekLLTPEAKKLLEQQALDCLKNAKTEAEKKRCVK  1142
             EEAKES+KAYKDCVSRARNEKEKKECEKLLTPEAKKLLEQQALDCLKNAKTEA+KKRCVK
Sbjct  1219  EEAKESLKAYKDCVSRARNEKEKKECEKLLTPEAKKLLEQQALDCLKNAKTEADKKRCVK  1278

Query  1143  DLPKDLQKKVLAKESVKAYLDCVSRARNekekkeceklltpeakklleeakeslkaYKDC  1202
             DLPKDLQKKVLAKESVKAYLDCVSRARNEKEKKECEKLLTPEAKKLLEEAKESLKAYKDC
Sbjct  1279  DLPKDLQKKVLAKESVKAYLDCVSRARNEKEKKECEKLLTPEAKKLLEEAKESLKAYKDC  1338

Query  1203  LSQARNEEERRACEKLLTPEARKLLEQEVKKSVKAYLDCVSRARNekekkecekLLTPEA  1262
             LSQARNEEERRACEKLLTPEARKLLEQEVKKSVKAYLDCVS+A+ E EKKECEKLLTPEA
Sbjct  1339  LSQARNEEERRACEKLLTPEARKLLEQEVKKSVKAYLDCVSQAKTEAEKKECEKLLTPEA  1398

Query  1263  RKFLAKQVLNCLEKAGNEEERKACLKNLPKDLQENVLAKESLKAYKDCLSQARNEEERRA  1322
             RKFLAKQVLNCLEKAGNEEERKACLKNLPKDLQENVLAKESLKAYKDCLSQARNEEERRA
Sbjct  1399  RKFLAKQVLNCLEKAGNEEERKACLKNLPKDLQENVLAKESLKAYKDCLSQARNEEERRA  1458

Query  1323  CEKLLTPEARKLLEQEVKKSVKAYLDCVSRARNEKEKQECEKLLTPEARKFLAKELQQKD  1382
             CEKLLTPEARKLLEQEVKKSVKAYLDCVSRARNEKEK+ECEKLLTPEARKFLAKELQQKD
Sbjct  1459  CEKLLTPEARKLLEQEVKKSVKAYLDCVSRARNEKEKKECEKLLTPEARKFLAKELQQKD  1518

Query  1383  KAIKDCLKNADPNDRAAIMKCLDGLSDEEKLKYLQEAREKAVLDCLKTARTDEEKRKCQN  1442
             KAIKDCLKNADPNDRAAIMKCLDGLSDEEKLKYLQEAREKAVLDCLKTARTDEEKRKCQN
Sbjct  1519  KAIKDCLKNADPNDRAAIMKCLDGLSDEEKLKYLQEAREKAVLDCLKTARTDEEKRKCQN  1578

Query  1443  LYSDLIQEIQNKRTQNKQNQLSKTERLHQASECLDNLDDPTDQQAIEQCLEGLSDSERAL  1502
             LYSDLIQEIQNKRTQ+KQNQLSKTERLHQASECLDNLDDPTDQQAIEQCLEGLSDSERAL
Sbjct  1579  LYSDLIQEIQNKRTQSKQNQLSKTERLHQASECLDNLDDPTDQQAIEQCLEGLSDSERAL  1638

Query  1503  ILGIKRQADEVDLIYSELRNRKTFDNMAAKGYPLLPMDFKNGGDIATINATNVDADKIAS  1562
             ILGIKRQADEVD IYS+LRNRKTFDNMAAKGYPLLPMDFKNGGDIATINATNVDADKIAS
Sbjct  1639  ILGIKRQADEVDRIYSDLRNRKTFDNMAAKGYPLLPMDFKNGGDIATINATNVDADKIAS  1698

Query  1563  DNPIYASIEPDITKQYETEKTIkdknleaklakalggnkkdddkekskkstakakaesnk  1622
             DNPIYASIEPDITKQYETEKTIKDKNLEAKLAKALGGNKKDDDKEKSKKSTA AK ESNK
Sbjct  1699  DNPIYASIEPDITKQYETEKTIKDKNLEAKLAKALGGNKKDDDKEKSKKSTAEAKVESNK  1758

Query  1623  IDKDVAETAKNISEIALKNKKEKNGEFVDENGNPIddkkkeekqdeTSPVKQAFIGKSDP  1682
             IDKDVAETAKNISEIALKNKKEKNGEFVDENGNPIDDKKK EKQDETSPVKQAFIGKSDP
Sbjct  1759  IDKDVAETAKNISEIALKNKKEKNGEFVDENGNPIDDKKKAEKQDETSPVKQAFIGKSDP  1818

Query  1683  TFVLAQYTPIEITLTSKVDATLTGIVSGVVAKDVWNMNGTMILLDKGTKVYGNYQSVKGG  1742
             TFVLAQYTPIEITLTSKVDATLTGIVSGVVAKDVWNMNGTMILLDKGTKVYGNYQSVKGG
Sbjct  1819  TFVLAQYTPIEITLTSKVDATLTGIVSGVVAKDVWNMNGTMILLDKGTKVYGNYQSVKGG  1878

Query  1743  TPIMTRLMIVFTKAITPDGVIIPLANAQAAGMLGEAGVDGYVNNHFMKRIGFAVIASVVN  1802
             TPIMTRLMIVFTKAITPDGVIIPLANAQAAGMLGEAGVDGYVNNHFMKRIGFAVIASVVN
Sbjct  1879  TPIMTRLMIVFTKAITPDGVIIPLANAQAAGMLGEAGVDGYVNNHFMKRIGFAVIASVVN  1938

Query  1803  SFLQTAPIIALDKLIGLGKGRSERTPEFNYALGQAINGSMQSSAQMSNQILGQLMNIPPS  1862
             SFLQTAPIIALDKLIGLGKGRSERTPEFNYALGQAINGSMQSSAQMSNQILGQLMNIPPS
Sbjct  1939  SFLQTAPIIALDKLIGLGKGRSERTPEFNYALGQAINGSMQSSAQMSNQILGQLMNIPPS  1998

Query  1863  FYKNEGDSIKILTMDDIDFSGVYDVKITNKSVVDEIIKQSTKTLSREHEEITTSPKGGN  1921
             FYKNEGDSIKILTMDDIDFSGVYDVKITNKSVVDEIIKQSTKTLSREHEEITTSPKGGN
Sbjct  1999  FYKNEGDSIKILTMDDIDFSGVYDVKITNKSVVDEIIKQSTKTLSREHEEITTSPKGGN  2057


 Score =  267 bits (1000),  Expect = 3e-72, Method: Compositional matrix adjust.
 Identities = 267/329 (82%), Positives = 295/329 (90%), Gaps = 6/329 (1%)

Query  1    MNEENDKLETSKKTQQDSPQDLSNEEATEVNHFEDLLKEESSD--NHLDNPTETKTHFDG  58
            MNEENDKLETSKKTQQ+SPQDLSNEEATE+NHFED  KE      +HL+NPTETKT+FDG
Sbjct  1    MNEENDKLETSKKTQQHSPQDLSNEEATEINHFEDSSKESKESSDHHLNNPTETKTNFDG  60

Query  59   DKSEETQTQIDsegnetsessngsLADKLFKKARKLVDDKRPFTQQKSLDEEAQKLneed  118
            DKSEETQTQ+DS G+ETSESSNGSLADKLFKKARKLVD+KRPFTQQK+LDEE+Q LNEED
Sbjct  61   DKSEETQTQMDSGGDETSESSNGSLADKLFKKARKLVDNKRPFTQQKNLDEETQELNEED  120

Query  119  dqenneyqeeTQIDLIDDETSKKTQQHSPQDLSNEEATEVNHFEDLLKEESSNNH--LDN  176
            DQENN YQEETQ +LIDDETSKKTQQHSPQDLSNEEATE+NHFED  KE   +++  LDN
Sbjct  121  DQENNGYQEETQTGLIDDETSKKTQQHSPQDLSNEEATEINHFEDSSKESKESSDPYLDN  180

Query  177  PTETKTHFDGDKSEETQTQIDsegnetsessngsLADKLFKKARKLVDDKRPFTQQKSLD  236
            PTETKT+FDGDKSEETQTQ+DS G+ETSESSNGSLADKLFKKARKLVD+KRPFTQQK+LD
Sbjct  181  PTETKTNFDGDKSEETQTQMDSGGDETSESSNGSLADKLFKKARKLVDNKRPFTQQKNLD  240

Query  237  EEAQKLneeddqenneyqedtqIDLIDDETSKKTQQHSPQDLSNEEATEVNHFEDLLKEE  296
            EE+Q LNEEDDQENN YQE+TQ +LIDDETSKKTQQHSPQDLSNEEATE+NHFED  KE 
Sbjct  241  EETQELNEEDDQENNGYQEETQTGLIDDETSKKTQQHSPQDLSNEEATEINHFEDSSKES  300

Query  297  SSDNH--LDNPTETKTHFDGDKSEEITND  323
               ++  LDNPTETKT+FDGDKSEE   +
Sbjct  301  KESSDPYLDNPTETKTNFDGDKSEETQTQ  329

5) C694_02720 in NC_018939


> JQ685140|1|G1|442739065|AGC69792.1|Helicobacter_pylori_J166_isolate_MJ166sc3|+|1..6174|cagY|-|cag 
pathogenicity island protein 
Y
Length=2057

 Score = 2026 bits (7699),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 1836/1919 (96%), Positives = 1878/1919 (98%), Gaps = 0/1919 (0%)

Query  9     ETSKKAQQDSPQDLSNEEATEANHFENLLKESKESSDHHLDNPTETQTHFDGDKSEETQT  68
             ETSKK+QQ+SPQDLSNEEATE NHFE+  KESKESSD  LDNPTET+T+FDGDKSEETQT
Sbjct  139   ETSKKTQQHSPQDLSNEEATEINHFEDSSKESKESSDPYLDNPTETKTNFDGDKSEETQT  198

Query  69    QMDsegnetsessngsLADKLFKKARKLVDNKKPFTQQKnldeetqelneeddqenneyq  128
             QMDS G+ETSESSNGSLADKLFKKARKLVDNK+PFTQQKNLDEETQELNEEDDQENN YQ
Sbjct  199   QMDSGGDETSESSNGSLADKLFKKARKLVDNKRPFTQQKNLDEETQELNEEDDQENNGYQ  258

Query  129   eetqtdLIDDETSKKTQQHSPQDLSNEEATEANHFENLLKESKESSDHHLDNPTETQTNF  188
             EETQT+LIDDETSKKTQQHSPQDLSNEEATE NHFE+  KESKESSD  LDNPTET+TNF
Sbjct  259   EETQTGLIDDETSKKTQQHSPQDLSNEEATEINHFEDSSKESKESSDPYLDNPTETKTNF  318

Query  189   DGDKSEETQTQMDsegnetsessngsLADKLFKKARKLVDNKKPFTQQKnldeetqelne  248
             DGDKSEETQTQMDS G+ETSESSNGSLADKLFKKARKLVDNK+PFTQQKNLDEETQELNE
Sbjct  319   DGDKSEETQTQMDSGGDETSESSNGSLADKLFKKARKLVDNKRPFTQQKNLDEETQELNE  378

Query  249   eddqenneyqeetqtdLIDDETSKKTQQHSPQDLSNEEATEANHFENLLKESKESSDHHL  308
             EDDQENN YQEETQT+LIDDETSKKTQQHSPQDLSNEEATE NHFE+  KESKESSD  L
Sbjct  379   EDDQENNGYQEETQTGLIDDETSKKTQQHSPQDLSNEEATEINHFEDSSKESKESSDPYL  438

Query  309   DNPTETQTNFDGDKSEEITDDSNDQEiikgskkkyiiggivvavliviilFSRSIFHYFM  368
             DNPTET+TNFD DKSEEIT+DSNDQEIIKGSKKKYIIGGIVVAVLIVIILFSRSIFHYFM
Sbjct  439   DNPTETKTNFDEDKSEEITNDSNDQEIIKGSKKKYIIGGIVVAVLIVIILFSRSIFHYFM  498

Query  369   PLEDKSSRFSKDRNLYVNDEIQIRQEYNRLLKERNEKGNMIDKNLFFNDDPNRTLYNYLN  428
             PLEDKSSRFSKDRNLYVNDEIQIRQEYNRLLKERNEKGNMIDKNLFFNDDPNRTLYNYLN
Sbjct  499   PLEDKSSRFSKDRNLYVNDEIQIRQEYNRLLKERNEKGNMIDKNLFFNDDPNRTLYNYLN  558

Query  429   IAEIEDKNPLRAFYECISNGGNYEEClklikdkklqdqmkktlEAYNDCIKNAKTEEERI  488
             IAEIEDKNPLRAFYECISNGGNYEECLKLIKDKKLQDQMKKTLEAYNDCIKNAKTEEERI
Sbjct  559   IAEIEDKNPLRAFYECISNGGNYEECLKLIKDKKLQDQMKKTLEAYNDCIKNAKTEEERI  618

Query  489   KCLDLIKDENLKKSLLNQQKVQVALDCLKNAKTDEERNECLKLINDPEIrekfrkelelq  548
             KCLDLIKDENLKKSLLNQQKVQVALDCLKNAKTDEER+ECLKLINDPEIREKFRKELELQ
Sbjct  619   KCLDLIKDENLKKSLLNQQKVQVALDCLKNAKTDEERKECLKLINDPEIREKFRKELELQ  678

Query  549   kelqeYKDCIKNAKTEAEKNKCLKGLSKEAIERLKQQALDCLKNAKTDEERNECLKNIPQ  608
             KELQEYKDCIKNAKTEAEKN CLKGLSKEAIERLKQQALDCLKNAKTDEERNECLKNIPQ
Sbjct  679   KELQEYKDCIKNAKTEAEKNECLKGLSKEAIERLKQQALDCLKNAKTDEERNECLKNIPQ  738

Query  609   DLQKELLADMSVKAYKDCVSKARNEKEKQECEKLLTPEARKKLEQQVLDCLKNAKTDEER  668
             DLQKELLADMSVKAYKDCVSKARNEKEKQECEKLLTPEARKKLEQQVLDCLKNAKTDEER
Sbjct  739   DLQKELLADMSVKAYKDCVSKARNEKEKQECEKLLTPEARKKLEQQVLDCLKNAKTDEER  798

Query  669   KKCLKDLPKDLQSDILAKESLKAYKDCVSQakteaekkeceklltpeakklleeeakeSV  728
             KKCLKDLPKDLQSDILAKES+KAYKDCVSQAK EAEKKECEKLLTPEAKKLLEEEAKESV
Sbjct  799   KKCLKDLPKDLQSDILAKESVKAYKDCVSQAKNEAEKKECEKLLTPEAKKLLEEEAKESV  858

Query  729   KAYLDCVSQakteaekkeceklltpeakkkleeakksvkaYLDCVSRARNekekkecekL  788
             KAYLDCVSQAKTEAEKKECEKLLTPEA+KKLEEAKKSVKAYLDCVS+A+NE EKKECEKL
Sbjct  859   KAYLDCVSQAKTEAEKKECEKLLTPEARKKLEEAKKSVKAYLDCVSQAKNEDEKKECEKL  918

Query  789   LTPEAKKLLEQQALDCLKNAKTDKERKKCLKDLPKDLQKKVLAKESVKAYLDCVSQakte  848
             LTPEA+KLLEQQALDCLKNAKTD ERKKCLKDLPKDLQKKVLAKESVKAYLDCVSQAKTE
Sbjct  919   LTPEARKLLEQQALDCLKNAKTDEERKKCLKDLPKDLQKKVLAKESVKAYLDCVSQAKTE  978

Query  849   aekkeceklltPEARKLLEEAKKSVKAYLDCVSQakteaekkeceklltPearklleexa  908
             AEKKECEKLLTPEARKLLEEAK S+KAY DCVS+A+ E EKKECEKLLTPEA+KLLEE A
Sbjct  979   AEKKECEKLLTPEARKLLEEAKESIKAYKDCVSKARNEKEKKECEKLLTPEAKKLLEEEA  1038

Query  909   keSVKAYLDCVSQakneaekkeceklltleskkkleeakksvkaYLDCVSQakteaekke  968
             KESVKAYLDCVSQAK EAEKKECEKLLT E+KKKLEEAKKSVKAYLDCVSQAK E EKKE
Sbjct  1039  KESVKAYLDCVSQAKTEAEKKECEKLLTPEAKKKLEEAKKSVKAYLDCVSQAKNEDEKKE  1098

Query  969   ceklltPEAKKLLEQQALDCLKNAKTEADKKRCVKDLPKDLQKKVLAKESLKAYKDCVSK  1028
             CEKLLTPEAKKLLEQQALDCLKNAKTEADKKRCVKDLPKDLQKKVLAKES+KAYKDCVS+
Sbjct  1099  CEKLLTPEAKKLLEQQALDCLKNAKTEADKKRCVKDLPKDLQKKVLAKESVKAYKDCVSR  1158

Query  1029  ARNekekkeceklltpeakklleeakksvkaYLDCVSQakteaekkeceklltPEARKLL  1088
             ARNEKEKKECEKLLTPEAKKLLEEAKKSVKAYLDCVSQAKTEAEKKECEKLLTPEA+KLL
Sbjct  1159  ARNEKEKKECEKLLTPEAKKLLEEAKKSVKAYLDCVSQAKTEAEKKECEKLLTPEAKKLL  1218

Query  1089  EEAKESVKAYKDCVSKARNekekkecekLLTPEAKKLLEQQVLDCLKNAKTEADKKRCVK  1148
             EEAKES+KAYKDCVS+ARNEKEKKECEKLLTPEAKKLLEQQ LDCLKNAKTEADKKRCVK
Sbjct  1219  EEAKESLKAYKDCVSRARNEKEKKECEKLLTPEAKKLLEQQALDCLKNAKTEADKKRCVK  1278

Query  1149  DLPKDLQKKVLAKESVKAYLDCVSRARNekekkeceklltpeakklleeakeslkaYKDC  1208
             DLPKDLQKKVLAKESVKAYLDCVSRARNEKEKKECEKLLTPEAKKLLEEAKESLKAYKDC
Sbjct  1279  DLPKDLQKKVLAKESVKAYLDCVSRARNEKEKKECEKLLTPEAKKLLEEAKESLKAYKDC  1338

Query  1209  LSQARNEEERRACEKLLTPEARKLLEQEVKKSIKAYLDCVSRARNekekkecekLLTPEA  1268
             LSQARNEEERRACEKLLTPEARKLLEQEVKKS+KAYLDCVS+A+ E EKKECEKLLTPEA
Sbjct  1339  LSQARNEEERRACEKLLTPEARKLLEQEVKKSVKAYLDCVSQAKTEAEKKECEKLLTPEA  1398

Query  1269  RKFLAKQVLNCLEKAGNEEERKACLKNLPKDLQENILAKESLKAYKDCLSQARNEEERRA  1328
             RKFLAKQVLNCLEKAGNEEERKACLKNLPKDLQEN+LAKESLKAYKDCLSQARNEEERRA
Sbjct  1399  RKFLAKQVLNCLEKAGNEEERKACLKNLPKDLQENVLAKESLKAYKDCLSQARNEEERRA  1458

Query  1329  CEKLLTPEARKLLEQEVKKSVKAYLDCVSRARNekekkecekLLTPEARKFLAKELQQKD  1388
             CEKLLTPEARKLLEQEVKKSVKAYLDCVSRARNEKEKKECEKLLTPEARKFLAKELQQKD
Sbjct  1459  CEKLLTPEARKLLEQEVKKSVKAYLDCVSRARNEKEKKECEKLLTPEARKFLAKELQQKD  1518

Query  1389  KAIKDCLKNADPNDRAAIMKCLDGLSDEEKLKYLQEAREKAVADCLAMAKTDEEKRKCQN  1448
             KAIKDCLKNADPNDRAAIMKCLDGLSDEEKLKYLQEAREKAV DCL  A+TDEEKRKCQN
Sbjct  1519  KAIKDCLKNADPNDRAAIMKCLDGLSDEEKLKYLQEAREKAVLDCLKTARTDEEKRKCQN  1578

Query  1449  LYSDLIQEIQNKRTQNKQNQLSKTERLHQASECLDNLDDPTDQEAIEQCLEGLSDSERAL  1508
             LYSDLIQEIQNKRTQ+KQNQLSKTERLHQASECLDNLDDPTDQ+AIEQCLEGLSDSERAL
Sbjct  1579  LYSDLIQEIQNKRTQSKQNQLSKTERLHQASECLDNLDDPTDQQAIEQCLEGLSDSERAL  1638

Query  1509  ILGIKRQADEVDLIYSDLRNRKTFDNMAAKGYPLLPMDFKNGGDIATINATNVDADKIAS  1568
             ILGIKRQADEVD IYSDLRNRKTFDNMAAKGYPLLPMDFKNGGDIATINATNVDADKIAS
Sbjct  1639  ILGIKRQADEVDRIYSDLRNRKTFDNMAAKGYPLLPMDFKNGGDIATINATNVDADKIAS  1698

Query  1569  DNPIYASIEPDIAKQYETEKTIkdknleaklakalggnkkdddkekskkstaeakaennk  1628
             DNPIYASIEPDI+KQYETEKTIKDKNLEAKLAKALGGNKKDDDKEKSKKSTAEAK E+NK
Sbjct  1699  DNPIYASIEPDITKQYETEKTIKDKNLEAKLAKALGGNKKDDDKEKSKKSTAEAKVESNK  1758

Query  1629  IDKDVAETAKNISEIALKNKKEKSGEFVDENGNPIDDKKKAEKQDETSPVKQAFIGKSDP  1688
             IDKDVAETAKNISEIALKNKKEK+GEFVDENGNPIDDKKKAEKQDETSPVKQAFIGKSDP
Sbjct  1759  IDKDVAETAKNISEIALKNKKEKNGEFVDENGNPIDDKKKAEKQDETSPVKQAFIGKSDP  1818

Query  1689  TFVLAQYTPIEITLTSKVDATLTGIVSGVVAKDVWNMNGTMILLDKGTKVYGNYQSVKGG  1748
             TFVLAQYTPIEITLTSKVDATLTGIVSGVVAKDVWNMNGTMILLDKGTKVYGNYQSVKGG
Sbjct  1819  TFVLAQYTPIEITLTSKVDATLTGIVSGVVAKDVWNMNGTMILLDKGTKVYGNYQSVKGG  1878

Query  1749  TPIMTRLMIVFTKAITPDGVIIPLANAQAAGMLGEAGVDGYVNNHFMKRIGFAVIASVVN  1808
             TPIMTRLMIVFTKAITPDGVIIPLANAQAAGMLGEAGVDGYVNNHFMKRIGFAVIASVVN
Sbjct  1879  TPIMTRLMIVFTKAITPDGVIIPLANAQAAGMLGEAGVDGYVNNHFMKRIGFAVIASVVN  1938

Query  1809  SFLQTAPIIALDKLIGLGKGRSERTPEFNYALGQAINGSMQSSAQMSNQILGQLMNIPPS  1868
             SFLQTAPIIALDKLIGLGKGRSERTPEFNYALGQAINGSMQSSAQMSNQILGQLMNIPPS
Sbjct  1939  SFLQTAPIIALDKLIGLGKGRSERTPEFNYALGQAINGSMQSSAQMSNQILGQLMNIPPS  1998

Query  1869  FYKNEGDSIKILTMDDIDFSGVYDVKITNKSVVDEIIKQSTKTLSREHEEITTSPKGGN  1927
             FYKNEGDSIKILTMDDIDFSGVYDVKITNKSVVDEIIKQSTKTLSREHEEITTSPKGGN
Sbjct  1999  FYKNEGDSIKILTMDDIDFSGVYDVKITNKSVVDEIIKQSTKTLSREHEEITTSPKGGN  2057


 Score =  244 bits (911),  Expect = 3e-65, Method: Compositional matrix adjust.
 Identities = 292/326 (90%), Positives = 308/326 (95%), Gaps = 0/326 (0%)

Query  1    MNEENDKLETSKKAQQDSPQDLSNEEATEANHFENLLKESKESSDHHLDNPTETQTHFDG  60
            MNEENDKLETSKK+QQ+SPQDLSNEEATE NHFE+  KESKESSDHHL+NPTET+T+FDG
Sbjct  1    MNEENDKLETSKKTQQHSPQDLSNEEATEINHFEDSSKESKESSDHHLNNPTETKTNFDG  60

Query  61   DKSEETQTQMDsegnetsessngsLADKLFKKARKLVDNKKPFTQQKnldeetqelneed  120
            DKSEETQTQMDS G+ETSESSNGSLADKLFKKARKLVDNK+PFTQQKNLDEETQELNEED
Sbjct  61   DKSEETQTQMDSGGDETSESSNGSLADKLFKKARKLVDNKRPFTQQKNLDEETQELNEED  120

Query  121  dqenneyqeetqtdLIDDETSKKTQQHSPQDLSNEEATEANHFENLLKESKESSDHHLDN  180
            DQENN YQEETQT+LIDDETSKKTQQHSPQDLSNEEATE NHFE+  KESKESSD  LDN
Sbjct  121  DQENNGYQEETQTGLIDDETSKKTQQHSPQDLSNEEATEINHFEDSSKESKESSDPYLDN  180

Query  181  PTETQTNFDGDKSEETQTQMDsegnetsessngsLADKLFKKARKLVDNKKPFTQQKnld  240
            PTET+TNFDGDKSEETQTQMDS G+ETSESSNGSLADKLFKKARKLVDNK+PFTQQKNLD
Sbjct  181  PTETKTNFDGDKSEETQTQMDSGGDETSESSNGSLADKLFKKARKLVDNKRPFTQQKNLD  240

Query  241  eetqelneeddqenneyqeetqtdLIDDETSKKTQQHSPQDLSNEEATEANHFENLLKES  300
            EETQELNEEDDQENN YQEETQT+LIDDETSKKTQQHSPQDLSNEEATE NHFE+  KES
Sbjct  241  EETQELNEEDDQENNGYQEETQTGLIDDETSKKTQQHSPQDLSNEEATEINHFEDSSKES  300

Query  301  KESSDHHLDNPTETQTNFDGDKSEEI  326
            KESSD  LDNPTET+TNFDGDKSEE 
Sbjct  301  KESSDPYLDNPTETKTNFDGDKSEET  326

6) HP0527 in NC_000915


> JQ685140|1|G1|442739065|AGC69792.1|Helicobacter_pylori_J166_isolate_MJ166sc3|+|1..6174|cagY|-|cag 
pathogenicity island protein 
Y
Length=2057

 Score = 2026 bits (7699),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 1836/1919 (96%), Positives = 1878/1919 (98%), Gaps = 0/1919 (0%)

Query  9     ETSKKAQQDSPQDLSNEEATEANHFENLLKESKESSDHHLDNPTETQTHFDGDKSEETQT  68
             ETSKK+QQ+SPQDLSNEEATE NHFE+  KESKESSD  LDNPTET+T+FDGDKSEETQT
Sbjct  139   ETSKKTQQHSPQDLSNEEATEINHFEDSSKESKESSDPYLDNPTETKTNFDGDKSEETQT  198

Query  69    QMDsegnetsessngsLADKLFKKARKLVDNKKPFTQQKnldeetqelneeddqenneyq  128
             QMDS G+ETSESSNGSLADKLFKKARKLVDNK+PFTQQKNLDEETQELNEEDDQENN YQ
Sbjct  199   QMDSGGDETSESSNGSLADKLFKKARKLVDNKRPFTQQKNLDEETQELNEEDDQENNGYQ  258

Query  129   eetqtdLIDDETSKKTQQHSPQDLSNEEATEANHFENLLKESKESSDHHLDNPTETQTNF  188
             EETQT+LIDDETSKKTQQHSPQDLSNEEATE NHFE+  KESKESSD  LDNPTET+TNF
Sbjct  259   EETQTGLIDDETSKKTQQHSPQDLSNEEATEINHFEDSSKESKESSDPYLDNPTETKTNF  318

Query  189   DGDKSEETQTQMDsegnetsessngsLADKLFKKARKLVDNKKPFTQQKnldeetqelne  248
             DGDKSEETQTQMDS G+ETSESSNGSLADKLFKKARKLVDNK+PFTQQKNLDEETQELNE
Sbjct  319   DGDKSEETQTQMDSGGDETSESSNGSLADKLFKKARKLVDNKRPFTQQKNLDEETQELNE  378

Query  249   eddqenneyqeetqtdLIDDETSKKTQQHSPQDLSNEEATEANHFENLLKESKESSDHHL  308
             EDDQENN YQEETQT+LIDDETSKKTQQHSPQDLSNEEATE NHFE+  KESKESSD  L
Sbjct  379   EDDQENNGYQEETQTGLIDDETSKKTQQHSPQDLSNEEATEINHFEDSSKESKESSDPYL  438

Query  309   DNPTETQTNFDGDKSEEITDDSNDQEiikgskkkyiiggivvavliviilFSRSIFHYFM  368
             DNPTET+TNFD DKSEEIT+DSNDQEIIKGSKKKYIIGGIVVAVLIVIILFSRSIFHYFM
Sbjct  439   DNPTETKTNFDEDKSEEITNDSNDQEIIKGSKKKYIIGGIVVAVLIVIILFSRSIFHYFM  498

Query  369   PLEDKSSRFSKDRNLYVNDEIQIRQEYNRLLKERNEKGNMIDKNLFFNDDPNRTLYNYLN  428
             PLEDKSSRFSKDRNLYVNDEIQIRQEYNRLLKERNEKGNMIDKNLFFNDDPNRTLYNYLN
Sbjct  499   PLEDKSSRFSKDRNLYVNDEIQIRQEYNRLLKERNEKGNMIDKNLFFNDDPNRTLYNYLN  558

Query  429   IAEIEDKNPLRAFYECISNGGNYEEClklikdkklqdqmkktlEAYNDCIKNAKTEEERI  488
             IAEIEDKNPLRAFYECISNGGNYEECLKLIKDKKLQDQMKKTLEAYNDCIKNAKTEEERI
Sbjct  559   IAEIEDKNPLRAFYECISNGGNYEECLKLIKDKKLQDQMKKTLEAYNDCIKNAKTEEERI  618

Query  489   KCLDLIKDENLKKSLLNQQKVQVALDCLKNAKTDEERNECLKLINDPEIrekfrkelelq  548
             KCLDLIKDENLKKSLLNQQKVQVALDCLKNAKTDEER+ECLKLINDPEIREKFRKELELQ
Sbjct  619   KCLDLIKDENLKKSLLNQQKVQVALDCLKNAKTDEERKECLKLINDPEIREKFRKELELQ  678

Query  549   kelqeYKDCIKNAKTEAEKNKCLKGLSKEAIERLKQQALDCLKNAKTDEERNECLKNIPQ  608
             KELQEYKDCIKNAKTEAEKN CLKGLSKEAIERLKQQALDCLKNAKTDEERNECLKNIPQ
Sbjct  679   KELQEYKDCIKNAKTEAEKNECLKGLSKEAIERLKQQALDCLKNAKTDEERNECLKNIPQ  738

Query  609   DLQKELLADMSVKAYKDCVSKARNEKEKQECEKLLTPEARKKLEQQVLDCLKNAKTDEER  668
             DLQKELLADMSVKAYKDCVSKARNEKEKQECEKLLTPEARKKLEQQVLDCLKNAKTDEER
Sbjct  739   DLQKELLADMSVKAYKDCVSKARNEKEKQECEKLLTPEARKKLEQQVLDCLKNAKTDEER  798

Query  669   KKCLKDLPKDLQSDILAKESLKAYKDCVSQakteaekkeceklltpeakklleeeakeSV  728
             KKCLKDLPKDLQSDILAKES+KAYKDCVSQAK EAEKKECEKLLTPEAKKLLEEEAKESV
Sbjct  799   KKCLKDLPKDLQSDILAKESVKAYKDCVSQAKNEAEKKECEKLLTPEAKKLLEEEAKESV  858

Query  729   KAYLDCVSQakteaekkeceklltpeakkkleeakksvkaYLDCVSRARNekekkecekL  788
             KAYLDCVSQAKTEAEKKECEKLLTPEA+KKLEEAKKSVKAYLDCVS+A+NE EKKECEKL
Sbjct  859   KAYLDCVSQAKTEAEKKECEKLLTPEARKKLEEAKKSVKAYLDCVSQAKNEDEKKECEKL  918

Query  789   LTPEAKKLLEQQALDCLKNAKTDKERKKCLKDLPKDLQKKVLAKESVKAYLDCVSQakte  848
             LTPEA+KLLEQQALDCLKNAKTD ERKKCLKDLPKDLQKKVLAKESVKAYLDCVSQAKTE
Sbjct  919   LTPEARKLLEQQALDCLKNAKTDEERKKCLKDLPKDLQKKVLAKESVKAYLDCVSQAKTE  978

Query  849   aekkeceklltPEARKLLEEAKKSVKAYLDCVSQakteaekkeceklltPearklleexa  908
             AEKKECEKLLTPEARKLLEEAK S+KAY DCVS+A+ E EKKECEKLLTPEA+KLLEE A
Sbjct  979   AEKKECEKLLTPEARKLLEEAKESIKAYKDCVSKARNEKEKKECEKLLTPEAKKLLEEEA  1038

Query  909   keSVKAYLDCVSQakneaekkeceklltleskkkleeakksvkaYLDCVSQakteaekke  968
             KESVKAYLDCVSQAK EAEKKECEKLLT E+KKKLEEAKKSVKAYLDCVSQAK E EKKE
Sbjct  1039  KESVKAYLDCVSQAKTEAEKKECEKLLTPEAKKKLEEAKKSVKAYLDCVSQAKNEDEKKE  1098

Query  969   ceklltPEAKKLLEQQALDCLKNAKTEADKKRCVKDLPKDLQKKVLAKESLKAYKDCVSK  1028
             CEKLLTPEAKKLLEQQALDCLKNAKTEADKKRCVKDLPKDLQKKVLAKES+KAYKDCVS+
Sbjct  1099  CEKLLTPEAKKLLEQQALDCLKNAKTEADKKRCVKDLPKDLQKKVLAKESVKAYKDCVSR  1158

Query  1029  ARNekekkeceklltpeakklleeakksvkaYLDCVSQakteaekkeceklltPEARKLL  1088
             ARNEKEKKECEKLLTPEAKKLLEEAKKSVKAYLDCVSQAKTEAEKKECEKLLTPEA+KLL
Sbjct  1159  ARNEKEKKECEKLLTPEAKKLLEEAKKSVKAYLDCVSQAKTEAEKKECEKLLTPEAKKLL  1218

Query  1089  EEAKESVKAYKDCVSKARNekekkecekLLTPEAKKLLEQQVLDCLKNAKTEADKKRCVK  1148
             EEAKES+KAYKDCVS+ARNEKEKKECEKLLTPEAKKLLEQQ LDCLKNAKTEADKKRCVK
Sbjct  1219  EEAKESLKAYKDCVSRARNEKEKKECEKLLTPEAKKLLEQQALDCLKNAKTEADKKRCVK  1278

Query  1149  DLPKDLQKKVLAKESVKAYLDCVSRARNekekkeceklltpeakklleeakeslkaYKDC  1208
             DLPKDLQKKVLAKESVKAYLDCVSRARNEKEKKECEKLLTPEAKKLLEEAKESLKAYKDC
Sbjct  1279  DLPKDLQKKVLAKESVKAYLDCVSRARNEKEKKECEKLLTPEAKKLLEEAKESLKAYKDC  1338

Query  1209  LSQARNEEERRACEKLLTPEARKLLEQEVKKSIKAYLDCVSRARNekekkecekLLTPEA  1268
             LSQARNEEERRACEKLLTPEARKLLEQEVKKS+KAYLDCVS+A+ E EKKECEKLLTPEA
Sbjct  1339  LSQARNEEERRACEKLLTPEARKLLEQEVKKSVKAYLDCVSQAKTEAEKKECEKLLTPEA  1398

Query  1269  RKFLAKQVLNCLEKAGNEEERKACLKNLPKDLQENILAKESLKAYKDCLSQARNEEERRA  1328
             RKFLAKQVLNCLEKAGNEEERKACLKNLPKDLQEN+LAKESLKAYKDCLSQARNEEERRA
Sbjct  1399  RKFLAKQVLNCLEKAGNEEERKACLKNLPKDLQENVLAKESLKAYKDCLSQARNEEERRA  1458

Query  1329  CEKLLTPEARKLLEQEVKKSVKAYLDCVSRARNekekkecekLLTPEARKFLAKELQQKD  1388
             CEKLLTPEARKLLEQEVKKSVKAYLDCVSRARNEKEKKECEKLLTPEARKFLAKELQQKD
Sbjct  1459  CEKLLTPEARKLLEQEVKKSVKAYLDCVSRARNEKEKKECEKLLTPEARKFLAKELQQKD  1518

Query  1389  KAIKDCLKNADPNDRAAIMKCLDGLSDEEKLKYLQEAREKAVADCLAMAKTDEEKRKCQN  1448
             KAIKDCLKNADPNDRAAIMKCLDGLSDEEKLKYLQEAREKAV DCL  A+TDEEKRKCQN
Sbjct  1519  KAIKDCLKNADPNDRAAIMKCLDGLSDEEKLKYLQEAREKAVLDCLKTARTDEEKRKCQN  1578

Query  1449  LYSDLIQEIQNKRTQNKQNQLSKTERLHQASECLDNLDDPTDQEAIEQCLEGLSDSERAL  1508
             LYSDLIQEIQNKRTQ+KQNQLSKTERLHQASECLDNLDDPTDQ+AIEQCLEGLSDSERAL
Sbjct  1579  LYSDLIQEIQNKRTQSKQNQLSKTERLHQASECLDNLDDPTDQQAIEQCLEGLSDSERAL  1638

Query  1509  ILGIKRQADEVDLIYSDLRNRKTFDNMAAKGYPLLPMDFKNGGDIATINATNVDADKIAS  1568
             ILGIKRQADEVD IYSDLRNRKTFDNMAAKGYPLLPMDFKNGGDIATINATNVDADKIAS
Sbjct  1639  ILGIKRQADEVDRIYSDLRNRKTFDNMAAKGYPLLPMDFKNGGDIATINATNVDADKIAS  1698

Query  1569  DNPIYASIEPDIAKQYETEKTIkdknleaklakalggnkkdddkekskkstaeakaennk  1628
             DNPIYASIEPDI+KQYETEKTIKDKNLEAKLAKALGGNKKDDDKEKSKKSTAEAK E+NK
Sbjct  1699  DNPIYASIEPDITKQYETEKTIKDKNLEAKLAKALGGNKKDDDKEKSKKSTAEAKVESNK  1758

Query  1629  IDKDVAETAKNISEIALKNKKEKSGEFVDENGNPIDDKKKAEKQDETSPVKQAFIGKSDP  1688
             IDKDVAETAKNISEIALKNKKEK+GEFVDENGNPIDDKKKAEKQDETSPVKQAFIGKSDP
Sbjct  1759  IDKDVAETAKNISEIALKNKKEKNGEFVDENGNPIDDKKKAEKQDETSPVKQAFIGKSDP  1818

Query  1689  TFVLAQYTPIEITLTSKVDATLTGIVSGVVAKDVWNMNGTMILLDKGTKVYGNYQSVKGG  1748
             TFVLAQYTPIEITLTSKVDATLTGIVSGVVAKDVWNMNGTMILLDKGTKVYGNYQSVKGG
Sbjct  1819  TFVLAQYTPIEITLTSKVDATLTGIVSGVVAKDVWNMNGTMILLDKGTKVYGNYQSVKGG  1878

Query  1749  TPIMTRLMIVFTKAITPDGVIIPLANAQAAGMLGEAGVDGYVNNHFMKRIGFAVIASVVN  1808
             TPIMTRLMIVFTKAITPDGVIIPLANAQAAGMLGEAGVDGYVNNHFMKRIGFAVIASVVN
Sbjct  1879  TPIMTRLMIVFTKAITPDGVIIPLANAQAAGMLGEAGVDGYVNNHFMKRIGFAVIASVVN  1938

Query  1809  SFLQTAPIIALDKLIGLGKGRSERTPEFNYALGQAINGSMQSSAQMSNQILGQLMNIPPS  1868
             SFLQTAPIIALDKLIGLGKGRSERTPEFNYALGQAINGSMQSSAQMSNQILGQLMNIPPS
Sbjct  1939  SFLQTAPIIALDKLIGLGKGRSERTPEFNYALGQAINGSMQSSAQMSNQILGQLMNIPPS  1998

Query  1869  FYKNEGDSIKILTMDDIDFSGVYDVKITNKSVVDEIIKQSTKTLSREHEEITTSPKGGN  1927
             FYKNEGDSIKILTMDDIDFSGVYDVKITNKSVVDEIIKQSTKTLSREHEEITTSPKGGN
Sbjct  1999  FYKNEGDSIKILTMDDIDFSGVYDVKITNKSVVDEIIKQSTKTLSREHEEITTSPKGGN  2057


 Score =  244 bits (911),  Expect = 3e-65, Method: Compositional matrix adjust.
 Identities = 292/326 (90%), Positives = 308/326 (95%), Gaps = 0/326 (0%)

Query  1    MNEENDKLETSKKAQQDSPQDLSNEEATEANHFENLLKESKESSDHHLDNPTETQTHFDG  60
            MNEENDKLETSKK+QQ+SPQDLSNEEATE NHFE+  KESKESSDHHL+NPTET+T+FDG
Sbjct  1    MNEENDKLETSKKTQQHSPQDLSNEEATEINHFEDSSKESKESSDHHLNNPTETKTNFDG  60

Query  61   DKSEETQTQMDsegnetsessngsLADKLFKKARKLVDNKKPFTQQKnldeetqelneed  120
            DKSEETQTQMDS G+ETSESSNGSLADKLFKKARKLVDNK+PFTQQKNLDEETQELNEED
Sbjct  61   DKSEETQTQMDSGGDETSESSNGSLADKLFKKARKLVDNKRPFTQQKNLDEETQELNEED  120

Query  121  dqenneyqeetqtdLIDDETSKKTQQHSPQDLSNEEATEANHFENLLKESKESSDHHLDN  180
            DQENN YQEETQT+LIDDETSKKTQQHSPQDLSNEEATE NHFE+  KESKESSD  LDN
Sbjct  121  DQENNGYQEETQTGLIDDETSKKTQQHSPQDLSNEEATEINHFEDSSKESKESSDPYLDN  180

Query  181  PTETQTNFDGDKSEETQTQMDsegnetsessngsLADKLFKKARKLVDNKKPFTQQKnld  240
            PTET+TNFDGDKSEETQTQMDS G+ETSESSNGSLADKLFKKARKLVDNK+PFTQQKNLD
Sbjct  181  PTETKTNFDGDKSEETQTQMDSGGDETSESSNGSLADKLFKKARKLVDNKRPFTQQKNLD  240

Query  241  eetqelneeddqenneyqeetqtdLIDDETSKKTQQHSPQDLSNEEATEANHFENLLKES  300
            EETQELNEEDDQENN YQEETQT+LIDDETSKKTQQHSPQDLSNEEATE NHFE+  KES
Sbjct  241  EETQELNEEDDQENNGYQEETQTGLIDDETSKKTQQHSPQDLSNEEATEINHFEDSSKES  300

Query  301  KESSDHHLDNPTETQTNFDGDKSEEI  326
            KESSD  LDNPTET+TNFDGDKSEE 
Sbjct  301  KESSDPYLDNPTETKTNFDGDKSEET  326

7) C695_02720 in NC_018937


> JQ685140|1|G1|442739065|AGC69792.1|Helicobacter_pylori_J166_isolate_MJ166sc3|+|1..6174|cagY|-|cag 
pathogenicity island protein 
Y
Length=2057

 Score = 2026 bits (7699),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 1836/1919 (96%), Positives = 1878/1919 (98%), Gaps = 0/1919 (0%)

Query  9     ETSKKAQQDSPQDLSNEEATEANHFENLLKESKESSDHHLDNPTETQTHFDGDKSEETQT  68
             ETSKK+QQ+SPQDLSNEEATE NHFE+  KESKESSD  LDNPTET+T+FDGDKSEETQT
Sbjct  139   ETSKKTQQHSPQDLSNEEATEINHFEDSSKESKESSDPYLDNPTETKTNFDGDKSEETQT  198

Query  69    QMDsegnetsessngsLADKLFKKARKLVDNKKPFTQQKnldeetqelneeddqenneyq  128
             QMDS G+ETSESSNGSLADKLFKKARKLVDNK+PFTQQKNLDEETQELNEEDDQENN YQ
Sbjct  199   QMDSGGDETSESSNGSLADKLFKKARKLVDNKRPFTQQKNLDEETQELNEEDDQENNGYQ  258

Query  129   eetqtdLIDDETSKKTQQHSPQDLSNEEATEANHFENLLKESKESSDHHLDNPTETQTNF  188
             EETQT+LIDDETSKKTQQHSPQDLSNEEATE NHFE+  KESKESSD  LDNPTET+TNF
Sbjct  259   EETQTGLIDDETSKKTQQHSPQDLSNEEATEINHFEDSSKESKESSDPYLDNPTETKTNF  318

Query  189   DGDKSEETQTQMDsegnetsessngsLADKLFKKARKLVDNKKPFTQQKnldeetqelne  248
             DGDKSEETQTQMDS G+ETSESSNGSLADKLFKKARKLVDNK+PFTQQKNLDEETQELNE
Sbjct  319   DGDKSEETQTQMDSGGDETSESSNGSLADKLFKKARKLVDNKRPFTQQKNLDEETQELNE  378

Query  249   eddqenneyqeetqtdLIDDETSKKTQQHSPQDLSNEEATEANHFENLLKESKESSDHHL  308
             EDDQENN YQEETQT+LIDDETSKKTQQHSPQDLSNEEATE NHFE+  KESKESSD  L
Sbjct  379   EDDQENNGYQEETQTGLIDDETSKKTQQHSPQDLSNEEATEINHFEDSSKESKESSDPYL  438

Query  309   DNPTETQTNFDGDKSEEITDDSNDQEiikgskkkyiiggivvavliviilFSRSIFHYFM  368
             DNPTET+TNFD DKSEEIT+DSNDQEIIKGSKKKYIIGGIVVAVLIVIILFSRSIFHYFM
Sbjct  439   DNPTETKTNFDEDKSEEITNDSNDQEIIKGSKKKYIIGGIVVAVLIVIILFSRSIFHYFM  498

Query  369   PLEDKSSRFSKDRNLYVNDEIQIRQEYNRLLKERNEKGNMIDKNLFFNDDPNRTLYNYLN  428
             PLEDKSSRFSKDRNLYVNDEIQIRQEYNRLLKERNEKGNMIDKNLFFNDDPNRTLYNYLN
Sbjct  499   PLEDKSSRFSKDRNLYVNDEIQIRQEYNRLLKERNEKGNMIDKNLFFNDDPNRTLYNYLN  558

Query  429   IAEIEDKNPLRAFYECISNGGNYEEClklikdkklqdqmkktlEAYNDCIKNAKTEEERI  488
             IAEIEDKNPLRAFYECISNGGNYEECLKLIKDKKLQDQMKKTLEAYNDCIKNAKTEEERI
Sbjct  559   IAEIEDKNPLRAFYECISNGGNYEECLKLIKDKKLQDQMKKTLEAYNDCIKNAKTEEERI  618

Query  489   KCLDLIKDENLKKSLLNQQKVQVALDCLKNAKTDEERNECLKLINDPEIrekfrkelelq  548
             KCLDLIKDENLKKSLLNQQKVQVALDCLKNAKTDEER+ECLKLINDPEIREKFRKELELQ
Sbjct  619   KCLDLIKDENLKKSLLNQQKVQVALDCLKNAKTDEERKECLKLINDPEIREKFRKELELQ  678

Query  549   kelqeYKDCIKNAKTEAEKNKCLKGLSKEAIERLKQQALDCLKNAKTDEERNECLKNIPQ  608
             KELQEYKDCIKNAKTEAEKN CLKGLSKEAIERLKQQALDCLKNAKTDEERNECLKNIPQ
Sbjct  679   KELQEYKDCIKNAKTEAEKNECLKGLSKEAIERLKQQALDCLKNAKTDEERNECLKNIPQ  738

Query  609   DLQKELLADMSVKAYKDCVSKARNEKEKQECEKLLTPEARKKLEQQVLDCLKNAKTDEER  668
             DLQKELLADMSVKAYKDCVSKARNEKEKQECEKLLTPEARKKLEQQVLDCLKNAKTDEER
Sbjct  739   DLQKELLADMSVKAYKDCVSKARNEKEKQECEKLLTPEARKKLEQQVLDCLKNAKTDEER  798

Query  669   KKCLKDLPKDLQSDILAKESLKAYKDCVSQakteaekkeceklltpeakklleeeakeSV  728
             KKCLKDLPKDLQSDILAKES+KAYKDCVSQAK EAEKKECEKLLTPEAKKLLEEEAKESV
Sbjct  799   KKCLKDLPKDLQSDILAKESVKAYKDCVSQAKNEAEKKECEKLLTPEAKKLLEEEAKESV  858

Query  729   KAYLDCVSQakteaekkeceklltpeakkkleeakksvkaYLDCVSRARNekekkecekL  788
             KAYLDCVSQAKTEAEKKECEKLLTPEA+KKLEEAKKSVKAYLDCVS+A+NE EKKECEKL
Sbjct  859   KAYLDCVSQAKTEAEKKECEKLLTPEARKKLEEAKKSVKAYLDCVSQAKNEDEKKECEKL  918

Query  789   LTPEAKKLLEQQALDCLKNAKTDKERKKCLKDLPKDLQKKVLAKESVKAYLDCVSQakte  848
             LTPEA+KLLEQQALDCLKNAKTD ERKKCLKDLPKDLQKKVLAKESVKAYLDCVSQAKTE
Sbjct  919   LTPEARKLLEQQALDCLKNAKTDEERKKCLKDLPKDLQKKVLAKESVKAYLDCVSQAKTE  978

Query  849   aekkeceklltPEARKLLEEAKKSVKAYLDCVSQakteaekkeceklltPearklleexa  908
             AEKKECEKLLTPEARKLLEEAK S+KAY DCVS+A+ E EKKECEKLLTPEA+KLLEE A
Sbjct  979   AEKKECEKLLTPEARKLLEEAKESIKAYKDCVSKARNEKEKKECEKLLTPEAKKLLEEEA  1038

Query  909   keSVKAYLDCVSQakneaekkeceklltleskkkleeakksvkaYLDCVSQakteaekke  968
             KESVKAYLDCVSQAK EAEKKECEKLLT E+KKKLEEAKKSVKAYLDCVSQAK E EKKE
Sbjct  1039  KESVKAYLDCVSQAKTEAEKKECEKLLTPEAKKKLEEAKKSVKAYLDCVSQAKNEDEKKE  1098

Query  969   ceklltPEAKKLLEQQALDCLKNAKTEADKKRCVKDLPKDLQKKVLAKESLKAYKDCVSK  1028
             CEKLLTPEAKKLLEQQALDCLKNAKTEADKKRCVKDLPKDLQKKVLAKES+KAYKDCVS+
Sbjct  1099  CEKLLTPEAKKLLEQQALDCLKNAKTEADKKRCVKDLPKDLQKKVLAKESVKAYKDCVSR  1158

Query  1029  ARNekekkeceklltpeakklleeakksvkaYLDCVSQakteaekkeceklltPEARKLL  1088
             ARNEKEKKECEKLLTPEAKKLLEEAKKSVKAYLDCVSQAKTEAEKKECEKLLTPEA+KLL
Sbjct  1159  ARNEKEKKECEKLLTPEAKKLLEEAKKSVKAYLDCVSQAKTEAEKKECEKLLTPEAKKLL  1218

Query  1089  EEAKESVKAYKDCVSKARNekekkecekLLTPEAKKLLEQQVLDCLKNAKTEADKKRCVK  1148
             EEAKES+KAYKDCVS+ARNEKEKKECEKLLTPEAKKLLEQQ LDCLKNAKTEADKKRCVK
Sbjct  1219  EEAKESLKAYKDCVSRARNEKEKKECEKLLTPEAKKLLEQQALDCLKNAKTEADKKRCVK  1278

Query  1149  DLPKDLQKKVLAKESVKAYLDCVSRARNekekkeceklltpeakklleeakeslkaYKDC  1208
             DLPKDLQKKVLAKESVKAYLDCVSRARNEKEKKECEKLLTPEAKKLLEEAKESLKAYKDC
Sbjct  1279  DLPKDLQKKVLAKESVKAYLDCVSRARNEKEKKECEKLLTPEAKKLLEEAKESLKAYKDC  1338

Query  1209  LSQARNEEERRACEKLLTPEARKLLEQEVKKSIKAYLDCVSRARNekekkecekLLTPEA  1268
             LSQARNEEERRACEKLLTPEARKLLEQEVKKS+KAYLDCVS+A+ E EKKECEKLLTPEA
Sbjct  1339  LSQARNEEERRACEKLLTPEARKLLEQEVKKSVKAYLDCVSQAKTEAEKKECEKLLTPEA  1398

Query  1269  RKFLAKQVLNCLEKAGNEEERKACLKNLPKDLQENILAKESLKAYKDCLSQARNEEERRA  1328
             RKFLAKQVLNCLEKAGNEEERKACLKNLPKDLQEN+LAKESLKAYKDCLSQARNEEERRA
Sbjct  1399  RKFLAKQVLNCLEKAGNEEERKACLKNLPKDLQENVLAKESLKAYKDCLSQARNEEERRA  1458

Query  1329  CEKLLTPEARKLLEQEVKKSVKAYLDCVSRARNekekkecekLLTPEARKFLAKELQQKD  1388
             CEKLLTPEARKLLEQEVKKSVKAYLDCVSRARNEKEKKECEKLLTPEARKFLAKELQQKD
Sbjct  1459  CEKLLTPEARKLLEQEVKKSVKAYLDCVSRARNEKEKKECEKLLTPEARKFLAKELQQKD  1518

Query  1389  KAIKDCLKNADPNDRAAIMKCLDGLSDEEKLKYLQEAREKAVADCLAMAKTDEEKRKCQN  1448
             KAIKDCLKNADPNDRAAIMKCLDGLSDEEKLKYLQEAREKAV DCL  A+TDEEKRKCQN
Sbjct  1519  KAIKDCLKNADPNDRAAIMKCLDGLSDEEKLKYLQEAREKAVLDCLKTARTDEEKRKCQN  1578

Query  1449  LYSDLIQEIQNKRTQNKQNQLSKTERLHQASECLDNLDDPTDQEAIEQCLEGLSDSERAL  1508
             LYSDLIQEIQNKRTQ+KQNQLSKTERLHQASECLDNLDDPTDQ+AIEQCLEGLSDSERAL
Sbjct  1579  LYSDLIQEIQNKRTQSKQNQLSKTERLHQASECLDNLDDPTDQQAIEQCLEGLSDSERAL  1638

Query  1509  ILGIKRQADEVDLIYSDLRNRKTFDNMAAKGYPLLPMDFKNGGDIATINATNVDADKIAS  1568
             ILGIKRQADEVD IYSDLRNRKTFDNMAAKGYPLLPMDFKNGGDIATINATNVDADKIAS
Sbjct  1639  ILGIKRQADEVDRIYSDLRNRKTFDNMAAKGYPLLPMDFKNGGDIATINATNVDADKIAS  1698

Query  1569  DNPIYASIEPDIAKQYETEKTIkdknleaklakalggnkkdddkekskkstaeakaennk  1628
             DNPIYASIEPDI+KQYETEKTIKDKNLEAKLAKALGGNKKDDDKEKSKKSTAEAK E+NK
Sbjct  1699  DNPIYASIEPDITKQYETEKTIKDKNLEAKLAKALGGNKKDDDKEKSKKSTAEAKVESNK  1758

Query  1629  IDKDVAETAKNISEIALKNKKEKSGEFVDENGNPIDDKKKAEKQDETSPVKQAFIGKSDP  1688
             IDKDVAETAKNISEIALKNKKEK+GEFVDENGNPIDDKKKAEKQDETSPVKQAFIGKSDP
Sbjct  1759  IDKDVAETAKNISEIALKNKKEKNGEFVDENGNPIDDKKKAEKQDETSPVKQAFIGKSDP  1818

Query  1689  TFVLAQYTPIEITLTSKVDATLTGIVSGVVAKDVWNMNGTMILLDKGTKVYGNYQSVKGG  1748
             TFVLAQYTPIEITLTSKVDATLTGIVSGVVAKDVWNMNGTMILLDKGTKVYGNYQSVKGG
Sbjct  1819  TFVLAQYTPIEITLTSKVDATLTGIVSGVVAKDVWNMNGTMILLDKGTKVYGNYQSVKGG  1878

Query  1749  TPIMTRLMIVFTKAITPDGVIIPLANAQAAGMLGEAGVDGYVNNHFMKRIGFAVIASVVN  1808
             TPIMTRLMIVFTKAITPDGVIIPLANAQAAGMLGEAGVDGYVNNHFMKRIGFAVIASVVN
Sbjct  1879  TPIMTRLMIVFTKAITPDGVIIPLANAQAAGMLGEAGVDGYVNNHFMKRIGFAVIASVVN  1938

Query  1809  SFLQTAPIIALDKLIGLGKGRSERTPEFNYALGQAINGSMQSSAQMSNQILGQLMNIPPS  1868
             SFLQTAPIIALDKLIGLGKGRSERTPEFNYALGQAINGSMQSSAQMSNQILGQLMNIPPS
Sbjct  1939  SFLQTAPIIALDKLIGLGKGRSERTPEFNYALGQAINGSMQSSAQMSNQILGQLMNIPPS  1998

Query  1869  FYKNEGDSIKILTMDDIDFSGVYDVKITNKSVVDEIIKQSTKTLSREHEEITTSPKGGN  1927
             FYKNEGDSIKILTMDDIDFSGVYDVKITNKSVVDEIIKQSTKTLSREHEEITTSPKGGN
Sbjct  1999  FYKNEGDSIKILTMDDIDFSGVYDVKITNKSVVDEIIKQSTKTLSREHEEITTSPKGGN  2057


 Score =  244 bits (911),  Expect = 3e-65, Method: Compositional matrix adjust.
 Identities = 292/326 (90%), Positives = 308/326 (95%), Gaps = 0/326 (0%)

Query  1    MNEENDKLETSKKAQQDSPQDLSNEEATEANHFENLLKESKESSDHHLDNPTETQTHFDG  60
            MNEENDKLETSKK+QQ+SPQDLSNEEATE NHFE+  KESKESSDHHL+NPTET+T+FDG
Sbjct  1    MNEENDKLETSKKTQQHSPQDLSNEEATEINHFEDSSKESKESSDHHLNNPTETKTNFDG  60

Query  61   DKSEETQTQMDsegnetsessngsLADKLFKKARKLVDNKKPFTQQKnldeetqelneed  120
            DKSEETQTQMDS G+ETSESSNGSLADKLFKKARKLVDNK+PFTQQKNLDEETQELNEED
Sbjct  61   DKSEETQTQMDSGGDETSESSNGSLADKLFKKARKLVDNKRPFTQQKNLDEETQELNEED  120

Query  121  dqenneyqeetqtdLIDDETSKKTQQHSPQDLSNEEATEANHFENLLKESKESSDHHLDN  180
            DQENN YQEETQT+LIDDETSKKTQQHSPQDLSNEEATE NHFE+  KESKESSD  LDN
Sbjct  121  DQENNGYQEETQTGLIDDETSKKTQQHSPQDLSNEEATEINHFEDSSKESKESSDPYLDN  180

Query  181  PTETQTNFDGDKSEETQTQMDsegnetsessngsLADKLFKKARKLVDNKKPFTQQKnld  240
            PTET+TNFDGDKSEETQTQMDS G+ETSESSNGSLADKLFKKARKLVDNK+PFTQQKNLD
Sbjct  181  PTETKTNFDGDKSEETQTQMDSGGDETSESSNGSLADKLFKKARKLVDNKRPFTQQKNLD  240

Query  241  eetqelneeddqenneyqeetqtdLIDDETSKKTQQHSPQDLSNEEATEANHFENLLKES  300
            EETQELNEEDDQENN YQEETQT+LIDDETSKKTQQHSPQDLSNEEATE NHFE+  KES
Sbjct  241  EETQELNEEDDQENNGYQEETQTGLIDDETSKKTQQHSPQDLSNEEATEINHFEDSSKES  300

Query  301  KESSDHHLDNPTETQTNFDGDKSEEI  326
            KESSD  LDNPTET+TNFDGDKSEE 
Sbjct  301  KESSDPYLDNPTETKTNFDGDKSEET  326

8) C730_02720 in NC_018938


> JQ685140|1|G1|442739065|AGC69792.1|Helicobacter_pylori_J166_isolate_MJ166sc3|+|1..6174|cagY|-|cag 
pathogenicity island protein 
Y
Length=2057

 Score = 2026 bits (7699),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 1836/1919 (96%), Positives = 1878/1919 (98%), Gaps = 0/1919 (0%)

Query  9     ETSKKAQQDSPQDLSNEEATEANHFENLLKESKESSDHHLDNPTETQTHFDGDKSEETQT  68
             ETSKK+QQ+SPQDLSNEEATE NHFE+  KESKESSD  LDNPTET+T+FDGDKSEETQT
Sbjct  139   ETSKKTQQHSPQDLSNEEATEINHFEDSSKESKESSDPYLDNPTETKTNFDGDKSEETQT  198

Query  69    QMDsegnetsessngsLADKLFKKARKLVDNKKPFTQQKnldeetqelneeddqenneyq  128
             QMDS G+ETSESSNGSLADKLFKKARKLVDNK+PFTQQKNLDEETQELNEEDDQENN YQ
Sbjct  199   QMDSGGDETSESSNGSLADKLFKKARKLVDNKRPFTQQKNLDEETQELNEEDDQENNGYQ  258

Query  129   eetqtdLIDDETSKKTQQHSPQDLSNEEATEANHFENLLKESKESSDHHLDNPTETQTNF  188
             EETQT+LIDDETSKKTQQHSPQDLSNEEATE NHFE+  KESKESSD  LDNPTET+TNF
Sbjct  259   EETQTGLIDDETSKKTQQHSPQDLSNEEATEINHFEDSSKESKESSDPYLDNPTETKTNF  318

Query  189   DGDKSEETQTQMDsegnetsessngsLADKLFKKARKLVDNKKPFTQQKnldeetqelne  248
             DGDKSEETQTQMDS G+ETSESSNGSLADKLFKKARKLVDNK+PFTQQKNLDEETQELNE
Sbjct  319   DGDKSEETQTQMDSGGDETSESSNGSLADKLFKKARKLVDNKRPFTQQKNLDEETQELNE  378

Query  249   eddqenneyqeetqtdLIDDETSKKTQQHSPQDLSNEEATEANHFENLLKESKESSDHHL  308
             EDDQENN YQEETQT+LIDDETSKKTQQHSPQDLSNEEATE NHFE+  KESKESSD  L
Sbjct  379   EDDQENNGYQEETQTGLIDDETSKKTQQHSPQDLSNEEATEINHFEDSSKESKESSDPYL  438

Query  309   DNPTETQTNFDGDKSEEITDDSNDQEiikgskkkyiiggivvavliviilFSRSIFHYFM  368
             DNPTET+TNFD DKSEEIT+DSNDQEIIKGSKKKYIIGGIVVAVLIVIILFSRSIFHYFM
Sbjct  439   DNPTETKTNFDEDKSEEITNDSNDQEIIKGSKKKYIIGGIVVAVLIVIILFSRSIFHYFM  498

Query  369   PLEDKSSRFSKDRNLYVNDEIQIRQEYNRLLKERNEKGNMIDKNLFFNDDPNRTLYNYLN  428
             PLEDKSSRFSKDRNLYVNDEIQIRQEYNRLLKERNEKGNMIDKNLFFNDDPNRTLYNYLN
Sbjct  499   PLEDKSSRFSKDRNLYVNDEIQIRQEYNRLLKERNEKGNMIDKNLFFNDDPNRTLYNYLN  558

Query  429   IAEIEDKNPLRAFYECISNGGNYEEClklikdkklqdqmkktlEAYNDCIKNAKTEEERI  488
             IAEIEDKNPLRAFYECISNGGNYEECLKLIKDKKLQDQMKKTLEAYNDCIKNAKTEEERI
Sbjct  559   IAEIEDKNPLRAFYECISNGGNYEECLKLIKDKKLQDQMKKTLEAYNDCIKNAKTEEERI  618

Query  489   KCLDLIKDENLKKSLLNQQKVQVALDCLKNAKTDEERNECLKLINDPEIrekfrkelelq  548
             KCLDLIKDENLKKSLLNQQKVQVALDCLKNAKTDEER+ECLKLINDPEIREKFRKELELQ
Sbjct  619   KCLDLIKDENLKKSLLNQQKVQVALDCLKNAKTDEERKECLKLINDPEIREKFRKELELQ  678

Query  549   kelqeYKDCIKNAKTEAEKNKCLKGLSKEAIERLKQQALDCLKNAKTDEERNECLKNIPQ  608
             KELQEYKDCIKNAKTEAEKN CLKGLSKEAIERLKQQALDCLKNAKTDEERNECLKNIPQ
Sbjct  679   KELQEYKDCIKNAKTEAEKNECLKGLSKEAIERLKQQALDCLKNAKTDEERNECLKNIPQ  738

Query  609   DLQKELLADMSVKAYKDCVSKARNEKEKQECEKLLTPEARKKLEQQVLDCLKNAKTDEER  668
             DLQKELLADMSVKAYKDCVSKARNEKEKQECEKLLTPEARKKLEQQVLDCLKNAKTDEER
Sbjct  739   DLQKELLADMSVKAYKDCVSKARNEKEKQECEKLLTPEARKKLEQQVLDCLKNAKTDEER  798

Query  669   KKCLKDLPKDLQSDILAKESLKAYKDCVSQakteaekkeceklltpeakklleeeakeSV  728
             KKCLKDLPKDLQSDILAKES+KAYKDCVSQAK EAEKKECEKLLTPEAKKLLEEEAKESV
Sbjct  799   KKCLKDLPKDLQSDILAKESVKAYKDCVSQAKNEAEKKECEKLLTPEAKKLLEEEAKESV  858

Query  729   KAYLDCVSQakteaekkeceklltpeakkkleeakksvkaYLDCVSRARNekekkecekL  788
             KAYLDCVSQAKTEAEKKECEKLLTPEA+KKLEEAKKSVKAYLDCVS+A+NE EKKECEKL
Sbjct  859   KAYLDCVSQAKTEAEKKECEKLLTPEARKKLEEAKKSVKAYLDCVSQAKNEDEKKECEKL  918

Query  789   LTPEAKKLLEQQALDCLKNAKTDKERKKCLKDLPKDLQKKVLAKESVKAYLDCVSQakte  848
             LTPEA+KLLEQQALDCLKNAKTD ERKKCLKDLPKDLQKKVLAKESVKAYLDCVSQAKTE
Sbjct  919   LTPEARKLLEQQALDCLKNAKTDEERKKCLKDLPKDLQKKVLAKESVKAYLDCVSQAKTE  978

Query  849   aekkeceklltPEARKLLEEAKKSVKAYLDCVSQakteaekkeceklltPearklleexa  908
             AEKKECEKLLTPEARKLLEEAK S+KAY DCVS+A+ E EKKECEKLLTPEA+KLLEE A
Sbjct  979   AEKKECEKLLTPEARKLLEEAKESIKAYKDCVSKARNEKEKKECEKLLTPEAKKLLEEEA  1038

Query  909   keSVKAYLDCVSQakneaekkeceklltleskkkleeakksvkaYLDCVSQakteaekke  968
             KESVKAYLDCVSQAK EAEKKECEKLLT E+KKKLEEAKKSVKAYLDCVSQAK E EKKE
Sbjct  1039  KESVKAYLDCVSQAKTEAEKKECEKLLTPEAKKKLEEAKKSVKAYLDCVSQAKNEDEKKE  1098

Query  969   ceklltPEAKKLLEQQALDCLKNAKTEADKKRCVKDLPKDLQKKVLAKESLKAYKDCVSK  1028
             CEKLLTPEAKKLLEQQALDCLKNAKTEADKKRCVKDLPKDLQKKVLAKES+KAYKDCVS+
Sbjct  1099  CEKLLTPEAKKLLEQQALDCLKNAKTEADKKRCVKDLPKDLQKKVLAKESVKAYKDCVSR  1158

Query  1029  ARNekekkeceklltpeakklleeakksvkaYLDCVSQakteaekkeceklltPEARKLL  1088
             ARNEKEKKECEKLLTPEAKKLLEEAKKSVKAYLDCVSQAKTEAEKKECEKLLTPEA+KLL
Sbjct  1159  ARNEKEKKECEKLLTPEAKKLLEEAKKSVKAYLDCVSQAKTEAEKKECEKLLTPEAKKLL  1218

Query  1089  EEAKESVKAYKDCVSKARNekekkecekLLTPEAKKLLEQQVLDCLKNAKTEADKKRCVK  1148
             EEAKES+KAYKDCVS+ARNEKEKKECEKLLTPEAKKLLEQQ LDCLKNAKTEADKKRCVK
Sbjct  1219  EEAKESLKAYKDCVSRARNEKEKKECEKLLTPEAKKLLEQQALDCLKNAKTEADKKRCVK  1278

Query  1149  DLPKDLQKKVLAKESVKAYLDCVSRARNekekkeceklltpeakklleeakeslkaYKDC  1208
             DLPKDLQKKVLAKESVKAYLDCVSRARNEKEKKECEKLLTPEAKKLLEEAKESLKAYKDC
Sbjct  1279  DLPKDLQKKVLAKESVKAYLDCVSRARNEKEKKECEKLLTPEAKKLLEEAKESLKAYKDC  1338

Query  1209  LSQARNEEERRACEKLLTPEARKLLEQEVKKSIKAYLDCVSRARNekekkecekLLTPEA  1268
             LSQARNEEERRACEKLLTPEARKLLEQEVKKS+KAYLDCVS+A+ E EKKECEKLLTPEA
Sbjct  1339  LSQARNEEERRACEKLLTPEARKLLEQEVKKSVKAYLDCVSQAKTEAEKKECEKLLTPEA  1398

Query  1269  RKFLAKQVLNCLEKAGNEEERKACLKNLPKDLQENILAKESLKAYKDCLSQARNEEERRA  1328
             RKFLAKQVLNCLEKAGNEEERKACLKNLPKDLQEN+LAKESLKAYKDCLSQARNEEERRA
Sbjct  1399  RKFLAKQVLNCLEKAGNEEERKACLKNLPKDLQENVLAKESLKAYKDCLSQARNEEERRA  1458

Query  1329  CEKLLTPEARKLLEQEVKKSVKAYLDCVSRARNekekkecekLLTPEARKFLAKELQQKD  1388
             CEKLLTPEARKLLEQEVKKSVKAYLDCVSRARNEKEKKECEKLLTPEARKFLAKELQQKD
Sbjct  1459  CEKLLTPEARKLLEQEVKKSVKAYLDCVSRARNEKEKKECEKLLTPEARKFLAKELQQKD  1518

Query  1389  KAIKDCLKNADPNDRAAIMKCLDGLSDEEKLKYLQEAREKAVADCLAMAKTDEEKRKCQN  1448
             KAIKDCLKNADPNDRAAIMKCLDGLSDEEKLKYLQEAREKAV DCL  A+TDEEKRKCQN
Sbjct  1519  KAIKDCLKNADPNDRAAIMKCLDGLSDEEKLKYLQEAREKAVLDCLKTARTDEEKRKCQN  1578

Query  1449  LYSDLIQEIQNKRTQNKQNQLSKTERLHQASECLDNLDDPTDQEAIEQCLEGLSDSERAL  1508
             LYSDLIQEIQNKRTQ+KQNQLSKTERLHQASECLDNLDDPTDQ+AIEQCLEGLSDSERAL
Sbjct  1579  LYSDLIQEIQNKRTQSKQNQLSKTERLHQASECLDNLDDPTDQQAIEQCLEGLSDSERAL  1638

Query  1509  ILGIKRQADEVDLIYSDLRNRKTFDNMAAKGYPLLPMDFKNGGDIATINATNVDADKIAS  1568
             ILGIKRQADEVD IYSDLRNRKTFDNMAAKGYPLLPMDFKNGGDIATINATNVDADKIAS
Sbjct  1639  ILGIKRQADEVDRIYSDLRNRKTFDNMAAKGYPLLPMDFKNGGDIATINATNVDADKIAS  1698

Query  1569  DNPIYASIEPDIAKQYETEKTIkdknleaklakalggnkkdddkekskkstaeakaennk  1628
             DNPIYASIEPDI+KQYETEKTIKDKNLEAKLAKALGGNKKDDDKEKSKKSTAEAK E+NK
Sbjct  1699  DNPIYASIEPDITKQYETEKTIKDKNLEAKLAKALGGNKKDDDKEKSKKSTAEAKVESNK  1758

Query  1629  IDKDVAETAKNISEIALKNKKEKSGEFVDENGNPIDDKKKAEKQDETSPVKQAFIGKSDP  1688
             IDKDVAETAKNISEIALKNKKEK+GEFVDENGNPIDDKKKAEKQDETSPVKQAFIGKSDP
Sbjct  1759  IDKDVAETAKNISEIALKNKKEKNGEFVDENGNPIDDKKKAEKQDETSPVKQAFIGKSDP  1818

Query  1689  TFVLAQYTPIEITLTSKVDATLTGIVSGVVAKDVWNMNGTMILLDKGTKVYGNYQSVKGG  1748
             TFVLAQYTPIEITLTSKVDATLTGIVSGVVAKDVWNMNGTMILLDKGTKVYGNYQSVKGG
Sbjct  1819  TFVLAQYTPIEITLTSKVDATLTGIVSGVVAKDVWNMNGTMILLDKGTKVYGNYQSVKGG  1878

Query  1749  TPIMTRLMIVFTKAITPDGVIIPLANAQAAGMLGEAGVDGYVNNHFMKRIGFAVIASVVN  1808
             TPIMTRLMIVFTKAITPDGVIIPLANAQAAGMLGEAGVDGYVNNHFMKRIGFAVIASVVN
Sbjct  1879  TPIMTRLMIVFTKAITPDGVIIPLANAQAAGMLGEAGVDGYVNNHFMKRIGFAVIASVVN  1938

Query  1809  SFLQTAPIIALDKLIGLGKGRSERTPEFNYALGQAINGSMQSSAQMSNQILGQLMNIPPS  1868
             SFLQTAPIIALDKLIGLGKGRSERTPEFNYALGQAINGSMQSSAQMSNQILGQLMNIPPS
Sbjct  1939  SFLQTAPIIALDKLIGLGKGRSERTPEFNYALGQAINGSMQSSAQMSNQILGQLMNIPPS  1998

Query  1869  FYKNEGDSIKILTMDDIDFSGVYDVKITNKSVVDEIIKQSTKTLSREHEEITTSPKGGN  1927
             FYKNEGDSIKILTMDDIDFSGVYDVKITNKSVVDEIIKQSTKTLSREHEEITTSPKGGN
Sbjct  1999  FYKNEGDSIKILTMDDIDFSGVYDVKITNKSVVDEIIKQSTKTLSREHEEITTSPKGGN  2057


 Score =  244 bits (911),  Expect = 3e-65, Method: Compositional matrix adjust.
 Identities = 292/326 (90%), Positives = 308/326 (95%), Gaps = 0/326 (0%)

Query  1    MNEENDKLETSKKAQQDSPQDLSNEEATEANHFENLLKESKESSDHHLDNPTETQTHFDG  60
            MNEENDKLETSKK+QQ+SPQDLSNEEATE NHFE+  KESKESSDHHL+NPTET+T+FDG
Sbjct  1    MNEENDKLETSKKTQQHSPQDLSNEEATEINHFEDSSKESKESSDHHLNNPTETKTNFDG  60

Query  61   DKSEETQTQMDsegnetsessngsLADKLFKKARKLVDNKKPFTQQKnldeetqelneed  120
            DKSEETQTQMDS G+ETSESSNGSLADKLFKKARKLVDNK+PFTQQKNLDEETQELNEED
Sbjct  61   DKSEETQTQMDSGGDETSESSNGSLADKLFKKARKLVDNKRPFTQQKNLDEETQELNEED  120

Query  121  dqenneyqeetqtdLIDDETSKKTQQHSPQDLSNEEATEANHFENLLKESKESSDHHLDN  180
            DQENN YQEETQT+LIDDETSKKTQQHSPQDLSNEEATE NHFE+  KESKESSD  LDN
Sbjct  121  DQENNGYQEETQTGLIDDETSKKTQQHSPQDLSNEEATEINHFEDSSKESKESSDPYLDN  180

Query  181  PTETQTNFDGDKSEETQTQMDsegnetsessngsLADKLFKKARKLVDNKKPFTQQKnld  240
            PTET+TNFDGDKSEETQTQMDS G+ETSESSNGSLADKLFKKARKLVDNK+PFTQQKNLD
Sbjct  181  PTETKTNFDGDKSEETQTQMDSGGDETSESSNGSLADKLFKKARKLVDNKRPFTQQKNLD  240

Query  241  eetqelneeddqenneyqeetqtdLIDDETSKKTQQHSPQDLSNEEATEANHFENLLKES  300
            EETQELNEEDDQENN YQEETQT+LIDDETSKKTQQHSPQDLSNEEATE NHFE+  KES
Sbjct  241  EETQELNEEDDQENNGYQEETQTGLIDDETSKKTQQHSPQDLSNEEATEINHFEDSSKES  300

Query  301  KESSDHHLDNPTETQTNFDGDKSEEI  326
            KESSD  LDNPTET+TNFDGDKSEE 
Sbjct  301  KESSDPYLDNPTETKTNFDGDKSEET  326

9) HPIN_04260 in NC_017372


> JQ685140|1|G1|442739065|AGC69792.1|Helicobacter_pylori_J166_isolate_MJ166sc3|+|1..6174|cagY|-|cag 
pathogenicity island protein 
Y
Length=2057

 Score = 2024 bits (7689),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 1684/1789 (95%), Positives = 1718/1789 (97%), Gaps = 38/1789 (2%)

Query  9     ETSQKTQQHSPQDLSNEEATEANHFedsskeskessdHHLDNPTETKTHFDEYELEETQT  68
             ETS+KTQQHSPQDLSNEEATE NHFEDSSKESKESSD  LDNPTETKT+FD    EETQT
Sbjct  269   ETSKKTQQHSPQDLSNEEATEINHFEDSSKESKESSDPYLDNPTETKTNFDGDKSEETQT  328

Query  69    QIDSGGNETSESSDGSLADKLFKKARKLVDNKRPFTQQKNLDEETQELNEEDDQGNNGYQ  128
             Q+DSGG+ETSESS+GSLADKLFKKARKLVDNKRPFTQQKNLDEETQELNEEDDQ NNGYQ
Sbjct  329   QMDSGGDETSESSNGSLADKLFKKARKLVDNKRPFTQQKNLDEETQELNEEDDQENNGYQ  388

Query  129   EETQIDLIDDETSQKTQQHSPQDLSNEEATEANHFedsskeskessdHHLDNYTETEINF  188
             EETQ +LIDDETS+KTQQHSPQDLSNEEATE NHFEDSSKESKESSD  LDN TET  NF
Sbjct  389   EETQTGLIDDETSKKTQQHSPQDLSNEEATEINHFEDSSKESKESSDPYLDNPTETKTNF  448

Query  189   DGDKSEEITNDSNDQEiikgskkkyiiggivvavliviilFSRSIFHYFMPLEDKSSRFS  248
             D DKSEEITNDSNDQEIIKGSKKKYIIGGIVVAVLIVIILFSRSIFHYFMPLEDKSSRFS
Sbjct  449   DEDKSEEITNDSNDQEIIKGSKKKYIIGGIVVAVLIVIILFSRSIFHYFMPLEDKSSRFS  508

Query  249   KDRNLYVNDEIQIRQEYNRLLKERNEKGNMIDKNLFFNDDPNRTLYNYLNIAEIEDKNPL  308
             KDRNLYVNDEIQIRQEYNRLLKERNEKGNMIDKNLFFNDDPNRTLYNYLNIAEIEDKNPL
Sbjct  509   KDRNLYVNDEIQIRQEYNRLLKERNEKGNMIDKNLFFNDDPNRTLYNYLNIAEIEDKNPL  568

Query  309   RAFYECISNGGNYEEClklikdkklqdqmkktlEAYNDCIKNAKTEEERIKCLDLIKDEN  368
             RAFYECISNGGNYEECLKLIKDKKLQDQMKKTLEAYNDCIKNAKTEEERIKCLDLIKDEN
Sbjct  569   RAFYECISNGGNYEECLKLIKDKKLQDQMKKTLEAYNDCIKNAKTEEERIKCLDLIKDEN  628

Query  369   LKKSLLNQQKVQVALDCLKNAKTDEERNECLKLINDPEIREKFRKELGLQKELQEYKDCI  428
             LKKSLLNQQKVQVALDCLKNAKTDEER+ECLKLINDPEIREKFRKEL LQKELQEYKDCI
Sbjct  629   LKKSLLNQQKVQVALDCLKNAKTDEERKECLKLINDPEIREKFRKELELQKELQEYKDCI  688

Query  429   KNAKTEAEKNECLKGLSKEAIERLKQQALDCLKNAKTDEERNECLKNIPQDLQKELLADM  488
             KNAKTEAEKNECLKGLSKEAIERLKQQALDCLKNAKTDEERNECLKNIPQDLQKELLADM
Sbjct  689   KNAKTEAEKNECLKGLSKEAIERLKQQALDCLKNAKTDEERNECLKNIPQDLQKELLADM  748

Query  489   SVKAYKDCISKARNekekkecekLLTPEAKKKLEQQVLDCLKNAKTDEERKKCLKDLPKD  548
             SVKAYKDC+SKARNEKEK+ECEKLLTPEA+KKLEQQVLDCLKNAKTDEERKKCLKDLPKD
Sbjct  749   SVKAYKDCVSKARNEKEKQECEKLLTPEARKKLEQQVLDCLKNAKTDEERKKCLKDLPKD  808

Query  549   LQSDILAKESLKAYKDCVSQARTEAEKKECeklltpeakklleeeakeSVKAYLDCVSQa  608
             LQSDILAKES+KAYKDCVSQA+ EAEKKECEKLLTPEAKKLLEEEAKESVKAYLDCVSQA
Sbjct  809   LQSDILAKESVKAYKDCVSQAKNEAEKKECEKLLTPEAKKLLEEEAKESVKAYLDCVSQA  868

Query  609   kneaekkeceklltpeakkkleeakksvkaYLDCASQARTEAEKKECEKLLTPEARKLLE  668
             K EAEKKECEKLLTPEA+KKLEEAKKSVKAYLDC SQA+ E EKKECEKLLTPEARKLLE
Sbjct  869   KTEAEKKECEKLLTPEARKKLEEAKKSVKAYLDCVSQAKNEDEKKECEKLLTPEARKLLE  928

Query  669   QQALDCLKNAKTDEERKKCLKDLPKDLQKKVLAKESVKAYLDCVSQakteaekkecekll  728
             QQALDCLKNAKTDEERKKCLKDLPKDLQKKVLAKESVKAYLDCVSQAKTEAEKKECEKLL
Sbjct  929   QQALDCLKNAKTDEERKKCLKDLPKDLQKKVLAKESVKAYLDCVSQAKTEAEKKECEKLL  988

Query  729   tPEARKLLEEAKESLKAYKDCVSRARNkkekkeceklltpeakklleeeakeSVKAYLDC  788
             TPEARKLLEEAKES+KAYKDCVS+ARN KEKKECEKLLTPEAKKLLEEEAKESVKAYLDC
Sbjct  989   TPEARKLLEEAKESIKAYKDCVSKARNEKEKKECEKLLTPEAKKLLEEEAKESVKAYLDC  1048

Query  789   VSQakneaekkeceklltpeakkkleeakksvkaYLDCVSKARTEAEKKECEKLLTPEAK  848
             VSQAK EAEKKECEKLLTPEAKKKLEEAKKSVKAYLDCVS+A+ E EKKECEKLLTPEAK
Sbjct  1049  VSQAKTEAEKKECEKLLTPEAKKKLEEAKKSVKAYLDCVSQAKNEDEKKECEKLLTPEAK  1108

Query  849   KLLEQQALDCLKNAKTEADKKRCVKDLPKDLQKKVLAKESLK------------------  890
             KLLEQQALDCLKNAKTEADKKRCVKDLPKDLQKKVLAKES+K                  
Sbjct  1109  KLLEQQALDCLKNAKTEADKKRCVKDLPKDLQKKVLAKESVKAYKDCVSRARNEKEKKEC  1168

Query  891   --------------------AYKDCVSRARNekekkeceklltpeakklleeakeslkaY  930
                                 AY DCVS+A+ E EKKECEKLLTPEAKKLLEEAKESLKAY
Sbjct  1169  EKLLTPEAKKLLEEAKKSVKAYLDCVSQAKTEAEKKECEKLLTPEAKKLLEEAKESLKAY  1228

Query  931   KDCVSQARNekekkecekLLTPEAKKLLEQQALDCLKNAKTEAEKKRCVKDLPKDLQKKV  990
             KDCVS+ARNEKEKKECEKLLTPEAKKLLEQQALDCLKNAKTEA+KKRCVKDLPKDLQKKV
Sbjct  1229  KDCVSRARNEKEKKECEKLLTPEAKKLLEQQALDCLKNAKTEADKKRCVKDLPKDLQKKV  1288

Query  991   LAKESVKAYLDCVSKARNekekkeceklltpeakklleeakeslkaYKDCLSQARNEEER  1050
             LAKESVKAYLDCVS+ARNEKEKKECEKLLTPEAKKLLEEAKESLKAYKDCLSQARNEEER
Sbjct  1289  LAKESVKAYLDCVSRARNEKEKKECEKLLTPEAKKLLEEAKESLKAYKDCLSQARNEEER  1348

Query  1051  RACEKLLTPEARKLLEQEVKKSVKAYLDCVSRARNEKEKQECEKLLTPEARKFLAKQVLN  1110
             RACEKLLTPEARKLLEQEVKKSVKAYLDCVS+A+ E EK+ECEKLLTPEARKFLAKQVLN
Sbjct  1349  RACEKLLTPEARKLLEQEVKKSVKAYLDCVSQAKTEAEKKECEKLLTPEARKFLAKQVLN  1408

Query  1111  CLEKAGNEEERKACLKNLPKDLQENVLAKESLKAYKDCLSQARNEEERRACEKLLTPEAR  1170
             CLEKAGNEEERKACLKNLPKDLQENVLAKESLKAYKDCLSQARNEEERRACEKLLTPEAR
Sbjct  1409  CLEKAGNEEERKACLKNLPKDLQENVLAKESLKAYKDCLSQARNEEERRACEKLLTPEAR  1468

Query  1171  KLLEQEVKKSVKAYLDCVSKARNEKEKQECEKLLTPEARKFLAKELQQKDKAIKDCLKNA  1230
             KLLEQEVKKSVKAYLDCVS+ARNEKEK+ECEKLLTPEARKFLAKELQQKDKAIKDCLKNA
Sbjct  1469  KLLEQEVKKSVKAYLDCVSRARNEKEKKECEKLLTPEARKFLAKELQQKDKAIKDCLKNA  1528

Query  1231  DPNDRAAIMKCLDGLSDEEKLKYLQEAREKAVLDCLKTARTDEEKRKCQNLYSDLIQEIQ  1290
             DPNDRAAIMKCLDGLSDEEKLKYLQEAREKAVLDCLKTARTDEEKRKCQNLYSDLIQEIQ
Sbjct  1529  DPNDRAAIMKCLDGLSDEEKLKYLQEAREKAVLDCLKTARTDEEKRKCQNLYSDLIQEIQ  1588

Query  1291  NKRTQNKQNQLSKTERLHQASECLDNLDDPTDEQAIEQCLEGLSDSERALILGIKRQADE  1350
             NKRTQ+KQNQLSKTERLHQASECLDNLDDPTD+QAIEQCLEGLSDSERALILGIKRQADE
Sbjct  1589  NKRTQSKQNQLSKTERLHQASECLDNLDDPTDQQAIEQCLEGLSDSERALILGIKRQADE  1648

Query  1351  VDLIYSDLRNRKTFDNMAAKGYPLLPMDFKNGGDIATINATNVDADKIASDNPIYASIEP  1410
             VD IYSDLRNRKTFDNMAAKGYPLLPMDFKNGGDIATINATNVDADKIASDNPIYASIEP
Sbjct  1649  VDRIYSDLRNRKTFDNMAAKGYPLLPMDFKNGGDIATINATNVDADKIASDNPIYASIEP  1708

Query  1411  DITKQYETEKTIkdknleaklakalggnkkdddkekskksateaktesNKIDKDVAETAK  1470
             DITKQYETEKTIKDKNLEAKLAKALGGNKKDDDKEKSKKS++EAK ESNKIDKDVAETAK
Sbjct  1709  DITKQYETEKTIKDKNLEAKLAKALGGNKKDDDKEKSKKSTAEAKVESNKIDKDVAETAK  1768

Query  1471  NISEIALKNKKEKNGEFVDENGNPIDDKKKAEKQDETSPVKQAFIGKSDPTFVLAQYTPI  1530
             NISEIALKNKKEKNGEFVDENGNPIDDKKKAEKQDETSPVKQAFIGKSDPTFVLAQYTPI
Sbjct  1769  NISEIALKNKKEKNGEFVDENGNPIDDKKKAEKQDETSPVKQAFIGKSDPTFVLAQYTPI  1828

Query  1531  EITLTSKVDATLTGIVSGVVAKDVWNMNGTMILLDKGTKVYGNYQSVKGGTPIMTRLMIV  1590
             EITLTSKVDATLTGIVSGVVAKDVWNMNGTMILLDKGTKVYGNYQSVKGGTPIMTRLMIV
Sbjct  1829  EITLTSKVDATLTGIVSGVVAKDVWNMNGTMILLDKGTKVYGNYQSVKGGTPIMTRLMIV  1888

Query  1591  FTKAITPDGVIIPLANAQAAGMLGEAGVDGYVNNHFMKRIGFAVIASVVNSFLQTAPIIA  1650
             FTKAITPDGVIIPLANAQAAGMLGEAGVDGYVNNHFMKRIGFAVIASVVNSFLQTAPIIA
Sbjct  1889  FTKAITPDGVIIPLANAQAAGMLGEAGVDGYVNNHFMKRIGFAVIASVVNSFLQTAPIIA  1948

Query  1651  LDKLIGLGKGRSERTPEFNYALGQAINGSMQSSAQMSNQILGQLMNIPPSFYKNEGDSIK  1710
             LDKLIGLGKGRSERTPEFNYALGQAINGSMQSSAQMSNQILGQLMNIPPSFYKNEGDSIK
Sbjct  1949  LDKLIGLGKGRSERTPEFNYALGQAINGSMQSSAQMSNQILGQLMNIPPSFYKNEGDSIK  2008

Query  1711  ILTMDDIDFSGVYDVKITNKSVVDEIIKQSTKTLSREHEEITTSPKGGN  1759
             ILTMDDIDFSGVYDVKITNKSVVDEIIKQSTKTLSREHEEITTSPKGGN
Sbjct  2009  ILTMDDIDFSGVYDVKITNKSVVDEIIKQSTKTLSREHEEITTSPKGGN  2057


 Score =  199 bits (739),  Expect = 1e-51, Method: Compositional matrix adjust.
 Identities = 174/199 (88%), Positives = 183/199 (92%), Gaps = 0/199 (0%)

Query  1    MNEENDKLETSQKTQQHSPQDLSNEEATEANHFedsskeskessdHHLDNPTETKTHFDE  60
            MNEENDKLETS+KTQQHSPQDLSNEEATE NHFEDSSKESKESSDHHL+NPTETKT+FD 
Sbjct  1    MNEENDKLETSKKTQQHSPQDLSNEEATEINHFEDSSKESKESSDHHLNNPTETKTNFDG  60

Query  61   YELEETQTQIDSGGNETSESSDGSLADKLFKKARKLVDNKRPFTQQKNLDEETQELNEED  120
               EETQTQ+DSGG+ETSESS+GSLADKLFKKARKLVDNKRPFTQQKNLDEETQELNEED
Sbjct  61   DKSEETQTQMDSGGDETSESSNGSLADKLFKKARKLVDNKRPFTQQKNLDEETQELNEED  120

Query  121  DQGNNGYQEETQIDLIDDETSQKTQQHSPQDLSNEEATEANHFedsskeskessdHHLDN  180
            DQ NNGYQEETQ +LIDDETS+KTQQHSPQDLSNEEATE NHFEDSSKESKESSD  LDN
Sbjct  121  DQENNGYQEETQTGLIDDETSKKTQQHSPQDLSNEEATEINHFEDSSKESKESSDPYLDN  180

Query  181  YTETEINFDGDKSEEITND  199
             TET  NFDGDKSEE   +
Sbjct  181  PTETKTNFDGDKSEETQTQ  199


 Score =  183 bits (680),  Expect = 5e-47, Method: Compositional matrix adjust.
 Identities = 165/191 (87%), Positives = 173/191 (91%), Gaps = 0/191 (0%)

Query  9    ETSQKTQQHSPQDLSNEEATEANHFedsskeskessdHHLDNPTETKTHFDEYELEETQT  68
            ETS+KTQQHSPQDLSNEEATE NHFEDSSKESKESSD  LDNPTETKT+FD    EETQT
Sbjct  139  ETSKKTQQHSPQDLSNEEATEINHFEDSSKESKESSDPYLDNPTETKTNFDGDKSEETQT  198

Query  69   QIDSGGNETSESSDGSLADKLFKKARKLVDNKRPFTQQKNLDEETQELNEEDDQGNNGYQ  128
            Q+DSGG+ETSESS+GSLADKLFKKARKLVDNKRPFTQQKNLDEETQELNEEDDQ NNGYQ
Sbjct  199  QMDSGGDETSESSNGSLADKLFKKARKLVDNKRPFTQQKNLDEETQELNEEDDQENNGYQ  258

Query  129  EETQIDLIDDETSQKTQQHSPQDLSNEEATEANHFedsskeskessdHHLDNYTETEINF  188
            EETQ +LIDDETS+KTQQHSPQDLSNEEATE NHFEDSSKESKESSD  LDN TET  NF
Sbjct  259  EETQTGLIDDETSKKTQQHSPQDLSNEEATEINHFEDSSKESKESSDPYLDNPTETKTNF  318

Query  189  DGDKSEEITND  199
            DGDKSEE   +
Sbjct  319  DGDKSEETQTQ  329

10) HPSNT_02715 in NC_017376


> JQ685140|1|G1|442739065|AGC69792.1|Helicobacter_pylori_J166_isolate_MJ166sc3|+|1..6174|cagY|-|cag 
pathogenicity island protein 
Y
Length=2057

 Score = 2013 bits (7647),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 1716/1789 (96%), Positives = 1762/1789 (99%), Gaps = 0/1789 (0%)

Query  9     ETSQKTQQHSPQDLSNEEATEVNRFedsskeseensdHHLDNPTETKTNFDEYESEETQT  68
             ETS+KTQQHSPQDLSNEEATE+N+FEDSSKES E+SD  LDNPTETKTNFD   SEETQT
Sbjct  269   ETSKKTQQHSPQDLSNEEATEINHFEDSSKESKESSDPYLDNPTETKTNFDGDKSEETQT  328

Query  69    QMDSGGNETSESSHGSLADKLFKKARKLVDNKKPFTQQKnldeetqelneeddqennGYQ  128
             QMDSGG+ETSESS+GSLADKLFKKARKLVDNK+PFTQQKNLDEETQELNEEDDQENNGYQ
Sbjct  329   QMDSGGDETSESSNGSLADKLFKKARKLVDNKRPFTQQKNLDEETQELNEEDDQENNGYQ  388

Query  129   EETQIDLIDDETSQKTQQHSPQDLSNEEATEVNRFedsskeseensdHHLDNPTETKTNF  188
             EETQ +LIDDETS+KTQQHSPQDLSNEEATE+N+FEDSSKES E+SD  LDNPTETKTNF
Sbjct  389   EETQTGLIDDETSKKTQQHSPQDLSNEEATEINHFEDSSKESKESSDPYLDNPTETKTNF  448

Query  189   DEYKSEEITNDSNDQEiikgskkkyiiggivvavliviilFSRSIFHYFMPLEDKSSRFS  248
             DE KSEEITNDSNDQEIIKGSKKKYIIGGIVVAVLIVIILFSRSIFHYFMPLEDKSSRFS
Sbjct  449   DEDKSEEITNDSNDQEIIKGSKKKYIIGGIVVAVLIVIILFSRSIFHYFMPLEDKSSRFS  508

Query  249   KDRNLYVNDEIKIRQEYNRLLKERNEKGNMIDKNLFFNDDPNRTLYNYLNIAEIEDKNPL  308
             KDRNLYVNDEI+IRQEYNRLLKERNEKGNMIDKNLFFNDDPNRTLYNYLNIAEIEDKNPL
Sbjct  509   KDRNLYVNDEIQIRQEYNRLLKERNEKGNMIDKNLFFNDDPNRTLYNYLNIAEIEDKNPL  568

Query  309   KAFYECISNGGNYEEClklikdkklqdqmkktlEAYNDCIKNAKTEEERIKCLDLIKDEN  368
             +AFYECISNGGNYEECLKLIKDKKLQDQMKKTLEAYNDCIKNAKTEEERIKCLDLIKDEN
Sbjct  569   RAFYECISNGGNYEECLKLIKDKKLQDQMKKTLEAYNDCIKNAKTEEERIKCLDLIKDEN  628

Query  369   LKKSLLNQQKVQVALDCLKNAKTDEERNECLKLINDPEIREKFRKELGLQKELQEYKDCI  428
             LKKSLLNQQKVQVALDCLKNAKTDEER+ECLKLINDPEIREKFRKEL LQKELQEYKDCI
Sbjct  629   LKKSLLNQQKVQVALDCLKNAKTDEERKECLKLINDPEIREKFRKELELQKELQEYKDCI  688

Query  429   KNAKTEAEKNECLKGLSKEAIERLKQQALDCLKNAKTDEERNECLKNIPQDLQKELLADM  488
             KNAKTEAEKNECLKGLSKEAIERLKQQALDCLKNAKTDEERNECLKNIPQDLQKELLADM
Sbjct  689   KNAKTEAEKNECLKGLSKEAIERLKQQALDCLKNAKTDEERNECLKNIPQDLQKELLADM  748

Query  489   SVKAYKDCVSKARNekekkecekLLTPEAKKKLEQQVLDCLKNAKTDEERKKCLKDLPKD  548
             SVKAYKDCVSKARNEKEK+ECEKLLTPEA+KKLEQQVLDCLKNAKTDEERKKCLKDLPKD
Sbjct  749   SVKAYKDCVSKARNEKEKQECEKLLTPEARKKLEQQVLDCLKNAKTDEERKKCLKDLPKD  808

Query  549   LQSDILAKESLKAYKDCVSQakteaekkeceklltpeakklleeeakeSVKAYLDCVSQa  608
             LQSDILAKES+KAYKDCVSQAK EAEKKECEKLLTPEAKKLLEEEAKESVKAYLDCVSQA
Sbjct  809   LQSDILAKESVKAYKDCVSQAKNEAEKKECEKLLTPEAKKLLEEEAKESVKAYLDCVSQA  868

Query  609   kneaekkeceklltpeakkkleeakksvkaYLDCVSQARTEAEKKECEKLLTPEAKKLLE  668
             K EAEKKECEKLLTPEA+KKLEEAKKSVKAYLDCVSQA+ E EKKECEKLLTPEA+KLLE
Sbjct  869   KTEAEKKECEKLLTPEARKKLEEAKKSVKAYLDCVSQAKNEDEKKECEKLLTPEARKLLE  928

Query  669   QQALDCLKNAKTEADKKRCVKDLPKDLQKKVLAKESVKAYLDCVSQakteaekkecekll  728
             QQALDCLKNAKT+ ++K+C+KDLPKDLQKKVLAKESVKAYLDCVSQAKTEAEKKECEKLL
Sbjct  929   QQALDCLKNAKTDEERKKCLKDLPKDLQKKVLAKESVKAYLDCVSQAKTEAEKKECEKLL  988

Query  729   tPEARKLLEEAKESVKAYKDCVSRARNekekkecekLLTPearklleeeakeSVKAYLDC  788
             TPEARKLLEEAKES+KAYKDCVS+ARNEKEKKECEKLLTPEA+KLLEEEAKESVKAYLDC
Sbjct  989   TPEARKLLEEAKESIKAYKDCVSKARNEKEKKECEKLLTPEAKKLLEEEAKESVKAYLDC  1048

Query  789   VSQakteaekkeceklltpeakkkleeakksakaylDCVSQakteaekkeceklltPEAR  848
             VSQAKTEAEKKECEKLLTPEAKKKLEEAKKS KAYLDCVSQAK E EKKECEKLLTPEA+
Sbjct  1049  VSQAKTEAEKKECEKLLTPEAKKKLEEAKKSVKAYLDCVSQAKNEDEKKECEKLLTPEAK  1108

Query  849   KLLEQQALDCLKNAKTEAEKKRCVKDLPKDLQKKVLAKESLKAYKDCVSRARNekekkec  908
             KLLEQQALDCLKNAKTEA+KKRCVKDLPKDLQKKVLAKES+KAYKDCVSRARNEKEKKEC
Sbjct  1109  KLLEQQALDCLKNAKTEADKKRCVKDLPKDLQKKVLAKESVKAYKDCVSRARNEKEKKEC  1168

Query  909   eklltpeakklleeakksvkaYLDCVSQakteaekkeceklltPEARKLLEEAKESLKAY  968
             EKLLTPEAKKLLEEAKKSVKAYLDCVSQAKTEAEKKECEKLLTPEA+KLLEEAKESLKAY
Sbjct  1169  EKLLTPEAKKLLEEAKKSVKAYLDCVSQAKTEAEKKECEKLLTPEAKKLLEEAKESLKAY  1228

Query  969   KDCVSRARNekekkecekLLTPEAKKLLEQQALDCLKNAKTDAEKKRCAKDLPKDLQKKV  1028
             KDCVSRARNEKEKKECEKLLTPEAKKLLEQQALDCLKNAKT+A+KKRC KDLPKDLQKKV
Sbjct  1229  KDCVSRARNEKEKKECEKLLTPEAKKLLEQQALDCLKNAKTEADKKRCVKDLPKDLQKKV  1288

Query  1029  LAKESVKAYLDCVSRARNEKERKACeklltpeakklleeakeslkaYKDCLSQARNEEER  1088
             LAKESVKAYLDCVSRARNEKE+K CEKLLTPEAKKLLEEAKESLKAYKDCLSQARNEEER
Sbjct  1289  LAKESVKAYLDCVSRARNEKEKKECEKLLTPEAKKLLEEAKESLKAYKDCLSQARNEEER  1348

Query  1089  RACEKLLTPEARKLLEQEVKNSVKAYLDCVSRARNEKEKQECEKLLTPEARKFLAKQVLS  1148
             RACEKLLTPEARKLLEQEVK+SVKAYLDCVS+A+ E EK+ECEKLLTPEARKFLAKQVL+
Sbjct  1349  RACEKLLTPEARKLLEQEVKKSVKAYLDCVSQAKTEAEKKECEKLLTPEARKFLAKQVLN  1408

Query  1149  CLEKAKNEEERKACLKNLPKDLQENVLAKESLKAYKDCLSQARNEEERRACEKLLTPEAR  1208
             CLEKA NEEERKACLKNLPKDLQENVLAKESLKAYKDCLSQARNEEERRACEKLLTPEAR
Sbjct  1409  CLEKAGNEEERKACLKNLPKDLQENVLAKESLKAYKDCLSQARNEEERRACEKLLTPEAR  1468

Query  1209  KLLEQEVKNSVKAYLDCVSRARNEKEKQECEKLLTPEARKFLAKELQQKDKAIKDCLKNA  1268
             KLLEQEVK+SVKAYLDCVSRARNEKEK+ECEKLLTPEARKFLAKELQQKDKAIKDCLKNA
Sbjct  1469  KLLEQEVKKSVKAYLDCVSRARNEKEKKECEKLLTPEARKFLAKELQQKDKAIKDCLKNA  1528

Query  1269  DPNDRAAIMKCLDGLSDEEKLKYLQEAREKAVLDCLKTARTDEEKRKCQNLYSDLIQEIQ  1328
             DPNDRAAIMKCLDGLSDEEKLKYLQEAREKAVLDCLKTARTDEEKRKCQNLYSDLIQEIQ
Sbjct  1529  DPNDRAAIMKCLDGLSDEEKLKYLQEAREKAVLDCLKTARTDEEKRKCQNLYSDLIQEIQ  1588

Query  1329  NKRTQNKQNQLSKTERLHQASECLDNLDDPTDQQAIEQCLEGLSDSERALILGIKRQADE  1388
             NKRTQ+KQNQLSKTERLHQASECLDNLDDPTDQQAIEQCLEGLSDSERALILGIKRQADE
Sbjct  1589  NKRTQSKQNQLSKTERLHQASECLDNLDDPTDQQAIEQCLEGLSDSERALILGIKRQADE  1648

Query  1389  VDLIYSDLRNRKTFDNMAAKGYPLLPMDFKNGGDIATINATNVDADKIASDNPIYASIEP  1448
             VD IYSDLRNRKTFDNMAAKGYPLLPMDFKNGGDIATINATNVDADKIASDNPIYASIEP
Sbjct  1649  VDRIYSDLRNRKTFDNMAAKGYPLLPMDFKNGGDIATINATNVDADKIASDNPIYASIEP  1708

Query  1449  DITKQYETEKTIkdknleaklakalggnkkdddkekskkstaeakaesNKIDKDVAETAK  1508
             DITKQYETEKTIKDKNLEAKLAKALGGNKKDDDKEKSKKSTAEAK ESNKIDKDVAETAK
Sbjct  1709  DITKQYETEKTIKDKNLEAKLAKALGGNKKDDDKEKSKKSTAEAKVESNKIDKDVAETAK  1768

Query  1509  NISEIALKNKKEKSGEFVDENGNPIDDKKKAEKQDETSPVKQAFIGKSDPTFVLAQYTPI  1568
             NISEIALKNKKEK+GEFVDENGNPIDDKKKAEKQDETSPVKQAFIGKSDPTFVLAQYTPI
Sbjct  1769  NISEIALKNKKEKNGEFVDENGNPIDDKKKAEKQDETSPVKQAFIGKSDPTFVLAQYTPI  1828

Query  1569  EITLTSKVDATLTGIVSGVVAKDVWNMNGTMILLDKGTKVYGNYQSVKGGTPIMTRLMIV  1628
             EITLTSKVDATLTGIVSGVVAKDVWNMNGTMILLDKGTKVYGNYQSVKGGTPIMTRLMIV
Sbjct  1829  EITLTSKVDATLTGIVSGVVAKDVWNMNGTMILLDKGTKVYGNYQSVKGGTPIMTRLMIV  1888

Query  1629  FTKAITPDGVIIPLANAQAAGMLGEAGVDGYVNNHFMKRIGFAVIASVVNSFLQTAPIIA  1688
             FTKAITPDGVIIPLANAQAAGMLGEAGVDGYVNNHFMKRIGFAVIASVVNSFLQTAPIIA
Sbjct  1889  FTKAITPDGVIIPLANAQAAGMLGEAGVDGYVNNHFMKRIGFAVIASVVNSFLQTAPIIA  1948

Query  1689  LDKLIGLGKGRSERTPEFNYALGQAINGSMQSSAHMSNQILGQLMNIPPSFYKNEGDSIK  1748
             LDKLIGLGKGRSERTPEFNYALGQAINGSMQSSA+MSNQILGQLMNIPPSFYKNEGDSIK
Sbjct  1949  LDKLIGLGKGRSERTPEFNYALGQAINGSMQSSAQMSNQILGQLMNIPPSFYKNEGDSIK  2008

Query  1749  ILTMDDIDFSGVYDVKITNKSVVDEIIKQSTKTLSREHEEITTSPKGGN  1797
             ILTMDDIDFSGVYDVKITNKSVVDEIIKQSTKTLSREHEEITTSPKGGN
Sbjct  2009  ILTMDDIDFSGVYDVKITNKSVVDEIIKQSTKTLSREHEEITTSPKGGN  2057


 Score =  178 bits (659),  Expect = 3e-45, Method: Compositional matrix adjust.
 Identities = 172/199 (87%), Positives = 186/199 (94%), Gaps = 0/199 (0%)

Query  1    MNEENDKLETSQKTQQHSPQDLSNEEATEVNRFedsskeseensdHHLDNPTETKTNFDE  60
            MNEENDKLETS+KTQQHSPQDLSNEEATE+N+FEDSSKES E+SDHHL+NPTETKTNFD 
Sbjct  1    MNEENDKLETSKKTQQHSPQDLSNEEATEINHFEDSSKESKESSDHHLNNPTETKTNFDG  60

Query  61   YESEETQTQMDSGGNETSESSHGSLADKLFKKARKLVDNKKPFTQQKnldeetqelneed  120
              SEETQTQMDSGG+ETSESS+GSLADKLFKKARKLVDNK+PFTQQKNLDEETQELNEED
Sbjct  61   DKSEETQTQMDSGGDETSESSNGSLADKLFKKARKLVDNKRPFTQQKNLDEETQELNEED  120

Query  121  dqennGYQEETQIDLIDDETSQKTQQHSPQDLSNEEATEVNRFedsskeseensdHHLDN  180
            DQENNGYQEETQ +LIDDETS+KTQQHSPQDLSNEEATE+N+FEDSSKES E+SD  LDN
Sbjct  121  DQENNGYQEETQTGLIDDETSKKTQQHSPQDLSNEEATEINHFEDSSKESKESSDPYLDN  180

Query  181  PTETKTNFDEYKSEEITND  199
            PTETKTNFD  KSEE   +
Sbjct  181  PTETKTNFDGDKSEETQTQ  199


 Score =  162 bits (600),  Expect = 1e-40, Method: Compositional matrix adjust.
 Identities = 163/191 (86%), Positives = 176/191 (93%), Gaps = 0/191 (0%)

Query  9    ETSQKTQQHSPQDLSNEEATEVNRFedsskeseensdHHLDNPTETKTNFDEYESEETQT  68
            ETS+KTQQHSPQDLSNEEATE+N+FEDSSKES E+SD  LDNPTETKTNFD   SEETQT
Sbjct  139  ETSKKTQQHSPQDLSNEEATEINHFEDSSKESKESSDPYLDNPTETKTNFDGDKSEETQT  198

Query  69   QMDSGGNETSESSHGSLADKLFKKARKLVDNKKPFTQQKnldeetqelneeddqennGYQ  128
            QMDSGG+ETSESS+GSLADKLFKKARKLVDNK+PFTQQKNLDEETQELNEEDDQENNGYQ
Sbjct  199  QMDSGGDETSESSNGSLADKLFKKARKLVDNKRPFTQQKNLDEETQELNEEDDQENNGYQ  258

Query  129  EETQIDLIDDETSQKTQQHSPQDLSNEEATEVNRFedsskeseensdHHLDNPTETKTNF  188
            EETQ +LIDDETS+KTQQHSPQDLSNEEATE+N+FEDSSKES E+SD  LDNPTETKTNF
Sbjct  259  EETQTGLIDDETSKKTQQHSPQDLSNEEATEINHFEDSSKESKESSDPYLDNPTETKTNF  318

Query  189  DEYKSEEITND  199
            D  KSEE   +
Sbjct  319  DGDKSEETQTQ  329

11) HPPN120_02565 in NC_017378


> JQ685140|1|G1|442739065|AGC69792.1|Helicobacter_pylori_J166_isolate_MJ166sc3|+|1..6174|cagY|-|cag 
pathogenicity island protein 
Y
Length=2057

 Score = 1977 bits (7510),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 1776/1920 (93%), Positives = 1832/1920 (96%), Gaps = 38/1920 (1%)

Query  9     ETSKKTQQHSPQDLSNEETIKANHFedsskeskessdH-LDNSTETKTNFDGEKSEETQT  67
             ETSKKTQQHSPQDLSNEE+   NHFEDSSKESKESSD  LDN+TETKTNFDG+KSEETQT
Sbjct  139   ETSKKTQQHSPQDLSNEEATEINHFEDSSKESKESSDPYLDNPTETKTNFDGDKSEETQT  198

Query  68    QMDSGDNETSESSN--LADKLFKKARKLVDNKRPFTQQKNLdeeiqepneeddqennGYQ  125
             QMDSG++ETSESSN  LADKLFKKARKLVDNKRPFTQQKNLDEE QE NEEDDQENNGYQ
Sbjct  199   QMDSGGDETSESSNGSLADKLFKKARKLVDNKRPFTQQKNLDEETQELNEEDDQENNGYQ  258

Query  126   EEIQMDLIDDETSKKTQQHSPQDLSNEETIKANHFedsskeskessdH-LDNSTETKTNF  184
             EE Q +LIDDETSKKTQQHSPQDLSNEE+   NHFEDSSKESKESSD  LDN+TETKTNF
Sbjct  259   EETQTGLIDDETSKKTQQHSPQDLSNEEATEINHFEDSSKESKESSDPYLDNPTETKTNF  318

Query  185   DGEKSEETQTQMDSGDNETSESSN--LADKLFKKARKLVDNKRPFTQQKNLdeeiqepne  242
             DG+KSEETQTQMDSG++ETSESSN  LADKLFKKARKLVDNKRPFTQQKNLDEE QE NE
Sbjct  319   DGDKSEETQTQMDSGGDETSESSNGSLADKLFKKARKLVDNKRPFTQQKNLDEETQELNE  378

Query  243   eddqennGYQEEIQMDLIDDETSKKTQQHSPQDLSNEETIKANHFedsskeskessdH-L  301
             EDDQENNGYQEE Q +LIDDETSKKTQQHSPQDLSNEE+   NHFEDSSKESKESSD  L
Sbjct  379   EDDQENNGYQEETQTGLIDDETSKKTQQHSPQDLSNEEATEINHFEDSSKESKESSDPYL  438

Query  302   DNSTETKTNFDGEKSEEITNDSNDQEiikgskkkyiiggivvavliviilFSRSIFHYFI  361
             DN+TETKTNFD +KSEEITNDSNDQEIIKGSKKKYIIGGIVVAVLIVIILFSRSIFHYF+
Sbjct  439   DNPTETKTNFDEDKSEEITNDSNDQEIIKGSKKKYIIGGIVVAVLIVIILFSRSIFHYFM  498

Query  362   PLEDKSSRFSKDRNLYVNDEIQIRQEYNRLLKERNEKGNMIDKNLFFNDDPNRTLYNYLN  421
             PLEDKSSRFSKDRNLYVNDEIQIRQEYNRLLKERNEKGNMIDKNLFFNDDPNRTLYNYLN
Sbjct  499   PLEDKSSRFSKDRNLYVNDEIQIRQEYNRLLKERNEKGNMIDKNLFFNDDPNRTLYNYLN  558

Query  422   IAEIEDKNPLRAFYECISNGGNYEEClklikdkklqdqmkktlEAYNDCIKNAKTEEERI  481
             IAEIEDKNPLRAFYECISNGGNYEECLKLIKDKKLQDQMKKTLEAYNDCIKNAKTEEERI
Sbjct  559   IAEIEDKNPLRAFYECISNGGNYEECLKLIKDKKLQDQMKKTLEAYNDCIKNAKTEEERI  618

Query  482   KCLDLIKDENLKKSLLNQQKVQVALDCLKNAKTDEERNECLKLINDPEIrekfrkelelq  541
             KCLDLIKDENLKKSLLNQQKVQVALDCLKNAKTDEER+ECLKLINDPEIREKFRKELELQ
Sbjct  619   KCLDLIKDENLKKSLLNQQKVQVALDCLKNAKTDEERKECLKLINDPEIREKFRKELELQ  678

Query  542   kelqeYKDCIKNAKTEAEKNKCLKGLSKEAIERLKQQALDCLKNAKTDEERNECLKNIPQ  601
             KELQEYKDCIKNAKTEAEKN CLKGLSKEAIERLKQQALDCLKNAKTDEERNECLKNIPQ
Sbjct  679   KELQEYKDCIKNAKTEAEKNECLKGLSKEAIERLKQQALDCLKNAKTDEERNECLKNIPQ  738

Query  602   DLQKELLADMSVKAYKDCVSKARNekekkecekLLTPEARKKLEQQVLDCLKNAKTDEER  661
             DLQKELLADMSVKAYKDCVSKARNEKEK+ECEKLLTPEARKKLEQQVLDCLKNAKTDEER
Sbjct  739   DLQKELLADMSVKAYKDCVSKARNEKEKQECEKLLTPEARKKLEQQVLDCLKNAKTDEER  798

Query  662   KKCLKDLPKDLQSDILAKESVKAYRDCVSQakteaekkeceklltpeakklleeeakeSV  721
             KKCLKDLPKDLQSDILAKESVKAY+DCVSQAK EAEKKECEKLLTPEAKKLLEEEAKESV
Sbjct  799   KKCLKDLPKDLQSDILAKESVKAYKDCVSQAKNEAEKKECEKLLTPEAKKLLEEEAKESV  858

Query  722   KAYLDCVSQakteaekkeceklltpeakkkleeakksvkaYLDCVSQakteaekkecekl  781
             KAYLDCVSQAKTEAEKKECEKLLTPEA+KKLEEAKKSVKAYLDCVSQAK E EKKECEKL
Sbjct  859   KAYLDCVSQAKTEAEKKECEKLLTPEARKKLEEAKKSVKAYLDCVSQAKNEDEKKECEKL  918

Query  782   ltPEAKKLLEQQALDCLKNAKTDEERKKCLKDLPKDLQKKVLAKESVKAYLDCVSQakte  841
             LTPEA+KLLEQQALDCLKNAKTDEERKKCLKDLPKDLQKKVLAKESVKAYLDCVSQAKTE
Sbjct  919   LTPEARKLLEQQALDCLKNAKTDEERKKCLKDLPKDLQKKVLAKESVKAYLDCVSQAKTE  978

Query  842   aekkeceklltpeakklleeakeslkaYKDCVSRARNekekkecekLLTPEARKLLEQEV  901
             AEKKECEKLLTPEA+KLLEEAKES+KAYKDCVS+ARNEKEKKECEKLLTPEA+KLLE+E 
Sbjct  979   AEKKECEKLLTPEARKLLEEAKESIKAYKDCVSKARNEKEKKECEKLLTPEAKKLLEEEA  1038

Query  902   KKSVKAYLDCVSQakteaekkeceklltpeakklleeakeslkaYKDCLSQARNEEERKA  961
             K SVKAYLDCVSQAKTEAEKKECEKLLTPEAKK LEEAK S+KAY DC+SQA+NE+E+K 
Sbjct  1039  KESVKAYLDCVSQAKTEAEKKECEKLLTPEAKKKLEEAKKSVKAYLDCVSQAKNEDEKKE  1098

Query  962   CEKLLTPeark------------------------------lleeeakeSVKAYLDCVSQ  991
             CEKLLTPEA+K                                   AKESVKAY DCVS+
Sbjct  1099  CEKLLTPEAKKLLEQQALDCLKNAKTEADKKRCVKDLPKDLQKKVLAKESVKAYKDCVSR  1158

Query  992   akteaekkeceklltPEARKKLEEAKKSVKAYLDCVSQakteaekkeceklltPEARKLL  1051
             A+ E EKKECEKLLTPEA+K LEEAKKSVKAYLDCVSQAKTEAEKKECEKLLTPEA+KLL
Sbjct  1159  ARNEKEKKECEKLLTPEAKKLLEEAKKSVKAYLDCVSQAKTEAEKKECEKLLTPEAKKLL  1218

Query  1052  EQEVKKSVKAYLDCVSRARNekekkecekLLTPEARKLLEQQALDCLKSAKTEAERKRCV  1111
             E E K S+KAY DCVSRARNEKEKKECEKLLTPEA+KLLEQQALDCLK+AKTEA++KRCV
Sbjct  1219  E-EAKESLKAYKDCVSRARNEKEKKECEKLLTPEAKKLLEQQALDCLKNAKTEADKKRCV  1277

Query  1112  KDLPKDLQKKVLAKESVKAYLDCVSRARNekekkeceklltpeakklleeakeslkaYKD  1171
             KDLPKDLQKKVLAKESVKAYLDCVSRARNEKEKKECEKLLTPEAKKLLEEAKESLKAYKD
Sbjct  1278  KDLPKDLQKKVLAKESVKAYLDCVSRARNEKEKKECEKLLTPEAKKLLEEAKESLKAYKD  1337

Query  1172  CLSQARNEEERKACEKLLTPEARKLLEQEVKNSVKAYLDCVSRARNekekkecekLLTPE  1231
             CLSQARNEEER+ACEKLLTPEARKLLEQEVK+SVKAYLDCVS+A+ E EKKECEKLLTPE
Sbjct  1338  CLSQARNEEERRACEKLLTPEARKLLEQEVKKSVKAYLDCVSQAKTEAEKKECEKLLTPE  1397

Query  1232  ARKFLAKQVLSCLEKARNEEERKACLKNIPKDLQKDVLAKESLKAYKDCLSQARNEEERK  1291
             ARKFLAKQVL+CLEKA NEEERKACLKN+PKDLQ +VLAKESLKAYKDCLSQARNEEER+
Sbjct  1398  ARKFLAKQVLNCLEKAGNEEERKACLKNLPKDLQENVLAKESLKAYKDCLSQARNEEERR  1457

Query  1292  ACEKLLTPEARKLLEQEVKKSVKAYLDCVSRARNekekkecekLLTPEARKFLAKELQQK  1351
             ACEKLLTPEARKLLEQEVKKSVKAYLDCVSRARNEKEKKECEKLLTPEARKFLAKELQQK
Sbjct  1458  ACEKLLTPEARKLLEQEVKKSVKAYLDCVSRARNEKEKKECEKLLTPEARKFLAKELQQK  1517

Query  1352  DKAIKDCLKNADPNDRVAIMKCLDGLSDEEKLKYLQEAREKAVLDCLKTARTDEEKRKCQ  1411
             DKAIKDCLKNADPNDR AIMKCLDGLSDEEKLKYLQEAREKAVLDCLKTARTDEEKRKCQ
Sbjct  1518  DKAIKDCLKNADPNDRAAIMKCLDGLSDEEKLKYLQEAREKAVLDCLKTARTDEEKRKCQ  1577

Query  1412  NLYSDLIQEIQNKRTQSKQNQLSKTERLHQASECLDNLDDPTDQEAIEQCLEGLSDSERA  1471
             NLYSDLIQEIQNKRTQSKQNQLSKTERLHQASECLDNLDDPTDQ+AIEQCLEGLSDSERA
Sbjct  1578  NLYSDLIQEIQNKRTQSKQNQLSKTERLHQASECLDNLDDPTDQQAIEQCLEGLSDSERA  1637

Query  1472  LILGIKRQADEVDLIYSDLRNRKTFDNMAAKGYPLLPMDFKNGGDIATINATNVDADKIA  1531
             LILGIKRQADEVD IYSDLRNRKTFDNMAAKGYPLLPMDFKNGGDIATINATNVDADKIA
Sbjct  1638  LILGIKRQADEVDRIYSDLRNRKTFDNMAAKGYPLLPMDFKNGGDIATINATNVDADKIA  1697

Query  1532  SDNPIYASIEPDITKQYETEKTIkdksleaklakalggdkkdddkekskkPTAEAKAESN  1591
             SDNPIYASIEPDITKQYETEKTIKDK+LEAKLAKALGG+KKDDDKEKSKK+TAEAK ESN
Sbjct  1698  SDNPIYASIEPDITKQYETEKTIKDKNLEAKLAKALGGNKKDDDKEKSKKSTAEAKVESN  1757

Query  1592  KIDKDVAETAKNISEIALKNKKEKSGDFVDENGNPIddkkktekqdetSPVKQAFIGKSD  1651
             KIDKDVAETAKNISEIALKNKKEK+G+FVDENGNPIDDKKK+EKQDETSPVKQAFIGKSD
Sbjct  1758  KIDKDVAETAKNISEIALKNKKEKNGEFVDENGNPIDDKKKAEKQDETSPVKQAFIGKSD  1817

Query  1652  PTFVLAQYTPIEITLTSKVDATLTGIVSGVVAKDVWNMNGTMILLDKGTKVYGNYQSVKG  1711
             PTFVLAQYTPIEITLTSKVDATLTGIVSGVVAKDVWNMNGTMILLDKGTKVYGNYQSVKG
Sbjct  1818  PTFVLAQYTPIEITLTSKVDATLTGIVSGVVAKDVWNMNGTMILLDKGTKVYGNYQSVKG  1877

Query  1712  GTPIMTRLMIVFTKAITPDGVIIPLANAQAAGMLGEAGVDGYVNNHFMKRIGFAVIASVV  1771
             GTPIMTRLMIVFTKAITPDGVIIPLANAQAAGMLGEAGVDGYVNNHFMKRIGFAVIASVV
Sbjct  1878  GTPIMTRLMIVFTKAITPDGVIIPLANAQAAGMLGEAGVDGYVNNHFMKRIGFAVIASVV  1937

Query  1772  NSFLQTAPIIALDKLIGLGKGRSERTPEFNYALGQAINGSMQSSAQMSNQILGQLMNIPP  1831
             NSFLQTAPIIALDKLIGLGKGRSERTPEFNYALGQAINGSMQSSAQMSNQILGQLMNIPP
Sbjct  1938  NSFLQTAPIIALDKLIGLGKGRSERTPEFNYALGQAINGSMQSSAQMSNQILGQLMNIPP  1997

Query  1832  SFYKNEGDSIKILTMDDIDFSGVYDVKITNKSVVDEIIKQSTKTLSREHEEITTSPKGGN  1891
             SFYKNEGDSIKILTMDDIDFSGVYDVKITNKSVVDEIIKQSTKTLSREHEEITTSPKGGN
Sbjct  1998  SFYKNEGDSIKILTMDDIDFSGVYDVKITNKSVVDEIIKQSTKTLSREHEEITTSPKGGN  2057


 Score =  276 bits (1031),  Expect = 1e-74, Method: Compositional matrix adjust.
 Identities = 282/329 (86%), Positives = 300/329 (92%), Gaps = 7/329 (2%)

Query  1    MNEENDKLETSKKTQQHSPQDLSNEETIKANHFedsskeskess-dHLDNSTETKTNFDG  59
            MNEENDKLETSKKTQQHSPQDLSNEE+   NHFEDSSKESKESS +HL+N+TETKTNFDG
Sbjct  1    MNEENDKLETSKKTQQHSPQDLSNEEATEINHFEDSSKESKESSDHHLNNPTETKTNFDG  60

Query  60   EKSEETQTQMDSGDNETSESSN--LADKLFKKARKLVDNKRPFTQQKNLdeeiqepneed  117
            +KSEETQTQMDSG++ETSESSN  LADKLFKKARKLVDNKRPFTQQKNLDEE QE NEED
Sbjct  61   DKSEETQTQMDSGGDETSESSNGSLADKLFKKARKLVDNKRPFTQQKNLDEETQELNEED  120

Query  118  dqennGYQEEIQMDLIDDETSKKTQQHSPQDLSNEETIKANHFedsskeskessdH-LDN  176
            DQENNGYQEE Q +LIDDETSKKTQQHSPQDLSNEE+   NHFEDSSKESKESSD  LDN
Sbjct  121  DQENNGYQEETQTGLIDDETSKKTQQHSPQDLSNEEATEINHFEDSSKESKESSDPYLDN  180

Query  177  STETKTNFDGEKSEETQTQMDSGDNETSESSN--LADKLFKKARKLVDNKRPFTQQKNLd  234
            +TETKTNFDG+KSEETQTQMDSG++ETSESSN  LADKLFKKARKLVDNKRPFTQQKNLD
Sbjct  181  PTETKTNFDGDKSEETQTQMDSGGDETSESSNGSLADKLFKKARKLVDNKRPFTQQKNLD  240

Query  235  eeiqepneeddqennGYQEEIQMDLIDDETSKKTQQHSPQDLSNEETIKANHFedsskes  294
            EE QE NEEDDQENNGYQEE Q +LIDDETSKKTQQHSPQDLSNEE+   NHFEDSSKES
Sbjct  241  EETQELNEEDDQENNGYQEETQTGLIDDETSKKTQQHSPQDLSNEEATEINHFEDSSKES  300

Query  295  kessdH-LDNSTETKTNFDGEKSEEITND  322
            KESSD  LDN+TETKTNFDG+KSEE   +
Sbjct  301  KESSDPYLDNPTETKTNFDGDKSEETQTQ  329

12) HPELS_03975 in NC_017063


> JQ685140|1|G1|442739065|AGC69792.1|Helicobacter_pylori_J166_isolate_MJ166sc3|+|1..6174|cagY|-|cag 
pathogenicity island protein 
Y
Length=2057

 Score = 1969 bits (7480),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 1675/1925 (88%), Positives = 1768/1925 (92%), Gaps = 83/1925 (4%)

Query  9     ETSKKAQQDSPQDLSNEEATEANHFEDPLKEESSDNH--LDNSTETKTQETKTHFDEDKL  66
             ETSKK+QQ+SPQDLSNEEATE NHFED+ KE    ++  LDN+TETKT     +FD DK 
Sbjct  139   ETSKKTQQHSPQDLSNEEATEINHFEDSSKESKESSDPYLDNPTETKT-----NFDGDKS  193

Query  67    EETQTQMDsggnetsessngsLADKLFKKARKLVDDKRPFTQQKSLDEEAQKLNKEDDQE  126
             EETQTQMDSGG+ETSESSNGSLADKLFKKARKLVD+KRPFTQQK+LDEE+Q LN EDDQE
Sbjct  194   EETQTQMDSGGDETSESSNGSLADKLFKKARKLVDNKRPFTQQKNLDEETQELNEEDDQE  253

Query  127   NNGYQEETQTDLIDDETSKKAQQDSPQDLSNEEATEANHFEDLLKESKESSDNHLDNPTE  186
             NNGYQEETQT+LIDDETSKK+QQ+SPQDLSNEEATE NHFED  KESKESSD  LDNPTE
Sbjct  254   NNGYQEETQTGLIDDETSKKTQQHSPQDLSNEEATEINHFEDSSKESKESSDPYLDNPTE  313

Query  187   TKTHFDKDKLEETQTQIDsggnetsessngsLADKLFKKARKLVDDKRPFTQQKSLDEEA  246
             TKT+FD DK EETQTQ+DSGG+ETSESSNGSLADKLFKKARKLVD+KRPFTQQK+LDEE+
Sbjct  314   TKTNFDGDKSEETQTQMDSGGDETSESSNGSLADKLFKKARKLVDNKRPFTQQKNLDEET  373

Query  247   QKLNKEDDQENNGYQEETQTDLIDDETSKKTQQHSPQDLSNEEATEVNHFEDSLKEESSD  306
             Q LN EDDQENNGYQEETQT+LIDDETSKKTQQHSPQDLSNEEATE+NHFEDS KE    
Sbjct  374   QELNEEDDQENNGYQEETQTGLIDDETSKKTQQHSPQDLSNEEATEINHFEDSSKESKES  433

Query  307   NH--LDNPTETKTNFDGDKSEEITNDSNDQEiikgskkkyiiggivvavliviilFSRSI  364
             ++  LDNPTETKTNFD DKSEEITNDSNDQEIIKGSKKKYIIGGIVVAVLIVIILFSRSI
Sbjct  434   SDPYLDNPTETKTNFDEDKSEEITNDSNDQEIIKGSKKKYIIGGIVVAVLIVIILFSRSI  493

Query  365   FHYFVPLEDKSSRFSKDRNLYVNDEIQIRQEYNRLLKERNEKGNMIDKNLFFNDDPNRTL  424
             FHYF+PLEDKSSRFSKDRNLYVNDEIQIRQEYNRLLKERNEKGNMIDKNLFFNDDPNRTL
Sbjct  494   FHYFMPLEDKSSRFSKDRNLYVNDEIQIRQEYNRLLKERNEKGNMIDKNLFFNDDPNRTL  553

Query  425   YNYLNIAEIEDKNPLRAFYECISNGGNYEEClklikdkklqdqmkktlEAYNDCIKNAKT  484
             YNYLNIAEIEDKNPLRAFYECISNGGNYEECLKLIKDKKLQDQMKKTLEAYNDCIKNAKT
Sbjct  554   YNYLNIAEIEDKNPLRAFYECISNGGNYEECLKLIKDKKLQDQMKKTLEAYNDCIKNAKT  613

Query  485   EEERIKCLDLIKDENLKKSLLNQQKVQVALDCLKNAKTDEERKECLKLINDPEIrekfrk  544
             EEERIKCLDLIKDENLKKSLLNQQKVQVALDCLKNAKTDEERKECLKLINDPEIREKFRK
Sbjct  614   EEERIKCLDLIKDENLKKSLLNQQKVQVALDCLKNAKTDEERKECLKLINDPEIREKFRK  673

Query  545   elelqkelqeYKDCIKNAKTEAEKNECLKGLSKEAIERLKQQALDCLKNAKTDEERNECL  604
             ELELQKELQEYKDCIKNAKTEAEKNECLKGLSKEAIERLKQQALDCLKNAKTDEERNECL
Sbjct  674   ELELQKELQEYKDCIKNAKTEAEKNECLKGLSKEAIERLKQQALDCLKNAKTDEERNECL  733

Query  605   KNIPQDLQKELLADMSVKAYKDCVSRARNekekkecekLLTPEARKKLEQQVLDCLKNAK  664
             KNIPQDLQKELLADMSVKAYKDCVS+ARNEKEK+ECEKLLTPEARKKLEQQVLDCLKNAK
Sbjct  734   KNIPQDLQKELLADMSVKAYKDCVSKARNEKEKQECEKLLTPEARKKLEQQVLDCLKNAK  793

Query  665   TDEERKKCLKDLPKDLQSDILAKESVKAYKDCVSQakteaekkeceklltpeakklleee  724
             TDEERKKCLKDLPKDLQSDILAKESVKAYKDCVSQAK EAEKKECEKLLTPEAKKLLEEE
Sbjct  794   TDEERKKCLKDLPKDLQSDILAKESVKAYKDCVSQAKNEAEKKECEKLLTPEAKKLLEEE  853

Query  725   akeSVKAYLDCVSkakneaekkeceklltpeakkkleeakksvkaYLDCVSQAKTEAEKQ  784
             AKESVKAYLDCVS+AK EAEKKECEKLLTPEA+KKLEEAKKSVKAYLDCVSQAK E EK+
Sbjct  854   AKESVKAYLDCVSQAKTEAEKKECEKLLTPEARKKLEEAKKSVKAYLDCVSQAKNEDEKK  913

Query  785   ECEKLLTPEAKKLLEQQALDCLKNAKTEAEKKRCVKDLPKDLQKKVLAKESVRVYLDCVS  844
             ECEKLLTPEA+KLLEQQALDCLKNAKT+ E+K+C+KDLPKDLQKKVLAKESV+ YLDCVS
Sbjct  914   ECEKLLTPEARKLLEQQALDCLKNAKTDEERKKCLKDLPKDLQKKVLAKESVKAYLDCVS  973

Query  845   QAKTEAERKECEKLLTPEARKLLEEAKKSVKAYKDCVSRARNekekkecekLLTPEARKL  904
             QAKTEAE+KECEKLLTPEARKLLEEAK S+KAYKDCVS+ARNEKEKKECEKLLTPEA+KL
Sbjct  974   QAKTEAEKKECEKLLTPEARKLLEEAKESIKAYKDCVSKARNEKEKKECEKLLTPEAKKL  1033

Query  905   L-EEAKKSVKAYLDCVSQakteaekkeceklltPEARKLLEEAKKSVKLFGLRISGKLSG  963
             L EEAK SVKAYLDCVSQAKTEAEKKECEKLLTPEA+K LEEAKKSVK +   +S   + 
Sbjct  1034  LEEEAKESVKAYLDCVSQAKTEAEKKECEKLLTPEAKKKLEEAKKSVKAYLDCVSQAKNE  1093

Query  964   KKRREIDS--RPEARKLLENQALDCLKNAKTEAEKKRCVKDLPKDLQKKVLAKESVRVYL  1021
               ++E +    PEA+KLLE+QALDCLKNAKTEA+KKRCVKDLPKDLQKKVLAKESV+ Y 
Sbjct  1094  DEKKECEKLLTPEAKKLLEQQALDCLKNAKTEADKKRCVKDLPKDLQKKVLAKESVKAYK  1153

Query  1022  DCVSkakteaekkeceklltPEARKLLEEAKESVKAYKDCVSRARNEKEKQECEKLLTPE  1081
             DCVS+A+ E EKKECEKLLTPEA+KLLEEAK SVKAY DCVS+A+ E EK+ECEKLLTPE
Sbjct  1154  DCVSRARNEKEKKECEKLLTPEAKKLLEEAKKSVKAYLDCVSQAKTEAEKKECEKLLTPE  1213

Query  1082  AKKLLEQEVKKSVKAYLDCVSRARNekekkecekLLTPEARKFLENQALDCLKNAKTEAE  1141
             AKKLLE E K S+KAY DCVSRARNEKEKKECEKLLTPEA+K+LE+QALDCLKNAKTEA+
Sbjct  1214  AKKLLE-EAKESLKAYKDCVSRARNEKEKKECEKLLTPEAKKLLEQQALDCLKNAKTEAD  1272

Query  1142  KKRCVKDLPKDLQKKVLAKESVKAYLDCVSRARNekekkeceklltpeakklleeakesv  1201
             KKRCVKDLPKDLQKKVLAKESVKAYLDCVSRARNEKEKKECEKLLTPEAKKLLEEAKES+
Sbjct  1273  KKRCVKDLPKDLQKKVLAKESVKAYLDCVSRARNEKEKKECEKLLTPEAKKLLEEAKESL  1332

Query  1202  kaYLDCVSRARNekekkecekLLTPEARKLLE-EAKESLKAYKDCLSQARNETERRACEK  1260
             KAY DC+S+ARNE E++ CEKLLTPEARKLLE E K S+KAY DC+SQA+ E+E++ CEK
Sbjct  1333  KAYKDCLSQARNEEERRACEKLLTPEARKLLEQEVKKSVKAYLDCVSQAKTEAEKKECEK  1392

Query  1261  LLTPEARKLLEQEV------------------------------KKSVKAYLDCVSRARN  1290
             LLTPEARK+L ++V                              K S+KAY DC+S+ARN
Sbjct  1393  LLTPEARKFLAKQVLNCLEKAGNEEERKACLKNLPKDLQENVLAKESLKAYKDCLSQARN  1452

Query  1291  EKEKQECEKL---------------------------------------LTPEARKFLEK  1311
             E E++ CEKL                                       LTPEARKFL K
Sbjct  1453  EEERRACEKLLTPEARKLLEQEVKKSVKAYLDCVSRARNEKEKKECEKLLTPEARKFLAK  1512

Query  1312  ELQQKDKAIKDCLKNADPNDRAAIMKCLDGLSDEEKLKYLQEAREKAVLDCLKTARTDEE  1371
             ELQQKDKAIKDCLKNADPNDRAAIMKCLDGLSDEEKLKYLQEAREKAVLDCLKTARTDEE
Sbjct  1513  ELQQKDKAIKDCLKNADPNDRAAIMKCLDGLSDEEKLKYLQEAREKAVLDCLKTARTDEE  1572

Query  1372  KRKCQNLYSDLIQEIqnkkaqnkqnqLSKTERLHQASECLDNLDDPTDQEAIEQCLEGLS  1431
             KRKCQNLYSDLIQEIQNK++Q+KQNQLSKTERLHQASECLDNLDDPTDQ+AIEQCLEGLS
Sbjct  1573  KRKCQNLYSDLIQEIQNKRTQSKQNQLSKTERLHQASECLDNLDDPTDQQAIEQCLEGLS  1632

Query  1432  DSERALILGIKRQADEVDRIYSDLRSRKTFDNMAAKGYPLLPMDFKNGGDIATINATNVD  1491
             DSERALILGIKRQADEVDRIYSDLR+RKTFDNMAAKGYPLLPMDFKNGGDIATINATNVD
Sbjct  1633  DSERALILGIKRQADEVDRIYSDLRNRKTFDNMAAKGYPLLPMDFKNGGDIATINATNVD  1692

Query  1492  ADKIASDNPIYASIEPDITKQYETEKTIkdksleaklakalggdkkdddkekskkPTTET  1551
             ADKIASDNPIYASIEPDITKQYETEKTIKDK+LEAKLAKALGG+KKDDDKEKSKK+T+E+
Sbjct  1693  ADKIASDNPIYASIEPDITKQYETEKTIKDKNLEAKLAKALGGNKKDDDKEKSKKSTAEA  1752

Query  1552  KAESNKIDKDVAETAKNISEIALKNKKEKSGDFVDENGNPIddkkkeekqdeTSPVKQAF  1611
             K ESNKIDKDVAETAKNISEIALKNKKEK+G+FVDENGNPIDDKKK EKQDETSPVKQAF
Sbjct  1753  KVESNKIDKDVAETAKNISEIALKNKKEKNGEFVDENGNPIDDKKKAEKQDETSPVKQAF  1812

Query  1612  IGKSDPTFVLAQYTPIEITLTSKVDATLTGIVSGVVAKDVWNMNGTMILLDKGTKVYGNY  1671
             IGKSDPTFVLAQYTPIEITLTSKVDATLTGIVSGVVAKDVWNMNGTMILLDKGTKVYGNY
Sbjct  1813  IGKSDPTFVLAQYTPIEITLTSKVDATLTGIVSGVVAKDVWNMNGTMILLDKGTKVYGNY  1872

Query  1672  QSVKGGTPIMTRLMIVFTKAITPDGVIIPLANAQAAGMLGEAGVDGYVNNHFMKRIGFAV  1731
             QSVKGGTPIMTRLMIVFTKAITPDGVIIPLANAQAAGMLGEAGVDGYVNNHFMKRIGFAV
Sbjct  1873  QSVKGGTPIMTRLMIVFTKAITPDGVIIPLANAQAAGMLGEAGVDGYVNNHFMKRIGFAV  1932

Query  1732  IASVVNSFLQTAPIIALDKLIGLGKGRSERTPEFNYALGQAINGSMQSSAQMSNQILGQL  1791
             IASVVNSFLQTAPIIALDKLIGLGKGRSERTPEFNYALGQAINGSMQSSAQMSNQILGQL
Sbjct  1933  IASVVNSFLQTAPIIALDKLIGLGKGRSERTPEFNYALGQAINGSMQSSAQMSNQILGQL  1992

Query  1792  MNIPPSFYKNEGDSIKILTMDDIDFSGVYDVKITNKSVVDEIIKQSTKTLSREHEEITTS  1851
             MNIPPSFYKNEGDSIKILTMDDIDFSGVYDVKITNKSVVDEIIKQSTKTLSREHEEITTS
Sbjct  1993  MNIPPSFYKNEGDSIKILTMDDIDFSGVYDVKITNKSVVDEIIKQSTKTLSREHEEITTS  2052

Query  1852  PKGGN  1856
             PKGGN
Sbjct  2053  PKGGN  2057


 Score =  298 bits (1117),  Expect = 2e-81, Method: Compositional matrix adjust.
 Identities = 273/334 (82%), Positives = 298/334 (90%), Gaps = 9/334 (2%)

Query  1    MNEENDKLETSKKAQQDSPQDLSNEEATEANHFEDPLKEESSD--NHLDNSTETKTQETK  58
            MNEENDKLETSKK+QQ+SPQDLSNEEATE NHFED+ KE      +HL+N+TETKT    
Sbjct  1    MNEENDKLETSKKTQQHSPQDLSNEEATEINHFEDSSKESKESSDHHLNNPTETKT----  56

Query  59   THFDEDKLEETQTQMDsggnetsessngsLADKLFKKARKLVDDKRPFTQQKSLDEEAQK  118
             +FD DK EETQTQMDSGG+ETSESSNGSLADKLFKKARKLVD+KRPFTQQK+LDEE+Q 
Sbjct  57   -NFDGDKSEETQTQMDSGGDETSESSNGSLADKLFKKARKLVDNKRPFTQQKNLDEETQE  115

Query  119  LNKEDDQENNGYQEETQTDLIDDETSKKAQQDSPQDLSNEEATEANHFEDLLKESKESSD  178
            LN EDDQENNGYQEETQT+LIDDETSKK+QQ+SPQDLSNEEATE NHFED  KESKESSD
Sbjct  116  LNEEDDQENNGYQEETQTGLIDDETSKKTQQHSPQDLSNEEATEINHFEDSSKESKESSD  175

Query  179  NHLDNPTETKTHFDKDKLEETQTQIDsggnetsessngsLADKLFKKARKLVDDKRPFTQ  238
              LDNPTETKT+FD DK EETQTQ+DSGG+ETSESSNGSLADKLFKKARKLVD+KRPFTQ
Sbjct  176  PYLDNPTETKTNFDGDKSEETQTQMDSGGDETSESSNGSLADKLFKKARKLVDNKRPFTQ  235

Query  239  QKSLDEEAQKLNKEDDQENNGYQEETQTDLIDDETSKKTQQHSPQDLSNEEATEVNHFED  298
            QK+LDEE+Q LN EDDQENNGYQEETQT+LIDDETSKKTQQHSPQDLSNEEATE+NHFED
Sbjct  236  QKNLDEETQELNEEDDQENNGYQEETQTGLIDDETSKKTQQHSPQDLSNEEATEINHFED  295

Query  299  SLKEESSDNH--LDNPTETKTNFDGDKSEEITND  330
            S KE    ++  LDNPTETKTNFDGDKSEE   +
Sbjct  296  SSKESKESSDPYLDNPTETKTNFDGDKSEETQTQ  329

13) HPSH169_02700 in NC_017740


> JQ685140|1|G1|442739065|AGC69792.1|Helicobacter_pylori_J166_isolate_MJ166sc3|+|1..6174|cagY|-|cag 
pathogenicity island protein 
Y
Length=2057

 Score = 1959 bits (7444),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 1691/1922 (88%), Positives = 1763/1922 (92%), Gaps = 86/1922 (4%)

Query  9     ETSKKTQQHSPQDLSNEETTKANRFedsskeskessdHHLDNSTETKTNFDEEKSEETQT  68
             ETSKKTQQHSPQDLSNEE+T  N+FEDSSKESKESSD  LDN+TETKTNFD +KSEETQT
Sbjct  139   ETSKKTQQHSPQDLSNEEATEINHFEDSSKESKESSDPYLDNPTETKTNFDGDKSEETQT  198

Query  69    QMDSGGNETSESSN--LADKLFKKARKLVDNKRPFTQQKNLdeeiqepneeddqennGYQ  126
             QMDSGG+ETSESSN  LADKLFKKARKLVDNKRPFTQQKNLDEE QE NEEDDQENNGYQ
Sbjct  199   QMDSGGDETSESSNGSLADKLFKKARKLVDNKRPFTQQKNLDEETQELNEEDDQENNGYQ  258

Query  127   EETQMDLIDDETSKKTQQHSPQDLSNEETIKANHFedsskesnessdHHLDNSTETKTNF  186
             EETQ +LIDDETSKKTQQHSPQDLSNEE+   NHFEDSSKES+ESSD  LDN+TETKTNF
Sbjct  259   EETQTGLIDDETSKKTQQHSPQDLSNEEATEINHFEDSSKESKESSDPYLDNPTETKTNF  318

Query  187   DEYKSEETQTQMDSGGNETSESSN--LADKLFKKARKLVDNKRPFTQQKNLdeeiqepne  244
             D  KSEETQTQMDSGG+ETSESSN  LADKLFKKARKLVDNKRPFTQQKNLDEE QE NE
Sbjct  319   DGDKSEETQTQMDSGGDETSESSNGSLADKLFKKARKLVDNKRPFTQQKNLDEETQELNE  378

Query  245   eddqennGYQEETQMDLIDDETSKKTQQHSPQDLSNEETIKANHFedsskeskkssdHHL  304
             EDDQENNGYQEETQ +LIDDETSKKTQQHSPQDLSNEE+   NHFEDSSKESK SSD  L
Sbjct  379   EDDQENNGYQEETQTGLIDDETSKKTQQHSPQDLSNEEATEINHFEDSSKESKESSDPYL  438

Query  305   DNYTETKANFDEYKSEEITNDSNDQEiikgskkkyiiggivvavliviilFSRSIFHYFI  364
             DN TETK+NFDE KSEEITNDSNDQEIIKGSKKKYIIGGIVVAVLIVIILFSRSIFHYF+
Sbjct  439   DNPTETKTNFDEDKSEEITNDSNDQEIIKGSKKKYIIGGIVVAVLIVIILFSRSIFHYFM  498

Query  365   PLEDKSSRFSKDRNLYVNDEIQIRQEYNRLLKERNEKGNMIDKNLFFNDDPNRTLYNYLN  424
             PLEDKSSRFSKDRNLYVNDEIQIRQEYNRLLKERNEKGNMIDKNLFFNDDPNRTLYNYLN
Sbjct  499   PLEDKSSRFSKDRNLYVNDEIQIRQEYNRLLKERNEKGNMIDKNLFFNDDPNRTLYNYLN  558

Query  425   IAEIEDKNPLRAFYECISNGGNYEEClklikdkklqdqmkktlEAYNDCIKNAKTEEERI  484
             IAEIEDKNPLRAFYECISNGGNYEECLKLIKDKKLQDQMKKTLEAYNDCIKNAKTEEERI
Sbjct  559   IAEIEDKNPLRAFYECISNGGNYEECLKLIKDKKLQDQMKKTLEAYNDCIKNAKTEEERI  618

Query  485   KCLDLIKDENLKKSLLNQQKVQVALDCLKNAKTDEERNECLKLINDPEIrekfrkelelq  544
             KCLDLIKDENLKKSLLNQQKVQVALDCLKNAKTDEER+ECLKLINDPEIREKFRKELELQ
Sbjct  619   KCLDLIKDENLKKSLLNQQKVQVALDCLKNAKTDEERKECLKLINDPEIREKFRKELELQ  678

Query  545   kelqeYKDCIKNAKTEAEKNKCLKGLSKEAIERLKQQALDCLKNAKTDEERNECLKNIPQ  604
             KELQEYKDCIKNAKTEAEKN CLKGLSKEAIERLKQQALDCLKNAKTDEERNECLKNIPQ
Sbjct  679   KELQEYKDCIKNAKTEAEKNECLKGLSKEAIERLKQQALDCLKNAKTDEERNECLKNIPQ  738

Query  605   DLQKELLADMSVKAYKDCVSKARNEEERKACEKLLTPEAKKLLERQALDCLKNAKTEAEK  664
             DLQKELLADMSVKAYKDCVSKARNE E++ CEKLLTPEA+K LE+Q LDCLKNAKT+ E+
Sbjct  739   DLQKELLADMSVKAYKDCVSKARNEKEKQECEKLLTPEARKKLEQQVLDCLKNAKTDEER  798

Query  665   KRCVKDLPKDLQSDILAKESVKAYRD----------------------------------  690
             K+C+KDLPKDLQSDILAKESVKAY+D                                  
Sbjct  799   KKCLKDLPKDLQSDILAKESVKAYKDCVSQAKNEAEKKECEKLLTPEAKKLLEEEAKESV  858

Query  691   -----CVSQARTEAEKKECeklltpeakklleeeakeSVKAYLDCVSQAktetekkecek  745
                  CVSQA+TEAEKKECEKLLTPEA+K LEE  K SVKAYLDCVSQAK E EKKECEK
Sbjct  859   KAYLDCVSQAKTEAEKKECEKLLTPEARKKLEEAKK-SVKAYLDCVSQAKNEDEKKECEK  917

Query  746   lltPEARKKLEE-------------------------------AKKSVKAYLDCVSQAkt  774
             LLTPEARK LE+                               AK SVKAYLDCVSQAKT
Sbjct  918   LLTPEARKLLEQQALDCLKNAKTDEERKKCLKDLPKDLQKKVLAKESVKAYLDCVSQAKT  977

Query  775   etekkeceklltPEAKKLLEQ--QAL----DCLKNAKTEAEKKRCVKDLPKDLQKKVL--  826
             E+EKKECEKLLTPEA+KLLE+  +++    DC+ +A+ E EKK C K L  +  KK+L  
Sbjct  978   EAEKKECEKLLTPEARKLLEEAKESIKAYKDCVSKARNEKEKKECEKLLTPE-AKKLLEE  1036

Query  827   -AKESLKVYLDCVSQakteaekkeceklltpeakklleeakeslkaYKDCVSRARNEKEK  885
              AKES+K YLDCVSQAKTEAEKKECEKLLTPEAKK LEEAK S+KAY DCVS+A+NE EK
Sbjct  1037  EAKESVKAYLDCVSQAKTEAEKKECEKLLTPEAKKKLEEAKKSVKAYLDCVSQAKNEDEK  1096

Query  886   QECEKLLTPEAKKLLEQQALDCLKNAKTEAEKKRCVKDLPKDLQKKVLAKESLKVYLDCV  945
             +ECEKLLTPEAKKLLEQQALDCLKNAKTEA+KKRCVKDLPKDLQKKVLAKES+K Y DCV
Sbjct  1097  KECEKLLTPEAKKLLEQQALDCLKNAKTEADKKRCVKDLPKDLQKKVLAKESVKAYKDCV  1156

Query  946   SQakteaekkeceklltpeakklleeakeslkaYKDCLSQARNEEERKACEKLLTPEARK  1005
             S+A+ E EKKECEKLLTPEAKKLLEEAK S+KAY DC+SQA+ E E+K CEKLLTPEA+K
Sbjct  1157  SRARNEKEKKECEKLLTPEAKKLLEEAKKSVKAYLDCVSQAKTEAEKKECEKLLTPEAKK  1216

Query  1006  LLEQEVKKSVKAYLDCVSQakteaekkeceklltPEARKLLEQQALDCLKNAKTEAEKKR  1065
             LLE E K S+KAY DCVS+A+ E EKKECEKLLTPEA+KLLEQQALDCLKNAKTEA+KKR
Sbjct  1217  LLE-EAKESLKAYKDCVSRARNEKEKKECEKLLTPEAKKLLEQQALDCLKNAKTEADKKR  1275

Query  1066  CVKDLPKDLQKKVLAKESVKAYLDCVSRARNEKEKQECeklltpeakklleeakeslkaY  1125
             CVKDLPKDLQKKVLAKESVKAYLDCVSRARNEKEK+ECEKLLTPEAKKLLEEAKESLKAY
Sbjct  1276  CVKDLPKDLQKKVLAKESVKAYLDCVSRARNEKEKKECEKLLTPEAKKLLEEAKESLKAY  1335

Query  1126  KDCVSQARNEEERKACEKLLTPEARKLLEQEVKKSVKAYLDCVSRARNEKEKQECEKLLT  1185
             KDC+SQARNEEER+ACEKLLTPEARKLLEQEVKKSVKAYLDCVS+A+ E EK+ECEKLLT
Sbjct  1336  KDCLSQARNEEERRACEKLLTPEARKLLEQEVKKSVKAYLDCVSQAKTEAEKKECEKLLT  1395

Query  1186  PEARKFLAKQALSCLEKARNEEERKACLKNIPKDLQKNVLAKESLKAYKDCLSQARNEEE  1245
             PEARKFLAKQ L+CLEKA NEEERKACLKN+PKDLQ NVLAKESLKAYKDCLSQARNEEE
Sbjct  1396  PEARKFLAKQVLNCLEKAGNEEERKACLKNLPKDLQENVLAKESLKAYKDCLSQARNEEE  1455

Query  1246  RKACEKLLTPEARKLLEQEVKKSVKAYLDCVSRARNEKEKQECEKLLTPEARKFLAKELQ  1305
             R+ACEKLLTPEARKLLEQEVKKSVKAYLDCVSRARNEKEK+ECEKLLTPEARKFLAKELQ
Sbjct  1456  RRACEKLLTPEARKLLEQEVKKSVKAYLDCVSRARNEKEKKECEKLLTPEARKFLAKELQ  1515

Query  1306  QKDKAIKDCLKNADPNDRAAIMKCLDGLSDEEKLKYLQEAREKAVLDCLKTARSDEEKRK  1365
             QKDKAIKDCLKNADPNDRAAIMKCLDGLSDEEKLKYLQEAREKAVLDCLKTAR+DEEKRK
Sbjct  1516  QKDKAIKDCLKNADPNDRAAIMKCLDGLSDEEKLKYLQEAREKAVLDCLKTARTDEEKRK  1575

Query  1366  CQNLYSDLIQEIQNKRTQSKQNQLSKTERLHQASECLDNLDDPTDQEAIEQCLEGLSDSE  1425
             CQNLYSDLIQEIQNKRTQSKQNQLSKTERLHQASECLDNLDDPTDQ+AIEQCLEGLSDSE
Sbjct  1576  CQNLYSDLIQEIQNKRTQSKQNQLSKTERLHQASECLDNLDDPTDQQAIEQCLEGLSDSE  1635

Query  1426  RALILGIKRQADEVDLIYSDLRNRKTFDNMAAKGYPLLPMDFKNGGDIATINATNVDADK  1485
             RALILGIKRQADEVD IYSDLRNRKTFDNMAAKGYPLLPMDFKNGGDIATINATNVDADK
Sbjct  1636  RALILGIKRQADEVDRIYSDLRNRKTFDNMAAKGYPLLPMDFKNGGDIATINATNVDADK  1695

Query  1486  IASDNPIYASIEPDITKQYETEKTIkdknleaklakalggnkkdddkekskksTAEARVE  1545
             IASDNPIYASIEPDITKQYETEKTIKDKNLEAKLAKALGGNKKDDDKEKSKKSTAEA+VE
Sbjct  1696  IASDNPIYASIEPDITKQYETEKTIKDKNLEAKLAKALGGNKKDDDKEKSKKSTAEAKVE  1755

Query  1546  SNKIDKDVAETAKNISEIALKNKKEKSGEFVDENGNPIddkkktekqdetSPVKQAFIGK  1605
             SNKIDKDVAETAKNISEIALKNKKEK+GEFVDENGNPIDDKKK+EKQDETSPVKQAFIGK
Sbjct  1756  SNKIDKDVAETAKNISEIALKNKKEKNGEFVDENGNPIDDKKKAEKQDETSPVKQAFIGK  1815

Query  1606  SDPTFVLAQYTPIEITLTSKVDATLTGIVSGVVAKDVWNMNGTMILLDKGTKVYGNYQSV  1665
             SDPTFVLAQYTPIEITLTSKVDATLTGIVSGVVAKDVWNMNGTMILLDKGTKVYGNYQSV
Sbjct  1816  SDPTFVLAQYTPIEITLTSKVDATLTGIVSGVVAKDVWNMNGTMILLDKGTKVYGNYQSV  1875

Query  1666  KGGTPIMTRLMIVFTKAITPDGVIIPLANAQAAGMLGEAGVDGYVNNHFMKRIGFAVIAS  1725
             KGGTPIMTRLMIVFTKAITPDGVIIPLANAQAAGMLGEAGVDGYVNNHFMKRIGFAVIAS
Sbjct  1876  KGGTPIMTRLMIVFTKAITPDGVIIPLANAQAAGMLGEAGVDGYVNNHFMKRIGFAVIAS  1935

Query  1726  VVNSFLQTAPIIALDKLIGLGKGRSERTPEFNYALGQAINGSMQSSAQMSNQILGQLMNI  1785
             VVNSFLQTAPIIALDKLIGLGKGRSERTPEFNYALGQAINGSMQSSAQMSNQILGQLMNI
Sbjct  1936  VVNSFLQTAPIIALDKLIGLGKGRSERTPEFNYALGQAINGSMQSSAQMSNQILGQLMNI  1995

Query  1786  PPSFYKNEGDSIKILTMDDIDFSGVYDVKITNKSVVDEIIKQSTKTLSREHEEITTSPKG  1845
             PPSFYKNEGDSIKILTMDDIDFSGVYDVKITNKSVVDEIIKQSTKTLSREHEEITTSPKG
Sbjct  1996  PPSFYKNEGDSIKILTMDDIDFSGVYDVKITNKSVVDEIIKQSTKTLSREHEEITTSPKG  2055

Query  1846  GN  1847
             GN
Sbjct  2056  GN  2057


 Score =  279 bits (1045),  Expect = 8e-76, Method: Compositional matrix adjust.
 Identities = 282/326 (87%), Positives = 296/326 (91%), Gaps = 4/326 (1%)

Query  1    MNEENDKLETSKKTQQHSPQDLSNEETTKANRFedsskeskessdHHLDNSTETKTNFDE  60
            MNEENDKLETSKKTQQHSPQDLSNEE+T  N+FEDSSKESKESSDHHL+N+TETKTNFD 
Sbjct  1    MNEENDKLETSKKTQQHSPQDLSNEEATEINHFEDSSKESKESSDHHLNNPTETKTNFDG  60

Query  61   EKSEETQTQMDSGGNETSESSN--LADKLFKKARKLVDNKRPFTQQKNLdeeiqepneed  118
            +KSEETQTQMDSGG+ETSESSN  LADKLFKKARKLVDNKRPFTQQKNLDEE QE NEED
Sbjct  61   DKSEETQTQMDSGGDETSESSNGSLADKLFKKARKLVDNKRPFTQQKNLDEETQELNEED  120

Query  119  dqennGYQEETQMDLIDDETSKKTQQHSPQDLSNEETIKANHFedsskesnessdHHLDN  178
            DQENNGYQEETQ +LIDDETSKKTQQHSPQDLSNEE+   NHFEDSSKES+ESSD  LDN
Sbjct  121  DQENNGYQEETQTGLIDDETSKKTQQHSPQDLSNEEATEINHFEDSSKESKESSDPYLDN  180

Query  179  STETKTNFDEYKSEETQTQMDSGGNETSESSN--LADKLFKKARKLVDNKRPFTQQKNLd  236
            +TETKTNFD  KSEETQTQMDSGG+ETSESSN  LADKLFKKARKLVDNKRPFTQQKNLD
Sbjct  181  PTETKTNFDGDKSEETQTQMDSGGDETSESSNGSLADKLFKKARKLVDNKRPFTQQKNLD  240

Query  237  eeiqepneeddqennGYQEETQMDLIDDETSKKTQQHSPQDLSNEETIKANHFedsskes  296
            EE QE NEEDDQENNGYQEETQ +LIDDETSKKTQQHSPQDLSNEE+   NHFEDSSKES
Sbjct  241  EETQELNEEDDQENNGYQEETQTGLIDDETSKKTQQHSPQDLSNEEATEINHFEDSSKES  300

Query  297  kkssdHHLDNYTETKANFDEYKSEEI  322
            K SSD  LDN TETK+NFD  KSEE 
Sbjct  301  KESSDPYLDNPTETKTNFDGDKSEET  326

14) HPPN135_02585 in NC_017379


> JQ685140|1|G1|442739065|AGC69792.1|Helicobacter_pylori_J166_isolate_MJ166sc3|+|1..6174|cagY|-|cag 
pathogenicity island protein 
Y
Length=2057

 Score = 1957 bits (7435),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 1748/1927 (91%), Positives = 1802/1927 (94%), Gaps = 76/1927 (3%)

Query  9     ETSKKTQQHSPQDLSNEETIKANHFedsskeskessdHHLDNSTETKTNFDEYKSEETQT  68
             ETSKKTQQHSPQDLSNEE+   NHFEDSSKESKESSD  LDN+TETKTNFD  KSEETQT
Sbjct  139   ETSKKTQQHSPQDLSNEEATEINHFEDSSKESKESSDPYLDNPTETKTNFDGDKSEETQT  198

Query  69    QMDFGGNETSESSN--LADKLFKKARKLVDNKRPFTQQKNLdeeiqepneeddqennGYQ  126
             QMD GG+ETSESSN  LADKLFKKARKLVDNKRPFTQQKNLDEE QE NEEDDQENNGYQ
Sbjct  199   QMDSGGDETSESSNGSLADKLFKKARKLVDNKRPFTQQKNLDEETQELNEEDDQENNGYQ  258

Query  127   EETIKA--------------------------NHFedsskeskessdH-LDNSTETKTNF  159
             EET  +                          NHFEDSSKESKESSD  LDN+TETKTNF
Sbjct  259   EETQTGLIDDETSKKTQQHSPQDLSNEEATEINHFEDSSKESKESSDPYLDNPTETKTNF  318

Query  160   DGEKSEETQTQMDSGDNETSESSN--LADKLFKKARKLVDNKRPFTQQKNLdeeiqepne  217
             DG+KSEETQTQMDSG++ETSESSN  LADKLFKKARKLVDNKRPFTQQKNLDEE QE NE
Sbjct  319   DGDKSEETQTQMDSGGDETSESSNGSLADKLFKKARKLVDNKRPFTQQKNLDEETQELNE  378

Query  218   eddqennGYQEEIQMDLIDDETSKKTQQHSPQDLSNEETIKANHFedsskeskessdHHL  277
             EDDQENNGYQEE Q +LIDDETSKKTQQHSPQDLSNEE+   NHFEDSSKESKESSD  L
Sbjct  379   EDDQENNGYQEETQTGLIDDETSKKTQQHSPQDLSNEEATEINHFEDSSKESKESSDPYL  438

Query  278   DNPTETKTNFDEYKSEEITNDSNDQEiikgskkkyiiggivvavliviilFSRSIFHYFI  337
             DNPTETKTNFDE KSEEITNDSNDQEIIKGSKKKYIIGGIVVAVLIVIILFSRSIFHYF+
Sbjct  439   DNPTETKTNFDEDKSEEITNDSNDQEIIKGSKKKYIIGGIVVAVLIVIILFSRSIFHYFM  498

Query  338   PLEDKSSRFSKDRNLYVNDEIQIRQEYNRLLKERNEKGNMIDKNLFFNDDPNRTLYNYLN  397
             PLEDKSSRFSKDRNLYVNDEIQIRQEYNRLLKERNEKGNMIDKNLFFNDDPNRTLYNYLN
Sbjct  499   PLEDKSSRFSKDRNLYVNDEIQIRQEYNRLLKERNEKGNMIDKNLFFNDDPNRTLYNYLN  558

Query  398   IAEIEDKNPLRAFYECISNGGNYEEClklikdkklqdqmkktlEAYNDCIKNAKTEEERI  457
             IAEIEDKNPLRAFYECISNGGNYEECLKLIKDKKLQDQMKKTLEAYNDCIKNAKTEEERI
Sbjct  559   IAEIEDKNPLRAFYECISNGGNYEECLKLIKDKKLQDQMKKTLEAYNDCIKNAKTEEERI  618

Query  458   KCLDLIKDENLKKSLLNQQKVQVALDCLKNAKTDEERNECLKLINDPEIrekfrkelelq  517
             KCLDLIKDENLKKSLLNQQKVQVALDCLKNAKTDEER+ECLKLINDPEIREKFRKELELQ
Sbjct  619   KCLDLIKDENLKKSLLNQQKVQVALDCLKNAKTDEERKECLKLINDPEIREKFRKELELQ  678

Query  518   kelqeYKDCIKNAKTEAEKNKCLKGLSKEAIERLKQQALDCLKNAKTDEERNECLKNIPQ  577
             KELQEYKDCIKNAKTEAEKN CLKGLSKEAIERLKQQALDCLKNAKTDEERNECLKNIPQ
Sbjct  679   KELQEYKDCIKNAKTEAEKNECLKGLSKEAIERLKQQALDCLKNAKTDEERNECLKNIPQ  738

Query  578   DLQKELLADMSVKAYKDCVSKARNekekkecekLLTPEARKKLEQQVLDCLKNAKTDEER  637
             DLQKELLADMSVKAYKDCVSKARNEKEK+ECEKLLTPEARKKLEQQVLDCLKNAKTDEER
Sbjct  739   DLQKELLADMSVKAYKDCVSKARNEKEKQECEKLLTPEARKKLEQQVLDCLKNAKTDEER  798

Query  638   KKCLKDLPKDLQSDILAKESVKAYKDCVSQakteaekkeceklltpeakklleeeakeSV  697
             KKCLKDLPKDLQSDILAKESVKAYKDCVSQAK EAEKKECEKLLTPEAKKLLEEEAKESV
Sbjct  799   KKCLKDLPKDLQSDILAKESVKAYKDCVSQAKNEAEKKECEKLLTPEAKKLLEEEAKESV  858

Query  698   KAYLDCVSQakteaekkaceklltpeakkkleeakksvkaYLDCVSQakteaekkacekL  757
             KAYLDCVSQAKTEAEKK CEKLLTPEA+KKLEEAKKSVKAYLDCVSQAK E EKK CEKL
Sbjct  859   KAYLDCVSQAKTEAEKKECEKLLTPEARKKLEEAKKSVKAYLDCVSQAKNEDEKKECEKL  918

Query  758   LTPEAKKLLEQQALDCLKNAKTEAEKKRCVKDLPKDLQKKVLAKESVKAYLDCVSQakte  817
             LTPEA+KLLEQQALDCLKNAKT+ E+K+C+KDLPKDLQKKVLAKESVKAYLDCVSQAKTE
Sbjct  919   LTPEARKLLEQQALDCLKNAKTDEERKKCLKDLPKDLQKKVLAKESVKAYLDCVSQAKTE  978

Query  818   aekkeceklltpeakklleeakeslkaYKDCVSRARNEKEKQECEKLLTPEARKLLEQEV  877
             AEKKECEKLLTPEA+KLLEEAKES+KAYKDCVS+ARNEKEK+ECEKLLTPEA+KLLE+E 
Sbjct  979   AEKKECEKLLTPEARKLLEEAKESIKAYKDCVSKARNEKEKKECEKLLTPEAKKLLEEEA  1038

Query  878   KKSVKAYKDCVSQakteaekkeceklltpeakklleeakeslkaYKDCVSRARNekekke  937
             K SVKAY DCVSQAKTEAEKKECEKLLTPEAKK LEEAK S+KAY DCVS+A+NE EKKE
Sbjct  1039  KESVKAYLDCVSQAKTEAEKKECEKLLTPEAKKKLEEAKKSVKAYLDCVSQAKNEDEKKE  1098

Query  938   ceklltpeakklleeeakeSVKAYLDCVSQARTEAEKKECEK------------------  979
             CEKLLTPEAKKLLE++A       LDC+ +A+TEA+KK C K                  
Sbjct  1099  CEKLLTPEAKKLLEQQA-------LDCLKNAKTEADKKRCVKDLPKDLQKKVLAKESVKA  1151

Query  980   -------------------LLTPEARKKLEEAKKSVKAYLDCVSQakteaekkecekllt  1020
                                LLTPEA+K LEEAKKSVKAYLDCVSQAKTEAEKKECEKLLT
Sbjct  1152  YKDCVSRARNEKEKKECEKLLTPEAKKLLEEAKKSVKAYLDCVSQAKTEAEKKECEKLLT  1211

Query  1021  PEARKLLEQEVKKSVKAYLDCVSRARNekekkecekLLTPEAKKLLEQQALDCLKNAKTE  1080
             PEA+KLLE E K S+KAY DCVSRARNEKEKKECEKLLTPEAKKLLEQQALDCLKNAKTE
Sbjct  1212  PEAKKLLE-EAKESLKAYKDCVSRARNEKEKKECEKLLTPEAKKLLEQQALDCLKNAKTE  1270

Query  1081  SERKRCVKDLPKDLQKKVLAKESVKAYLDCVSRARNekekkecekLLTPEARKLLEEAKE  1140
             +++KRCVKDLPKDLQKKVLAKESVKAYLDCVSRARNEKEKKECEKLLTPEA+KLLEEAKE
Sbjct  1271  ADKKRCVKDLPKDLQKKVLAKESVKAYLDCVSRARNEKEKKECEKLLTPEAKKLLEEAKE  1330

Query  1141  SLKAYKDCLSQARNEEERKACEKLLTPEARKLLEQEVKKSVKAYLDCVSRARNEKEKQEC  1200
             SLKAYKDCLSQARNEEER+ACEKLLTPEARKLLEQEVKKSVKAYLDCVS+A+ E EK+EC
Sbjct  1331  SLKAYKDCLSQARNEEERRACEKLLTPEARKLLEQEVKKSVKAYLDCVSQAKTEAEKKEC  1390

Query  1201  EKLLTPEARKFLAKQVLSCLEKARNEEERKACLKDIPKDLQKNVLAKESLKAYKDCLSQA  1260
             EKLLTPEARKFLAKQVL+CLEKA NEEERKACLK++PKDLQ NVLAKESLKAYKDCLSQA
Sbjct  1391  EKLLTPEARKFLAKQVLNCLEKAGNEEERKACLKNLPKDLQENVLAKESLKAYKDCLSQA  1450

Query  1261  RNEEERKACEKLLTPEARKLLEQEVKKSVKAYLDCVSRARNEKEKQECEKLLTPEARKFL  1320
             RNEEER+ACEKLLTPEARKLLEQEVKKSVKAYLDCVSRARNEKEK+ECEKLLTPEARKFL
Sbjct  1451  RNEEERRACEKLLTPEARKLLEQEVKKSVKAYLDCVSRARNEKEKKECEKLLTPEARKFL  1510

Query  1321  AKELQQKDKAIKDCLKNADPNDRAAIMKCLDGLSDEEKLKYLQEAREKAVLDCLKTARTD  1380
             AKELQQKDKAIKDCLKNADPNDRAAIMKCLDGLSDEEKLKYLQEAREKAVLDCLKTARTD
Sbjct  1511  AKELQQKDKAIKDCLKNADPNDRAAIMKCLDGLSDEEKLKYLQEAREKAVLDCLKTARTD  1570

Query  1381  EEKRKCQNLYSDLIQEIQNKRTQSKQNQLSKTERLHQASECLDNLDDPTDQEAIEQCLEG  1440
             EEKRKCQNLYSDLIQEIQNKRTQSKQNQLSKTERLHQASECLDNLDDPTDQ+AIEQCLEG
Sbjct  1571  EEKRKCQNLYSDLIQEIQNKRTQSKQNQLSKTERLHQASECLDNLDDPTDQQAIEQCLEG  1630

Query  1441  LSDSERALILGIKRQADEVDLIYSDLRNRKTFDNMAAKGYPLLPMDFKNGGDIATINATN  1500
             LSDSERALILGIKRQADEVD IYSDLRNRKTFDNMAAKGYPLLPMDFKNGGDIATINATN
Sbjct  1631  LSDSERALILGIKRQADEVDRIYSDLRNRKTFDNMAAKGYPLLPMDFKNGGDIATINATN  1690

Query  1501  VDADKIASDNPIYASIEPDITKQYETEKTIkdknleaklakalggnkkdddkekskksTA  1560
             VDADKIASDNPIYASIEPDITKQYETEKTIKDKNLEAKLAKALGGNKKDDDKEKSKKSTA
Sbjct  1691  VDADKIASDNPIYASIEPDITKQYETEKTIKDKNLEAKLAKALGGNKKDDDKEKSKKSTA  1750

Query  1561  EARVESNKIDKDVAETAKNISEIALKNKKEKSGEFVDENGNPIddkkktekqdetSPVKQ  1620
             EA+VESNKIDKDVAETAKNISEIALKNKKEK+GEFVDENGNPIDDKKK+EKQDETSPVKQ
Sbjct  1751  EAKVESNKIDKDVAETAKNISEIALKNKKEKNGEFVDENGNPIDDKKKAEKQDETSPVKQ  1810

Query  1621  AFIGKSDPTFVLAQYTPIEITLTSKVDATLTGIVSGVVAKDVWNMNGTMILLDKGTKVYG  1680
             AFIGKSDPTFVLAQYTPIEITLTSKVDATLTGIVSGVVAKDVWNMNGTMILLDKGTKVYG
Sbjct  1811  AFIGKSDPTFVLAQYTPIEITLTSKVDATLTGIVSGVVAKDVWNMNGTMILLDKGTKVYG  1870

Query  1681  NYQSVKGGTPIMTRLMIVFTKAITPDGVIIPLANAQAAGMLGEAGVDGYVNNHFMKRIGF  1740
             NYQSVKGGTPIMTRLMIVFTKAITPDGVIIPLANAQAAGMLGEAGVDGYVNNHFMKRIGF
Sbjct  1871  NYQSVKGGTPIMTRLMIVFTKAITPDGVIIPLANAQAAGMLGEAGVDGYVNNHFMKRIGF  1930

Query  1741  AVIASVVNSFLQTAPIIALDKLIGLGKGRSERTPEFNYALGQAINGSMQSSAQMSNQILG  1800
             AVIASVVNSFLQTAPIIALDKLIGLGKGRSERTPEFNYALGQAINGSMQSSAQMSNQILG
Sbjct  1931  AVIASVVNSFLQTAPIIALDKLIGLGKGRSERTPEFNYALGQAINGSMQSSAQMSNQILG  1990

Query  1801  QLMNIPPSFYKNEGDSIKILTMDDIDFSGVYDVKITNKSVVDEIIKQSTKTLSREHEEIT  1860
             QLMNIPPSFYKNEGDSIKILTMDDIDFSGVYDVKITNKSVVDEIIKQSTKTLSREHEEIT
Sbjct  1991  QLMNIPPSFYKNEGDSIKILTMDDIDFSGVYDVKITNKSVVDEIIKQSTKTLSREHEEIT  2050

Query  1861  TSPKGGN  1867
             TSPKGGN
Sbjct  2051  TSPKGGN  2057


 Score =  231 bits (860),  Expect = 3e-61, Method: Compositional matrix adjust.
 Identities = 261/329 (80%), Positives = 273/329 (83%), Gaps = 31/329 (9%)

Query  1    MNEENDKLETSKKTQQHSPQDLSNEETIKANHFedsskeskessdHHLDNSTETKTNFDE  60
            MNEENDKLETSKKTQQHSPQDLSNEE+   NHFEDSSKESKESSDHHL+N+TETKTNFD 
Sbjct  1    MNEENDKLETSKKTQQHSPQDLSNEEATEINHFEDSSKESKESSDHHLNNPTETKTNFDG  60

Query  61   YKSEETQTQMDFGGNETSESSN--LADKLFKKARKLVDNKRPFTQQKNLdeeiqepneed  118
             KSEETQTQMD GG+ETSESSN  LADKLFKKARKLVDNKRPFTQQKNLDEE QE NEED
Sbjct  61   DKSEETQTQMDSGGDETSESSNGSLADKLFKKARKLVDNKRPFTQQKNLDEETQELNEED  120

Query  119  dqennGYQEETIKA--------------------------NHFedsskeskessdH-LDN  151
            DQENNGYQEET  +                          NHFEDSSKESKESSD  LDN
Sbjct  121  DQENNGYQEETQTGLIDDETSKKTQQHSPQDLSNEEATEINHFEDSSKESKESSDPYLDN  180

Query  152  STETKTNFDGEKSEETQTQMDSGDNETSESSN--LADKLFKKARKLVDNKRPFTQQKNLd  209
            +TETKTNFDG+KSEETQTQMDSG++ETSESSN  LADKLFKKARKLVDNKRPFTQQKNLD
Sbjct  181  PTETKTNFDGDKSEETQTQMDSGGDETSESSNGSLADKLFKKARKLVDNKRPFTQQKNLD  240

Query  210  eeiqepneeddqennGYQEEIQMDLIDDETSKKTQQHSPQDLSNEETIKANHFedsskes  269
            EE QE NEEDDQENNGYQEE Q +LIDDETSKKTQQHSPQDLSNEE+   NHFEDSSKES
Sbjct  241  EETQELNEEDDQENNGYQEETQTGLIDDETSKKTQQHSPQDLSNEEATEINHFEDSSKES  300

Query  270  kessdHHLDNPTETKTNFDEYKSEEITND  298
            KESSD  LDNPTETKTNFD  KSEE   +
Sbjct  301  KESSDPYLDNPTETKTNFDGDKSEETQTQ  329

15) HPSH_04285 in NC_010698


> JQ685140|1|G1|442739065|AGC69792.1|Helicobacter_pylori_J166_isolate_MJ166sc3|+|1..6174|cagY|-|cag 
pathogenicity island protein 
Y
Length=2057

 Score = 1951 bits (7413),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 1731/1919 (91%), Positives = 1793/1919 (94%), Gaps = 73/1919 (3%)

Query  9     ETSKKTQQHSPQDLSNEETIKANHFEDsskeskessNHHLDNSTETKTNFDEYKSEETQT  68
             ETSKKTQQHSPQDLSNEE+   NHFEDSSKESKESS+  LDN+TETKTNFD  KSEETQT
Sbjct  139   ETSKKTQQHSPQDLSNEEATEINHFEDSSKESKESSDPYLDNPTETKTNFDGDKSEETQT  198

Query  69    QMDSGGNETSESSN--LADKLFKKARKLVDNKRPFTQQKNLdeeiqepneeddqennGYQ  126
             QMDSGG+ETSESSN  LADKLFKKARKLVDNKRPFTQQKNLDEE QE NEEDDQENNGYQ
Sbjct  199   QMDSGGDETSESSNGSLADKLFKKARKLVDNKRPFTQQKNLDEETQELNEEDDQENNGYQ  258

Query  127   EEIQMDLIDDETSKKTQQHSPQDLSNEETIKANHFedsseeskensdHHLDNSTETKTNF  186
             EE Q +LIDDETSKKTQQHSPQDLSNEE+   NHFEDSS ESKE+SD  LDN+TETKTNF
Sbjct  259   EETQTGLIDDETSKKTQQHSPQDLSNEEATEINHFEDSSKESKESSDPYLDNPTETKTNF  318

Query  187   DGEKSEETQTQMDSGGNETSESSN--LADKLFKKARKLVDNKRPFTQQKNLdeeiqepne  244
             DG+KSEETQTQMDSGG+ETSESSN  LADKLFKKARKLVDNKRPFTQQKNLDEE QE NE
Sbjct  319   DGDKSEETQTQMDSGGDETSESSNGSLADKLFKKARKLVDNKRPFTQQKNLDEETQELNE  378

Query  245   eddqennGYQEEIQMDLIDDETSKKTQQHSPQDLSNEETIKANHFedsskeskensdHHL  304
             EDDQENNGYQEE Q +LIDDETSKKTQQHSPQDLSNEE+   NHFEDSSKESKE+SD  L
Sbjct  379   EDDQENNGYQEETQTGLIDDETSKKTQQHSPQDLSNEEATEINHFEDSSKESKESSDPYL  438

Query  305   DNSTETKTNFDGEKSEEITNDSNDQEiikgskkkyiiggivvavliviilFSRSIFHYFI  364
             DN+TETKTNFD +KSEEITNDSNDQEIIKGSKKKYIIGGIVVAVLIVIILFSRSIFHYF+
Sbjct  439   DNPTETKTNFDEDKSEEITNDSNDQEIIKGSKKKYIIGGIVVAVLIVIILFSRSIFHYFM  498

Query  365   PLEDKSSRFSKDRNLYVNDEIQIRQEYNRLLKERNEKGNMIDKNLFFNDDPNRTLYNYLN  424
             PLEDKSSRFSKDRNLYVNDEIQIRQEYNRLLKERNEKGNMIDKNLFFNDDPNRTLYNYLN
Sbjct  499   PLEDKSSRFSKDRNLYVNDEIQIRQEYNRLLKERNEKGNMIDKNLFFNDDPNRTLYNYLN  558

Query  425   IAEIEDKNPLRAFYECISNGGNYEEClklikdkklqdqmkktlEAYNDCIKNAKTEEERI  484
             IAEIEDKNPLRAFYECISNGGNYEECLKLIKDKKLQDQMKKTLEAYNDCIKNAKTEEERI
Sbjct  559   IAEIEDKNPLRAFYECISNGGNYEECLKLIKDKKLQDQMKKTLEAYNDCIKNAKTEEERI  618

Query  485   KCLDLIKDENLKKSLLNQQKVQVALDCLKNAKTDEERNECLKLINDPEIrekfrkelelq  544
             KCLDLIKDENLKKSLLNQQKVQVALDCLKNAKTDEER+ECLKLINDPEIREKFRKELELQ
Sbjct  619   KCLDLIKDENLKKSLLNQQKVQVALDCLKNAKTDEERKECLKLINDPEIREKFRKELELQ  678

Query  545   kelqeYKDCIKNAKTEAEKNECLKGLSKEAIERLKQQALDCLKNAKTDEERKKCLKNIPQ  604
             KELQEYKDCIKNAKTEAEKNECLKGLSKEAIERLKQQALDCLKNAKTDEER+ CLKNIPQ
Sbjct  679   KELQEYKDCIKNAKTEAEKNECLKGLSKEAIERLKQQALDCLKNAKTDEERNECLKNIPQ  738

Query  605   DLQKELLADMSVKAYKDCVSKARNekekkecekLLTPEAKKKLEQQVLDCLKNAKTDEER  664
             DLQKELLADMSVKAYKDCVSKARNEKEK+ECEKLLTPEA+KKLEQQVLDCLKNAKTDEER
Sbjct  739   DLQKELLADMSVKAYKDCVSKARNEKEKQECEKLLTPEARKKLEQQVLDCLKNAKTDEER  798

Query  665   KKCLKDLPKDLQSDILAKESVKAYKDCVSQARTEAEKKECeklltpeakklleeeakeSV  724
             KKCLKDLPKDLQSDILAKESVKAYKDCVSQA+ EAEKKECEKLLTPEAKKLLEEEAKESV
Sbjct  799   KKCLKDLPKDLQSDILAKESVKAYKDCVSQAKNEAEKKECEKLLTPEAKKLLEEEAKESV  858

Query  725   KAYLDCVSQakteaekkeceklltpeakkkleeakksvkaYLDCVSQakteaekkecekl  784
             KAYLDCVSQAKTEAEKKECEKLLTPEA+KKLEEAKKSVKAYLDCVSQAK E EKKECEKL
Sbjct  859   KAYLDCVSQAKTEAEKKECEKLLTPEARKKLEEAKKSVKAYLDCVSQAKNEDEKKECEKL  918

Query  785   ltPEARKLLEQQALDCLKNAKTEAEKKRCVKDLPKDLQKKVLAKESVKAYLDCVSQakte  844
             LTPEARKLLEQQALDCLKNAKT+ E+K+C+KDLPKDLQKKVLAKESVKAYLDCVSQAKTE
Sbjct  919   LTPEARKLLEQQALDCLKNAKTDEERKKCLKDLPKDLQKKVLAKESVKAYLDCVSQAKTE  978

Query  845   aekkeceklltpeakklleeakeslkaYKDCVSQARTEAEKKECeklltpeakklleeea  904
             AEKKECEKLLTPEA+KLLEEAKES+KAYKDCVS+AR E EKKECEKLLTPEAKKLLEEEA
Sbjct  979   AEKKECEKLLTPEARKLLEEAKESIKAYKDCVSKARNEKEKKECEKLLTPEAKKLLEEEA  1038

Query  905   keSVKAYLDCVSRARNEKEKQECEKLLTPEARKKLEEAKKSVKAYLDCVSQakteaekke  964
             KESVKAYLDCVS+A+ E EK+ECEKLLTPEA+KKLEEAKKSVKAYLDCVSQAK E EKKE
Sbjct  1039  KESVKAYLDCVSQAKTEAEKKECEKLLTPEAKKKLEEAKKSVKAYLDCVSQAKNEDEKKE  1098

Query  965   ceklltPEAKKLLEQQALDCLKNAKTEAEKKRCVKDLPKDLQKKVLAKESLKAYKDCVSR  1024
             CEKLLTPEAKKLLEQQALDCLKNAKTEA+KKRCVKDLPKDLQKKVLAKES+KAYKDCVSR
Sbjct  1099  CEKLLTPEAKKLLEQQALDCLKNAKTEADKKRCVKDLPKDLQKKVLAKESVKAYKDCVSR  1158

Query  1025  ARNekekkeceklltpeakklleeakeslkaYKDCVSRARNekekkecekLLTPEARKLL  1084
             ARNEKEKKECEKLLTPEAKKLLEEAK S+KAY DCVS+A+ E EKKECEKLLTPEA+KLL
Sbjct  1159  ARNEKEKKECEKLLTPEAKKLLEEAKKSVKAYLDCVSQAKTEAEKKECEKLLTPEAKKLL  1218

Query  1085  EEAKKSVKAYLDCVSRARNekekkecekLLTPEARKLLEE--------------------  1124
             EEAK S+KAY DCVSRARNEKEKKECEKLLTPEA+KLLE+                    
Sbjct  1219  EEAKESLKAYKDCVSRARNEKEKKECEKLLTPEAKKLLEQQALDCLKNAKTEADKKRCVK  1278

Query  1125  -----------AKESLKAYKDCLSQARNEEERKACEKLLTPEARKLL-------------  1160
                        AKES+KAY DC+S+ARNE E+K CEKLLTPEA+KLL             
Sbjct  1279  DLPKDLQKKVLAKESVKAYLDCVSRARNEKEKKECEKLLTPEAKKLLEEAKESLKAYKDC  1338

Query  1161  -------------------------EQEVKKSVKAYLDCVSRARNEKEKQECEKLLTPEA  1195
                                      EQEVKKSVKAYLDCVS+A+ E EK+ECEKLLTPEA
Sbjct  1339  LSQARNEEERRACEKLLTPEARKLLEQEVKKSVKAYLDCVSQAKTEAEKKECEKLLTPEA  1398

Query  1196  RKFLAKQALSCLEKARNEEERKACLKNIPKDLQKNVLAKESLKAYKDCLSQARNEEERKA  1255
             RKFLAKQ L+CLEKA NEEERKACLKN+PKDLQ NVLAKESLKAYKDCLSQARNEEER+A
Sbjct  1399  RKFLAKQVLNCLEKAGNEEERKACLKNLPKDLQENVLAKESLKAYKDCLSQARNEEERRA  1458

Query  1256  CEKLLTPEARKLLEQEVKNSVKAYLDCVSRARNEKEKQECEKLLTPEARKFLAKELQQKD  1315
             CEKLLTPEARKLLEQEVK+SVKAYLDCVSRARNEKEK+ECEKLLTPEARKFLAKELQQKD
Sbjct  1459  CEKLLTPEARKLLEQEVKKSVKAYLDCVSRARNEKEKKECEKLLTPEARKFLAKELQQKD  1518

Query  1316  KAIKDCLKNADPNDRAAIMKCLDGLSDEEKLKYLQEAREKAVLDCLKTAKTDEEKRKCQN  1375
             KAIKDCLKNADPNDRAAIMKCLDGLSDEEKLKYLQEAREKAVLDCLKTA+TDEEKRKCQN
Sbjct  1519  KAIKDCLKNADPNDRAAIMKCLDGLSDEEKLKYLQEAREKAVLDCLKTARTDEEKRKCQN  1578

Query  1376  LYSDLIQEIQNKRAQSKQNQLSKTERLHQASECLDNLDDPTDQEAIEQCLEGLSDSERAL  1435
             LYSDLIQEIQNKR+QSKQNQLSKTERLHQASECLDNLDDPTDQ+AIEQCLEGLSDSERAL
Sbjct  1579  LYSDLIQEIQNKRTQSKQNQLSKTERLHQASECLDNLDDPTDQQAIEQCLEGLSDSERAL  1638

Query  1436  ILGIKRQADEVDLIYSDLRNRKTFDNMAAKGYPLLPMDFKNGGDIATINATNVDADKIAS  1495
             ILGIKRQADEVD IYSDLRNRKTFDNMAAKGYPLLPMDFKNGGDIATINATNVDADKIAS
Sbjct  1639  ILGIKRQADEVDRIYSDLRNRKTFDNMAAKGYPLLPMDFKNGGDIATINATNVDADKIAS  1698

Query  1496  DNPIYASIEPDITKQYETEKTIkdknleaklakalggnkkdddkekskksTAEARVESNK  1555
             DNPIYASIEPDITKQYETEKTIKDKNLEAKLAKALGGNKKDDDKEKSKKSTAEA+VESNK
Sbjct  1699  DNPIYASIEPDITKQYETEKTIKDKNLEAKLAKALGGNKKDDDKEKSKKSTAEAKVESNK  1758

Query  1556  IDKDVAETAKNISEIALKNKKEKSGEFVDENGNPIddkkktekqdetSPVKQAFIGKSDP  1615
             IDKDVAETAKNISEIALKNKKEK+GEFVDENGNPIDDKKK+EKQDETSPVKQAFIGKSDP
Sbjct  1759  IDKDVAETAKNISEIALKNKKEKNGEFVDENGNPIDDKKKAEKQDETSPVKQAFIGKSDP  1818

Query  1616  TFVLAQYTPIEITLTSKVDATLTGIVSGVVAKDVWNMNGTMILLDKGTKVYGNYQSVKGG  1675
             TFVLAQYTPIEITLTSKVDATLTGIVSGVVAKDVWNMNGTMILLDKGTKVYGNYQSVKGG
Sbjct  1819  TFVLAQYTPIEITLTSKVDATLTGIVSGVVAKDVWNMNGTMILLDKGTKVYGNYQSVKGG  1878

Query  1676  TPIMTRLMIVFTKAITPDGVIIPLANAQAAGMLGEAGVDGYVNNHFMKRIGFAVVASVVN  1735
             TPIMTRLMIVFTKAITPDGVIIPLANAQAAGMLGEAGVDGYVNNHFMKRIGFAV+ASVVN
Sbjct  1879  TPIMTRLMIVFTKAITPDGVIIPLANAQAAGMLGEAGVDGYVNNHFMKRIGFAVIASVVN  1938

Query  1736  SFLQTAPIIALDKLIGLGKGRSERTPEFNYALGQAINGSMQSSAQMSNQILGQLMNIPPS  1795
             SFLQTAPIIALDKLIGLGKGRSERTPEFNYALGQAINGSMQSSAQMSNQILGQLMNIPPS
Sbjct  1939  SFLQTAPIIALDKLIGLGKGRSERTPEFNYALGQAINGSMQSSAQMSNQILGQLMNIPPS  1998

Query  1796  FYKNEGDSIKILTMDDIDFSGVYDVKITNKSVVDEIIKQSTKTLSREHEEITTSPKGGN  1854
             FYKNEGDSIKILTMDDIDFSGVYDVKITNKSVVDEIIKQSTKTLSREHEEITTSPKGGN
Sbjct  1999  FYKNEGDSIKILTMDDIDFSGVYDVKITNKSVVDEIIKQSTKTLSREHEEITTSPKGGN  2057


 Score =  289 bits (1082),  Expect = 9e-79, Method: Compositional matrix adjust.
 Identities = 281/329 (86%), Positives = 298/329 (91%), Gaps = 4/329 (1%)

Query  1    MNEENDKLETSKKTQQHSPQDLSNEETIKANHFEDsskeskessNHHLDNSTETKTNFDE  60
            MNEENDKLETSKKTQQHSPQDLSNEE+   NHFEDSSKESKESS+HHL+N+TETKTNFD 
Sbjct  1    MNEENDKLETSKKTQQHSPQDLSNEEATEINHFEDSSKESKESSDHHLNNPTETKTNFDG  60

Query  61   YKSEETQTQMDSGGNETSESSN--LADKLFKKARKLVDNKRPFTQQKNLdeeiqepneed  118
             KSEETQTQMDSGG+ETSESSN  LADKLFKKARKLVDNKRPFTQQKNLDEE QE NEED
Sbjct  61   DKSEETQTQMDSGGDETSESSNGSLADKLFKKARKLVDNKRPFTQQKNLDEETQELNEED  120

Query  119  dqennGYQEEIQMDLIDDETSKKTQQHSPQDLSNEETIKANHFedsseeskensdHHLDN  178
            DQENNGYQEE Q +LIDDETSKKTQQHSPQDLSNEE+   NHFEDSS ESKE+SD  LDN
Sbjct  121  DQENNGYQEETQTGLIDDETSKKTQQHSPQDLSNEEATEINHFEDSSKESKESSDPYLDN  180

Query  179  STETKTNFDGEKSEETQTQMDSGGNETSESSN--LADKLFKKARKLVDNKRPFTQQKNLd  236
            +TETKTNFDG+KSEETQTQMDSGG+ETSESSN  LADKLFKKARKLVDNKRPFTQQKNLD
Sbjct  181  PTETKTNFDGDKSEETQTQMDSGGDETSESSNGSLADKLFKKARKLVDNKRPFTQQKNLD  240

Query  237  eeiqepneeddqennGYQEEIQMDLIDDETSKKTQQHSPQDLSNEETIKANHFedsskes  296
            EE QE NEEDDQENNGYQEE Q +LIDDETSKKTQQHSPQDLSNEE+   NHFEDSSKES
Sbjct  241  EETQELNEEDDQENNGYQEETQTGLIDDETSKKTQQHSPQDLSNEEATEINHFEDSSKES  300

Query  297  kensdHHLDNSTETKTNFDGEKSEEITND  325
            KE+SD  LDN+TETKTNFDG+KSEE   +
Sbjct  301  KESSDPYLDNPTETKTNFDGDKSEETQTQ  329

16) K751_03260 in NC_021218


> JQ685140|1|G1|442739065|AGC69792.1|Helicobacter_pylori_J166_isolate_MJ166sc3|+|1..6174|cagY|-|cag 
pathogenicity island protein 
Y
Length=2057

 Score = 1948 bits (7401),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 1720/1789 (97%), Positives = 1756/1789 (99%), Gaps = 0/1789 (0%)

Query  9     ETSKKTQQHSPQDLSNEETTEANHFedsskeskessdHHLDNPTETKTNFDEYESEETQT  68
             ETSKKTQQHSPQDLSNEE+TE NHFEDSSKESKESSD  LDNPTETKTNFD   SEETQT
Sbjct  269   ETSKKTQQHSPQDLSNEEATEINHFEDSSKESKESSDPYLDNPTETKTNFDGDKSEETQT  328

Query  69    QMDsggnetsessngsLADKLFKKARKLVDNKKPFTQQKNLdeeiqepneeddqennGYQ  128
             QMDSGG+ETSESSNGSLADKLFKKARKLVDNK+PFTQQKNLDEE QE NEEDDQENNGYQ
Sbjct  329   QMDSGGDETSESSNGSLADKLFKKARKLVDNKRPFTQQKNLDEETQELNEEDDQENNGYQ  388

Query  129   EETQMDLIDDETSKKTQQHSPQDLSNEEATEANHFedsskeskessdHHLDNPTEAKTNF  188
             EETQ +LIDDETSKKTQQHSPQDLSNEEATE NHFEDSSKESKESSD  LDNPTE+KTNF
Sbjct  389   EETQTGLIDDETSKKTQQHSPQDLSNEEATEINHFEDSSKESKESSDPYLDNPTETKTNF  448

Query  189   DEYESEEITNDSNDQEiikgskkkyiiggivvavliviilFSRSIFHYFIPLEDKSSRFS  248
             DE  SEEITNDSNDQEIIKGSKKKYIIGGIVVAVLIVIILFSRSIFHYF+PLEDKSSRFS
Sbjct  449   DEDKSEEITNDSNDQEIIKGSKKKYIIGGIVVAVLIVIILFSRSIFHYFMPLEDKSSRFS  508

Query  249   KDRNLYVNDEIQIRQEYNRLLKERNEKGNMIDKNLFFNDDPNRTLYNYLNIAEIEDKNPL  308
             KDRNLYVNDEIQIRQEYNRLLKERNEKGNMIDKNLFFNDDPNRTLYNYLNIAEIEDKNPL
Sbjct  509   KDRNLYVNDEIQIRQEYNRLLKERNEKGNMIDKNLFFNDDPNRTLYNYLNIAEIEDKNPL  568

Query  309   RAFYECISNGGNYEEClklikdkklqdqmkktlEAYNDCIKNAKTEEERIKCLDLIKDEN  368
             RAFYECISNGGNYEECLKLIKDKKLQDQMKKTLEAYNDCIKNAKTEEERIKCLDLIKDEN
Sbjct  569   RAFYECISNGGNYEECLKLIKDKKLQDQMKKTLEAYNDCIKNAKTEEERIKCLDLIKDEN  628

Query  369   LKKSLLNQQKVQVALDCLKNAKTDEERNECLKLINDPEIREKFRKELGLQKELQEYKDCI  428
             LKKSLLNQQKVQVALDCLKNAKTDEER+ECLKLINDPEIREKFRKEL LQKELQEYKDCI
Sbjct  629   LKKSLLNQQKVQVALDCLKNAKTDEERKECLKLINDPEIREKFRKELELQKELQEYKDCI  688

Query  429   KNAKTEDEKNECLKGLSKEAIERLKQQALDCLKNAKTDEERKKCLKNIPQDLQKELLADM  488
             KNAKTE EKNECLKGLSKEAIERLKQQALDCLKNAKTDEER+ CLKNIPQDLQKELLADM
Sbjct  689   KNAKTEAEKNECLKGLSKEAIERLKQQALDCLKNAKTDEERNECLKNIPQDLQKELLADM  748

Query  489   SVKAYKDCVSRARNekekkecekLLTPEAKKKLEQQVLDCLKNAKTDEERKKCLKDLPKD  548
             SVKAYKDCVS+ARNEKEK+ECEKLLTPEA+KKLEQQVLDCLKNAKTDEERKKCLKDLPKD
Sbjct  749   SVKAYKDCVSKARNEKEKQECEKLLTPEARKKLEQQVLDCLKNAKTDEERKKCLKDLPKD  808

Query  549   LQSDILAKESLKAYKDCVSQakteaekkeceklltpeakklleeeakeSVKAYLDCVSQa  608
             LQSDILAKES+KAYKDCVSQAK EAEKKECEKLLTPEAKKLLEEEAKESVKAYLDCVSQA
Sbjct  809   LQSDILAKESVKAYKDCVSQAKNEAEKKECEKLLTPEAKKLLEEEAKESVKAYLDCVSQA  868

Query  609   kteaekkeceklltpeakkkleeakksvkaYLDCVSQakteaekkeceklltPEAKKLLE  668
             KTEAEKKECEKLLTPEA+KKLEEAKKSVKAYLDCVSQAK E EKKECEKLLTPEA+KLLE
Sbjct  869   KTEAEKKECEKLLTPEARKKLEEAKKSVKAYLDCVSQAKNEDEKKECEKLLTPEARKLLE  928

Query  669   QQALDCLKSAKTDEERKKCLKDLPKDLQKKVLAKESVKAYLDCVSQakteaekkecekll  728
             QQALDCLK+AKTDEERKKCLKDLPKDLQKKVLAKESVKAYLDCVSQAKTEAEKKECEKLL
Sbjct  929   QQALDCLKNAKTDEERKKCLKDLPKDLQKKVLAKESVKAYLDCVSQAKTEAEKKECEKLL  988

Query  729   tPEARKLLEEAKESLKAYKDCVSRARNekekkeceklltpeakklleeeakeSVKAYLDC  788
             TPEARKLLEEAKES+KAYKDCVS+ARNEKEKKECEKLLTPEAKKLLEEEAKESVKAYLDC
Sbjct  989   TPEARKLLEEAKESIKAYKDCVSKARNEKEKKECEKLLTPEAKKLLEEEAKESVKAYLDC  1048

Query  789   VSQakteaekkeceklltpeakkkleeakksvkaYLDCVSQakteaekkeceklltPEAK  848
             VSQAKTEAEKKECEKLLTPEAKKKLEEAKKSVKAYLDCVSQAK E EKKECEKLLTPEAK
Sbjct  1049  VSQAKTEAEKKECEKLLTPEAKKKLEEAKKSVKAYLDCVSQAKNEDEKKECEKLLTPEAK  1108

Query  849   NLLEQQALDCLKNAKTESEKKRCVKDLPKDLQKKVLAKESVKAYLDCVSRARNekekkec  908
             +LLEQQALDCLKNAKTE++KKRCVKDLPKDLQKKVLAKESVKAY DCVSRARNEKEKKEC
Sbjct  1109  KLLEQQALDCLKNAKTEADKKRCVKDLPKDLQKKVLAKESVKAYKDCVSRARNEKEKKEC  1168

Query  909   eklltpeakklleeakeslkaYKDCVSQAKTEDEKKECeklltpeakklleeakeslkaY  968
             EKLLTPEAKKLLEEAK S+KAY DCVSQAKTE EKKECEKLLTPEAKKLLEEAKESLKAY
Sbjct  1169  EKLLTPEAKKLLEEAKKSVKAYLDCVSQAKTEAEKKECEKLLTPEAKKLLEEAKESLKAY  1228

Query  969   KDCVSRARNEKEKQECEKLLTPEAKNLLEQQALDCLKNAKTESEKKRCVKDLPKDLQKKV  1028
             KDCVSRARNEKEK+ECEKLLTPEAK+LLEQQALDCLKNAKTE++KKRCVKDLPKDLQKKV
Sbjct  1229  KDCVSRARNEKEKKECEKLLTPEAKKLLEQQALDCLKNAKTEADKKRCVKDLPKDLQKKV  1288

Query  1029  LAKESVKAYLDCVSRARNekekkeceklltpeakklleeakeslkaYKDCLSQARNEEER  1088
             LAKESVKAYLDCVSRARNEKEKKECEKLLTPEAKKLLEEAKESLKAYKDCLSQARNEEER
Sbjct  1289  LAKESVKAYLDCVSRARNEKEKKECEKLLTPEAKKLLEEAKESLKAYKDCLSQARNEEER  1348

Query  1089  RACEKLLTPEAKKLLEQEVKKSVKAYLDCVSRARNEKEKQECEKLLTPEARKFLAKQVLS  1148
             RACEKLLTPEA+KLLEQEVKKSVKAYLDCVS+A+ E EK+ECEKLLTPEARKFLAKQVL+
Sbjct  1349  RACEKLLTPEARKLLEQEVKKSVKAYLDCVSQAKTEAEKKECEKLLTPEARKFLAKQVLN  1408

Query  1149  CLEKARNEEERKACLKNIPKDLQKNVLAKESLKAYKDCLSQARNEEERRACEKLLTPEAR  1208
             CLEKA NEEERKACLKN+PKDLQ NVLAKESLKAYKDCLSQARNEEERRACEKLLTPEAR
Sbjct  1409  CLEKAGNEEERKACLKNLPKDLQENVLAKESLKAYKDCLSQARNEEERRACEKLLTPEAR  1468

Query  1209  KLLEQEVKKSVKAYLDCVSRARNEKEKQECEKLLTPEARKFLAKELQQKDKAIKDCLKNA  1268
             KLLEQEVKKSVKAYLDCVSRARNEKEK+ECEKLLTPEARKFLAKELQQKDKAIKDCLKNA
Sbjct  1469  KLLEQEVKKSVKAYLDCVSRARNEKEKKECEKLLTPEARKFLAKELQQKDKAIKDCLKNA  1528

Query  1269  DPNDRAAIMKCLDGLSDEEKLKYLQEAREKAVLDCLKTARTDEEKRKCQNLYSDLIQEIQ  1328
             DPNDRAAIMKCLDGLSDEEKLKYLQEAREKAVLDCLKTARTDEEKRKCQNLYSDLIQEIQ
Sbjct  1529  DPNDRAAIMKCLDGLSDEEKLKYLQEAREKAVLDCLKTARTDEEKRKCQNLYSDLIQEIQ  1588

Query  1329  NKRTQSKQNQLSKTERLHQASECLDNLDDPTDQEAIEQCLEGLSDSERALILGIKRQADE  1388
             NKRTQSKQNQLSKTERLHQASECLDNLDDPTDQ+AIEQCLEGLSDSERALILGIKRQADE
Sbjct  1589  NKRTQSKQNQLSKTERLHQASECLDNLDDPTDQQAIEQCLEGLSDSERALILGIKRQADE  1648

Query  1389  VDLIYSDLRNRKTFDNMAAKGYPLLPMDFKNGGDIATINATNVDADKIASDNPIYASIEP  1448
             VD IYSDLRNRKTFDNMAAKGYPLLPMDFKNGGDIATINATNVDADKIASDNPIYASIEP
Sbjct  1649  VDRIYSDLRNRKTFDNMAAKGYPLLPMDFKNGGDIATINATNVDADKIASDNPIYASIEP  1708

Query  1449  DITKQYETEKTIkdknleaklakalggnkkdddkekskkstteaktesNKIDKDVAETAK  1508
             DITKQYETEKTIKDKNLEAKLAKALGGNKKDDDKEKSKKST+EAK ESNKIDKDVAETAK
Sbjct  1709  DITKQYETEKTIKDKNLEAKLAKALGGNKKDDDKEKSKKSTAEAKVESNKIDKDVAETAK  1768

Query  1509  NISEIALKNKKEKSGEFVDENGNPIDDKKKTETQDETSPVKQAFIGKSDPTFVLAQYTPI  1568
             NISEIALKNKKEK+GEFVDENGNPIDDKKK+E QDETSPVKQAFIGKSDPTFVLAQYTPI
Sbjct  1769  NISEIALKNKKEKNGEFVDENGNPIDDKKKAEKQDETSPVKQAFIGKSDPTFVLAQYTPI  1828

Query  1569  EITLTSKVDATLTGIVSGVVAKDVWNMNGTMILLDKGTKVYGNYQSVKGGTPIMTRLMIV  1628
             EITLTSKVDATLTGIVSGVVAKDVWNMNGTMILLDKGTKVYGNYQSVKGGTPIMTRLMIV
Sbjct  1829  EITLTSKVDATLTGIVSGVVAKDVWNMNGTMILLDKGTKVYGNYQSVKGGTPIMTRLMIV  1888

Query  1629  FTKAITPDGVIIPLANAQAAGMLGEAGVDGYVNNHFMKRIGFAVIASVVNSFLQTAPIIA  1688
             FTKAITPDGVIIPLANAQAAGMLGEAGVDGYVNNHFMKRIGFAVIASVVNSFLQTAPIIA
Sbjct  1889  FTKAITPDGVIIPLANAQAAGMLGEAGVDGYVNNHFMKRIGFAVIASVVNSFLQTAPIIA  1948

Query  1689  LDKLIGLGKGRSERTPEFNYALGQAINGSMQSSAQMSNQILGQLMNIPPSFYKNEGDSIK  1748
             LDKLIGLGKGRSERTPEFNYALGQAINGSMQSSAQMSNQILGQLMNIPPSFYKNEGDSIK
Sbjct  1949  LDKLIGLGKGRSERTPEFNYALGQAINGSMQSSAQMSNQILGQLMNIPPSFYKNEGDSIK  2008

Query  1749  ILTMDDIDFSGVYDVKITNKSVVDEIIKQSTKTLSREHEEITTSPKGGN  1797
             ILTMDDIDFSGVYDVKITNKSVVDEIIKQSTKTLSREHEEITTSPKGGN
Sbjct  2009  ILTMDDIDFSGVYDVKITNKSVVDEIIKQSTKTLSREHEEITTSPKGGN  2057


 Score =  164 bits (607),  Expect = 3e-41, Method: Compositional matrix adjust.
 Identities = 176/199 (89%), Positives = 183/199 (92%), Gaps = 0/199 (0%)

Query  1    MNEENDKLETSKKTQQHSPQDLSNEETTEANHFedsskeskessdHHLDNPTETKTNFDE  60
            MNEENDKLETSKKTQQHSPQDLSNEE+TE NHFEDSSKESKESSDHHL+NPTETKTNFD 
Sbjct  1    MNEENDKLETSKKTQQHSPQDLSNEEATEINHFEDSSKESKESSDHHLNNPTETKTNFDG  60

Query  61   YESEETQTQMDsggnetsessngsLADKLFKKARKLVDNKKPFTQQKNLdeeiqepneed  120
              SEETQTQMDSGG+ETSESSNGSLADKLFKKARKLVDNK+PFTQQKNLDEE QE NEED
Sbjct  61   DKSEETQTQMDSGGDETSESSNGSLADKLFKKARKLVDNKRPFTQQKNLDEETQELNEED  120

Query  121  dqennGYQEETQMDLIDDETSKKTQQHSPQDLSNEEATEANHFedsskeskessdHHLDN  180
            DQENNGYQEETQ +LIDDETSKKTQQHSPQDLSNEEATE NHFEDSSKESKESSD  LDN
Sbjct  121  DQENNGYQEETQTGLIDDETSKKTQQHSPQDLSNEEATEINHFEDSSKESKESSDPYLDN  180

Query  181  PTEAKTNFDEYESEEITND  199
            PTE+KTNFD   SEE   +
Sbjct  181  PTETKTNFDGDKSEETQTQ  199


 Score =  149 bits (548),  Expect = 2e-36, Method: Compositional matrix adjust.
 Identities = 167/191 (88%), Positives = 173/191 (91%), Gaps = 0/191 (0%)

Query  9    ETSKKTQQHSPQDLSNEETTEANHFedsskeskessdHHLDNPTETKTNFDEYESEETQT  68
            ETSKKTQQHSPQDLSNEE+TE NHFEDSSKESKESSD  LDNPTETKTNFD   SEETQT
Sbjct  139  ETSKKTQQHSPQDLSNEEATEINHFEDSSKESKESSDPYLDNPTETKTNFDGDKSEETQT  198

Query  69   QMDsggnetsessngsLADKLFKKARKLVDNKKPFTQQKNLdeeiqepneeddqennGYQ  128
            QMDSGG+ETSESSNGSLADKLFKKARKLVDNK+PFTQQKNLDEE QE NEEDDQENNGYQ
Sbjct  199  QMDSGGDETSESSNGSLADKLFKKARKLVDNKRPFTQQKNLDEETQELNEEDDQENNGYQ  258

Query  129  EETQMDLIDDETSKKTQQHSPQDLSNEEATEANHFedsskeskessdHHLDNPTEAKTNF  188
            EETQ +LIDDETSKKTQQHSPQDLSNEEATE NHFEDSSKESKESSD  LDNPTE+KTNF
Sbjct  259  EETQTGLIDDETSKKTQQHSPQDLSNEEATEINHFEDSSKESKESSDPYLDNPTETKTNF  318

Query  189  DEYESEEITND  199
            D   SEE   +
Sbjct  319  DGDKSEETQTQ  329

17) HMPREF4655_21077 in NC_017360


> JQ685140|1|G1|442739065|AGC69792.1|Helicobacter_pylori_J166_isolate_MJ166sc3|+|1..6174|cagY|-|cag 
pathogenicity island protein 
Y
Length=2057

 Score = 1932 bits (7339),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 1716/1789 (96%), Positives = 1754/1789 (99%), Gaps = 0/1789 (0%)

Query  9     ETSKKTQQHSPQDLSNEEATEANHFedsskeskerseHHLDNPTETKTNFDEYESEETQT  68
             ETSKKTQQHSPQDLSNEEATE NHFEDSSKESKE S+  LDNPTETKTNFD   SEETQT
Sbjct  269   ETSKKTQQHSPQDLSNEEATEINHFEDSSKESKESSDPYLDNPTETKTNFDGDKSEETQT  328

Query  69    QMDsggnetsessngsLADKLFKKARKLVDNKRPFTQQKNLdeeiqepneeddqennGYQ  128
             QMDSGG+ETSESSNGSLADKLFKKARKLVDNKRPFTQQKNLDEE QE NEEDDQENNGYQ
Sbjct  329   QMDSGGDETSESSNGSLADKLFKKARKLVDNKRPFTQQKNLDEETQELNEEDDQENNGYQ  388

Query  129   EETQMDLIDDETSKKTQQHSPQDLSNEEATEANHFEDsskeskesseHHLDNPTETKTNF  188
             EETQ +LIDDETSKKTQQHSPQDLSNEEATE NHFEDSSKESKESS+  LDNPTETKTNF
Sbjct  389   EETQTGLIDDETSKKTQQHSPQDLSNEEATEINHFEDSSKESKESSDPYLDNPTETKTNF  448

Query  189   DEYESEEITNDSNDQEiikgskkkyiiggivvavliviilFSRSIFHYFMPLEDKSSRFS  248
             DE  SEEITNDSNDQEIIKGSKKKYIIGGIVVAVLIVIILFSRSIFHYFMPLEDKSSRFS
Sbjct  449   DEDKSEEITNDSNDQEIIKGSKKKYIIGGIVVAVLIVIILFSRSIFHYFMPLEDKSSRFS  508

Query  249   KDRNLYVNDEIQIRQEYNRLLKERNEKGNMIDKNLFFNDDPNRTLYNYLNIAEIEDKNPL  308
             KDRNLYVNDEIQIRQEYNRLLKERNEKGNMIDKNLFFNDDPNRTLYNYLNIAEIEDKNPL
Sbjct  509   KDRNLYVNDEIQIRQEYNRLLKERNEKGNMIDKNLFFNDDPNRTLYNYLNIAEIEDKNPL  568

Query  309   RDFYECISNGGNYEEClklikdkklqdqmkktlEAYNDCIKNAKTEEERIKCLDLIKDEN  368
             R FYECISNGGNYEECLKLIKDKKLQDQMKKTLEAYNDCIKNAKTEEERIKCLDLIKDEN
Sbjct  569   RAFYECISNGGNYEECLKLIKDKKLQDQMKKTLEAYNDCIKNAKTEEERIKCLDLIKDEN  628

Query  369   LKKSLLNQQKVQVALDCLKNAKTDEERNECLKLINDPEIREKFRKELGLQKELQEYKDCI  428
             LKKSLLNQQKVQVALDCLKNAKTDEER+ECLKLINDPEIREKFRKEL LQKELQEYKDCI
Sbjct  629   LKKSLLNQQKVQVALDCLKNAKTDEERKECLKLINDPEIREKFRKELELQKELQEYKDCI  688

Query  429   KNAKTEAEKNECLKGLSKEAIERLKQQALDCLKNAKTDEERKECLKNIPQDLQKELLADM  488
             KNAKTEAEKNECLKGLSKEAIERLKQQALDCLKNAKTDEER+ECLKNIPQDLQKELLADM
Sbjct  689   KNAKTEAEKNECLKGLSKEAIERLKQQALDCLKNAKTDEERNECLKNIPQDLQKELLADM  748

Query  489   SVKAYKDCVSKARNekekkecekLLTPEAKKKLEQQVLDCLKNAKTDEERKKCLKDLPKD  548
             SVKAYKDCVSKARNEKEK+ECEKLLTPEA+KKLEQQVLDCLKNAKTDEERKKCLKDLPKD
Sbjct  749   SVKAYKDCVSKARNEKEKQECEKLLTPEARKKLEQQVLDCLKNAKTDEERKKCLKDLPKD  808

Query  549   LQSDILAKESLKAYKDCVSRARNekekkeceklltpeakklleeeakeSVKAYLDCVSQa  608
             LQSDILAKES+KAYKDCVS+A+NE EKKECEKLLTPEAKKLLEEEAKESVKAYLDCVSQA
Sbjct  809   LQSDILAKESVKAYKDCVSQAKNEAEKKECEKLLTPEAKKLLEEEAKESVKAYLDCVSQA  868

Query  609   kteaekkeceklltpeakkkleeakksvkaYLDCVSQakteaekkeceklltPEAKKLLE  668
             KTEAEKKECEKLLTPEA+KKLEEAKKSVKAYLDCVSQAK E EKKECEKLLTPEA+KLLE
Sbjct  869   KTEAEKKECEKLLTPEARKKLEEAKKSVKAYLDCVSQAKNEDEKKECEKLLTPEARKLLE  928

Query  669   RQALDCLKNAKTDEERKKCLKDLPKDLQKKVLAKESVKAYLDCVSQakteaekkecekll  728
             +QALDCLKNAKTDEERKKCLKDLPKDLQKKVLAKESVKAYLDCVSQAKTEAEKKECEKLL
Sbjct  929   QQALDCLKNAKTDEERKKCLKDLPKDLQKKVLAKESVKAYLDCVSQAKTEAEKKECEKLL  988

Query  729   tpeakklleeakeslkaYKDCVSRARNekekkeceklltpeakklleeeakeSVKAYLDC  788
             TPEA+KLLEEAKES+KAYKDCVS+ARNEKEKKECEKLLTPEAKKLLEEEAKESVKAYLDC
Sbjct  989   TPEARKLLEEAKESIKAYKDCVSKARNEKEKKECEKLLTPEAKKLLEEEAKESVKAYLDC  1048

Query  789   VSQakteaekkeceklltpeakkkleeakksvkaYLDCVSQakteaekkeceklltPEAK  848
             VSQAKTEAEKKECEKLLTPEAKKKLEEAKKSVKAYLDCVSQAK E EKKECEKLLTPEAK
Sbjct  1049  VSQAKTEAEKKECEKLLTPEAKKKLEEAKKSVKAYLDCVSQAKNEDEKKECEKLLTPEAK  1108

Query  849   KLLERQALDCLKNAKTDEERKRCVKDLPKDLQKKVLAKKSVKAYKDCVSRARNekekkec  908
             KLLE+QALDCLKNAKT+ ++KRCVKDLPKDLQKKVLAK SVKAYKDCVSRARNEKEKKEC
Sbjct  1109  KLLEQQALDCLKNAKTEADKKRCVKDLPKDLQKKVLAKESVKAYKDCVSRARNEKEKKEC  1168

Query  909   eklltpeakklleeakeslkaYKDCVSRARNekekkeceklltpeakklleeakeslkaY  968
             EKLLTPEAKKLLEEAK S+KAY DCVS+A+ E EKKECEKLLTPEAKKLLEEAKESLKAY
Sbjct  1169  EKLLTPEAKKLLEEAKKSVKAYLDCVSQAKTEAEKKECEKLLTPEAKKLLEEAKESLKAY  1228

Query  969   KDCVSRARNEKEKKECEQLLTPEAKKLLEQQALDCLKNAKTEAEKKRCVKDLPKDLQKKV  1028
             KDCVSRARNEKEKKECE+LLTPEAKKLLEQQALDCLKNAKTEA+KKRCVKDLPKDLQKKV
Sbjct  1229  KDCVSRARNEKEKKECEKLLTPEAKKLLEQQALDCLKNAKTEADKKRCVKDLPKDLQKKV  1288

Query  1029  LAKESVKAYLDCVSRARNEKEKKECEQLLTPeakklleeakeslkaYKDCLSQARNEEER  1088
             LAKESVKAYLDCVSRARNEKEKKECE+LLTPEAKKLLEEAKESLKAYKDCLSQARNEEER
Sbjct  1289  LAKESVKAYLDCVSRARNEKEKKECEKLLTPEAKKLLEEAKESLKAYKDCLSQARNEEER  1348

Query  1089  RACEKLLTPEAKKLLEQEVKKSVKAYLDCVSKARNEKEKQECEKLLTPEARKFLAKQVLS  1148
             RACEKLLTPEA+KLLEQEVKKSVKAYLDCVS+A+ E EK+ECEKLLTPEARKFLAKQVL+
Sbjct  1349  RACEKLLTPEARKLLEQEVKKSVKAYLDCVSQAKTEAEKKECEKLLTPEARKFLAKQVLN  1408

Query  1149  CLEKARNEEERKACLKNIPKDLQKNVLAKESLKAYKDCLSQARNEEERRACEKLLTPEAR  1208
             CLEKA NEEERKACLKN+PKDLQ NVLAKESLKAYKDCLSQARNEEERRACEKLLTPEAR
Sbjct  1409  CLEKAGNEEERKACLKNLPKDLQENVLAKESLKAYKDCLSQARNEEERRACEKLLTPEAR  1468

Query  1209  KLLEQEVKKSVKAYLDCVSRARNEKEKQECEKLLTPEARKFLAKELQQKDKAIKDCLKNA  1268
             KLLEQEVKKSVKAYLDCVSRARNEKEK+ECEKLLTPEARKFLAKELQQKDKAIKDCLKNA
Sbjct  1469  KLLEQEVKKSVKAYLDCVSRARNEKEKKECEKLLTPEARKFLAKELQQKDKAIKDCLKNA  1528

Query  1269  DPNDRAAIMKCLDGLSDEEKLKYLQEAREKAVLDCLKTARTDEEKRKCQNLYSDLIQEIQ  1328
             DPNDRAAIMKCLDGLSDEEKLKYLQEAREKAVLDCLKTARTDEEKRKCQNLYSDLIQEIQ
Sbjct  1529  DPNDRAAIMKCLDGLSDEEKLKYLQEAREKAVLDCLKTARTDEEKRKCQNLYSDLIQEIQ  1588

Query  1329  NKRIQSKQNQLSKTERLHQASECLDNLDDPTDQEAIEQCLEGLSDSERALILGIKRQADE  1388
             NKR QSKQNQLSKTERLHQASECLDNLDDPTDQ+AIEQCLEGLSDSERALILGIKRQADE
Sbjct  1589  NKRTQSKQNQLSKTERLHQASECLDNLDDPTDQQAIEQCLEGLSDSERALILGIKRQADE  1648

Query  1389  VDLIYSDLRNRKTFDNMAAKGYPLLPMDFKNGGDIATINATNVDADKIASDNPIYASIEP  1448
             VD IYSDLRNRKTFDNMAAKGYPLLPMDFKNGGDIATINATNVDADKIASDNPIYASIEP
Sbjct  1649  VDRIYSDLRNRKTFDNMAAKGYPLLPMDFKNGGDIATINATNVDADKIASDNPIYASIEP  1708

Query  1449  DITKQYETEKTIkdknleaklakalggnkkdddkekskksTAEARVESNKIDKDVAETAK  1508
             DITKQYETEKTIKDKNLEAKLAKALGGNKKDDDKEKSKKSTAEA+VESNKIDKDVAETAK
Sbjct  1709  DITKQYETEKTIKDKNLEAKLAKALGGNKKDDDKEKSKKSTAEAKVESNKIDKDVAETAK  1768

Query  1509  NISEIALKNKKEKSGEFVDENGNPIDDKKKTETQDETSPVKQAFIGKSDPTFVLAQYTPI  1568
             NISEIALKNKKEK+GEFVDENGNPIDDKKK+E QDETSPVKQAFIGKSDPTFVLAQYTPI
Sbjct  1769  NISEIALKNKKEKNGEFVDENGNPIDDKKKAEKQDETSPVKQAFIGKSDPTFVLAQYTPI  1828

Query  1569  EITLTSKVDATLTGIVSGVVAKDVWNMNGTMILLDKGTKVYGNYQSVKGGTPIMTRLMIV  1628
             EITLTSKVDATLTGIVSGVVAKDVWNMNGTMILLDKGTKVYGNYQSVKGGTPIMTRLMIV
Sbjct  1829  EITLTSKVDATLTGIVSGVVAKDVWNMNGTMILLDKGTKVYGNYQSVKGGTPIMTRLMIV  1888

Query  1629  FTKAITPDGVIIPLANAQAAGMLGEAGVDGYVNNHFMKRIGFAVIASVVNSFLQTAPIIA  1688
             FTKAITPDGVIIPLANAQAAGMLGEAGVDGYVNNHFMKRIGFAVIASVVNSFLQTAPIIA
Sbjct  1889  FTKAITPDGVIIPLANAQAAGMLGEAGVDGYVNNHFMKRIGFAVIASVVNSFLQTAPIIA  1948

Query  1689  LDKLIGLGKGRSERTPEFNYALGQAINGSMQSSAQMSNQILGQLMNIPPSFYKNEGDSIK  1748
             LDKLIGLGKGRSERTPEFNYALGQAINGSMQSSAQMSNQILGQLMNIPPSFYKNEGDSIK
Sbjct  1949  LDKLIGLGKGRSERTPEFNYALGQAINGSMQSSAQMSNQILGQLMNIPPSFYKNEGDSIK  2008

Query  1749  ILTMDDIDFSGVYDVKITNKSVVDEIIKQSTKTLSREHEEITTSPKGGN  1797
             ILTMDDIDFSGVYDVKITNKSVVDEIIKQSTKTLSREHEEITTSPKGGN
Sbjct  2009  ILTMDDIDFSGVYDVKITNKSVVDEIIKQSTKTLSREHEEITTSPKGGN  2057


 Score =  167 bits (616),  Expect = 6e-42, Method: Compositional matrix adjust.
 Identities = 176/199 (89%), Positives = 182/199 (92%), Gaps = 0/199 (0%)

Query  1    MNEENDKLETSKKTQQHSPQDLSNEEATEANHFedsskeskerseHHLDNPTETKTNFDE  60
            MNEENDKLETSKKTQQHSPQDLSNEEATE NHFEDSSKESKE S+HHL+NPTETKTNFD 
Sbjct  1    MNEENDKLETSKKTQQHSPQDLSNEEATEINHFEDSSKESKESSDHHLNNPTETKTNFDG  60

Query  61   YESEETQTQMDsggnetsessngsLADKLFKKARKLVDNKRPFTQQKNLdeeiqepneed  120
              SEETQTQMDSGG+ETSESSNGSLADKLFKKARKLVDNKRPFTQQKNLDEE QE NEED
Sbjct  61   DKSEETQTQMDSGGDETSESSNGSLADKLFKKARKLVDNKRPFTQQKNLDEETQELNEED  120

Query  121  dqennGYQEETQMDLIDDETSKKTQQHSPQDLSNEEATEANHFEDsskeskesseHHLDN  180
            DQENNGYQEETQ +LIDDETSKKTQQHSPQDLSNEEATE NHFEDSSKESKESS+  LDN
Sbjct  121  DQENNGYQEETQTGLIDDETSKKTQQHSPQDLSNEEATEINHFEDSSKESKESSDPYLDN  180

Query  181  PTETKTNFDEYESEEITND  199
            PTETKTNFD   SEE   +
Sbjct  181  PTETKTNFDGDKSEETQTQ  199


 Score =  151 bits (557),  Expect = 3e-37, Method: Compositional matrix adjust.
 Identities = 167/191 (88%), Positives = 172/191 (91%), Gaps = 0/191 (0%)

Query  9    ETSKKTQQHSPQDLSNEEATEANHFedsskeskerseHHLDNPTETKTNFDEYESEETQT  68
            ETSKKTQQHSPQDLSNEEATE NHFEDSSKESKE S+  LDNPTETKTNFD   SEETQT
Sbjct  139  ETSKKTQQHSPQDLSNEEATEINHFEDSSKESKESSDPYLDNPTETKTNFDGDKSEETQT  198

Query  69   QMDsggnetsessngsLADKLFKKARKLVDNKRPFTQQKNLdeeiqepneeddqennGYQ  128
            QMDSGG+ETSESSNGSLADKLFKKARKLVDNKRPFTQQKNLDEE QE NEEDDQENNGYQ
Sbjct  199  QMDSGGDETSESSNGSLADKLFKKARKLVDNKRPFTQQKNLDEETQELNEEDDQENNGYQ  258

Query  129  EETQMDLIDDETSKKTQQHSPQDLSNEEATEANHFEDsskeskesseHHLDNPTETKTNF  188
            EETQ +LIDDETSKKTQQHSPQDLSNEEATE NHFEDSSKESKESS+  LDNPTETKTNF
Sbjct  259  EETQTGLIDDETSKKTQQHSPQDLSNEEATEINHFEDSSKESKESSDPYLDNPTETKTNF  318

Query  189  DEYESEEITND  199
            D   SEE   +
Sbjct  319  DGDKSEETQTQ  329

18) cag7 in NC_020509


> JQ685140|1|G1|442739065|AGC69792.1|Helicobacter_pylori_J166_isolate_MJ166sc3|+|1..6174|cagY|-|cag 
pathogenicity island protein 
Y
Length=2057

 Score = 1925 bits (7313),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 1752/1928 (91%), Positives = 1809/1928 (94%), Gaps = 48/1928 (2%)

Query  9     ETSKKTQQHSPQDLSNEETTEANRFedsskeskessdHHLDNPTETKTNFDEYKSEETQT  68
             ETSKKTQQHSPQDLSNEE+TE N+FEDSSKESKESSD  LDNPTETKTNFD  KSEETQT
Sbjct  139   ETSKKTQQHSPQDLSNEEATEINHFEDSSKESKESSDPYLDNPTETKTNFDGDKSEETQT  198

Query  69    QMDsegnetsessngsLADKLFKKARKLVDNKRPFTQQKnldeeiqepneednqennGYQ  128
             QMDS G+ETSESSNGSLADKLFKKARKLVDNKRPFTQQKNLDEE QE NEED+QENNGYQ
Sbjct  199   QMDSGGDETSESSNGSLADKLFKKARKLVDNKRPFTQQKNLDEETQELNEEDDQENNGYQ  258

Query  129   EETQMDLIDDETSKKTQQHSPQDLSNEETTKANRFedsskeskessdHHLDNPTETKTNF  188
             EETQ +LIDDETSKKTQQHSPQDLSNEE+T  N+FEDSSKESKESSD  LDNPTETKTNF
Sbjct  259   EETQTGLIDDETSKKTQQHSPQDLSNEEATEINHFEDSSKESKESSDPYLDNPTETKTNF  318

Query  189   DEYESEETQTQMDsggnetsessngsLADKLFKKARKLVDNKRPFTQQKNLdeeiqepne  248
             D   SEETQTQMDSGG+ETSESSNGSLADKLFKKARKLVDNKRPFTQQKNLDEE QE NE
Sbjct  319   DGDKSEETQTQMDSGGDETSESSNGSLADKLFKKARKLVDNKRPFTQQKNLDEETQELNE  378

Query  249   eddqennGYQEETQMDLIDDETSKKTQQHSPQDLSNEEATEANRFedsskeskessdHHL  308
             EDDQENNGYQEETQ +LIDDETSKKTQQHSPQDLSNEEATE N+FEDSSKESKESSD  L
Sbjct  379   EDDQENNGYQEETQTGLIDDETSKKTQQHSPQDLSNEEATEINHFEDSSKESKESSDPYL  438

Query  309   DNPTETKTNFDEYESEEITNDSNDQEiikgskkkyiiggivvavliviilFSRSIFHYFM  368
             DNPTETKTNFDE  SEEITNDSNDQEIIKGSKKKYIIGGIVVAVLIVIILFSRSIFHYFM
Sbjct  439   DNPTETKTNFDEDKSEEITNDSNDQEIIKGSKKKYIIGGIVVAVLIVIILFSRSIFHYFM  498

Query  369   PLEDKSSRFSKDRNLYVNDEIQIRQEYNRLLKERNEKGNMIDKNLFFNDDPNRTLYNYLN  428
             PLEDKSSRFSKDRNLYVNDEIQIRQEYNRLLKERNEKGNMIDKNLFFNDDPNRTLYNYLN
Sbjct  499   PLEDKSSRFSKDRNLYVNDEIQIRQEYNRLLKERNEKGNMIDKNLFFNDDPNRTLYNYLN  558

Query  429   IAEIEDKNPLRAFYECISNGGNYEEClklikdkklqdqmkktlEAYNDCIKNAKTEEERI  488
             IAEIEDKNPLRAFYECISNGGNYEECLKLIKDKKLQDQMKKTLEAYNDCIKNAKTEEERI
Sbjct  559   IAEIEDKNPLRAFYECISNGGNYEECLKLIKDKKLQDQMKKTLEAYNDCIKNAKTEEERI  618

Query  489   KCLDLIKDENLKKSLLNQQKVQVALDCLKNAKTDEERNECLKLINDPEIREKFRKELGLQ  548
             KCLDLIKDENLKKSLLNQQKVQVALDCLKNAKTDEER+ECLKLINDPEIREKFRKEL LQ
Sbjct  619   KCLDLIKDENLKKSLLNQQKVQVALDCLKNAKTDEERKECLKLINDPEIREKFRKELELQ  678

Query  549   KELQEYKDCIKNAKTEAEKNECLKGLSKEAIERLKQQALDCLKNAKTDEERKECLKNIPQ  608
             KELQEYKDCIKNAKTEAEKNECLKGLSKEAIERLKQQALDCLKNAKTDEER+ECLKNIPQ
Sbjct  679   KELQEYKDCIKNAKTEAEKNECLKGLSKEAIERLKQQALDCLKNAKTDEERNECLKNIPQ  738

Query  609   DLQKELLADMSVKAYKDCVSKARNekekkecekLLTPEAKKKLEQQVLDCLKNAKTDEER  668
             DLQKELLADMSVKAYKDCVSKARNEKEK+ECEKLLTPEA+KKLEQQVLDCLKNAKTDEER
Sbjct  739   DLQKELLADMSVKAYKDCVSKARNEKEKQECEKLLTPEARKKLEQQVLDCLKNAKTDEER  798

Query  669   KKCLKDLPKDLQSDILAKESLKAYKDCVSQAKTEDEKKECeklltpeakklleeeakeSV  728
             KKCLKDLPKDLQSDILAKES+KAYKDCVSQAK E EKKECEKLLTPEAKKLLEEEAKESV
Sbjct  799   KKCLKDLPKDLQSDILAKESVKAYKDCVSQAKNEAEKKECEKLLTPEAKKLLEEEAKESV  858

Query  729   KAYLDCVSQakteaekkeceklltpeakkkleeakksvkaYLDCVSQakteaekkecekl  788
             KAYLDCVSQAKTEAEKKECEKLLTPEA+KKLEEAKKSVKAYLDCVSQAK E EKKECEKL
Sbjct  859   KAYLDCVSQAKTEAEKKECEKLLTPEARKKLEEAKKSVKAYLDCVSQAKNEDEKKECEKL  918

Query  789   ltPEAKKLLERQALDCLKNAKTDEERKKCLKDLPKDLQKKVLA-----------------  831
             LTPEA+KLLE+QALDCLKNAKTDEERKKCLKDLPKDLQKKVLA                 
Sbjct  919   LTPEARKLLEQQALDCLKNAKTDEERKKCLKDLPKDLQKKVLAKESVKAYLDCVSQAKTE  978

Query  832   ---------------------KESVKAYLDCVSQakteaekkeceklltpeakkl-leea  869
                                  KES+KAY DCVS+A+ E EKKECEKLLTPEAKKL  EEA
Sbjct  979   AEKKECEKLLTPEARKLLEEAKESIKAYKDCVSKARNEKEKKECEKLLTPEAKKLLEEEA  1038

Query  870   keslkaYKDCLSQARNEEERRACEKLLTPEAKKLLEQEVKKSVKAYLDCISKARNEREKQ  929
             KES+KAY DC+SQA+ E E++ CEKLLTPEAKK   +E KKSVKAYLDC+S+A+NE EK+
Sbjct  1039  KESVKAYLDCVSQAKTEAEKKECEKLLTPEAKKK-LEEAKKSVKAYLDCVSQAKNEDEKK  1097

Query  930   ECeklltpeakklleeakeslkaYKDCVSRARNekekkeceklltpeakklleeeakeSV  989
             ECEKLLTPEAKKLLE+         DC+  A+ E +KK C K L  + +K +      SV
Sbjct  1098  ECEKLLTPEAKKLLEQQAL------DCLKNAKTEADKKRCVKDLPKDLQKKVLAKE--SV  1149

Query  990   KAYLDCVSQakteaekkeceklltpeakklleeakksvkaYLDCVSQakteaekkecekl  1049
             KAY DCVS+A+ E EKKECEKLLTPEAKKLLEEAKKSVKAYLDCVSQAKTEAEKKECEKL
Sbjct  1150  KAYKDCVSRARNEKEKKECEKLLTPEAKKLLEEAKKSVKAYLDCVSQAKTEAEKKECEKL  1209

Query  1050  ltpeakklleeakksvkaYLDCVSQakteaekkeceklltPEAKKLLEQQALDCLKNAKT  1109
             LTPEAKKLLEEAK S+KAY DCVS+A+ E EKKECEKLLTPEAKKLLEQQALDCLKNAKT
Sbjct  1210  LTPEAKKLLEEAKESLKAYKDCVSRARNEKEKKECEKLLTPEAKKLLEQQALDCLKNAKT  1269

Query  1110  EAEKKRCVKDIPKDLQKKVLAKESVKAYLDCVSRARNekekkeceklltpeakklleeak  1169
             EA+KKRCVKD+PKDLQKKVLAKESVKAYLDCVSRARNEKEKKECEKLLTPEAKKLLEEAK
Sbjct  1270  EADKKRCVKDLPKDLQKKVLAKESVKAYLDCVSRARNEKEKKECEKLLTPEAKKLLEEAK  1329

Query  1170  eslkaYKDCLSQARNEEERRACEKLLTPEAKKLLEQEVKKSVKAYLDCVSKARNEREKQE  1229
             ESLKAYKDCLSQARNEEERRACEKLLTPEA+KLLEQEVKKSVKAYLDCVS+A+ E EK+E
Sbjct  1330  ESLKAYKDCLSQARNEEERRACEKLLTPEARKLLEQEVKKSVKAYLDCVSQAKTEAEKKE  1389

Query  1230  CEKLLTPEARKFLAKQVLSCLEKARNEEERKACLKNIPKDLQKNVLAKESLKAYKDCLSQ  1289
             CEKLLTPEARKFLAKQVL+CLEKA NEEERKACLKN+PKDLQ NVLAKESLKAYKDCLSQ
Sbjct  1390  CEKLLTPEARKFLAKQVLNCLEKAGNEEERKACLKNLPKDLQENVLAKESLKAYKDCLSQ  1449

Query  1290  ARNEEERRACEKLLTPEARKLLEQEVKKSVKAYLDCVSKARNEKEKQECEKLLTPEARKF  1349
             ARNEEERRACEKLLTPEARKLLEQEVKKSVKAYLDCVS+ARNEKEK+ECEKLLTPEARKF
Sbjct  1450  ARNEEERRACEKLLTPEARKLLEQEVKKSVKAYLDCVSRARNEKEKKECEKLLTPEARKF  1509

Query  1350  LAKELQQKDKAIKDCLKNADPNDRAAIMKCLDGLSDEEKLKYLQEAREKAVLDCLKTART  1409
             LAKELQQKDKAIKDCLKNADPNDRAAIMKCLDGLSDEEKLKYLQEAREKAVLDCLKTART
Sbjct  1510  LAKELQQKDKAIKDCLKNADPNDRAAIMKCLDGLSDEEKLKYLQEAREKAVLDCLKTART  1569

Query  1410  DEEKRKCQNLYSDLIQEIQNKRTQSKQNQLSKTERLHQASECLDNLDDPTDQEAIEQCLE  1469
             DEEKRKCQNLYSDLIQEIQNKRTQSKQNQLSKTERLHQASECLDNLDDPTDQ+AIEQCLE
Sbjct  1570  DEEKRKCQNLYSDLIQEIQNKRTQSKQNQLSKTERLHQASECLDNLDDPTDQQAIEQCLE  1629

Query  1470  GLSDSERALILGIKRQADEVDLIYSDLRNRKTFDNMAAKGYPLLPMDFKNGGDIATINAT  1529
             GLSDSERALILGIKRQADEVD IYSDLRNRKTFDNMAAKGYPLLPMDFKNGGDIATINAT
Sbjct  1630  GLSDSERALILGIKRQADEVDRIYSDLRNRKTFDNMAAKGYPLLPMDFKNGGDIATINAT  1689

Query  1530  NVDADKIASDNPIYASIEPDITKQYETEKTIKDKNLEAKLANALGGNkkdddkekskkst  1589
             NVDADKIASDNPIYASIEPDITKQYETEKTIKDKNLEAKLA+ALGGNKKDDDKEKSKKST
Sbjct  1690  NVDADKIASDNPIYASIEPDITKQYETEKTIKDKNLEAKLAKALGGNKKDDDKEKSKKST  1749

Query  1590  aeakvesNKIDKDVAETAKNISEIALKNKKEKSGEFVDENGNPIddkkktekqdetSPVK  1649
             AEAKVESNKIDKDVAETAKNISEIALKNKKEK+GEFVDENGNPIDDKKK+EKQDETSPVK
Sbjct  1750  AEAKVESNKIDKDVAETAKNISEIALKNKKEKNGEFVDENGNPIDDKKKAEKQDETSPVK  1809

Query  1650  QAFIGKSDPTFVLAQYTPIEITLTSKVDATLTGIVSGVVAKDVWNMNGTMILLDKGTKVY  1709
             QAFIGKSDPTFVLAQYTPIEITLTSKVDATLTGIVSGVVAKDVWNMNGTMILLDKGTKVY
Sbjct  1810  QAFIGKSDPTFVLAQYTPIEITLTSKVDATLTGIVSGVVAKDVWNMNGTMILLDKGTKVY  1869

Query  1710  GNYQSVKGGTPIMTRLMIVFTKAITPDGVIIPLANAQAAGMLGEAGVDGYVNNHFMKRIG  1769
             GNYQSVKGGTPIMTRLMIVFTKAITPDGVIIPLANAQAAGMLGEAGVDGYVNNHFMKRIG
Sbjct  1870  GNYQSVKGGTPIMTRLMIVFTKAITPDGVIIPLANAQAAGMLGEAGVDGYVNNHFMKRIG  1929

Query  1770  FAVIASVVNSFLQTAPIIALDKLIGLGKGRSERTPEFNYALGQAINGSMQSSAQMSNQIL  1829
             FAVIASVVNSFLQTAPIIALDKLIGLGKGRSERTPEFNYALGQAINGSMQSSAQMSNQIL
Sbjct  1930  FAVIASVVNSFLQTAPIIALDKLIGLGKGRSERTPEFNYALGQAINGSMQSSAQMSNQIL  1989

Query  1830  GQLMNIPPSFYKNEGDSIKILTMDDIDFSGVYDVKITNKSVVDEIIKQSTKTLSREHEEI  1889
             GQLMNIPPSFYKNEGDSIKILTMDDIDFSGVYDVKITNKSVVDEIIKQSTKTLSREHEEI
Sbjct  1990  GQLMNIPPSFYKNEGDSIKILTMDDIDFSGVYDVKITNKSVVDEIIKQSTKTLSREHEEI  2049

Query  1890  TTSPKGGN  1897
             TTSPKGGN
Sbjct  2050  TTSPKGGN  2057


 Score =  256 bits (957),  Expect = 8e-69, Method: Compositional matrix adjust.
 Identities = 290/326 (89%), Positives = 302/326 (93%), Gaps = 0/326 (0%)

Query  1    MNEENDKFETSKKTQQHSPQDLSNEETTEANRFedsskeskessdHHLDNPTETKTNFDE  60
            MNEENDK+ETSKKTQQHSPQDLSNEE+TE N+FEDSSKESKESSDHHL+NPTETKTNFD 
Sbjct  1    MNEENDKLETSKKTQQHSPQDLSNEEATEINHFEDSSKESKESSDHHLNNPTETKTNFDG  60

Query  61   YKSEETQTQMDsegnetsessngsLADKLFKKARKLVDNKRPFTQQKnldeeiqepneed  120
             KSEETQTQMDS G+ETSESSNGSLADKLFKKARKLVDNKRPFTQQKNLDEE QE NEED
Sbjct  61   DKSEETQTQMDSGGDETSESSNGSLADKLFKKARKLVDNKRPFTQQKNLDEETQELNEED  120

Query  121  nqennGYQEETQMDLIDDETSKKTQQHSPQDLSNEETTKANRFedsskeskessdHHLDN  180
            +QENNGYQEETQ +LIDDETSKKTQQHSPQDLSNEE+T  N+FEDSSKESKESSD  LDN
Sbjct  121  DQENNGYQEETQTGLIDDETSKKTQQHSPQDLSNEEATEINHFEDSSKESKESSDPYLDN  180

Query  181  PTETKTNFDEYESEETQTQMDsggnetsessngsLADKLFKKARKLVDNKRPFTQQKNLd  240
            PTETKTNFD   SEETQTQMDSGG+ETSESSNGSLADKLFKKARKLVDNKRPFTQQKNLD
Sbjct  181  PTETKTNFDGDKSEETQTQMDSGGDETSESSNGSLADKLFKKARKLVDNKRPFTQQKNLD  240

Query  241  eeiqepneeddqennGYQEETQMDLIDDETSKKTQQHSPQDLSNEEATEANRFedsskes  300
            EE QE NEEDDQENNGYQEETQ +LIDDETSKKTQQHSPQDLSNEEATE N+FEDSSKES
Sbjct  241  EETQELNEEDDQENNGYQEETQTGLIDDETSKKTQQHSPQDLSNEEATEINHFEDSSKES  300

Query  301  kessdHHLDNPTETKTNFDEYESEEI  326
            KESSD  LDNPTETKTNFD   SEE 
Sbjct  301  KESSDPYLDNPTETKTNFDGDKSEET  326

19) cagY in NC_017367


> JQ685140|1|G1|442739065|AGC69792.1|Helicobacter_pylori_J166_isolate_MJ166sc3|+|1..6174|cagY|-|cag 
pathogenicity island protein 
Y
Length=2057

 Score = 1921 bits (7298),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 1706/1789 (96%), Positives = 1752/1789 (98%), Gaps = 0/1789 (0%)

Query  9     ETSKKTQQHSPQDLSNEEATEANHFedsskeskessdHHLDNPTETKTNFDEYELEETQT  68
             ETSKKTQQHSPQDLSNEEATE NHFEDSSKESKESSD  LDNPTETKTNFD    EETQT
Sbjct  269   ETSKKTQQHSPQDLSNEEATEINHFEDSSKESKESSDPYLDNPTETKTNFDGDKSEETQT  328

Query  69    QMDsggnetsessngsLADKLFKKARKLVDNKKPFTQQKNLdeeiqepneeddqennGYQ  128
             QMDSGG+ETSESSNGSLADKLFKKARKLVDNK+PFTQQKNLDEE QE NEEDDQENNGYQ
Sbjct  329   QMDSGGDETSESSNGSLADKLFKKARKLVDNKRPFTQQKNLDEETQELNEEDDQENNGYQ  388

Query  129   EETQMDLIDDETSKKTQQHSPQDLSNEEATEANHFedsskeskessdHHLDNYTEAKTNF  188
             EETQ +LIDDETSKKTQQHSPQDLSNEEATE NHFEDSSKESKESSD  LDN TE+KTNF
Sbjct  389   EETQTGLIDDETSKKTQQHSPQDLSNEEATEINHFEDSSKESKESSDPYLDNPTETKTNF  448

Query  189   DEYESEEITNDSNDQEiikgskkkyiiggivvavliviilFSRSIFHYFIPLEDKSSRFS  248
             DE  SEEITNDSNDQEIIKGSKKKYIIGGIVVAVLIVIILFSRSIFHYF+PLEDKSSRFS
Sbjct  449   DEDKSEEITNDSNDQEIIKGSKKKYIIGGIVVAVLIVIILFSRSIFHYFMPLEDKSSRFS  508

Query  249   KDRNLYVNDEIQIRQEYNRLLKERNEKGNMIDKNLFFNDDPNRTLYNYLNIAEIEDKNPL  308
             KDRNLYVNDEIQIRQEYNRLLKERNEKGNMIDKNLFFNDDPNRTLYNYLNIAEIEDKNPL
Sbjct  509   KDRNLYVNDEIQIRQEYNRLLKERNEKGNMIDKNLFFNDDPNRTLYNYLNIAEIEDKNPL  568

Query  309   RAFYECISNGGNYEEClklikdkklqdqmkktlEAYKDCIKNAKTEEERIKCLDLIKDEN  368
             RAFYECISNGGNYEECLKLIKDKKLQDQMKKTLEAY+DCIKNAKTEEERIKCLDLIKDEN
Sbjct  569   RAFYECISNGGNYEECLKLIKDKKLQDQMKKTLEAYNDCIKNAKTEEERIKCLDLIKDEN  628

Query  369   LKKSLLNQQKVQVALDCLKNAKTDEERNECLKLINDPEIREKFRKELGLQKELQEYKDCI  428
             LKKSLLNQQKVQVALDCLKNAKTDEER+ECLKLINDPEIREKFRKEL LQKELQEYKDCI
Sbjct  629   LKKSLLNQQKVQVALDCLKNAKTDEERKECLKLINDPEIREKFRKELELQKELQEYKDCI  688

Query  429   KNAKTEADKNECLKGLSKEAIERLKQQALDCLKNAKTDEERNECLKNIPQDLQKELLADM  488
             KNAKTEA+KNECLKGLSKEAIERLKQQALDCLKNAKTDEERNECLKNIPQDLQKELLADM
Sbjct  689   KNAKTEAEKNECLKGLSKEAIERLKQQALDCLKNAKTDEERNECLKNIPQDLQKELLADM  748

Query  489   SVKAYKDCVSKARNekekkecekLLTPEAKKKLEQQVLDCLKNAKTDEERKKCLKDLPKD  548
             SVKAYKDCVSKARNEKEK+ECEKLLTPEA+KKLEQQVLDCLKNAKTDEERKKCLKDLPKD
Sbjct  749   SVKAYKDCVSKARNEKEKQECEKLLTPEARKKLEQQVLDCLKNAKTDEERKKCLKDLPKD  808

Query  549   LQSDILAKESLKAYKDCVSQAKTEAEKQECeklltpeakklleeeakeSVKAYLDCVSQa  608
             LQSDILAKES+KAYKDCVSQAK EAEK+ECEKLLTPEAKKLLEEEAKESVKAYLDCVSQA
Sbjct  809   LQSDILAKESVKAYKDCVSQAKNEAEKKECEKLLTPEAKKLLEEEAKESVKAYLDCVSQA  868

Query  609   kteaekkeceklltpeakkkleeakksvkaYLDCVSQakteaekkeceklltPEAKKLLE  668
             KTEAEKKECEKLLTPEA+KKLEEAKKSVKAYLDCVSQAK E EKKECEKLLTPEA+KLLE
Sbjct  869   KTEAEKKECEKLLTPEARKKLEEAKKSVKAYLDCVSQAKNEDEKKECEKLLTPEARKLLE  928

Query  669   QQALDCLKNAKTEAEKKRCVKDLPKDLQKKVLAKESLKAYKDCVSRARNEKEKQECekll  728
             QQALDCLKNAKT+ E+K+C+KDLPKDLQKKVLAKES+KAY DCVS+A+ E EK+ECEKLL
Sbjct  929   QQALDCLKNAKTDEERKKCLKDLPKDLQKKVLAKESVKAYLDCVSQAKTEAEKKECEKLL  988

Query  729   tpeakklleeakkslkaykDCVSRARNEKEKQECeklltpeakklleeeakeSVKAYLDC  788
             TPEA+KLLEEAK S+KAYKDCVS+ARNEKEK+ECEKLLTPEAKKLLEEEAKESVKAYLDC
Sbjct  989   TPEARKLLEEAKESIKAYKDCVSKARNEKEKKECEKLLTPEAKKLLEEEAKESVKAYLDC  1048

Query  789   VSQakteaekkeceklltpeakkkleeakksvkaYLDCVSQakteaekkeceklltPEAK  848
             VSQAKTEAEKKECEKLLTPEAKKKLEEAKKSVKAYLDCVSQAK E EKKECEKLLTPEAK
Sbjct  1049  VSQAKTEAEKKECEKLLTPEAKKKLEEAKKSVKAYLDCVSQAKNEDEKKECEKLLTPEAK  1108

Query  849   KLLEQQALDCLKNAKTEAEKKRCVKDLPKDLQKKVLAKESLKAYKDCVSRARNEKEKQEC  908
             KLLEQQALDCLKNAKTEA+KKRCVKDLPKDLQKKVLAKES+KAYKDCVSRARNEKEK+EC
Sbjct  1109  KLLEQQALDCLKNAKTEADKKRCVKDLPKDLQKKVLAKESVKAYKDCVSRARNEKEKKEC  1168

Query  909   eklltpeakklleeakkslkaykDCVSRARNEKEKQECeklltpeakklleeakkslkay  968
             EKLLTPEAKKLLEEAKKS+KAY DCVS+A+ E EK+ECEKLLTPEAKKLLEEAK SLKAY
Sbjct  1169  EKLLTPEAKKLLEEAKKSVKAYLDCVSQAKTEAEKKECEKLLTPEAKKLLEEAKESLKAY  1228

Query  969   kDCVSRARNEKEKQECEKLLTPEAKKLLEQQALDCLKNAKTEAEKKRCVKDLPKDLQKKV  1028
             KDCVSRARNEKEK+ECEKLLTPEAKKLLEQQALDCLKNAKTEA+KKRCVKDLPKDLQKKV
Sbjct  1229  KDCVSRARNEKEKKECEKLLTPEAKKLLEQQALDCLKNAKTEADKKRCVKDLPKDLQKKV  1288

Query  1029  LAKESVKAYLDCVSRARNEKEKQECeklltpeakklleeakeslkaYKDCLSQARNEEER  1088
             LAKESVKAYLDCVSRARNEKEK+ECEKLLTPEAKKLLEEAKESLKAYKDCLSQARNEEER
Sbjct  1289  LAKESVKAYLDCVSRARNEKEKKECEKLLTPEAKKLLEEAKESLKAYKDCLSQARNEEER  1348

Query  1089  RACEKLLTPEAKKLLEQEVKKSVKAYLDCVSKARNEREKQECEKLLTPEARKFLAKQVLS  1148
             RACEKLLTPEA+KLLEQEVKKSVKAYLDCVS+A+ E EK+ECEKLLTPEARKFLAKQVL+
Sbjct  1349  RACEKLLTPEARKLLEQEVKKSVKAYLDCVSQAKTEAEKKECEKLLTPEARKFLAKQVLN  1408

Query  1149  CLEKARNEEERKACLKNIPKDLQKNVLAKESLKAYKDCLSQARNEEERRACEKLLTPEAR  1208
             CLEKA NEEERKACLKN+PKDLQ NVLAKESLKAYKDCLSQARNEEERRACEKLLTPEAR
Sbjct  1409  CLEKAGNEEERKACLKNLPKDLQENVLAKESLKAYKDCLSQARNEEERRACEKLLTPEAR  1468

Query  1209  KLLEQEVKKSVKAYLDCVSRARNEKEKQECEKLLTPEARKFLAKELQQKDKAIKDCLKNA  1268
             KLLEQEVKKSVKAYLDCVSRARNEKEK+ECEKLLTPEARKFLAKELQQKDKAIKDCLKNA
Sbjct  1469  KLLEQEVKKSVKAYLDCVSRARNEKEKKECEKLLTPEARKFLAKELQQKDKAIKDCLKNA  1528

Query  1269  DPNDRAAIMKCLDGLSDEEKLKYLQEAREKAVLDCLKTARTDEEKRKCQNLYSDLIQEIQ  1328
             DPNDRAAIMKCLDGLSDEEKLKYLQEAREKAVLDCLKTARTDEEKRKCQNLYSDLIQEIQ
Sbjct  1529  DPNDRAAIMKCLDGLSDEEKLKYLQEAREKAVLDCLKTARTDEEKRKCQNLYSDLIQEIQ  1588

Query  1329  NKRAQSKQNQLSKTERLHQASECLDNLDDPTDQEAIEQCLEGLSDSERALILGIKRQADE  1388
             NKR+QSKQNQLSKTERLHQASECLDNLDDPTDQ+AIEQCLEGLSDSERALILGIKRQADE
Sbjct  1589  NKRTQSKQNQLSKTERLHQASECLDNLDDPTDQQAIEQCLEGLSDSERALILGIKRQADE  1648

Query  1389  VDLIYSDLRNRKTFDNMAAKGYPLLPMDFKNGGDIATINATNVDADKIASDNPIYASIEP  1448
             VD IYSDLRNRKTFDNMAAKGYPLLPMDFKNGGDIATINATNVDADKIASDNPIYASIEP
Sbjct  1649  VDRIYSDLRNRKTFDNMAAKGYPLLPMDFKNGGDIATINATNVDADKIASDNPIYASIEP  1708

Query  1449  DITKQYETEKTIkdknleaklakalggnkkdddkekskkstaeakvesNKIDKDVAETAK  1508
             DITKQYETEKTIKDKNLEAKLAKALGGNKKDDDKEKSKKSTAEAKVESNKIDKDVAETAK
Sbjct  1709  DITKQYETEKTIKDKNLEAKLAKALGGNKKDDDKEKSKKSTAEAKVESNKIDKDVAETAK  1768

Query  1509  NISEIALKNKKEKNGEFVDENGNPIDDKKKTETQDETSPVKQAFIGKSDPTFVLAQYTPI  1568
             NISEIALKNKKEKNGEFVDENGNPIDDKKK+E QDETSPVKQAFIGKSDPTFVLAQYTPI
Sbjct  1769  NISEIALKNKKEKNGEFVDENGNPIDDKKKAEKQDETSPVKQAFIGKSDPTFVLAQYTPI  1828

Query  1569  EITLTSKVDATLTGIVSGVVAKDVWNMNGTMILLDKGTKVYGNYQSVKGGTPIMTRLMIV  1628
             EITLTSKVDATLTGIVSGVVAKDVWNMNGTMILLDKGTKVYGNYQSVKGGTPIMTRLMIV
Sbjct  1829  EITLTSKVDATLTGIVSGVVAKDVWNMNGTMILLDKGTKVYGNYQSVKGGTPIMTRLMIV  1888

Query  1629  FTKAITPDGVIIPLANAQAAGMLGEAGVDGYVNNHFMKRIGFAVIASVVNSFLQTAPIIA  1688
             FTKAITPDGVIIPLANAQAAGMLGEAGVDGYVNNHFMKRIGFAVIASVVNSFLQTAPIIA
Sbjct  1889  FTKAITPDGVIIPLANAQAAGMLGEAGVDGYVNNHFMKRIGFAVIASVVNSFLQTAPIIA  1948

Query  1689  LDKLIGLGKGRSERTPEFNYALGQAINGSMQSSAQMSNQILGQLMNIPPSFYKNEGDSIK  1748
             LDKLIGLGKGRSERTPEFNYALGQAINGSMQSSAQMSNQILGQLMNIPPSFYKNEGDSIK
Sbjct  1949  LDKLIGLGKGRSERTPEFNYALGQAINGSMQSSAQMSNQILGQLMNIPPSFYKNEGDSIK  2008

Query  1749  ILTMDDIDFSGVYDVKITNKSVVDEIIKQSTKTLSREHEEITTSPKGGN  1797
             ILTMDDIDFSGVYDVKITNKSVVDEIIKQSTKTLSREHEEITTSPKGGN
Sbjct  2009  ILTMDDIDFSGVYDVKITNKSVVDEIIKQSTKTLSREHEEITTSPKGGN  2057


 Score =  158 bits (585),  Expect = 2e-39, Method: Compositional matrix adjust.
 Identities = 175/199 (88%), Positives = 181/199 (91%), Gaps = 0/199 (0%)

Query  1    MNEENDKLETSKKTQQHSPQDLSNEEATEANHFedsskeskessdHHLDNPTETKTNFDE  60
            MNEENDKLETSKKTQQHSPQDLSNEEATE NHFEDSSKESKESSDHHL+NPTETKTNFD 
Sbjct  1    MNEENDKLETSKKTQQHSPQDLSNEEATEINHFEDSSKESKESSDHHLNNPTETKTNFDG  60

Query  61   YELEETQTQMDsggnetsessngsLADKLFKKARKLVDNKKPFTQQKNLdeeiqepneed  120
               EETQTQMDSGG+ETSESSNGSLADKLFKKARKLVDNK+PFTQQKNLDEE QE NEED
Sbjct  61   DKSEETQTQMDSGGDETSESSNGSLADKLFKKARKLVDNKRPFTQQKNLDEETQELNEED  120

Query  121  dqennGYQEETQMDLIDDETSKKTQQHSPQDLSNEEATEANHFedsskeskessdHHLDN  180
            DQENNGYQEETQ +LIDDETSKKTQQHSPQDLSNEEATE NHFEDSSKESKESSD  LDN
Sbjct  121  DQENNGYQEETQTGLIDDETSKKTQQHSPQDLSNEEATEINHFEDSSKESKESSDPYLDN  180

Query  181  YTEAKTNFDEYESEEITND  199
             TE+KTNFD   SEE   +
Sbjct  181  PTETKTNFDGDKSEETQTQ  199


 Score =  143 bits (526),  Expect = 7e-35, Method: Compositional matrix adjust.
 Identities = 166/191 (87%), Positives = 171/191 (90%), Gaps = 0/191 (0%)

Query  9    ETSKKTQQHSPQDLSNEEATEANHFedsskeskessdHHLDNPTETKTNFDEYELEETQT  68
            ETSKKTQQHSPQDLSNEEATE NHFEDSSKESKESSD  LDNPTETKTNFD    EETQT
Sbjct  139  ETSKKTQQHSPQDLSNEEATEINHFEDSSKESKESSDPYLDNPTETKTNFDGDKSEETQT  198

Query  69   QMDsggnetsessngsLADKLFKKARKLVDNKKPFTQQKNLdeeiqepneeddqennGYQ  128
            QMDSGG+ETSESSNGSLADKLFKKARKLVDNK+PFTQQKNLDEE QE NEEDDQENNGYQ
Sbjct  199  QMDSGGDETSESSNGSLADKLFKKARKLVDNKRPFTQQKNLDEETQELNEEDDQENNGYQ  258

Query  129  EETQMDLIDDETSKKTQQHSPQDLSNEEATEANHFedsskeskessdHHLDNYTEAKTNF  188
            EETQ +LIDDETSKKTQQHSPQDLSNEEATE NHFEDSSKESKESSD  LDN TE+KTNF
Sbjct  259  EETQTGLIDDETSKKTQQHSPQDLSNEEATEINHFEDSSKESKESSDPYLDNPTETKTNF  318

Query  189  DEYESEEITND  199
            D   SEE   +
Sbjct  319  DGDKSEETQTQ  329

20) cagY in NC_017368


> JQ685140|1|G1|442739065|AGC69792.1|Helicobacter_pylori_J166_isolate_MJ166sc3|+|1..6174|cagY|-|cag 
pathogenicity island protein 
Y
Length=2057

 Score = 1882 bits (7150),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 1580/1805 (88%), Positives = 1661/1805 (93%), Gaps = 33/1805 (1%)

Query  9     ETSKKTQQHSPQDLSNEEATEANHFEDsskeskesseHHLDNPTETKTNFDEYESEETQT  68
             ETSKKTQQHSPQDLSNEEATE NHFEDSSKESKESS+  LDNPTETKTNFD   SEETQT
Sbjct  269   ETSKKTQQHSPQDLSNEEATEINHFEDSSKESKESSDPYLDNPTETKTNFDGDKSEETQT  328

Query  69    QMDsggnetsessngsLADKLFKKARKLVDNKRPFTQQKNLdeeiqepneeddqennGYQ  128
             QMDSGG+ETSESSNGSLADKLFKKARKLVDNKRPFTQQKNLDEE QE NEEDDQENNGYQ
Sbjct  329   QMDSGGDETSESSNGSLADKLFKKARKLVDNKRPFTQQKNLDEETQELNEEDDQENNGYQ  388

Query  129   EETQMDLIDDETSKKTQQHSPQDLSNEEATEANHFEDsskeskesseHHLDNPTETKTNF  188
             EETQ +LIDDETSKKTQQHSPQDLSNEEATE NHFEDSSKESKESS+  LDNPTETKTNF
Sbjct  389   EETQTGLIDDETSKKTQQHSPQDLSNEEATEINHFEDSSKESKESSDPYLDNPTETKTNF  448

Query  189   DEYESEEITNDSNDQEiikgskkkyiiggivvavliviilFSRSIFHYFIPLEDKSSRFS  248
             DE  SEEITNDSNDQEIIKGSKKKYIIGGIVVAVLIVIILFSRSIFHYF+PLEDKSSRFS
Sbjct  449   DEDKSEEITNDSNDQEIIKGSKKKYIIGGIVVAVLIVIILFSRSIFHYFMPLEDKSSRFS  508

Query  249   KDRNLYVNDEIQIRQEYNRLLKERNEKGNMIDKNLFFNDDPNRTLYNYLNIAEIEDKNPL  308
             KDRNLYVNDEIQIRQEYNRLLKERNEKGNMIDKNLFFNDDPNRTLYNYLNIAEIEDKNPL
Sbjct  509   KDRNLYVNDEIQIRQEYNRLLKERNEKGNMIDKNLFFNDDPNRTLYNYLNIAEIEDKNPL  568

Query  309   RAFYECISNGGNYEEClklikdkklqdqmkktlEAYNDCIKNAKTEEERIKCLDLIKDEN  368
             RAFYECISNGGNYEECLKLIKDKKLQDQMKKTLEAYNDCIKNAKTEEERIKCLDLIKDEN
Sbjct  569   RAFYECISNGGNYEECLKLIKDKKLQDQMKKTLEAYNDCIKNAKTEEERIKCLDLIKDEN  628

Query  369   LKKSLLNQQKVQVALDCLKNAKTDEERNECLKLINDPEIREKFRKELGLQKELQEYKDCI  428
             LKKSLLNQQKVQVALDCLKNAKTDEER+ECLKLINDPEIREKFRKEL LQKELQEYKDCI
Sbjct  629   LKKSLLNQQKVQVALDCLKNAKTDEERKECLKLINDPEIREKFRKELELQKELQEYKDCI  688

Query  429   KNAKTEAEKNECLKGLSKEAIERLKQQALDCLKNAKTDEERNECLKNIPQDLQKELLADM  488
             KNAKTEAEKNECLKGLSKEAIERLKQQALDCLKNAKTDEERNECLKNIPQDLQKELLADM
Sbjct  689   KNAKTEAEKNECLKGLSKEAIERLKQQALDCLKNAKTDEERNECLKNIPQDLQKELLADM  748

Query  489   SVKAYKDCVSKARNekekkeceklltpeakklleeakeslkaYKDCVSRARNEKEKQECe  548
             SVKAYKDCVSKARNEKEK+ECEKLLTPEA+K LE+         DC+  A+ + E++ C 
Sbjct  749   SVKAYKDCVSKARNEKEKQECEKLLTPEARKKLEQQVL------DCLKNAKTDEERKKCL  802

Query  549   klltpeakklleeakkslkaykDCVSRARNEKEKQECEKLLTPEAKKLLEQQA-------  601
             K L  + +  +           DCVS+A+NE EK+ECEKLLTPEAKKLLE++A       
Sbjct  803   KDLPKDLQSDILAKESVKAYK-DCVSQAKNEAEKKECEKLLTPEAKKLLEEEAKESVKAY  861

Query  602   LDCLKNAKTDEERNECLKNIPQDLQKELL-ADMSVKAYKDCVSKARNekekkeceklltp  660
             LDC+ +AKT+ E++EC K +  + +K L  A  SVKAY DCVS+A+NE EKKECEKLLTP
Sbjct  862   LDCVSQAKTEAEKKECEKLLTPEARKKLEEAKKSVKAYLDCVSQAKNEDEKKECEKLLTP  921

Query  661   eakklleeakeslkaYKDCVSRARNEKEKQECeklltpeakklleeakkslkaykDCVSR  720
             EA+KLLE+         DC+  A+ + E++ C K L  + +K +           DCVS+
Sbjct  922   EARKLLEQQAL------DCLKNAKTDEERKKCLKDLPKDLQKKVLAKESVKAYL-DCVSQ  974

Query  721   ARNEKEKQECEKLLTPEAKKLLEQ--QAL----DCLKNAKTEAEKKRCVKDLPKDLQKKV  774
             A+ E EK+ECEKLLTPEA+KLLE+  +++    DC+ +A+ E EKK C K L  +  KK+
Sbjct  975   AKTEAEKKECEKLLTPEARKLLEEAKESIKAYKDCVSKARNEKEKKECEKLLTPE-AKKL  1033

Query  775   L---AKESVKAYLDCVSRARNekekkeceklltpeakklleeakeslkaYKDCVSRARNE  831
             L   AKESVKAYLDCVS+A+ E EKKECEKLLTPEAKK LEEAK S+KAY DCVS+A+NE
Sbjct  1034  LEEEAKESVKAYLDCVSQAKTEAEKKECEKLLTPEAKKKLEEAKKSVKAYLDCVSQAKNE  1093

Query  832   KEKQECEKLLTPEAKKLLEQQALDCLKNAKTEAEKKRCVKDLPKDLQKKVLAKESVKAYL  891
              EK+ECEKLLTPEAKKLLEQQALDCLKNAKTEA+KKRCVKDLPKDLQKKVLAKESVKAY 
Sbjct  1094  DEKKECEKLLTPEAKKLLEQQALDCLKNAKTEADKKRCVKDLPKDLQKKVLAKESVKAYK  1153

Query  892   DCVSRARNEKEKQECeklltpeakklleeakeslkaYKDCLSQARNEEERRACEKLLTPE  951
             DCVSRARNEKEK+ECEKLLTPEAKKLLEEAK S+KAY DC+SQA+ E E++ CEKLLTPE
Sbjct  1154  DCVSRARNEKEKKECEKLLTPEAKKLLEEAKKSVKAYLDCVSQAKTEAEKKECEKLLTPE  1213

Query  952   AKKLLEQEVKKSVKAYLDCVSRARNEKEKQECEKLLTPEAKKLLEQQALDCLKNAKTEAE  1011
             AKKLLE E K S+KAY DCVSRARNEKEK+ECEKLLTPEAKKLLEQQALDCLKNAKTEA+
Sbjct  1214  AKKLLE-EAKESLKAYKDCVSRARNEKEKKECEKLLTPEAKKLLEQQALDCLKNAKTEAD  1272

Query  1012  KKRCVKDLPKDLQKKVLAKESVKAYLDCVSRARNekekkeceklltpeakklleeakesl  1071
             KKRCVKDLPKDLQKKVLAKESVKAYLDCVSRARNEKEKKECEKLLTPEAKKLLEEAKESL
Sbjct  1273  KKRCVKDLPKDLQKKVLAKESVKAYLDCVSRARNEKEKKECEKLLTPEAKKLLEEAKESL  1332

Query  1072  kaYKDCLSQARNEEERRACEKLLTPEAKKLLEQEVKKSVKAYLDCVSRARNEKEKQECEK  1131
             KAYKDCLSQARNEEERRACEKLLTPEA+KLLEQEVKKSVKAYLDCVS+A+ E EK+ECEK
Sbjct  1333  KAYKDCLSQARNEEERRACEKLLTPEARKLLEQEVKKSVKAYLDCVSQAKTEAEKKECEK  1392

Query  1132  LLTPEARKFLAKQVLNCLEKARNEEERKACLKNIPKDLQKNVLAKESLKAYKDCLSQARN  1191
             LLTPEARKFLAKQVLNCLEKA NEEERKACLKN+PKDLQ NVLAKESLKAYKDCLSQARN
Sbjct  1393  LLTPEARKFLAKQVLNCLEKAGNEEERKACLKNLPKDLQENVLAKESLKAYKDCLSQARN  1452

Query  1192  EEERRACEKLLTPEARKLLEQEVKKSVKAYLDCVSRARNEKEKQECEKLLTPEARKFLAK  1251
             EEERRACEKLLTPEARKLLEQEVKKSVKAYLDCVSRARNEKEK+ECEKLLTPEARKFLAK
Sbjct  1453  EEERRACEKLLTPEARKLLEQEVKKSVKAYLDCVSRARNEKEKKECEKLLTPEARKFLAK  1512

Query  1252  ELQQKDKAIKDCLKNADPNDRAAIMKCLDGLSDEEKLKYLQEAREKAVLDCLKTARTDEE  1311
             ELQQKDKAIKDCLKNADPNDRAAIMKCLDGLSDEEKLKYLQEAREKAVLDCLKTARTDEE
Sbjct  1513  ELQQKDKAIKDCLKNADPNDRAAIMKCLDGLSDEEKLKYLQEAREKAVLDCLKTARTDEE  1572

Query  1312  KRKCQNLYSDLIQEIQNKRTQSKQNQLSKTERLHQASECLDNLDDPTDQEAIEQCLEGLS  1371
             KRKCQNLYSDLIQEIQNKRTQSKQNQLSKTERLHQASECLDNLDDPTDQ+AIEQCLEGLS
Sbjct  1573  KRKCQNLYSDLIQEIQNKRTQSKQNQLSKTERLHQASECLDNLDDPTDQQAIEQCLEGLS  1632

Query  1372  DSERALILGIKRQADEVDLIYSDLRNRKTFDNMAAKGYPLLPMDFKNGGDIATINATNVD  1431
             DSERALILGIKRQADEVD IYSDLRNRKTFDNMAAKGYPLLPMDFKNGGDIATINATNVD
Sbjct  1633  DSERALILGIKRQADEVDRIYSDLRNRKTFDNMAAKGYPLLPMDFKNGGDIATINATNVD  1692

Query  1432  ADKIASDNPIYASIEPDITKQYETEKTIkdknleaklakalggnkkdddkekskksTAEA  1491
             ADKIASDNPIYASIEPDITKQYETEKTIKDKNLEAKLAKALGGNKKDDDKEKSKKSTAEA
Sbjct  1693  ADKIASDNPIYASIEPDITKQYETEKTIKDKNLEAKLAKALGGNKKDDDKEKSKKSTAEA  1752

Query  1492  RVESNKIDKDVAETAKNISEIALKNKKEKSGEFVDENGNPIDDKKKTETQDETSPVKQAF  1551
             +VESNKIDKDVAETAKNISEIALKNKKEK+GEFVDENGNPIDDKKK+E QDETSPVKQAF
Sbjct  1753  KVESNKIDKDVAETAKNISEIALKNKKEKNGEFVDENGNPIDDKKKAEKQDETSPVKQAF  1812

Query  1552  IGKSDPTFVLAQYTPIEITLTSKVDATLTGIVSGVVAKDVWNMNGTMILLDKGTKVYGNY  1611
             IGKSDPTFVLAQYTPIEITLTSKVDATLTGIVSGVVAKDVWNMNGTMILLDKGTKVYGNY
Sbjct  1813  IGKSDPTFVLAQYTPIEITLTSKVDATLTGIVSGVVAKDVWNMNGTMILLDKGTKVYGNY  1872

Query  1612  QSVKGGTPIMTRLMIVFTKAITPDGVIIPLANAQAAGMLGEAGVDGYVNNHFMKRIGFAV  1671
             QSVKGGTPIMTRLMIVFTKAITPDGVIIPLANAQAAGMLGEAGVDGYVNNHFMKRIGFAV
Sbjct  1873  QSVKGGTPIMTRLMIVFTKAITPDGVIIPLANAQAAGMLGEAGVDGYVNNHFMKRIGFAV  1932

Query  1672  IASVVNSFLQTAPIIALDKLIGLGKGRSERTPEFNYALGQAINGSMQSSAQMSNQILGQL  1731
             IASVVNSFLQTAPIIALDKLIGLGKGRSERTPEFNYALGQAINGSMQSSAQMSNQILGQL
Sbjct  1933  IASVVNSFLQTAPIIALDKLIGLGKGRSERTPEFNYALGQAINGSMQSSAQMSNQILGQL  1992

Query  1732  MNIPPSFYKNEGDSIKILTMDDIDFSGVYDVKITNKSVVDEIIKQSTKTLSREHEEITTS  1791
             MNIPPSFYKNEGDSIKILTMDDIDFSGVYDVKITNKSVVDEIIKQSTKTLSREHEEITTS
Sbjct  1993  MNIPPSFYKNEGDSIKILTMDDIDFSGVYDVKITNKSVVDEIIKQSTKTLSREHEEITTS  2052

Query  1792  PKGGN  1796
             PKGGN
Sbjct  2053  PKGGN  2057


 Score =  165 bits (610),  Expect = 2e-41, Method: Compositional matrix adjust.
 Identities = 176/199 (89%), Positives = 183/199 (92%), Gaps = 0/199 (0%)

Query  1    MNEENDKFETSKKTQQHSPQDLSNEEATEANHFEDsskeskesseHHLDNPTETKTNFDE  60
            MNEENDK+ETSKKTQQHSPQDLSNEEATE NHFEDSSKESKESS+HHL+NPTETKTNFD 
Sbjct  1    MNEENDKLETSKKTQQHSPQDLSNEEATEINHFEDSSKESKESSDHHLNNPTETKTNFDG  60

Query  61   YESEETQTQMDsggnetsessngsLADKLFKKARKLVDNKRPFTQQKNLdeeiqepneed  120
              SEETQTQMDSGG+ETSESSNGSLADKLFKKARKLVDNKRPFTQQKNLDEE QE NEED
Sbjct  61   DKSEETQTQMDSGGDETSESSNGSLADKLFKKARKLVDNKRPFTQQKNLDEETQELNEED  120

Query  121  dqennGYQEETQMDLIDDETSKKTQQHSPQDLSNEEATEANHFEDsskeskesseHHLDN  180
            DQENNGYQEETQ +LIDDETSKKTQQHSPQDLSNEEATE NHFEDSSKESKESS+  LDN
Sbjct  121  DQENNGYQEETQTGLIDDETSKKTQQHSPQDLSNEEATEINHFEDSSKESKESSDPYLDN  180

Query  181  PTETKTNFDEYESEEITND  199
            PTETKTNFD   SEE   +
Sbjct  181  PTETKTNFDGDKSEETQTQ  199


 Score =  151 bits (557),  Expect = 3e-37, Method: Compositional matrix adjust.
 Identities = 168/191 (88%), Positives = 173/191 (91%), Gaps = 0/191 (0%)

Query  9    ETSKKTQQHSPQDLSNEEATEANHFEDsskeskesseHHLDNPTETKTNFDEYESEETQT  68
            ETSKKTQQHSPQDLSNEEATE NHFEDSSKESKESS+  LDNPTETKTNFD   SEETQT
Sbjct  139  ETSKKTQQHSPQDLSNEEATEINHFEDSSKESKESSDPYLDNPTETKTNFDGDKSEETQT  198

Query  69   QMDsggnetsessngsLADKLFKKARKLVDNKRPFTQQKNLdeeiqepneeddqennGYQ  128
            QMDSGG+ETSESSNGSLADKLFKKARKLVDNKRPFTQQKNLDEE QE NEEDDQENNGYQ
Sbjct  199  QMDSGGDETSESSNGSLADKLFKKARKLVDNKRPFTQQKNLDEETQELNEEDDQENNGYQ  258

Query  129  EETQMDLIDDETSKKTQQHSPQDLSNEEATEANHFEDsskeskesseHHLDNPTETKTNF  188
            EETQ +LIDDETSKKTQQHSPQDLSNEEATE NHFEDSSKESKESS+  LDNPTETKTNF
Sbjct  259  EETQTGLIDDETSKKTQQHSPQDLSNEEATEINHFEDSSKESKESSDPYLDNPTETKTNF  318

Query  189  DEYESEEITND  199
            D   SEE   +
Sbjct  319  DGDKSEETQTQ  329

21) HPPC18_02525 in NC_017742


> JQ685140|1|G1|442739065|AGC69792.1|Helicobacter_pylori_J166_isolate_MJ166sc3|+|1..6174|cagY|-|cag 
pathogenicity island protein 
Y
Length=2057

 Score = 1874 bits (7120),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 1667/1790 (94%), Positives = 1713/1790 (96%), Gaps = 33/1790 (1%)

Query  9     ETSKKTQQHSPQDLSNEETIKANHFedsskeskessdHHLDNPTETKTNFDGEKSEETQT  68
             ETSKKTQQHSPQDLSNEE+   NHFEDSSKESKESSD  LDNPTETKTNFDG+KSEETQT
Sbjct  269   ETSKKTQQHSPQDLSNEEATEINHFEDSSKESKESSDPYLDNPTETKTNFDGDKSEETQT  328

Query  69    QMDSGGNETSESSN--LADKLFKKARKLVDNKRPFTQQKNLdeeiqepneeddqennGYQ  126
             QMDSGG+ETSESSN  LADKLFKKARKLVDNKRPFTQQKNLDEE QE NEEDDQENNGYQ
Sbjct  329   QMDSGGDETSESSNGSLADKLFKKARKLVDNKRPFTQQKNLDEETQELNEEDDQENNGYQ  388

Query  127   EETQMDLIDDETSKKTQQHSPQDLSNEETIKANHFedsskeskessdHHLDNSTETKTNF  186
             EETQ +LIDDETSKKTQQHSPQDLSNEE+   NHFEDSSKESKESSD  LDN+TETKTNF
Sbjct  389   EETQTGLIDDETSKKTQQHSPQDLSNEEATEINHFEDSSKESKESSDPYLDNPTETKTNF  448

Query  187   DGEKSEEITDDSNDQEiikgskkkyiiggivvavliviilFSRSIFHYFVPLEDKSSRFS  246
             D +KSEEIT+DSNDQEIIKGSKKKYIIGGIVVAVLIVIILFSRSIFHYF+PLEDKSSRFS
Sbjct  449   DEDKSEEITNDSNDQEIIKGSKKKYIIGGIVVAVLIVIILFSRSIFHYFMPLEDKSSRFS  508

Query  247   KDRNLYVNDEIQIRQEYNRLLKERNEKGNMIDKNLFFNDDPNRTLYNYLNIAEIEDKNPL  306
             KDRNLYVNDEIQIRQEYNRLLKERNEKGNMIDKNLFFNDDPNRTLYNYLNIAEIEDKNPL
Sbjct  509   KDRNLYVNDEIQIRQEYNRLLKERNEKGNMIDKNLFFNDDPNRTLYNYLNIAEIEDKNPL  568

Query  307   KAFYECISNGGNYEEClklikdkklqdqmkktlEAYNDCIKNAKTEEERIKCLDLIKDEN  366
             +AFYECISNGGNYEECLKLIKDKKLQDQMKKTLEAYNDCIKNAKTEEERIKCLDLIKDEN
Sbjct  569   RAFYECISNGGNYEECLKLIKDKKLQDQMKKTLEAYNDCIKNAKTEEERIKCLDLIKDEN  628

Query  367   LKKSLLNQQKVQVALDCLKNAKTDEERNECLKLINDPEIrekfrkelelqkelqeYKDCI  426
             LKKSLLNQQKVQVALDCLKNAKTDEER+ECLKLINDPEIREKFRKELELQKELQEYKDCI
Sbjct  629   LKKSLLNQQKVQVALDCLKNAKTDEERKECLKLINDPEIREKFRKELELQKELQEYKDCI  688

Query  427   KNAKTEAERNKCLKGLSKEAIERLKQQALDCLKNAKTDEERNECLKNIPQDLQKELLADM  486
             KNAKTEAE+N CLKGLSKEAIERLKQQALDCLKNAKTDEERNECLKNIPQDLQKELLADM
Sbjct  689   KNAKTEAEKNECLKGLSKEAIERLKQQALDCLKNAKTDEERNECLKNIPQDLQKELLADM  748

Query  487   SVKAYKDCVSKARNekekkecekLLTPEARKKLEQQVLDCLKNAKTDEERKKCLKDLPKD  546
             SVKAYKDCVSKARNEKEK+ECEKLLTPEARKKLEQQVLDCLKNAKTDEERKKCLKDLPKD
Sbjct  749   SVKAYKDCVSKARNEKEKQECEKLLTPEARKKLEQQVLDCLKNAKTDEERKKCLKDLPKD  808

Query  547   LQSDILAKESVKAYKDCVSQakteaekkeceklltpeakklleeeakeSVKAYLDCVSQa  606
             LQSDILAKESVKAYKDCVSQAK EAEKKECEKLLTPEAKKLLEEEAKESVKAYLDCVSQA
Sbjct  809   LQSDILAKESVKAYKDCVSQAKNEAEKKECEKLLTPEAKKLLEEEAKESVKAYLDCVSQA  868

Query  607   kteaekkeceklltpeakkkleeakesvkaYLDCVSQakteaekkeceklltPEAKKLLE  666
             KTEAEKKECEKLLTPEA+KKLEEAK SVKAYLDCVSQAK E EKKECEKLLTPEA+KLLE
Sbjct  869   KTEAEKKECEKLLTPEARKKLEEAKKSVKAYLDCVSQAKNEDEKKECEKLLTPEARKLLE  928

Query  667   QQALDCLKNAKTEAERKRCVKDLPKDLQKKVLAKESVKAYLDCVSQakteaekkecekll  726
             QQALDCLKNAKT+ ERK+C+KDLPKDLQKKVLAKESVKAYLDCVSQAKTEAEKKECEKLL
Sbjct  929   QQALDCLKNAKTDEERKKCLKDLPKDLQKKVLAKESVKAYLDCVSQAKTEAEKKECEKLL  988

Query  727   tpeakklleeakeslkaYKDCVSRARNekekkecekLLTPEAKKLLEQEVKRSVKAYLDC  786
             TPEA+KLLEEAKES+KAYKDCVS+ARNEKEKKECEKLLTPEAKKLLE+E K SVKAYLDC
Sbjct  989   TPEARKLLEEAKESIKAYKDCVSKARNEKEKKECEKLLTPEAKKLLEEEAKESVKAYLDC  1048

Query  787   VSQakteaekkeceklltpeakklleeakeslkaYKDCVSRARNEKEKQECEKLLTPEAK  846
             VSQAKTEAEKKECEKLLTPEAKK LEEAK S+KAY DCVS+A+NE EK+ECEKLLTPEAK
Sbjct  1049  VSQAKTEAEKKECEKLLTPEAKKKLEEAKKSVKAYLDCVSQAKNEDEKKECEKLLTPEAK  1108

Query  847   KLLEQEV------------------------------KKSVKAYLDCVSQakteaekkac  876
             KLLEQ+                               K SVKAY DCVS+A+ E EKK C
Sbjct  1109  KLLEQQALDCLKNAKTEADKKRCVKDLPKDLQKKVLAKESVKAYKDCVSRARNEKEKKEC  1168

Query  877   ekLLTPEAKKLLEQEVKKSVKAYLDCVSQakteaekkaceklltpeakkkleeakksvka  936
             EKLLTPEAKKLLE E KKSVKAYLDCVSQAKTEAEKK CEKLLTPEAKK LEEAK S+KA
Sbjct  1169  EKLLTPEAKKLLE-EAKKSVKAYLDCVSQAKTEAEKKECEKLLTPEAKKLLEEAKESLKA  1227

Query  937   YLDCVSRARNekekkecekLLTPEAKKLLEQQALDCLKSAKTEAEKKRCVKDLPKDLQKK  996
             Y DCVSRARNEKEKKECEKLLTPEAKKLLEQQALDCLK+AKTEA+KKRCVKDLPKDLQKK
Sbjct  1228  YKDCVSRARNEKEKKECEKLLTPEAKKLLEQQALDCLKNAKTEADKKRCVKDLPKDLQKK  1287

Query  997   VLAKESVKAYLDCVSRARNekekkeceklltpeakklleeakeslkaYKDCLSQARNEEE  1056
             VLAKESVKAYLDCVSRARNEKEKKECEKLLTPEAKKLLEEAKESLKAYKDCLSQARNEEE
Sbjct  1288  VLAKESVKAYLDCVSRARNEKEKKECEKLLTPEAKKLLEEAKESLKAYKDCLSQARNEEE  1347

Query  1057  RKACEKLLTPEARKLLEQEVKKSVKAYLDCVSRARNekekkecekLLTPEARKFLAKQVL  1116
             R+ACEKLLTPEARKLLEQEVKKSVKAYLDCVS+A+ E EKKECEKLLTPEARKFLAKQVL
Sbjct  1348  RRACEKLLTPEARKLLEQEVKKSVKAYLDCVSQAKTEAEKKECEKLLTPEARKFLAKQVL  1407

Query  1117  SCLEKARNEEERKACLKNIPKDLQKNVLAKESLKAYKDCLSQARNEEERKACEKLLTPEA  1176
             +CLEKA NEEERKACLKN+PKDLQ NVLAKESLKAYKDCLSQARNEEER+ACEKLLTPEA
Sbjct  1408  NCLEKAGNEEERKACLKNLPKDLQENVLAKESLKAYKDCLSQARNEEERRACEKLLTPEA  1467

Query  1177  RKLLEQEVKKSVKAYLDCVSRARNEKEKQECEKLLTPEARKFLAKELQQKDKAIKDCLKN  1236
             RKLLEQEVKKSVKAYLDCVSRARNEKEK+ECEKLLTPEARKFLAKELQQKDKAIKDCLKN
Sbjct  1468  RKLLEQEVKKSVKAYLDCVSRARNEKEKKECEKLLTPEARKFLAKELQQKDKAIKDCLKN  1527

Query  1237  ADPNDRAAIMKCLDGLSDEEKLKYLQEAREKAVLDCLKTARTDEEKRKCQNLYSDLIQEI  1296
             ADPNDRAAIMKCLDGLSDEEKLKYLQEAREKAVLDCLKTARTDEEKRKCQNLYSDLIQEI
Sbjct  1528  ADPNDRAAIMKCLDGLSDEEKLKYLQEAREKAVLDCLKTARTDEEKRKCQNLYSDLIQEI  1587

Query  1297  QNKRTQSKQNQLSKTERLHQASECLDNLDDPTDQEAIEKCLEGLSDSERALILGIKRQAD  1356
             QNKRTQSKQNQLSKTERLHQASECLDNLDDPTDQ+AIE+CLEGLSDSERALILGIKRQAD
Sbjct  1588  QNKRTQSKQNQLSKTERLHQASECLDNLDDPTDQQAIEQCLEGLSDSERALILGIKRQAD  1647

Query  1357  EVDLIYSDLRNRKTFDNMAAKGYPLLPMDFKNGGDIATINATNVDADKIASDNPIYASIE  1416
             EVD IYSDLRNRKTFDNMAAKGYPLLPMDFKNGGDIATINATNVDADKIASDNPIYASIE
Sbjct  1648  EVDRIYSDLRNRKTFDNMAAKGYPLLPMDFKNGGDIATINATNVDADKIASDNPIYASIE  1707

Query  1417  PDITKQYETEKTIkdksleaklakalggdkkdddkekskkPTAETKAESNKIDKDVAETA  1476
             PDITKQYETEKTIKDK+LEAKLAKALGG+KKDDDKEKSKK+TAE+K ESNKIDKDVAETA
Sbjct  1708  PDITKQYETEKTIKDKNLEAKLAKALGGNKKDDDKEKSKKSTAEAKVESNKIDKDVAETA  1767

Query  1477  KNISEIALKNKKEKSGEFVDENGNPIddkkkeekqdeTSPVKQAFIGKSDPTFVLAQYTP  1536
             KNISEIALKNKKEK+GEFVDENGNPIDDKKK EKQDETSPVKQAFIGKSDPTFVLAQYTP
Sbjct  1768  KNISEIALKNKKEKNGEFVDENGNPIDDKKKAEKQDETSPVKQAFIGKSDPTFVLAQYTP  1827

Query  1537  IEITLTSKVDATLTGIVSGVVAKDVWNMNGTMILLDKGTKVYGNYQSVKGGTPIMTRLMI  1596
             IEITLTSKVDATLTGIVSGVVAKDVWNMNGTMILLDKGTKVYGNYQSVKGGTPIMTRLMI
Sbjct  1828  IEITLTSKVDATLTGIVSGVVAKDVWNMNGTMILLDKGTKVYGNYQSVKGGTPIMTRLMI  1887

Query  1597  VFTKAITPDGVIIPLANAQAAGMLGEAGVDGYVNNHFMKRIGFAVIASVVNSFLQTAPII  1656
             VFTKAITPDGVIIPLANAQAAGMLGEAGVDGYVNNHFMKRIGFAVIASVVNSFLQTAPII
Sbjct  1888  VFTKAITPDGVIIPLANAQAAGMLGEAGVDGYVNNHFMKRIGFAVIASVVNSFLQTAPII  1947

Query  1657  ALDKLIGLGKGRSERTPEFNYALGQAINGSMQSSAQMSNQILGQLMNIPPSFYKNEGDSI  1716
             ALDKLIGLGKGRSERTPEFNYALGQAINGSMQSSAQMSNQILGQLMNIPPSFYKNEGDSI
Sbjct  1948  ALDKLIGLGKGRSERTPEFNYALGQAINGSMQSSAQMSNQILGQLMNIPPSFYKNEGDSI  2007

Query  1717  KILTMDDIDFSGVYDVKITNKSVVDEIIKQSTKTLSREHEEITTSPKGGN  1766
             KILTMDDIDFSGVYDVKITNKSVVDEIIKQSTKTLSREHEEITTSPKGGN
Sbjct  2008  KILTMDDIDFSGVYDVKITNKSVVDEIIKQSTKTLSREHEEITTSPKGGN  2057


 Score =  183 bits (679),  Expect = 6e-47, Method: Compositional matrix adjust.
 Identities = 174/196 (89%), Positives = 182/196 (93%), Gaps = 2/196 (1%)

Query  1    MNEENDKLETSKKTQQHSPQDLSNEETIKANHFedsskeskessdHHLDNPTETKTNFDG  60
            MNEENDKLETSKKTQQHSPQDLSNEE+   NHFEDSSKESKESSDHHL+NPTETKTNFDG
Sbjct  1    MNEENDKLETSKKTQQHSPQDLSNEEATEINHFEDSSKESKESSDHHLNNPTETKTNFDG  60

Query  61   EKSEETQTQMDSGGNETSESSN--LADKLFKKARKLVDNKRPFTQQKNLdeeiqepneed  118
            +KSEETQTQMDSGG+ETSESSN  LADKLFKKARKLVDNKRPFTQQKNLDEE QE NEED
Sbjct  61   DKSEETQTQMDSGGDETSESSNGSLADKLFKKARKLVDNKRPFTQQKNLDEETQELNEED  120

Query  119  dqennGYQEETQMDLIDDETSKKTQQHSPQDLSNEETIKANHFedsskeskessdHHLDN  178
            DQENNGYQEETQ +LIDDETSKKTQQHSPQDLSNEE+   NHFEDSSKESKESSD  LDN
Sbjct  121  DQENNGYQEETQTGLIDDETSKKTQQHSPQDLSNEEATEINHFEDSSKESKESSDPYLDN  180

Query  179  STETKTNFDGEKSEEI  194
            +TETKTNFDG+KSEE 
Sbjct  181  PTETKTNFDGDKSEET  196


 Score =  168 bits (620),  Expect = 3e-42, Method: Compositional matrix adjust.
 Identities = 165/188 (88%), Positives = 172/188 (92%), Gaps = 2/188 (1%)

Query  9    ETSKKTQQHSPQDLSNEETIKANHFedsskeskessdHHLDNPTETKTNFDGEKSEETQT  68
            ETSKKTQQHSPQDLSNEE+   NHFEDSSKESKESSD  LDNPTETKTNFDG+KSEETQT
Sbjct  139  ETSKKTQQHSPQDLSNEEATEINHFEDSSKESKESSDPYLDNPTETKTNFDGDKSEETQT  198

Query  69   QMDSGGNETSESSN--LADKLFKKARKLVDNKRPFTQQKNLdeeiqepneeddqennGYQ  126
            QMDSGG+ETSESSN  LADKLFKKARKLVDNKRPFTQQKNLDEE QE NEEDDQENNGYQ
Sbjct  199  QMDSGGDETSESSNGSLADKLFKKARKLVDNKRPFTQQKNLDEETQELNEEDDQENNGYQ  258

Query  127  EETQMDLIDDETSKKTQQHSPQDLSNEETIKANHFedsskeskessdHHLDNSTETKTNF  186
            EETQ +LIDDETSKKTQQHSPQDLSNEE+   NHFEDSSKESKESSD  LDN+TETKTNF
Sbjct  259  EETQTGLIDDETSKKTQQHSPQDLSNEEATEINHFEDSSKESKESSDPYLDNPTETKTNF  318

Query  187  DGEKSEEI  194
            DG+KSEE 
Sbjct  319  DGDKSEET  326

22) HPSAT_04140 in NC_017359


> JQ685140|1|G1|442739065|AGC69792.1|Helicobacter_pylori_J166_isolate_MJ166sc3|+|1..6174|cagY|-|cag 
pathogenicity island protein 
Y
Length=2057

 Score = 1869 bits (7100),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 1624/1790 (91%), Positives = 1671/1790 (94%), Gaps = 80/1790 (4%)

Query  9     ETSKKTQQHSPQDLSNEETIKANHFedsskeskensdHHLDNSTETKTNFDGEKSEETQT  68
             ETSKKTQQHSPQDLSNEE+   NHFEDSSKESKE+SD  LDN+TETKTNFDG+KSEETQT
Sbjct  269   ETSKKTQQHSPQDLSNEEATEINHFEDSSKESKESSDPYLDNPTETKTNFDGDKSEETQT  328

Query  69    QMDSGDNETSESSN--LADKLFKKARKLVDNKRPFTQQKNLdeeiqepneeddqennGYQ  126
             QMDSG++ETSESSN  LADKLFKKARKLVDNKRPFTQQKNLDEE QE NEEDDQENNGYQ
Sbjct  329   QMDSGGDETSESSNGSLADKLFKKARKLVDNKRPFTQQKNLDEETQELNEEDDQENNGYQ  388

Query  127   EEIQMDLIDDETSKKTQQHSPQDLSNEETIKANHFedsskeskensdHHLDNSTETKTNF  186
             EE Q +LIDDETSKKTQQHSPQDLSNEE+   NHFEDSSKESKE+SD  LDN+TETKTNF
Sbjct  389   EETQTGLIDDETSKKTQQHSPQDLSNEEATEINHFEDSSKESKESSDPYLDNPTETKTNF  448

Query  187   DGEKSEEITNDSNDQEiikgskkkyiiggivvavliviilFSRSIFHYFIPLEDKSSRFS  246
             D +KSEEITNDSNDQEIIKGSKKKYIIGGIVVAVLIVIILFSRSIFHYF+PLEDKSSRFS
Sbjct  449   DEDKSEEITNDSNDQEIIKGSKKKYIIGGIVVAVLIVIILFSRSIFHYFMPLEDKSSRFS  508

Query  247   KDRNLYVNDEIQIRQEYNRLLKERNEKGNMIDKNLFFNDDPNRTLYNYLNIAEIEDKNPL  306
             KDRNLYVNDEIQIRQEYNRLLKERNEKGNMIDKNLFFNDDPNRTLYNYLNIAEIEDKNPL
Sbjct  509   KDRNLYVNDEIQIRQEYNRLLKERNEKGNMIDKNLFFNDDPNRTLYNYLNIAEIEDKNPL  568

Query  307   RAFYECISNGGNYEEClklikdkklqdqmkktlEAYNDCIKNAKTEEERIKCLDLIKDEN  366
             RAFYECISNGGNYEECLKLIKDKKLQDQMKKTLEAYNDCIKNAKTEEERIKCLDLIKDEN
Sbjct  569   RAFYECISNGGNYEECLKLIKDKKLQDQMKKTLEAYNDCIKNAKTEEERIKCLDLIKDEN  628

Query  367   LKKSLLNQQKVQVALDCLKNAKTDEERNECLKLINDPEIrekfrkelelqkelqeYKDCI  426
             LKKSLLNQQKVQVALDCLKNAKTDEER+ECLKLINDPEIREKFRKELELQKELQEYKDCI
Sbjct  629   LKKSLLNQQKVQVALDCLKNAKTDEERKECLKLINDPEIREKFRKELELQKELQEYKDCI  688

Query  427   KNAKTEAEKNECLKGLSKEAIERLKQQALDCLKNAKTDEERKKCLKNIPQDLQKELLADM  486
             KNAKTEAEKNECLKGLSKEAIERLKQQALDCLKNAKTDEER+ CLKNIPQDLQKELLADM
Sbjct  689   KNAKTEAEKNECLKGLSKEAIERLKQQALDCLKNAKTDEERNECLKNIPQDLQKELLADM  748

Query  487   SVKAYKDCVSKARNekekkecekLLTPEAKKKLEQQVLDCLKNAKTDEERKKCLKDLPKD  546
             SVKAYKDCVSKARNEKEK+ECEKLLTPEA+KKLEQQVLDCLKNAKTDEERKKCLKDLPKD
Sbjct  749   SVKAYKDCVSKARNEKEKQECEKLLTPEARKKLEQQVLDCLKNAKTDEERKKCLKDLPKD  808

Query  547   LQSDILAKESVKAYKDCVSQARTEAEKKECeklltpeakklleeeakeSVKAYLDCVSQa  606
             LQSDILAKESVKAYKDCVSQA+ EAEKKECEKLLTPEAKKLLEEEAKESVKAYLDCVSQA
Sbjct  809   LQSDILAKESVKAYKDCVSQAKNEAEKKECEKLLTPEAKKLLEEEAKESVKAYLDCVSQA  868

Query  607   kteaekkeceklltpeakkkleeakksvkaYLDCVSQakteaekkeceklltPEARKLLE  666
             KTEAEKKECEKLLTPEA+KKLEEAKKSVKAYLDCVSQAK E EKKECEKLLTPEARKLLE
Sbjct  869   KTEAEKKECEKLLTPEARKKLEEAKKSVKAYLDCVSQAKNEDEKKECEKLLTPEARKLLE  928

Query  667   QQALDCLKNAKTEAEKKRCVKDLPKDLQKKVLAKESVKAYLDCVSQakteaekkecekll  726
             QQALDCLKNAKT+ E+K+C+KDLPKDLQKKVLAKESVKAYLDCVSQAKTEAEKKECEKLL
Sbjct  929   QQALDCLKNAKTDEERKKCLKDLPKDLQKKVLAKESVKAYLDCVSQAKTEAEKKECEKLL  988

Query  727   tpeakklleeakeslkaYKDCVSRARNekekkecekLLTPEAKKLLEQQA-------LDC  779
             TPEA+KLLEEAKES+KAYKDCVS+ARNEKEKKECEKLLTPEAKKLLE++A       LDC
Sbjct  989   TPEARKLLEEAKESIKAYKDCVSKARNEKEKKECEKLLTPEAKKLLEEEAKESVKAYLDC  1048

Query  780   LKNAKTEAEKKRCVKDL-PKDLQKKVLAKESVKAYLDCVSQakteaekkeceklltPEAR  838
             + +AKTEAEKK C K L P   +K   AK SVKAYLDCVSQAK E EKKECEKLLTPEA+
Sbjct  1049  VSQAKTEAEKKECEKLLTPEAKKKLEEAKKSVKAYLDCVSQAKNEDEKKECEKLLTPEAK  1108

Query  839   KLLEE-------------------------------AKESLKAYKDCVSRARNekekkec  867
             KLLE+                               AKES+KAYKDCVSRARNEKEKKEC
Sbjct  1109  KLLEQQALDCLKNAKTEADKKRCVKDLPKDLQKKVLAKESVKAYKDCVSRARNEKEKKEC  1168

Query  868   ekLLTPEAKKLLEQEVKKSVKAYLDCVSQakteaekkeceklltPEARK-----------  916
             EKLLTPEAKKLLE E KKSVKAYLDCVSQAKTEAEKKECEKLLTPEA+K           
Sbjct  1169  EKLLTPEAKKLLE-EAKKSVKAYLDCVSQAKTEAEKKECEKLLTPEAKKLLEEAKESLKA  1227

Query  917   ---------------------------FLAKQALDCLKNAKTEAEKKRCVKDLPKDLQKK  949
                                        +L +QALDCLKNAKTEA+KKRCVKDLPKDLQKK
Sbjct  1228  YKDCVSRARNEKEKKECEKLLTPEAKKLLEQQALDCLKNAKTEADKKRCVKDLPKDLQKK  1287

Query  950   VLAKESVKAYLDCVSRARNekekkecekLLTPEARKLLEEAKESLKAYKDCLSQARNEEE  1009
             VLAKESVKAYLDCVSRARNEKEKKECEKLLTPEA+KLLEEAKESLKAYKDCLSQARNEEE
Sbjct  1288  VLAKESVKAYLDCVSRARNEKEKKECEKLLTPEAKKLLEEAKESLKAYKDCLSQARNEEE  1347

Query  1010  RKACEKLLTPEARKLLEQEVKKSVKAYLDCVSQakteaekkeceklltPEARKFLAKQAL  1069
             R+ACEKLLTPEARKLLEQEVKKSVKAYLDCVSQAKTEAEKKECEKLLTPEARKFLAKQ L
Sbjct  1348  RRACEKLLTPEARKLLEQEVKKSVKAYLDCVSQAKTEAEKKECEKLLTPEARKFLAKQVL  1407

Query  1070  SCLEKARNEEERKACLKNIPKDLQKNVLAKESLKAYKDCLSQARNEEERKACEKLLTPEA  1129
             +CLEKA NEEERKACLKN+PKDLQ NVLAKESLKAYKDCLSQARNEEER+ACEKLLTPEA
Sbjct  1408  NCLEKAGNEEERKACLKNLPKDLQENVLAKESLKAYKDCLSQARNEEERRACEKLLTPEA  1467

Query  1130  RKLLEQEVKKSVKAYLDCVSRARNEKEKQECEKLLTPEARKFLAKELQQKDKAIKDCLKN  1189
             RKLLEQEVKKSVKAYLDCVSRARNEKEK+ECEKLLTPEARKFLAKELQQKDKAIKDCLKN
Sbjct  1468  RKLLEQEVKKSVKAYLDCVSRARNEKEKKECEKLLTPEARKFLAKELQQKDKAIKDCLKN  1527

Query  1190  ADPNDRAAIMKCLDGLSDEEKLKYLQEAREKAVLDCLKTARTDEEKRKCQNLYSDLIQEI  1249
             ADPNDRAAIMKCLDGLSDEEKLKYLQEAREKAVLDCLKTARTDEEKRKCQNLYSDLIQEI
Sbjct  1528  ADPNDRAAIMKCLDGLSDEEKLKYLQEAREKAVLDCLKTARTDEEKRKCQNLYSDLIQEI  1587

Query  1250  QNKRTQSKQNQLSKTERLHQASECLDNLDDPTDQEAIEQCLEGLSDSERALILGIKRQAD  1309
             QNKRTQSKQNQLSKTERLHQASECLDNLDDPTDQ+AIEQCLEGLSDSERALILGIKRQAD
Sbjct  1588  QNKRTQSKQNQLSKTERLHQASECLDNLDDPTDQQAIEQCLEGLSDSERALILGIKRQAD  1647

Query  1310  EVDLIYSDLRNRKTFDNMAAKGYPLLPMDFKNGGDIATINATNVDADKIASDNPIYASIE  1369
             EVD IYSDLRNRKTFDNMAAKGYPLLPMDFKNGGDIATINATNVDADKIASDNPIYASIE
Sbjct  1648  EVDRIYSDLRNRKTFDNMAAKGYPLLPMDFKNGGDIATINATNVDADKIASDNPIYASIE  1707

Query  1370  PDITKQYETEKTIkdknleaklakalggnkkdddkekskksTAEARVESNKIDKDVAETA  1429
             PDITKQYETEKTIKDKNLEAKLAKALGGNKKDDDKEKSKKSTAEA+VESNKIDKDVAETA
Sbjct  1708  PDITKQYETEKTIKDKNLEAKLAKALGGNKKDDDKEKSKKSTAEAKVESNKIDKDVAETA  1767

Query  1430  KNISEIALKNKKEKSGEFVDENGNPIddkkktekqdetSPVKQAFIGKSDPTFVLAQYTP  1489
             KNISEIALKNKKEK+GEFVDENGNPIDDKKK+EKQDETSPVKQAFIGKSDPTFVLAQYTP
Sbjct  1768  KNISEIALKNKKEKNGEFVDENGNPIDDKKKAEKQDETSPVKQAFIGKSDPTFVLAQYTP  1827

Query  1490  IEITLTSKVDATLTGIVSGVVAKDVWNMNGTMILLDKGTKVYGNYQSVKGGTPIMTRLMI  1549
             IEITLTSKVDATLTGIVSGVVAKDVWNMNGTMILLDKGTKVYGNYQSVKGGTPIMTRLMI
Sbjct  1828  IEITLTSKVDATLTGIVSGVVAKDVWNMNGTMILLDKGTKVYGNYQSVKGGTPIMTRLMI  1887

Query  1550  VFTKAITPDGVIIPLANAQAAGMLGEAGVDGYVNNHFMKRIGFAVIASVVNSFLQTAPII  1609
             VFTKAITPDGVIIPLANAQAAGMLGEAGVDGYVNNHFMKRIGFAVIASVVNSFLQTAPII
Sbjct  1888  VFTKAITPDGVIIPLANAQAAGMLGEAGVDGYVNNHFMKRIGFAVIASVVNSFLQTAPII  1947

Query  1610  ALDKLIGLGKGRSERTPEFNYALGQAINGSMQSSAQMSNQILGQLMNIPPSFYKNEGDSI  1669
             ALDKLIGLGKGRSERTPEFNYALGQAINGSMQSSAQMSNQILGQLMNIPPSFYKNEGDSI
Sbjct  1948  ALDKLIGLGKGRSERTPEFNYALGQAINGSMQSSAQMSNQILGQLMNIPPSFYKNEGDSI  2007

Query  1670  KILTMDDIDFSGVYDVKITNKSVVDEIIKQSTKTLSREHEEITTSPKGGN  1719
             KILTMDDIDFSGVYDVKITNKSVVDEIIKQSTKTLSREHEEITTSPKGGN
Sbjct  2008  KILTMDDIDFSGVYDVKITNKSVVDEIIKQSTKTLSREHEEITTSPKGGN  2057


 Score =  178 bits (661),  Expect = 2e-45, Method: Compositional matrix adjust.
 Identities = 169/199 (85%), Positives = 182/199 (92%), Gaps = 2/199 (1%)

Query  1    MNEENDKLETSKKTQQHSPQDLSNEETIKANHFedsskeskensdHHLDNSTETKTNFDG  60
            MNEENDKLETSKKTQQHSPQDLSNEE+   NHFEDSSKESKE+SDHHL+N+TETKTNFDG
Sbjct  1    MNEENDKLETSKKTQQHSPQDLSNEEATEINHFEDSSKESKESSDHHLNNPTETKTNFDG  60

Query  61   EKSEETQTQMDSGDNETSESSN--LADKLFKKARKLVDNKRPFTQQKNLdeeiqepneed  118
            +KSEETQTQMDSG++ETSESSN  LADKLFKKARKLVDNKRPFTQQKNLDEE QE NEED
Sbjct  61   DKSEETQTQMDSGGDETSESSNGSLADKLFKKARKLVDNKRPFTQQKNLDEETQELNEED  120

Query  119  dqennGYQEEIQMDLIDDETSKKTQQHSPQDLSNEETIKANHFedsskeskensdHHLDN  178
            DQENNGYQEE Q +LIDDETSKKTQQHSPQDLSNEE+   NHFEDSSKESKE+SD  LDN
Sbjct  121  DQENNGYQEETQTGLIDDETSKKTQQHSPQDLSNEEATEINHFEDSSKESKESSDPYLDN  180

Query  179  STETKTNFDGEKSEEITND  197
            +TETKTNFDG+KSEE   +
Sbjct  181  PTETKTNFDGDKSEETQTQ  199


 Score =  163 bits (602),  Expect = 8e-41, Method: Compositional matrix adjust.
 Identities = 160/191 (84%), Positives = 172/191 (91%), Gaps = 2/191 (1%)

Query  9    ETSKKTQQHSPQDLSNEETIKANHFedsskeskensdHHLDNSTETKTNFDGEKSEETQT  68
            ETSKKTQQHSPQDLSNEE+   NHFEDSSKESKE+SD  LDN+TETKTNFDG+KSEETQT
Sbjct  139  ETSKKTQQHSPQDLSNEEATEINHFEDSSKESKESSDPYLDNPTETKTNFDGDKSEETQT  198

Query  69   QMDSGDNETSESSN--LADKLFKKARKLVDNKRPFTQQKNLdeeiqepneeddqennGYQ  126
            QMDSG++ETSESSN  LADKLFKKARKLVDNKRPFTQQKNLDEE QE NEEDDQENNGYQ
Sbjct  199  QMDSGGDETSESSNGSLADKLFKKARKLVDNKRPFTQQKNLDEETQELNEEDDQENNGYQ  258

Query  127  EEIQMDLIDDETSKKTQQHSPQDLSNEETIKANHFedsskeskensdHHLDNSTETKTNF  186
            EE Q +LIDDETSKKTQQHSPQDLSNEE+   NHFEDSSKESKE+SD  LDN+TETKTNF
Sbjct  259  EETQTGLIDDETSKKTQQHSPQDLSNEEATEINHFEDSSKESKESSDPYLDNPTETKTNF  318

Query  187  DGEKSEEITND  197
            DG+KSEE   +
Sbjct  319  DGDKSEETQTQ  329

23) HPV225_0522 in NC_017355


> JQ685140|1|G1|442739065|AGC69792.1|Helicobacter_pylori_J166_isolate_MJ166sc3|+|1..6174|cagY|-|cag 
pathogenicity island protein 
Y
Length=2057

 Score = 1819 bits (6908),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 1645/1799 (92%), Positives = 1693/1799 (95%), Gaps = 49/1799 (2%)

Query  9     ETSKKTQQHSPQDLSNEETIKANHFedsskeskessdHHLDNSTETKTNFDEYKSEETQT  68
             ETSKKTQQHSPQDLSNEE+   NHFEDSSKESKESSD  LDN+TETKTNFD  KSEETQT
Sbjct  269   ETSKKTQQHSPQDLSNEEATEINHFEDSSKESKESSDPYLDNPTETKTNFDGDKSEETQT  328

Query  69    QMDsggnetsessnssLADKLFKKARKLVDNKRPFTQQKNLdeeiqepneeddqennGYQ  128
             QMDSGG+ETSESSN+SLADKLFKKARKLVDNKRPFTQQKNLDEE QE NEEDDQENNGYQ
Sbjct  329   QMDSGGDETSESSNGSLADKLFKKARKLVDNKRPFTQQKNLDEETQELNEEDDQENNGYQ  388

Query  129   EETQMDLIDDETSKKTQQHSPQDLSNEETIKANHFedsskeskessdHHLDNSTETKTNF  188
             EETQ +LIDDETSKKTQQHSPQDLSNEE+   NHFEDSSKESKESSD  LDN+TETKTNF
Sbjct  389   EETQTGLIDDETSKKTQQHSPQDLSNEEATEINHFEDSSKESKESSDPYLDNPTETKTNF  448

Query  189   DGEKSEEITNNSNDQEiikgskkkyiiggivvavliviilFSRSIFHYFIPLEDKSSRFS  248
             D +KSEEITN+SNDQEIIKGSKKKYIIGGIVVAVLIVIILFSRSIFHYF+PLEDKSSRFS
Sbjct  449   DEDKSEEITNDSNDQEIIKGSKKKYIIGGIVVAVLIVIILFSRSIFHYFMPLEDKSSRFS  508

Query  249   KDRNLYVNDEIQIRQEYNRLLKERNEKGNMIDKNLFFNDDPNRTLYNYLNIAEIEDKNPL  308
             KDRNLYVNDEIQIRQEYNRLLKERNEKGNMIDKNLFFNDDPNRTLYNYLNIAEIEDKNPL
Sbjct  509   KDRNLYVNDEIQIRQEYNRLLKERNEKGNMIDKNLFFNDDPNRTLYNYLNIAEIEDKNPL  568

Query  309   RAFYECISNGGNYEEClklikdkklqdqmkktlEAYNDCIKNAKTEEERIKCLDLIKDEN  368
             RAFYECISNGGNYEECLKLIKDKKLQDQMKKTLEAYNDCIKNAKTEEERIKCLDLIKDEN
Sbjct  569   RAFYECISNGGNYEECLKLIKDKKLQDQMKKTLEAYNDCIKNAKTEEERIKCLDLIKDEN  628

Query  369   LKKSLLNQQKVQVALDCLKNAKTDEERNECLKLINDPEIrekfrkelelqkelqeYKDCI  428
             LKKSLLNQQKVQVALDCLKNAKTDEER+ECLKLINDPEIREKFRKELELQKELQEYKDCI
Sbjct  629   LKKSLLNQQKVQVALDCLKNAKTDEERKECLKLINDPEIREKFRKELELQKELQEYKDCI  688

Query  429   KNAKTEAEKNKCLKGLSKEAIERLKQQALDCLKNAKTDEERNECLKNIPQDLQKELLADM  488
             KNAKTEAEKN CLKGLSKEAIERLKQQALDCLKNAKTDEERNECLKNIPQDLQKELLADM
Sbjct  689   KNAKTEAEKNECLKGLSKEAIERLKQQALDCLKNAKTDEERNECLKNIPQDLQKELLADM  748

Query  489   SVKAYKDCVSKARNekekkecekLLTPEAKKLLEQQALDCLKNAKTDEERKKCLKDLPKD  548
             SVKAYKDCVSKARNEKEK+ECEKLLTPEA+K LEQQ LDCLKNAKTDEERKKCLKDLPKD
Sbjct  749   SVKAYKDCVSKARNEKEKQECEKLLTPEARKKLEQQVLDCLKNAKTDEERKKCLKDLPKD  808

Query  549   LQSDILAKESVKAYKDCVSQakteaekkeceklltpeakklleeeakeSVKAYLDCVSQa  608
             LQSDILAKESVKAYKDCVSQAK EAEKKECEKLLTPEAKKLLEEEAKESVKAYLDCVSQA
Sbjct  809   LQSDILAKESVKAYKDCVSQAKNEAEKKECEKLLTPEAKKLLEEEAKESVKAYLDCVSQA  868

Query  609   kteaekkeceklltpeakkkleeakksvkaYLDCVSQakteaekkeceklltPEAKKLLE  668
             KTEAEKKECEKLLTPEA+KKLEEAKKSVKAYLDCVSQAK E EKKECEKLLTPEA+KLLE
Sbjct  869   KTEAEKKECEKLLTPEARKKLEEAKKSVKAYLDCVSQAKNEDEKKECEKLLTPEARKLLE  928

Query  669   QQALDCLKNAKTDEERKKCLKNLPKDLQKKVLAKESVK----------------------  706
             QQALDCLKNAKTDEERKKCLK+LPKDLQKKVLAKESVK                      
Sbjct  929   QQALDCLKNAKTDEERKKCLKDLPKDLQKKVLAKESVKAYLDCVSQAKTEAEKKECEKLL  988

Query  707   ----------------AYLDCVSRARNekekkeceklltpeakkl-leeakeslkaYKDC  749
                             AY DCVS+ARNEKEKKECEKLLTPEAKKL  EEAKES+KAY DC
Sbjct  989   TPEARKLLEEAKESIKAYKDCVSKARNEKEKKECEKLLTPEAKKLLEEEAKESVKAYLDC  1048

Query  750   VSRSRNEKEKQECeklltpeakklleeeakeSVKAYLDCVSQARTEAEKKECeklltpea  809
             VS+++ E EK+ECEKLLTPEAKK LEE  K SVKAYLDCVSQA+ E EKKECEKLLTPEA
Sbjct  1049  VSQAKTEAEKKECEKLLTPEAKKKLEEAKK-SVKAYLDCVSQAKNEDEKKECEKLLTPEA  1107

Query  810   kkkleeakksvkaYLDCVSQakteaekkeceklltpeakklleeeakeSVKAYLDCVSRA  869
             KK LE+        LDC+ +AKTEA+KK C K L  + +K +      SVKAY DCVSRA
Sbjct  1108  KKLLEQQA------LDCLKNAKTEADKKRCVKDLPKDLQKKVLAKE--SVKAYKDCVSRA  1159

Query  870   RNekekkeceklltpeakkkleeakksvkaYLDCVSQARTEAEKKECEKLLTPEARKLLE  929
             RNEKEKKECEKLLTPEAKK LEEAKKSVKAYLDCVSQA+TEAEKKECEKLLTPEA+KLLE
Sbjct  1160  RNEKEKKECEKLLTPEAKKLLEEAKKSVKAYLDCVSQAKTEAEKKECEKLLTPEAKKLLE  1219

Query  930   QEVKKSVKAYLDCVSRARNekekkecekLLTPEAKKLLEQQALDCLKNAKTEAEKKRCVK  989
              E K S+KAY DCVSRARNEKEKKECEKLLTPEAKKLLEQQALDCLKNAKTEA+KKRCVK
Sbjct  1220  -EAKESLKAYKDCVSRARNEKEKKECEKLLTPEAKKLLEQQALDCLKNAKTEADKKRCVK  1278

Query  990   DLPKDLQKKVLAKESVKAYLDCVSRARNekekkeceklltpeakklleeakeslkaYKDC  1049
             DLPKDLQKKVLAKESVKAYLDCVSRARNEKEKKECEKLLTPEAKKLLEEAKESLKAYKDC
Sbjct  1279  DLPKDLQKKVLAKESVKAYLDCVSRARNEKEKKECEKLLTPEAKKLLEEAKESLKAYKDC  1338

Query  1050  LSQARNEEERKACEKLLTPEARKLLEQEVKKSVKAYLDCVSRARNEKEKQECEKLLTPEA  1109
             LSQARNEEER+ACEKLLTPEARKLLEQEVKKSVKAYLDCVS+A+ E EK+ECEKLLTPEA
Sbjct  1339  LSQARNEEERRACEKLLTPEARKLLEQEVKKSVKAYLDCVSQAKTEAEKKECEKLLTPEA  1398

Query  1110  RKFLAKQVLSCLEKARNEEERKACLKNIPKDLQKNVLAKESLKAYKDCLSQARNEEERKA  1169
             RKFLAKQVL+CLEKA NEEERKACLKN+PKDLQ NVLAKESLKAYKDCLSQARNEEER+A
Sbjct  1399  RKFLAKQVLNCLEKAGNEEERKACLKNLPKDLQENVLAKESLKAYKDCLSQARNEEERRA  1458

Query  1170  CEKLLTPEARKLLEQEVKKSVKAYLDCVSRARNEKEKQECEKLLTPEARKFLAKELQQKD  1229
             CEKLLTPEARKLLEQEVKKSVKAYLDCVSRARNEKEK+ECEKLLTPEARKFLAKELQQKD
Sbjct  1459  CEKLLTPEARKLLEQEVKKSVKAYLDCVSRARNEKEKKECEKLLTPEARKFLAKELQQKD  1518

Query  1230  KAIKDCLKNADPNDRAAIMKCLDGLSDEEKLKYLQEAREKAVLDCLKTARTDEEKRKCQN  1289
             KAIKDCLKNADPNDRAAIMKCLDGLSDEEKLKYLQEAREKAVLDCLKTARTDEEKRKCQN
Sbjct  1519  KAIKDCLKNADPNDRAAIMKCLDGLSDEEKLKYLQEAREKAVLDCLKTARTDEEKRKCQN  1578

Query  1290  LYSDLIQEIQNKRTQSKQNQLSKTERLHQASECLDNLDDPTDQEAIEKCLEGLSDSERAL  1349
             LYSDLIQEIQNKRTQSKQNQLSKTERLHQASECLDNLDDPTDQ+AIE+CLEGLSDSERAL
Sbjct  1579  LYSDLIQEIQNKRTQSKQNQLSKTERLHQASECLDNLDDPTDQQAIEQCLEGLSDSERAL  1638

Query  1350  ILGIKRQADEVDLIYSDLRNRKTFDNMAAKGYPLLPMDFKNGGDIATINATNVDTDKIAS  1409
             ILGIKRQADEVD IYSDLRNRKTFDNMAAKGYPLLPMDFKNGGDIATINATNVD+DKIAS
Sbjct  1639  ILGIKRQADEVDRIYSDLRNRKTFDNMAAKGYPLLPMDFKNGGDIATINATNVDADKIAS  1698

Query  1410  DNPIYASIEPDITKQYETEKTIkdknleaklakalggnkkdddkekskksTAEARVESNK  1469
             DNPIYASIEPDITKQYETEKTIKDKNLEAKLAKALGGNKKDDDKEKSKKSTAEA+VESNK
Sbjct  1699  DNPIYASIEPDITKQYETEKTIKDKNLEAKLAKALGGNKKDDDKEKSKKSTAEAKVESNK  1758

Query  1470  IDKDVAETAKNISEIALKNKKEKSGEFVDENGNPIddkkktekqdetSPVKQAFIGKSDP  1529
             IDKDVAETAKNISEIALKNKKEK+GEFVDENGNPIDDKKK+EKQDETSPVKQAFIGKSDP
Sbjct  1759  IDKDVAETAKNISEIALKNKKEKNGEFVDENGNPIDDKKKAEKQDETSPVKQAFIGKSDP  1818

Query  1530  TFVLAQYTPIEITLTSKVDATLTGIVSGVVAKDVWNMNGTMILLDKGTKVYGNYQSVKGG  1589
             TFVLAQYTPIEITLTSKVDATLTGIVSGVVAKDVWNMNGTMILLDKGTKVYGNYQSVKGG
Sbjct  1819  TFVLAQYTPIEITLTSKVDATLTGIVSGVVAKDVWNMNGTMILLDKGTKVYGNYQSVKGG  1878

Query  1590  TPIMTRLMIVFTKAITPDGVIIPLANAQAAGMLGEAGVDGYVNNHFMKRIGFAVIASVVN  1649
             TPIMTRLMIVFTKAITPDGVIIPLANAQAAGMLGEAGVDGYVNNHFMKRIGFAVIASVVN
Sbjct  1879  TPIMTRLMIVFTKAITPDGVIIPLANAQAAGMLGEAGVDGYVNNHFMKRIGFAVIASVVN  1938

Query  1650  SFLQTAPIIALDKLIGLGKGRSERTPEFNYALGQAINGSMQSSAQMSNQILGQLMNIPPS  1709
             SFLQTAPIIALDKLIGLGKGRSERTPEFNYALGQAINGSMQSSAQMSNQILGQLMNIPPS
Sbjct  1939  SFLQTAPIIALDKLIGLGKGRSERTPEFNYALGQAINGSMQSSAQMSNQILGQLMNIPPS  1998

Query  1710  FYKNEGDSIKILTMDDIDFSGVYDVKITNKSVVDEIIKQSTKTLSREHEEITTSPKGGN  1768
             FYKNEGDSIKILTMDDIDFSGVYDVKITNKSVVDEIIKQSTKTLSREHEEITTSPKGGN
Sbjct  1999  FYKNEGDSIKILTMDDIDFSGVYDVKITNKSVVDEIIKQSTKTLSREHEEITTSPKGGN  2057


 Score =  166 bits (614),  Expect = 9e-42, Method: Compositional matrix adjust.
 Identities = 173/196 (89%), Positives = 182/196 (93%), Gaps = 0/196 (0%)

Query  1    MNEENDKLETSKKTQQHSPQDLSNEETIKANHFedsskeskessdHHLDNSTETKTNFDE  60
            MNEENDKLETSKKTQQHSPQDLSNEE+   NHFEDSSKESKESSDHHL+N+TETKTNFD 
Sbjct  1    MNEENDKLETSKKTQQHSPQDLSNEEATEINHFEDSSKESKESSDHHLNNPTETKTNFDG  60

Query  61   YKSEETQTQMDsggnetsessnssLADKLFKKARKLVDNKRPFTQQKNLdeeiqepneed  120
             KSEETQTQMDSGG+ETSESSN+SLADKLFKKARKLVDNKRPFTQQKNLDEE QE NEED
Sbjct  61   DKSEETQTQMDSGGDETSESSNGSLADKLFKKARKLVDNKRPFTQQKNLDEETQELNEED  120

Query  121  dqennGYQEETQMDLIDDETSKKTQQHSPQDLSNEETIKANHFedsskeskessdHHLDN  180
            DQENNGYQEETQ +LIDDETSKKTQQHSPQDLSNEE+   NHFEDSSKESKESSD  LDN
Sbjct  121  DQENNGYQEETQTGLIDDETSKKTQQHSPQDLSNEEATEINHFEDSSKESKESSDPYLDN  180

Query  181  STETKTNFDGEKSEEI  196
            +TETKTNFDG+KSEE 
Sbjct  181  PTETKTNFDGDKSEET  196


 Score =  150 bits (554),  Expect = 5e-37, Method: Compositional matrix adjust.
 Identities = 164/188 (88%), Positives = 172/188 (92%), Gaps = 0/188 (0%)

Query  9    ETSKKTQQHSPQDLSNEETIKANHFedsskeskessdHHLDNSTETKTNFDEYKSEETQT  68
            ETSKKTQQHSPQDLSNEE+   NHFEDSSKESKESSD  LDN+TETKTNFD  KSEETQT
Sbjct  139  ETSKKTQQHSPQDLSNEEATEINHFEDSSKESKESSDPYLDNPTETKTNFDGDKSEETQT  198

Query  69   QMDsggnetsessnssLADKLFKKARKLVDNKRPFTQQKNLdeeiqepneeddqennGYQ  128
            QMDSGG+ETSESSN+SLADKLFKKARKLVDNKRPFTQQKNLDEE QE NEEDDQENNGYQ
Sbjct  199  QMDSGGDETSESSNGSLADKLFKKARKLVDNKRPFTQQKNLDEETQELNEEDDQENNGYQ  258

Query  129  EETQMDLIDDETSKKTQQHSPQDLSNEETIKANHFedsskeskessdHHLDNSTETKTNF  188
            EETQ +LIDDETSKKTQQHSPQDLSNEE+   NHFEDSSKESKESSD  LDN+TETKTNF
Sbjct  259  EETQTGLIDDETSKKTQQHSPQDLSNEEATEINHFEDSSKESKESSDPYLDNPTETKTNF  318

Query  189  DGEKSEEI  196
            DG+KSEE 
Sbjct  319  DGDKSEET  326

24) K748_07945 in NC_021882


> JQ685140|1|G1|442739065|AGC69792.1|Helicobacter_pylori_J166_isolate_MJ166sc3|+|1..6174|cagY|-|cag 
pathogenicity island protein 
Y
Length=2057

 Score = 1815 bits (6893),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 1597/1938 (83%), Positives = 1690/1938 (88%), Gaps = 114/1938 (5%)

Query  9     ENSKKTQQHSPQDLSNEEATEANHFedsskeskessdHHLDNPTETKTNFDGYKSEETQT  68
             E SKKTQQHSPQDLSNEEATE NHFEDSSKESKESSD  LDNPTETKTNFDG KSEETQT
Sbjct  139   ETSKKTQQHSPQDLSNEEATEINHFEDSSKESKESSDPYLDNPTETKTNFDGDKSEETQT  198

Query  69    QMDsggnetsessngnLADKLFKKARKLVDDKRPFTQQKILDEEIQEPNEEDDQESNGYQ  128
             QMDSGG+ETSESSNG+LADKLFKKARKLVD+KRPFTQQK LDEE QE NEEDDQE+NGYQ
Sbjct  199   QMDSGGDETSESSNGSLADKLFKKARKLVDNKRPFTQQKNLDEETQELNEEDDQENNGYQ  258

Query  129   EETQMDLIDDETSKKTQQHSPQDLSNEEATEANHFedsskeskessdHHLDNPTETKTNF  188
             EETQ +LIDDETSKKTQQHSPQDLSNEEATE NHFEDSSKESKESSD  LDNPTETKTNF
Sbjct  259   EETQTGLIDDETSKKTQQHSPQDLSNEEATEINHFEDSSKESKESSDPYLDNPTETKTNF  318

Query  189   DGYKSEETQTQMDsggnetsessngnLADKLFKKARKLVDDKRPFTQQKILDEEIQEPNE  248
             DG KSEETQTQMDSGG+ETSESSNG+LADKLFKKARKLVD+KRPFTQQK LDEE QE NE
Sbjct  319   DGDKSEETQTQMDSGGDETSESSNGSLADKLFKKARKLVDNKRPFTQQKNLDEETQELNE  378

Query  249   EDDQESNGYQEETQMDLIDDETSKKTQQHSPQDLSNEEATEANHFedsskeskessdHHL  308
             EDDQE+NGYQEETQ +LIDDETSKKTQQHSPQDLSNEEATE NHFEDSSKESKESSD  L
Sbjct  379   EDDQENNGYQEETQTGLIDDETSKKTQQHSPQDLSNEEATEINHFEDSSKESKESSDPYL  438

Query  309   DNPTETKTNFDEYESEEITNDSNDQEiikgskkkyiiggivvavliviilFSRSIFHYFI  368
             DNPTETKTNFDE  SEEITNDSNDQEIIKGSKKKYIIGGIVVAVLIVIILFSRSIFHYF+
Sbjct  439   DNPTETKTNFDEDKSEEITNDSNDQEIIKGSKKKYIIGGIVVAVLIVIILFSRSIFHYFM  498

Query  369   PLEDKSSRFSKDRNLYVNDEIQIRQEYNRLLKERNEKGNMIDKNLFFNDDPNRTLYNYLN  428
             PLEDKSSRFSKDRNLYVNDEIQIRQEYNRLLKERNEKGNMIDKNLFFNDDPNRTLYNYLN
Sbjct  499   PLEDKSSRFSKDRNLYVNDEIQIRQEYNRLLKERNEKGNMIDKNLFFNDDPNRTLYNYLN  558

Query  429   IAEIEDKNPLRAFYECISNGGNYEEClklikdkklqdqmkRTLEAYNDCIKNAKTEEERI  488
             IAEIEDKNPLRAFYECISNGGNYEECLKLIKDKKLQDQMK+TLEAYNDCIKNAKTEEERI
Sbjct  559   IAEIEDKNPLRAFYECISNGGNYEECLKLIKDKKLQDQMKKTLEAYNDCIKNAKTEEERI  618

Query  489   KCLDLIKDENLKKSLLNQQKVQVALDCLKNAKTDEERNECLKLINDPEIREKFRKELGLQ  548
             KCLDLIKDENLKKSLLNQQKVQVALDCLKNAKTDEER+ECLKLINDPEIREKFRKEL LQ
Sbjct  619   KCLDLIKDENLKKSLLNQQKVQVALDCLKNAKTDEERKECLKLINDPEIREKFRKELELQ  678

Query  549   KELQEYKDCIKNAKTEAEKNECLKGLSKEAIERLKQQALDCLKSAKTDEERKKCLKNIPK  608
             KELQEYKDCIKNAKTEAEKNECLKGLSKEAIERLKQQALDCLK+AKTDEER+ CLKNIP+
Sbjct  679   KELQEYKDCIKNAKTEAEKNECLKGLSKEAIERLKQQALDCLKNAKTDEERNECLKNIPQ  738

Query  609   DLQKELLADMSVKAYKDCVSKARNekekkecekLLTPEAKKKLEQQVLDCLKNAKTDEER  668
             DLQKELLADMSVKAYKDCVSKARNEKEK+ECEKLLTPEA+KKLEQQVLDCLKNAKTDEER
Sbjct  739   DLQKELLADMSVKAYKDCVSKARNEKEKQECEKLLTPEARKKLEQQVLDCLKNAKTDEER  798

Query  669   KKCLKDLPKDLQSDILAKKSLKAYKDCVSRARNEKEKQECeklltpeakklleeeakeSV  728
             KKCLKDLPKDLQSDILAK S+KAYKDCVS+A+NE EK+ECEKLLTPEAKKLLEEEAKESV
Sbjct  799   KKCLKDLPKDLQSDILAKESVKAYKDCVSQAKNEAEKKECEKLLTPEAKKLLEEEAKESV  858

Query  729   KAYLDCVSQakteaekkeceklltpeakkkleeakksvkaYLDCVSQakteaekkecekl  788
             KAYLDCVSQAKTEAEKKECEKLLTPEA+KKLEEAKKSVKAYLDCVSQAK E EKKECEKL
Sbjct  859   KAYLDCVSQAKTEAEKKECEKLLTPEARKKLEEAKKSVKAYLDCVSQAKNEDEKKECEKL  918

Query  789   ltPEAKKLLEQQALDCLKSAKTDEERKKCLKDLPKDLQKKVLAKESLKAYKDCVSRARNE  848
             LTPEA+KLLEQQALDCLK+AKTDEERKKCLKDLPKDLQKKVLAKES+KAY DCVS+A+ E
Sbjct  919   LTPEARKLLEQQALDCLKNAKTDEERKKCLKDLPKDLQKKVLAKESVKAYLDCVSQAKTE  978

Query  849   KEKQECeklltpeakklleeeakeSVKAYLDCVSQakteaekkeceklltPEAKKLLEQQ  908
              EK+EC   L     + L EEAKES+KAY DCVS+A+ E EKKECEKLLTPEAKKLLE++
Sbjct  979   AEKKEC-EKLLTPEARKLLEEAKESIKAYKDCVSKARNEKEKKECEKLLTPEAKKLLEEE  1037

Query  909   A-------LDCLKSAKTDEERKKCLKDL-PKDLQKKVLAKESLKAYKDCVSRARNEKEKQ  960
             A       LDC+  AKT+ E+K C K L P   +K   AK S+KAY DCVS+A+NE EK+
Sbjct  1038  AKESVKAYLDCVSQAKTEAEKKECEKLLTPEAKKKLEEAKKSVKAYLDCVSQAKNEDEKK  1097

Query  961   ECeklltpeakklleeakkslkaykDCVSRARNEKEKQECeklltpeakklleeakkslk  1020
             EC      E     E  K   +   DC+  A+ E +K+ C     P   +    AK S+K
Sbjct  1098  EC------EKLLTPEAKKLLEQQALDCLKNAKTEADKKRC-VKDLPKDLQKKVLAKESVK  1150

Query  1021  aykDCVSRARNEKEKQECEKLLTPEAKNLLEQQA------LDCLKSAKTEAEKKRCVKDL  1074
             AYKDCVSRARNEKEK+ECEKLLTPEAK+LLE+        LDC+  AKTEAEKK C K L
Sbjct  1151  AYKDCVSRARNEKEKKECEKLLTPEAKKLLEEAKKSVKAYLDCVSQAKTEAEKKECEKLL  1210

Query  1075  PKDLQKKVL--AKESVKAYLDCVSRARNekekkeceklltpeakklleeakeslkaYKDC  1132
               +  KK+L  AKES+KAY DCVSRARNEKEKKECEKLLTPEAKKLLE+         DC
Sbjct  1211  TPE-AKKLLEEAKESLKAYKDCVSRARNEKEKKECEKLLTPEAKKLLEQQAL------DC  1263

Query  1133  LSQARNEEERRACEKLLTPE-ARKLLEQEVKKSVKAYLDCVSRARNEKEKQECEKLLTPE  1191
             L +A+ E +++ C K L  +  +K+L    K SVKAYLDCVSRARNEKEK+ECEKLLTPE
Sbjct  1264  LKNAKTEADKKRCVKDLPKDLQKKVL---AKESVKAYLDCVSRARNEKEKKECEKLLTPE  1320

Query  1192  ARKFL--AKQVL----SCLEKARNEEERKACLKNIPKDLQKNVL---AKESLKAYKDCLS  1242
             A+K+L  AK+ L     CL +ARNEEER+AC K +  +  +++L    K S+KAY DC+S
Sbjct  1321  AKKLLEEAKESLKAYKDCLSQARNEEERRACEKLLTPE-ARKLLEQEVKKSVKAYLDCVS  1379

Query  1243  QARNEEERRACEKLLTPEARKLLEQEV------------------------------KKS  1272
             QA+ E E++ CEKLLTPEARK+L ++V                              K S
Sbjct  1380  QAKTEAEKKECEKLLTPEARKFLAKQVLNCLEKAGNEEERKACLKNLPKDLQENVLAKES  1439

Query  1273  VKAYLDCVSRARNEKEKQECEKL-------------------------------------  1295
             +KAY DC+S+ARNE E++ CEKL                                     
Sbjct  1440  LKAYKDCLSQARNEEERRACEKLLTPEARKLLEQEVKKSVKAYLDCVSRARNEKEKKECE  1499

Query  1296  --LTPEARKFLAKELQQKDKAIKDCLKNADPNDRAAIMKCLDGLSDEEKLKYLQEAREKA  1353
               LTPEARKFLAKELQQKDKAIKDCLKNADPNDRAAIMKCLDGLSDEEKLKYLQEAREKA
Sbjct  1500  KLLTPEARKFLAKELQQKDKAIKDCLKNADPNDRAAIMKCLDGLSDEEKLKYLQEAREKA  1559

Query  1354  VLDCLKTARTDEEKRKCQNLYSDLIQEIQNKRTQNKQNQLSKTERLHQASECLDNLDDPT  1413
             VLDCLKTARTDEEKRKCQNLYSDLIQEIQNKRTQ+KQNQLSKTERLHQASECLDNLDDPT
Sbjct  1560  VLDCLKTARTDEEKRKCQNLYSDLIQEIQNKRTQSKQNQLSKTERLHQASECLDNLDDPT  1619

Query  1414  DQEAIEQCLEGLSDSERALILGIKRQADEVDLIYSDLRNRKTFDNMAAKGYPLLPMDFKN  1473
             DQ+AIEQCLEGLSDSERALILGIKRQADEVD IYSDLRNRKTFDNMAAKGYPLLPMDFKN
Sbjct  1620  DQQAIEQCLEGLSDSERALILGIKRQADEVDRIYSDLRNRKTFDNMAAKGYPLLPMDFKN  1679

Query  1474  GGDIATINATNVDADKIASDNPIYASIEPDITKQYETEKTIkdknleaklakalggnkkd  1533
             GGDIATINATNVDADKIASDNPIYASIEPDITKQYETEKTIKDKNLEAKLAKALGGNKKD
Sbjct  1680  GGDIATINATNVDADKIASDNPIYASIEPDITKQYETEKTIKDKNLEAKLAKALGGNKKD  1739

Query  1534  ddkekskkstaeakvesNKIDKDVAETAKNISEIALKNKKEKSGEFVDENGNPIDDKKKA  1593
             DDKEKSKKSTAEAKVESNKIDKDVAETAKNISEIALKNKKEK+GEFVDENGNPIDDKKKA
Sbjct  1740  DDKEKSKKSTAEAKVESNKIDKDVAETAKNISEIALKNKKEKNGEFVDENGNPIDDKKKA  1799

Query  1594  ETQDETSPVKQAFIGKSDPTFVLAQYTPIEITLTSKVDATLTGIVSGVVAKDVWNMNGTM  1653
             E QDETSPVKQAFIGKSDPTFVLAQYTPIEITLTSKVDATLTGIVSGVVAKDVWNMNGTM
Sbjct  1800  EKQDETSPVKQAFIGKSDPTFVLAQYTPIEITLTSKVDATLTGIVSGVVAKDVWNMNGTM  1859

Query  1654  ILLDKGTKVYGNYQSVKGGTPIMTRLMIVFTKAITPDGVIIPLANAQAAGMLGEAGVDGY  1713
             ILLDKGTKVYGNYQSVKGGTPIMTRLMIVFTKAITPDGVIIPLANAQAAGMLGEAGVDGY
Sbjct  1860  ILLDKGTKVYGNYQSVKGGTPIMTRLMIVFTKAITPDGVIIPLANAQAAGMLGEAGVDGY  1919

Query  1714  VNNHFMKRIGFAVIASVVNSFLQTAPIIALDKLIGLGKGRSERTPEFNYALGQAINGSMQ  1773
             VNNHFMKRIGFAVIASVVNSFLQTAPIIALDKLIGLGKGRSERTPEFNYALGQAINGSMQ
Sbjct  1920  VNNHFMKRIGFAVIASVVNSFLQTAPIIALDKLIGLGKGRSERTPEFNYALGQAINGSMQ  1979

Query  1774  SSAQMSNQILGQLMNIPPSFYKNEGDSIKILTMDDIDFSGVYDVKITNKSVVDEIIKQST  1833
             SSAQMSNQILGQLMNIPPSFYKNEGDSIKILTMDDIDFSGVYDVKITNKSVVDEIIKQST
Sbjct  1980  SSAQMSNQILGQLMNIPPSFYKNEGDSIKILTMDDIDFSGVYDVKITNKSVVDEIIKQST  2039

Query  1834  KTLSREHEEITTSPKGGN  1851
             KTLSREHEEITTSPKGGN
Sbjct  2040  KTLSREHEEITTSPKGGN  2057


 Score =  307 bits (1151),  Expect = 3e-84, Method: Compositional matrix adjust.
 Identities = 293/326 (90%), Positives = 304/326 (94%), Gaps = 0/326 (0%)

Query  1    MNEENDKLENSKKTQQHSPQDLSNEEATEANHFedsskeskessdHHLDNPTETKTNFDG  60
            MNEENDKLE SKKTQQHSPQDLSNEEATE NHFEDSSKESKESSDHHL+NPTETKTNFDG
Sbjct  1    MNEENDKLETSKKTQQHSPQDLSNEEATEINHFEDSSKESKESSDHHLNNPTETKTNFDG  60

Query  61   YKSEETQTQMDsggnetsessngnLADKLFKKARKLVDDKRPFTQQKILDEEIQEPNEED  120
             KSEETQTQMDSGG+ETSESSNG+LADKLFKKARKLVD+KRPFTQQK LDEE QE NEED
Sbjct  61   DKSEETQTQMDSGGDETSESSNGSLADKLFKKARKLVDNKRPFTQQKNLDEETQELNEED  120

Query  121  DQESNGYQEETQMDLIDDETSKKTQQHSPQDLSNEEATEANHFedsskeskessdHHLDN  180
            DQE+NGYQEETQ +LIDDETSKKTQQHSPQDLSNEEATE NHFEDSSKESKESSD  LDN
Sbjct  121  DQENNGYQEETQTGLIDDETSKKTQQHSPQDLSNEEATEINHFEDSSKESKESSDPYLDN  180

Query  181  PTETKTNFDGYKSEETQTQMDsggnetsessngnLADKLFKKARKLVDDKRPFTQQKILD  240
            PTETKTNFDG KSEETQTQMDSGG+ETSESSNG+LADKLFKKARKLVD+KRPFTQQK LD
Sbjct  181  PTETKTNFDGDKSEETQTQMDSGGDETSESSNGSLADKLFKKARKLVDNKRPFTQQKNLD  240

Query  241  EEIQEPNEEDDQESNGYQEETQMDLIDDETSKKTQQHSPQDLSNEEATEANHFedsskes  300
            EE QE NEEDDQE+NGYQEETQ +LIDDETSKKTQQHSPQDLSNEEATE NHFEDSSKES
Sbjct  241  EETQELNEEDDQENNGYQEETQTGLIDDETSKKTQQHSPQDLSNEEATEINHFEDSSKES  300

Query  301  kessdHHLDNPTETKTNFDEYESEEI  326
            KESSD  LDNPTETKTNFD   SEE 
Sbjct  301  KESSDPYLDNPTETKTNFDGDKSEET  326

25) K749_01335 in NC_021216


> JQ685140|1|G1|442739065|AGC69792.1|Helicobacter_pylori_J166_isolate_MJ166sc3|+|1..6174|cagY|-|cag 
pathogenicity island protein 
Y
Length=2057

 Score = 1815 bits (6893),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 1597/1938 (83%), Positives = 1690/1938 (88%), Gaps = 114/1938 (5%)

Query  9     ENSKKTQQHSPQDLSNEEATEANHFedsskeskessdHHLDNPTETKTNFDGYKSEETQT  68
             E SKKTQQHSPQDLSNEEATE NHFEDSSKESKESSD  LDNPTETKTNFDG KSEETQT
Sbjct  139   ETSKKTQQHSPQDLSNEEATEINHFEDSSKESKESSDPYLDNPTETKTNFDGDKSEETQT  198

Query  69    QMDsggnetsessngnLADKLFKKARKLVDDKRPFTQQKILDEEIQEPNEEDDQESNGYQ  128
             QMDSGG+ETSESSNG+LADKLFKKARKLVD+KRPFTQQK LDEE QE NEEDDQE+NGYQ
Sbjct  199   QMDSGGDETSESSNGSLADKLFKKARKLVDNKRPFTQQKNLDEETQELNEEDDQENNGYQ  258

Query  129   EETQMDLIDDETSKKTQQHSPQDLSNEEATEANHFedsskeskessdHHLDNPTETKTNF  188
             EETQ +LIDDETSKKTQQHSPQDLSNEEATE NHFEDSSKESKESSD  LDNPTETKTNF
Sbjct  259   EETQTGLIDDETSKKTQQHSPQDLSNEEATEINHFEDSSKESKESSDPYLDNPTETKTNF  318

Query  189   DGYKSEETQTQMDsggnetsessngnLADKLFKKARKLVDDKRPFTQQKILDEEIQEPNE  248
             DG KSEETQTQMDSGG+ETSESSNG+LADKLFKKARKLVD+KRPFTQQK LDEE QE NE
Sbjct  319   DGDKSEETQTQMDSGGDETSESSNGSLADKLFKKARKLVDNKRPFTQQKNLDEETQELNE  378

Query  249   EDDQESNGYQEETQMDLIDDETSKKTQQHSPQDLSNEEATEANHFedsskeskessdHHL  308
             EDDQE+NGYQEETQ +LIDDETSKKTQQHSPQDLSNEEATE NHFEDSSKESKESSD  L
Sbjct  379   EDDQENNGYQEETQTGLIDDETSKKTQQHSPQDLSNEEATEINHFEDSSKESKESSDPYL  438

Query  309   DNPTETKTNFDEYESEEITNDSNDQEiikgskkkyiiggivvavliviilFSRSIFHYFI  368
             DNPTETKTNFDE  SEEITNDSNDQEIIKGSKKKYIIGGIVVAVLIVIILFSRSIFHYF+
Sbjct  439   DNPTETKTNFDEDKSEEITNDSNDQEIIKGSKKKYIIGGIVVAVLIVIILFSRSIFHYFM  498

Query  369   PLEDKSSRFSKDRNLYVNDEIQIRQEYNRLLKERNEKGNMIDKNLFFNDDPNRTLYNYLN  428
             PLEDKSSRFSKDRNLYVNDEIQIRQEYNRLLKERNEKGNMIDKNLFFNDDPNRTLYNYLN
Sbjct  499   PLEDKSSRFSKDRNLYVNDEIQIRQEYNRLLKERNEKGNMIDKNLFFNDDPNRTLYNYLN  558

Query  429   IAEIEDKNPLRAFYECISNGGNYEEClklikdkklqdqmkRTLEAYNDCIKNAKTEEERI  488
             IAEIEDKNPLRAFYECISNGGNYEECLKLIKDKKLQDQMK+TLEAYNDCIKNAKTEEERI
Sbjct  559   IAEIEDKNPLRAFYECISNGGNYEECLKLIKDKKLQDQMKKTLEAYNDCIKNAKTEEERI  618

Query  489   KCLDLIKDENLKKSLLNQQKVQVALDCLKNAKTDEERNECLKLINDPEIREKFRKELGLQ  548
             KCLDLIKDENLKKSLLNQQKVQVALDCLKNAKTDEER+ECLKLINDPEIREKFRKEL LQ
Sbjct  619   KCLDLIKDENLKKSLLNQQKVQVALDCLKNAKTDEERKECLKLINDPEIREKFRKELELQ  678

Query  549   KELQEYKDCIKNAKTEAEKNECLKGLSKEAIERLKQQALDCLKSAKTDEERKKCLKNIPK  608
             KELQEYKDCIKNAKTEAEKNECLKGLSKEAIERLKQQALDCLK+AKTDEER+ CLKNIP+
Sbjct  679   KELQEYKDCIKNAKTEAEKNECLKGLSKEAIERLKQQALDCLKNAKTDEERNECLKNIPQ  738

Query  609   DLQKELLADMSVKAYKDCVSKARNekekkecekLLTPEAKKKLEQQVLDCLKNAKTDEER  668
             DLQKELLADMSVKAYKDCVSKARNEKEK+ECEKLLTPEA+KKLEQQVLDCLKNAKTDEER
Sbjct  739   DLQKELLADMSVKAYKDCVSKARNEKEKQECEKLLTPEARKKLEQQVLDCLKNAKTDEER  798

Query  669   KKCLKDLPKDLQSDILAKKSLKAYKDCVSRARNEKEKQECeklltpeakklleeeakeSV  728
             KKCLKDLPKDLQSDILAK S+KAYKDCVS+A+NE EK+ECEKLLTPEAKKLLEEEAKESV
Sbjct  799   KKCLKDLPKDLQSDILAKESVKAYKDCVSQAKNEAEKKECEKLLTPEAKKLLEEEAKESV  858

Query  729   KAYLDCVSQakteaekkeceklltpeakkkleeakksvkaYLDCVSQakteaekkecekl  788
             KAYLDCVSQAKTEAEKKECEKLLTPEA+KKLEEAKKSVKAYLDCVSQAK E EKKECEKL
Sbjct  859   KAYLDCVSQAKTEAEKKECEKLLTPEARKKLEEAKKSVKAYLDCVSQAKNEDEKKECEKL  918

Query  789   ltPEAKKLLEQQALDCLKSAKTDEERKKCLKDLPKDLQKKVLAKESLKAYKDCVSRARNE  848
             LTPEA+KLLEQQALDCLK+AKTDEERKKCLKDLPKDLQKKVLAKES+KAY DCVS+A+ E
Sbjct  919   LTPEARKLLEQQALDCLKNAKTDEERKKCLKDLPKDLQKKVLAKESVKAYLDCVSQAKTE  978

Query  849   KEKQECeklltpeakklleeeakeSVKAYLDCVSQakteaekkeceklltPEAKKLLEQQ  908
              EK+EC   L     + L EEAKES+KAY DCVS+A+ E EKKECEKLLTPEAKKLLE++
Sbjct  979   AEKKEC-EKLLTPEARKLLEEAKESIKAYKDCVSKARNEKEKKECEKLLTPEAKKLLEEE  1037

Query  909   A-------LDCLKSAKTDEERKKCLKDL-PKDLQKKVLAKESLKAYKDCVSRARNEKEKQ  960
             A       LDC+  AKT+ E+K C K L P   +K   AK S+KAY DCVS+A+NE EK+
Sbjct  1038  AKESVKAYLDCVSQAKTEAEKKECEKLLTPEAKKKLEEAKKSVKAYLDCVSQAKNEDEKK  1097

Query  961   ECeklltpeakklleeakkslkaykDCVSRARNEKEKQECeklltpeakklleeakkslk  1020
             EC      E     E  K   +   DC+  A+ E +K+ C     P   +    AK S+K
Sbjct  1098  EC------EKLLTPEAKKLLEQQALDCLKNAKTEADKKRC-VKDLPKDLQKKVLAKESVK  1150

Query  1021  aykDCVSRARNEKEKQECEKLLTPEAKNLLEQQA------LDCLKSAKTEAEKKRCVKDL  1074
             AYKDCVSRARNEKEK+ECEKLLTPEAK+LLE+        LDC+  AKTEAEKK C K L
Sbjct  1151  AYKDCVSRARNEKEKKECEKLLTPEAKKLLEEAKKSVKAYLDCVSQAKTEAEKKECEKLL  1210

Query  1075  PKDLQKKVL--AKESVKAYLDCVSRARNekekkeceklltpeakklleeakeslkaYKDC  1132
               +  KK+L  AKES+KAY DCVSRARNEKEKKECEKLLTPEAKKLLE+         DC
Sbjct  1211  TPE-AKKLLEEAKESLKAYKDCVSRARNEKEKKECEKLLTPEAKKLLEQQAL------DC  1263

Query  1133  LSQARNEEERRACEKLLTPE-ARKLLEQEVKKSVKAYLDCVSRARNEKEKQECEKLLTPE  1191
             L +A+ E +++ C K L  +  +K+L    K SVKAYLDCVSRARNEKEK+ECEKLLTPE
Sbjct  1264  LKNAKTEADKKRCVKDLPKDLQKKVL---AKESVKAYLDCVSRARNEKEKKECEKLLTPE  1320

Query  1192  ARKFL--AKQVL----SCLEKARNEEERKACLKNIPKDLQKNVL---AKESLKAYKDCLS  1242
             A+K+L  AK+ L     CL +ARNEEER+AC K +  +  +++L    K S+KAY DC+S
Sbjct  1321  AKKLLEEAKESLKAYKDCLSQARNEEERRACEKLLTPE-ARKLLEQEVKKSVKAYLDCVS  1379

Query  1243  QARNEEERRACEKLLTPEARKLLEQEV------------------------------KKS  1272
             QA+ E E++ CEKLLTPEARK+L ++V                              K S
Sbjct  1380  QAKTEAEKKECEKLLTPEARKFLAKQVLNCLEKAGNEEERKACLKNLPKDLQENVLAKES  1439

Query  1273  VKAYLDCVSRARNEKEKQECEKL-------------------------------------  1295
             +KAY DC+S+ARNE E++ CEKL                                     
Sbjct  1440  LKAYKDCLSQARNEEERRACEKLLTPEARKLLEQEVKKSVKAYLDCVSRARNEKEKKECE  1499

Query  1296  --LTPEARKFLAKELQQKDKAIKDCLKNADPNDRAAIMKCLDGLSDEEKLKYLQEAREKA  1353
               LTPEARKFLAKELQQKDKAIKDCLKNADPNDRAAIMKCLDGLSDEEKLKYLQEAREKA
Sbjct  1500  KLLTPEARKFLAKELQQKDKAIKDCLKNADPNDRAAIMKCLDGLSDEEKLKYLQEAREKA  1559

Query  1354  VLDCLKTARTDEEKRKCQNLYSDLIQEIQNKRTQNKQNQLSKTERLHQASECLDNLDDPT  1413
             VLDCLKTARTDEEKRKCQNLYSDLIQEIQNKRTQ+KQNQLSKTERLHQASECLDNLDDPT
Sbjct  1560  VLDCLKTARTDEEKRKCQNLYSDLIQEIQNKRTQSKQNQLSKTERLHQASECLDNLDDPT  1619

Query  1414  DQEAIEQCLEGLSDSERALILGIKRQADEVDLIYSDLRNRKTFDNMAAKGYPLLPMDFKN  1473
             DQ+AIEQCLEGLSDSERALILGIKRQADEVD IYSDLRNRKTFDNMAAKGYPLLPMDFKN
Sbjct  1620  DQQAIEQCLEGLSDSERALILGIKRQADEVDRIYSDLRNRKTFDNMAAKGYPLLPMDFKN  1679

Query  1474  GGDIATINATNVDADKIASDNPIYASIEPDITKQYETEKTIkdknleaklakalggnkkd  1533
             GGDIATINATNVDADKIASDNPIYASIEPDITKQYETEKTIKDKNLEAKLAKALGGNKKD
Sbjct  1680  GGDIATINATNVDADKIASDNPIYASIEPDITKQYETEKTIKDKNLEAKLAKALGGNKKD  1739

Query  1534  ddkekskkstaeakvesNKIDKDVAETAKNISEIALKNKKEKSGEFVDENGNPIDDKKKA  1593
             DDKEKSKKSTAEAKVESNKIDKDVAETAKNISEIALKNKKEK+GEFVDENGNPIDDKKKA
Sbjct  1740  DDKEKSKKSTAEAKVESNKIDKDVAETAKNISEIALKNKKEKNGEFVDENGNPIDDKKKA  1799

Query  1594  ETQDETSPVKQAFIGKSDPTFVLAQYTPIEITLTSKVDATLTGIVSGVVAKDVWNMNGTM  1653
             E QDETSPVKQAFIGKSDPTFVLAQYTPIEITLTSKVDATLTGIVSGVVAKDVWNMNGTM
Sbjct  1800  EKQDETSPVKQAFIGKSDPTFVLAQYTPIEITLTSKVDATLTGIVSGVVAKDVWNMNGTM  1859

Query  1654  ILLDKGTKVYGNYQSVKGGTPIMTRLMIVFTKAITPDGVIIPLANAQAAGMLGEAGVDGY  1713
             ILLDKGTKVYGNYQSVKGGTPIMTRLMIVFTKAITPDGVIIPLANAQAAGMLGEAGVDGY
Sbjct  1860  ILLDKGTKVYGNYQSVKGGTPIMTRLMIVFTKAITPDGVIIPLANAQAAGMLGEAGVDGY  1919

Query  1714  VNNHFMKRIGFAVIASVVNSFLQTAPIIALDKLIGLGKGRSERTPEFNYALGQAINGSMQ  1773
             VNNHFMKRIGFAVIASVVNSFLQTAPIIALDKLIGLGKGRSERTPEFNYALGQAINGSMQ
Sbjct  1920  VNNHFMKRIGFAVIASVVNSFLQTAPIIALDKLIGLGKGRSERTPEFNYALGQAINGSMQ  1979

Query  1774  SSAQMSNQILGQLMNIPPSFYKNEGDSIKILTMDDIDFSGVYDVKITNKSVVDEIIKQST  1833
             SSAQMSNQILGQLMNIPPSFYKNEGDSIKILTMDDIDFSGVYDVKITNKSVVDEIIKQST
Sbjct  1980  SSAQMSNQILGQLMNIPPSFYKNEGDSIKILTMDDIDFSGVYDVKITNKSVVDEIIKQST  2039

Query  1834  KTLSREHEEITTSPKGGN  1851
             KTLSREHEEITTSPKGGN
Sbjct  2040  KTLSREHEEITTSPKGGN  2057


 Score =  307 bits (1151),  Expect = 3e-84, Method: Compositional matrix adjust.
 Identities = 293/326 (90%), Positives = 304/326 (94%), Gaps = 0/326 (0%)

Query  1    MNEENDKLENSKKTQQHSPQDLSNEEATEANHFedsskeskessdHHLDNPTETKTNFDG  60
            MNEENDKLE SKKTQQHSPQDLSNEEATE NHFEDSSKESKESSDHHL+NPTETKTNFDG
Sbjct  1    MNEENDKLETSKKTQQHSPQDLSNEEATEINHFEDSSKESKESSDHHLNNPTETKTNFDG  60

Query  61   YKSEETQTQMDsggnetsessngnLADKLFKKARKLVDDKRPFTQQKILDEEIQEPNEED  120
             KSEETQTQMDSGG+ETSESSNG+LADKLFKKARKLVD+KRPFTQQK LDEE QE NEED
Sbjct  61   DKSEETQTQMDSGGDETSESSNGSLADKLFKKARKLVDNKRPFTQQKNLDEETQELNEED  120

Query  121  DQESNGYQEETQMDLIDDETSKKTQQHSPQDLSNEEATEANHFedsskeskessdHHLDN  180
            DQE+NGYQEETQ +LIDDETSKKTQQHSPQDLSNEEATE NHFEDSSKESKESSD  LDN
Sbjct  121  DQENNGYQEETQTGLIDDETSKKTQQHSPQDLSNEEATEINHFEDSSKESKESSDPYLDN  180

Query  181  PTETKTNFDGYKSEETQTQMDsggnetsessngnLADKLFKKARKLVDDKRPFTQQKILD  240
            PTETKTNFDG KSEETQTQMDSGG+ETSESSNG+LADKLFKKARKLVD+KRPFTQQK LD
Sbjct  181  PTETKTNFDGDKSEETQTQMDSGGDETSESSNGSLADKLFKKARKLVDNKRPFTQQKNLD  240

Query  241  EEIQEPNEEDDQESNGYQEETQMDLIDDETSKKTQQHSPQDLSNEEATEANHFedsskes  300
            EE QE NEEDDQE+NGYQEETQ +LIDDETSKKTQQHSPQDLSNEEATE NHFEDSSKES
Sbjct  241  EETQELNEEDDQENNGYQEETQTGLIDDETSKKTQQHSPQDLSNEEATEINHFEDSSKES  300

Query  301  kessdHHLDNPTETKTNFDEYESEEI  326
            KESSD  LDNPTETKTNFD   SEE 
Sbjct  301  KESSDPYLDNPTETKTNFDGDKSEET  326

26) HPSH417_02515 in NC_017739


> JQ685140|1|G1|442739065|AGC69792.1|Helicobacter_pylori_J166_isolate_MJ166sc3|+|1..6174|cagY|-|cag 
pathogenicity island protein 
Y
Length=2057

 Score = 1801 bits (6839),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 1578/1798 (88%), Positives = 1639/1798 (92%), Gaps = 89/1798 (4%)

Query  9     ETSKKTQQHSPQDLSNEETIKANHFedsskeskkssdHHLDNSTETKTNFDEYKSEETQT  68
             ETSKKTQQHSPQDLSNEE+   NHFEDSSKESK SSD  LDN+TETKTNFD  KSEETQT
Sbjct  269   ETSKKTQQHSPQDLSNEEATEINHFEDSSKESKESSDPYLDNPTETKTNFDGDKSEETQT  328

Query  69    QMDSGGNETSESSN--LADKLFKKARKLVDNKRPFTQQKNLdeeiqepneeddqennGYQ  126
             QMDSGG+ETSESSN  LADKLFKKARKLVDNKRPFTQQKNLDEE QE NEEDDQENNGYQ
Sbjct  329   QMDSGGDETSESSNGSLADKLFKKARKLVDNKRPFTQQKNLDEETQELNEEDDQENNGYQ  388

Query  127   EETQMDLIDDETSKKTQQHSPQDLSNEETIKANHFedsskeskkssdHHLDNYTETKTNF  186
             EETQ +LIDDETSKKTQQHSPQDLSNEE+   NHFEDSSKESK SSD  LDN TETKTNF
Sbjct  389   EETQTGLIDDETSKKTQQHSPQDLSNEEATEINHFEDSSKESKESSDPYLDNPTETKTNF  448

Query  187   DGEKSEEITNDSNDQEiikgskkkyiiggivvavliviilFSRSIFHYFIPLEDKSSRFS  246
             D +KSEEITNDSNDQEIIKGSKKKYIIGGIVVAVLIVIILFSRSIFHYF+PLEDKSSRFS
Sbjct  449   DEDKSEEITNDSNDQEIIKGSKKKYIIGGIVVAVLIVIILFSRSIFHYFMPLEDKSSRFS  508

Query  247   KDRNLYVNDEIQIRQEYNRLLKERNEKGNMIDKNLFFNDDPNRTLYNYLNIAEIEDKNPL  306
             KDRNLYVNDEIQIRQEYNRLLKERNEKGNMIDKNLFFNDDPNRTLYNYLNIAEIEDKNPL
Sbjct  509   KDRNLYVNDEIQIRQEYNRLLKERNEKGNMIDKNLFFNDDPNRTLYNYLNIAEIEDKNPL  568

Query  307   RAFYECISNGGNYEEClklikdkklqdqmkktlEAYNDCIKNAKTEEERIKCLDLIKDEN  366
             RAFYECISNGGNYEECLKLIKDKKLQDQMKKTLEAYNDCIKNAKTEEERIKCLDLIKDEN
Sbjct  569   RAFYECISNGGNYEECLKLIKDKKLQDQMKKTLEAYNDCIKNAKTEEERIKCLDLIKDEN  628

Query  367   LKKSLLNQQKVQVALDCLKNAKTDEERNECLKLINDPEIrekfrkelelqkelqeYKDCI  426
             LKKSLLNQQKVQVALDCLKNAKTDEER+ECLKLINDPEIREKFRKELELQKELQEYKDCI
Sbjct  629   LKKSLLNQQKVQVALDCLKNAKTDEERKECLKLINDPEIREKFRKELELQKELQEYKDCI  688

Query  427   KNAKTEAEKNKCLKGLSKEAIERLKQQALDCLKNAKTDEERNECLKNIPQDLQKELLADM  486
             KNAKTEAEKN CLKGLSKEAIERLKQQALDCLKNAKTDEERNECLKNIPQDLQKELLADM
Sbjct  689   KNAKTEAEKNECLKGLSKEAIERLKQQALDCLKNAKTDEERNECLKNIPQDLQKELLADM  748

Query  487   SVKAYKDCVSKARNEEERKACEKLLTPEAKKLLERQALDCLKNAKTEAEKKRCVKDLPKD  546
             SVKAYKDCVSKARNE E++ CEKLLTPEA+K LE+Q LDCLKNAKT+ E+K+C+KDLPKD
Sbjct  749   SVKAYKDCVSKARNEKEKQECEKLLTPEARKKLEQQVLDCLKNAKTDEERKKCLKDLPKD  808

Query  547   LQSDILAKESVKAYRDCVSQARTEAEKKECeklltpeakklleeeakeSVKAYLDCVSQA  606
             LQSDILAKESVKAY+DCVSQA+ EAEKKECEKLLTPEAKKLLEEEAKESVKAYLDCVSQA
Sbjct  809   LQSDILAKESVKAYKDCVSQAKNEAEKKECEKLLTPEAKKLLEEEAKESVKAYLDCVSQA  868

Query  607   ktetekkeceklltPEARKKLEEAKKSVKAYLDCVSQAktetekkeceklltPEAKKLLE  666
             KTE+EKKECEKLLTPEARKKLEEAKKSVKAYLDCVSQAK E EKKECEKLLTPEA+KLLE
Sbjct  869   KTEAEKKECEKLLTPEARKKLEEAKKSVKAYLDCVSQAKNEDEKKECEKLLTPEARKLLE  928

Query  667   QQALDCLKNAKTEAEKKRCVKDLPKDLQKKVLAKES------------------------  702
             QQALDCLKNAKT+ E+K+C+KDLPKDLQKKVLAKES                        
Sbjct  929   QQALDCLKNAKTDEERKKCLKDLPKDLQKKVLAKESVKAYLDCVSQAKTEAEKKECEKLL  988

Query  703   --------------LKAYKDCVSRARNekekkeceklltpeakkl-leeakeslkaYKDC  747
                           +KAYKDCVS+ARNEKEKKECEKLLTPEAKKL  EEAKES+KAY DC
Sbjct  989   TPEARKLLEEAKESIKAYKDCVSKARNEKEKKECEKLLTPEAKKLLEEEAKESVKAYLDC  1048

Query  748   VSQARTEAEKKECeklltpeakklleeeakeSVKAYLDCISQAktetekkeceklltPEA  807
             VSQA+TEAEKKECEKLLTPEAKK LEE  K SVKAYLDC+SQAK E EKKECEKLLTPEA
Sbjct  1049  VSQAKTEAEKKECEKLLTPEAKKKLEEAKK-SVKAYLDCVSQAKNEDEKKECEKLLTPEA  1107

Query  808   RKKLEE-------------------------------AKKSVKAYLDCVSQAktetekke  836
             +K LE+                               AK SVKAY DCVS+A+ E EKKE
Sbjct  1108  KKLLEQQALDCLKNAKTEADKKRCVKDLPKDLQKKVLAKESVKAYKDCVSRARNEKEKKE  1167

Query  837   ceklltPEAKKLLEQQA------LDCLKNAKTEAEKKRCVKDLPKDLQKKVL--AKESLK  888
             CEKLLTPEAKKLLE+        LDC+ +AKTEAEKK C K L  +  KK+L  AKESLK
Sbjct  1168  CEKLLTPEAKKLLEEAKKSVKAYLDCVSQAKTEAEKKECEKLLTPE-AKKLLEEAKESLK  1226

Query  889   AYKDCVSRARNekekkeceklltpeakklleeakeslkaYKDCVSQARNEEERKACEKLL  948
             AYKDCVSRARNEKEKKECEKLLTPEAKKLLE+         DC+ +A+ E ++K C K L
Sbjct  1227  AYKDCVSRARNEKEKKECEKLLTPEAKKLLEQQAL------DCLKNAKTEADKKRCVKDL  1280

Query  949   TPEARKKLEEAKKSVKAYLDCVSRARNekekkeceklltpeakklleeakeslkaYKDCL  1008
               + +KK+  AK SVKAYLDCVSRARNEKEKKECEKLLTPEAKKLLEEAKESLKAYKDCL
Sbjct  1281  PKDLQKKVL-AKESVKAYLDCVSRARNEKEKKECEKLLTPEAKKLLEEAKESLKAYKDCL  1339

Query  1009  SQARNEEERKACEKLLTPEARKLLEQEVKKSVKAYLDCVSRARNEKEKQECEKLLTPEAR  1068
             SQARNEEER+ACEKLLTPEARKLLEQEVKKSVKAYLDCVS+A+ E EK+ECEKLLTPEAR
Sbjct  1340  SQARNEEERRACEKLLTPEARKLLEQEVKKSVKAYLDCVSQAKTEAEKKECEKLLTPEAR  1399

Query  1069  KFLAKQALSCLEKARNEEERKACLKNIPKDLQKDVLAKESLKAYKDCLSQARNEEERKAC  1128
             KFLAKQ L+CLEKA NEEERKACLKN+PKDLQ +VLAKESLKAYKDCLSQARNEEER+AC
Sbjct  1400  KFLAKQVLNCLEKAGNEEERKACLKNLPKDLQENVLAKESLKAYKDCLSQARNEEERRAC  1459

Query  1129  EKLLTPEARKLLEQEVKKSVKAYLDCVSRARNEKEKQECEKLLTPEARKFLAKELQQKDK  1188
             EKLLTPEARKLLEQEVKKSVKAYLDCVSRARNEKEK+ECEKLLTPEARKFLAKELQQKDK
Sbjct  1460  EKLLTPEARKLLEQEVKKSVKAYLDCVSRARNEKEKKECEKLLTPEARKFLAKELQQKDK  1519

Query  1189  AIKDCLKNADPNDRAAIMKCLDGLSDEEKLKYLQEAREKAVLDCLKTARTDEEKRKCQNL  1248
             AIKDCLKNADPNDRAAIMKCLDGLSDEEKLKYLQEAREKAVLDCLKTARTDEEKRKCQNL
Sbjct  1520  AIKDCLKNADPNDRAAIMKCLDGLSDEEKLKYLQEAREKAVLDCLKTARTDEEKRKCQNL  1579

Query  1249  YSDLIQEIQNKRAQSKQNQLSKTERLHQASECLDNLDDPTDQEAIEQCLEGLSDSERALI  1308
             YSDLIQEIQNKR+QSKQNQLSKTERLHQASECLDNLDDPTDQ+AIEQCLEGLSDSERALI
Sbjct  1580  YSDLIQEIQNKRTQSKQNQLSKTERLHQASECLDNLDDPTDQQAIEQCLEGLSDSERALI  1639

Query  1309  LGIKRQADEVDLIYSDLRNRKTFDNMAAKGYPLLPMDFKNGGDIATINATNVDADKIASD  1368
             LGIKRQADEVD IYSDLRNRKTFDNMAAKGYPLLPMDFKNGGDIATINATNVDADKIASD
Sbjct  1640  LGIKRQADEVDRIYSDLRNRKTFDNMAAKGYPLLPMDFKNGGDIATINATNVDADKIASD  1699

Query  1369  NPIYASIEPDITKQYETEKTIkdknleaklakalggnkkdddkekskksTAEARVESNKI  1428
             NPIYASIEPDITKQYETEKTIKDKNLEAKLAKALGGNKKDDDKEKSKKSTAEA+VESNKI
Sbjct  1700  NPIYASIEPDITKQYETEKTIKDKNLEAKLAKALGGNKKDDDKEKSKKSTAEAKVESNKI  1759

Query  1429  DKDVAETAKNISEIALKNKKEKSGEFVDENGNPIddkkktekqdetSPVKQAFIGKSDPT  1488
             DKDVAETAKNISEIALKNKKEK+GEFVDENGNPIDDKKK+EKQDETSPVKQAFIGKSDPT
Sbjct  1760  DKDVAETAKNISEIALKNKKEKNGEFVDENGNPIDDKKKAEKQDETSPVKQAFIGKSDPT  1819

Query  1489  FVLAQYTPIEITLTSKVDATLTGIVSGVVAKDVWNMNGTMILLDKGTKVYGNYQSVKGGT  1548
             FVLAQYTPIEITLTSKVDATLTGIVSGVVAKDVWNMNGTMILLDKGTKVYGNYQSVKGGT
Sbjct  1820  FVLAQYTPIEITLTSKVDATLTGIVSGVVAKDVWNMNGTMILLDKGTKVYGNYQSVKGGT  1879

Query  1549  PIMTRLMIVFTKAITPDGVIIPLANAQAAGMLGEAGVDGYVNNHFMKRIGFAVIASVVNS  1608
             PIMTRLMIVFTKAITPDGVIIPLANAQAAGMLGEAGVDGYVNNHFMKRIGFAVIASVVNS
Sbjct  1880  PIMTRLMIVFTKAITPDGVIIPLANAQAAGMLGEAGVDGYVNNHFMKRIGFAVIASVVNS  1939

Query  1609  FLQTAPIIALDKLIGLGKGRSERTPEFNYALGQAINGSMQSSAQMSNQILGQLMNIPPSF  1668
             FLQTAPIIALDKLIGLGKGRSERTPEFNYALGQAINGSMQSSAQMSNQILGQLMNIPPSF
Sbjct  1940  FLQTAPIIALDKLIGLGKGRSERTPEFNYALGQAINGSMQSSAQMSNQILGQLMNIPPSF  1999

Query  1669  YKNEGDSIKILTMDDIDFSGVYDVKITNKSVVDEIIKQSTKTLSREHEEITTSPKGGN  1726
             YKNEGDSIKILTMDDIDFSGVYDVKITNKSVVDEIIKQSTKTLSREHEEITTSPKGGN
Sbjct  2000  YKNEGDSIKILTMDDIDFSGVYDVKITNKSVVDEIIKQSTKTLSREHEEITTSPKGGN  2057


 Score =  174 bits (644),  Expect = 4e-44, Method: Compositional matrix adjust.
 Identities = 170/199 (86%), Positives = 178/199 (90%), Gaps = 2/199 (1%)

Query  1    MNEENDKLETSKKTQQHSPQDLSNEETIKANHFedsskeskkssdHHLDNSTETKTNFDE  60
            MNEENDKLETSKKTQQHSPQDLSNEE+   NHFEDSSKESK SSDHHL+N+TETKTNFD 
Sbjct  1    MNEENDKLETSKKTQQHSPQDLSNEEATEINHFEDSSKESKESSDHHLNNPTETKTNFDG  60

Query  61   YKSEETQTQMDSGGNETSESSN--LADKLFKKARKLVDNKRPFTQQKNLdeeiqepneed  118
             KSEETQTQMDSGG+ETSESSN  LADKLFKKARKLVDNKRPFTQQKNLDEE QE NEED
Sbjct  61   DKSEETQTQMDSGGDETSESSNGSLADKLFKKARKLVDNKRPFTQQKNLDEETQELNEED  120

Query  119  dqennGYQEETQMDLIDDETSKKTQQHSPQDLSNEETIKANHFedsskeskkssdHHLDN  178
            DQENNGYQEETQ +LIDDETSKKTQQHSPQDLSNEE+   NHFEDSSKESK SSD  LDN
Sbjct  121  DQENNGYQEETQTGLIDDETSKKTQQHSPQDLSNEEATEINHFEDSSKESKESSDPYLDN  180

Query  179  YTETKTNFDGEKSEEITND  197
             TETKTNFDG+KSEE   +
Sbjct  181  PTETKTNFDGDKSEETQTQ  199


 Score =  158 bits (585),  Expect = 2e-39, Method: Compositional matrix adjust.
 Identities = 161/191 (85%), Positives = 168/191 (88%), Gaps = 2/191 (1%)

Query  9    ETSKKTQQHSPQDLSNEETIKANHFedsskeskkssdHHLDNSTETKTNFDEYKSEETQT  68
            ETSKKTQQHSPQDLSNEE+   NHFEDSSKESK SSD  LDN+TETKTNFD  KSEETQT
Sbjct  139  ETSKKTQQHSPQDLSNEEATEINHFEDSSKESKESSDPYLDNPTETKTNFDGDKSEETQT  198

Query  69   QMDSGGNETSESSN--LADKLFKKARKLVDNKRPFTQQKNLdeeiqepneeddqennGYQ  126
            QMDSGG+ETSESSN  LADKLFKKARKLVDNKRPFTQQKNLDEE QE NEEDDQENNGYQ
Sbjct  199  QMDSGGDETSESSNGSLADKLFKKARKLVDNKRPFTQQKNLDEETQELNEEDDQENNGYQ  258

Query  127  EETQMDLIDDETSKKTQQHSPQDLSNEETIKANHFedsskeskkssdHHLDNYTETKTNF  186
            EETQ +LIDDETSKKTQQHSPQDLSNEE+   NHFEDSSKESK SSD  LDN TETKTNF
Sbjct  259  EETQTGLIDDETSKKTQQHSPQDLSNEEATEINHFEDSSKESKESSDPYLDNPTETKTNF  318

Query  187  DGEKSEEITND  197
            DG+KSEE   +
Sbjct  319  DGDKSEETQTQ  329