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PAthogenisity Island DataBase (PAI DB)

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Homologs of cagY gene of JQ685133

protein-level

Hit (GenBank Accn)

Product

Source Genome

Eval.

Ident.(%)

1) cagY
( YP_003728737.1 )

cag pathogenicity island protein Y

NC_014256
(Helicobacter pylori B8)

0.0

2) HPSH_04285
( YP_001910322.1 )

cag pathogenicity island protein CagY

NC_010698
(Helicobacter pylori Shi470)

0.0

3) HPSH112_04410
( YP_006227576.1 )

cag pathogenicity island protein (cag7)

NC_017741
(Helicobacter pylori Shi112)

0.0

4) K748_07945
( YP_008337443.1 )

hypothetical protein

NC_021882
(Helicobacter pylori UM298)

0.0

5) K749_01335
( YP_007980064.1 )

hypothetical protein

NC_021216
(Helicobacter pylori UM299)

0.0

6) HPSH169_02700
( YP_006225732.1 )

cag pathogenicity island protein (cag7)

NC_017740
(Helicobacter pylori Shi169)

0.0

7) HPSH417_02515
( YP_006224150.1 )

cag pathogenicity island protein CagY

NC_017739
(Helicobacter pylori Shi417)

0.0

8) HPKB_0815
( YP_005762323.1 )

conjugation TrbI family protein

NC_017354
(Helicobacter pylori 52)

0.0

9) HPSJM_02650
( YP_003928443.1 )

cag island protein

NC_014560
(Helicobacter pylori SJM180)

0.0

10) K750_04135
( YP_007982183.1 )

hypothetical protein

NC_021217
(Helicobacter pylori UM037)

0.0

11) HPSAT_04140
( YP_005768472.1 )

cag pathogenicity island protein (cagY, cag7)

NC_017359
(Helicobacter pylori Sat464)

0.0

12) cagY
( YP_005777271.1 )

cag pathogenicity island protein Y VirB10-like protein

NC_017367
(Helicobacter pylori F57)

0.0

13) cag7
( YP_007538436.1 )

cag pathogenicity island protein

NC_020509
(Helicobacter pylori OK310)

0.0

14) HPELS_03975
( YP_005424915.1 )

cag pathogenicity island protein (cag7)

NC_017063
(Helicobacter pylori ELS37)

0.0

• Sequence Alignments

1) cagY in NC_014256


> JQ685133|1|G1|442739051|AGC69785.1|Helicobacter_pylori_J166_isolate_31063-2.8/rOut1|+|1..5853|cagY|-|cag 
pathogenicity island 
protein Y
Length=1950

 Score = 2022 bits (7684),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 1750/1851 (95%), Positives = 1756/1851 (95%), Gaps = 77/1851 (4%)

Query  9     ETSKKIQQHSPQDLSNEEATEANHFedsskeskessdHHLNNPTETKTNFDGDKSEETQT  68
             ETSKK QQHSPQDLSNEEATE NHFEDSSKESKESSD  L+NPTETKTNFDGDKSEETQT
Sbjct  139   ETSKKTQQHSPQDLSNEEATEINHFEDSSKESKESSDPYLDNPTETKTNFDGDKSEETQT  198

Query  69    QMDSGGDETSESSNGSLADKLFKKARKLVDNKRLFTQQKnldeetqelneeddqennGYQ  128
             QMDSGGDETSESSNGSLADKLFKKARKLVDNKR FTQQKNLDEETQELNEEDDQENNGYQ
Sbjct  199   QMDSGGDETSESSNGSLADKLFKKARKLVDNKRPFTQQKNLDEETQELNEEDDQENNGYQ  258

Query  129   EETQTGLIDDETSKKTQQHSPQDLSNEEATEINHFedsskeskessdPYLDNPTETKTNF  188
             EETQTGLIDDETSKKTQQHSPQDLSNEEATEINHFEDSSKESKESSDPYLDNPTETKTNF
Sbjct  259   EETQTGLIDDETSKKTQQHSPQDLSNEEATEINHFEDSSKESKESSDPYLDNPTETKTNF  318

Query  189   DEDKSEETQTQMDSGGDETSESSNGSLADKLFKKARKLVDNKRLFTQQKnldeetqelne  248
             D DKSEETQTQMDSGGDETSESSNGSLADKLFKKARKLVDNKR FTQQKNLDEETQELNE
Sbjct  319   DGDKSEETQTQMDSGGDETSESSNGSLADKLFKKARKLVDNKRPFTQQKNLDEETQELNE  378

Query  249   eddqennGYQEETQTGLIDDETSKKTQQHSPQDLSNEEATEINHFedsskeskessdPYL  308
             EDDQENNGYQEETQTGLIDDETSKKTQQHSPQDLSNEEATEINHFEDSSKESKESSDPYL
Sbjct  379   EDDQENNGYQEETQTGLIDDETSKKTQQHSPQDLSNEEATEINHFEDSSKESKESSDPYL  438

Query  309   DNPTETKTNFDEDKSEEITNDSNDQEiikgskkkyiiggivvavliviilFSRSIFHYFM  368
             DNPTETKTNFDEDKSEEITNDSNDQEIIKGSKKKYIIGGIVVAVLIVIILFSRSIFHYFM
Sbjct  439   DNPTETKTNFDEDKSEEITNDSNDQEIIKGSKKKYIIGGIVVAVLIVIILFSRSIFHYFM  498

Query  369   PLEDKSSRFSKDRNLYVNDEIQIRQEYNRLLKERNEKGNMIDKNLFFNDDPNRTLYNYLN  428
             PLEDKSSRFSKDRNLYVNDEIQIRQEYNRLLKERNEKGNMIDKNLFFNDDPNRTLYNYLN
Sbjct  499   PLEDKSSRFSKDRNLYVNDEIQIRQEYNRLLKERNEKGNMIDKNLFFNDDPNRTLYNYLN  558

Query  429   IAEIEDKNPLRAFYECISNGGNYEEClklikdkklqdqmkktlEAYNDCIKNAKTEEERI  488
             IAEIEDKNPLRAFYECISNGGNYEECLKLIKDKKLQDQMKKTLEAYNDCIKNAKTEEERI
Sbjct  559   IAEIEDKNPLRAFYECISNGGNYEECLKLIKDKKLQDQMKKTLEAYNDCIKNAKTEEERI  618

Query  489   KCLDLIKDENLKKSLLNQQKVQVALDCLKNAKTDEERKECLKLINDPEIrekfrkelelq  548
             KCLDLIKDENLKKSLLNQQKVQVALDCLKNAKTDEERKECLKLINDPEIREKFRKELELQ
Sbjct  619   KCLDLIKDENLKKSLLNQQKVQVALDCLKNAKTDEERKECLKLINDPEIREKFRKELELQ  678

Query  549   kelqeYKDCIKNAKTEAEKNECLKGLSKEAIERLKQQALDCLKNAKTDEERNECLKNIPQ  608
             KELQEYKDCIKNAKTEAEKNECLKGLSKEAIERLKQQALDCLKNAKTDEERNECLKNIPQ
Sbjct  679   KELQEYKDCIKNAKTEAEKNECLKGLSKEAIERLKQQALDCLKNAKTDEERNECLKNIPQ  738

Query  609   DLQKELLADMSVKAYKDCVSKARNEKEKQECEKLLTPEARKKLEQQVLDCLKNAKTDEER  668
             DLQKELLADMSVKAYKDCVSKARNEKEKQECEKLLTPEARKKLEQQVLDCLKNAKTDEER
Sbjct  739   DLQKELLADMSVKAYKDCVSKARNEKEKQECEKLLTPEARKKLEQQVLDCLKNAKTDEER  798

Query  669   KKCLKDLPKDLQSDILAKESVKAYKDCVSQakneaekkeceklltpeakklleeeakeSV  728
             KKCLKDLPKDLQSDILAKES                                       V
Sbjct  799   KKCLKDLPKDLQSDILAKES---------------------------------------V  819

Query  729   KAYLDCVSQakteaekkeceklltpeakklleeeakeSVKAYLDCVSQakteaekkecek  788
             KAY DCVSQAK EAEKKECEKLLTPEAKKLLEEEAKESVKAYLDCVSQAKTEAEKKECEK
Sbjct  820   KAYKDCVSQAKNEAEKKECEKLLTPEAKKLLEEEAKESVKAYLDCVSQAKTEAEKKECEK  879

Query  789   lltPEARKKLEEAKKSVKAYKDCVSQAKNEDEKKECEKLLTPEARKLLEQQALDCLKNAK  848
             LLTPEARKKLEEAKKSVKAY DCVSQAKNEDEKKECEKLLTPEARKLLEQQALDCLKNAK
Sbjct  880   LLTPEARKKLEEAKKSVKAYLDCVSQAKNEDEKKECEKLLTPEARKLLEQQALDCLKNAK  939

Query  849   TDEERKKCLKDLPKDLQKKVLAKESVKAYLDCVSQakneaekkecekLLTPEARKLLEEA  908
             TDEERKKCLKDLPKDLQKKVLAKESVKAYLDCVSQAK EAEKKECEKLLTPEARKLLEEA
Sbjct  940   TDEERKKCLKDLPKDLQKKVLAKESVKAYLDCVSQAKTEAEKKECEKLLTPEARKLLEEA  999

Query  909   KESIKAYKDCVSKARNekekkeceklltpeakklleeeakeSVKAYLDCVSQakteaekk  968
             KESIKAYKDCVSKARNEKEKKECEKLLTPEAKKLLEEEAKESVKAYLDCVSQAKTEAEKK
Sbjct  1000  KESIKAYKDCVSKARNEKEKKECEKLLTPEAKKLLEEEAKESVKAYLDCVSQAKTEAEKK  1059

Query  969   eceklltpeakklleeakeslkaYKDCVSRARNekekkecekLLTPEAKKLLEQQALDCL  1028
             ECEKLLTPEAKK LEEAK S+KAY DCVS+A+NE EKKECEKLLTPEAKKLLEQQALDCL
Sbjct  1060  ECEKLLTPEAKKKLEEAKKSVKAYLDCVSQAKNEDEKKECEKLLTPEAKKLLEQQALDCL  1119

Query  1029  KNAKTEADKKRCVKDLPKDLQKKVLAKESVK-----------------------------  1059
             KNAKTEADKKRCVKDLPKDLQKKVLAKESVK                             
Sbjct  1120  KNAKTEADKKRCVKDLPKDLQKKVLAKESVKAYKDCVSRARNEKEKKECEKLLTPEAKKL  1179

Query  1060  ---------AYKDCVSRARNekekkeceklltpeakklleeakeslkaYKDCLSQARNEE  1110
                      AY DCVS+A+ E EKKECEKLLTPEAKKLLEEAKESLKAYKDCLSQARNEE
Sbjct  1180  LEEAKKSVKAYLDCVSQAKTEAEKKECEKLLTPEAKKLLEEAKESLKAYKDCLSQARNEE  1239

Query  1111  ERRACEKLLTPEARKLLEQEVKKSVKAYLDCVSQakteaekkeceklltPEARKFLAKQV  1170
             ERRACEKLLTPEARKLLEQEVKKSVKAYLDCVSQAKTEAEKKECEKLLTPEARKFLAKQV
Sbjct  1240  ERRACEKLLTPEARKLLEQEVKKSVKAYLDCVSQAKTEAEKKECEKLLTPEARKFLAKQV  1299

Query  1171  LNCLEKAGNEEERKACLKNLPKDLQENVLAKESLKAYKDCLSQARNEEERRACEKLLTPE  1230
             LNCLEKAGNEEERKACLKNLPKDLQENVLAKESLKAYKDCLSQARNEEERRACEKLLTPE
Sbjct  1300  LNCLEKAGNEEERKACLKNLPKDLQENVLAKESLKAYKDCLSQARNEEERRACEKLLTPE  1359

Query  1231  ARKLLEQEVKKSVKAYLDCVSRARNekekkecekLLTPEARKFLAKELQQKDKAIKDCLK  1290
             ARKLLEQEVKKSVKAYLDCVSRARNEKEKKECEKLLTPEARKFLAKELQQKDKAIKDCLK
Sbjct  1360  ARKLLEQEVKKSVKAYLDCVSRARNEKEKKECEKLLTPEARKFLAKELQQKDKAIKDCLK  1419

Query  1291  NADPNDRAAIMKCLDGLSDEEKLKYLQEAREKAVLDCLKTARTDEEKRKCQNLYSDLIQE  1350
             NADPNDRAAIMKCLDGLSDEEKLKYLQEAREKAVLDCLKTARTDEEKRKCQNLYSDLIQE
Sbjct  1420  NADPNDRAAIMKCLDGLSDEEKLKYLQEAREKAVLDCLKTARTDEEKRKCQNLYSDLIQE  1479

Query  1351  IQNKRTQSKQNQLSKTERLHQASECLDNLDDPTDQQAIEQCLEGLSDSERALILGIKRQA  1410
             IQNKRTQSKQNQLSKTERLHQASECLDNLDDPTDQQAIEQCLEGLSDSERALILGIKRQA
Sbjct  1480  IQNKRTQSKQNQLSKTERLHQASECLDNLDDPTDQQAIEQCLEGLSDSERALILGIKRQA  1539

Query  1411  DEVDRIYSDLRNRKTFDNMAAKGYPLLPMDFKNGGDIATINATNVDADKIASDNPIYASI  1470
             DEVDRIYSDLRNRKTFDNMAAKGYPLLPMDFKNGGDIATINATNVDADKIASDNPIYASI
Sbjct  1540  DEVDRIYSDLRNRKTFDNMAAKGYPLLPMDFKNGGDIATINATNVDADKIASDNPIYASI  1599

Query  1471  EPDITKQYETEKTIkdknleaklakalggnkkdddkekskkstaeakvesNKIDKDVAET  1530
             EPDITKQYETEKTIKDKNLEAKLAKALGGNKKDDDKEKSKKSTAEAKVESNKIDKDVAET
Sbjct  1600  EPDITKQYETEKTIKDKNLEAKLAKALGGNKKDDDKEKSKKSTAEAKVESNKIDKDVAET  1659

Query  1531  AKNISEIALKNKKEKNGEFVDENGNPIDDKKKAEKQDETSPVKQAFIGKSDPTFVLAQYT  1590
             AKNISEIALKNKKEKNGEFVDENGNPIDDKKKAEKQDETSPVKQAFIGKSDPTFVLAQYT
Sbjct  1660  AKNISEIALKNKKEKNGEFVDENGNPIDDKKKAEKQDETSPVKQAFIGKSDPTFVLAQYT  1719

Query  1591  PIEITLTSKVDATLTGIVSGVVAKDVWNMNGTMILLDKGTKVYGNYQSVKGGTPIMTRLM  1650
             PIEITLTSKVDATLTGIVSGVVAKDVWNMNGTMILLDKGTKVYGNYQSVKGGTPIMTRLM
Sbjct  1720  PIEITLTSKVDATLTGIVSGVVAKDVWNMNGTMILLDKGTKVYGNYQSVKGGTPIMTRLM  1779

Query  1651  IVFTKAITPDGVIIPLANAQAAGMLGEAGVDGYVNNHFMKRIGFAVIASVVNSFLQTAPI  1710
             IVFTKAITPDGVIIPLANAQAAGMLGEAGVDGYVNNHFMKRIGFAVIASVVNSFLQTAPI
Sbjct  1780  IVFTKAITPDGVIIPLANAQAAGMLGEAGVDGYVNNHFMKRIGFAVIASVVNSFLQTAPI  1839

Query  1711  IALDKLIGLGKGRSERTPEFNYALGQAINGSMQSSAQMSNQILGQLMNIPPSFYKNEGDS  1770
             IALDKLIGLGKGRSERTPEFNYALGQAINGSMQSSAQMSNQILGQLMNIPPSFYKNEGDS
Sbjct  1840  IALDKLIGLGKGRSERTPEFNYALGQAINGSMQSSAQMSNQILGQLMNIPPSFYKNEGDS  1899

Query  1771  IKILTMDDIDFSGVYDVKITNKSVVDEIIKQSTKTLSREHEEITTSPKGGN  1821
             IKILTMDDIDFSGVYDVKITNKSVVDEIIKQSTKTLSREHEEITTSPKGGN
Sbjct  1900  IKILTMDDIDFSGVYDVKITNKSVVDEIIKQSTKTLSREHEEITTSPKGGN  1950


 Score =  324 bits (1215),  Expect = 3e-89, Method: Compositional matrix adjust.
 Identities = 316/326 (97%), Positives = 317/326 (98%), Gaps = 0/326 (0%)

Query  1    MNEENDKLETSKKIQQHSPQDLSNEEATEANHFedsskeskessdHHLNNPTETKTNFDG  60
            MNEENDKLETSKK QQHSPQDLSNEEATE NHFEDSSKESKESSD  L+NPTETKTNFDG
Sbjct  1    MNEENDKLETSKKTQQHSPQDLSNEEATEINHFEDSSKESKESSDPYLDNPTETKTNFDG  60

Query  61   DKSEETQTQMDSGGDETSESSNGSLADKLFKKARKLVDNKRLFTQQKnldeetqelneed  120
            DKSEETQTQMDSGGDETSESSNGSLADKLFKKARKLVDNKR FTQQKNLDEETQELNEED
Sbjct  61   DKSEETQTQMDSGGDETSESSNGSLADKLFKKARKLVDNKRPFTQQKNLDEETQELNEED  120

Query  121  dqennGYQEETQTGLIDDETSKKTQQHSPQDLSNEEATEINHFedsskeskessdPYLDN  180
            DQENNGYQEETQTGLIDDETSKKTQQHSPQDLSNEEATEINHFEDSSKESKESSDPYLDN
Sbjct  121  DQENNGYQEETQTGLIDDETSKKTQQHSPQDLSNEEATEINHFEDSSKESKESSDPYLDN  180

Query  181  PTETKTNFDEDKSEETQTQMDSGGDETSESSNGSLADKLFKKARKLVDNKRLFTQQKnld  240
            PTETKTNFD DKSEETQTQMDSGGDETSESSNGSLADKLFKKARKLVDNKR FTQQKNLD
Sbjct  181  PTETKTNFDGDKSEETQTQMDSGGDETSESSNGSLADKLFKKARKLVDNKRPFTQQKNLD  240

Query  241  eetqelneeddqennGYQEETQTGLIDDETSKKTQQHSPQDLSNEEATEINHFedsskes  300
            EETQELNEEDDQENNGYQEETQTGLIDDETSKKTQQHSPQDLSNEEATEINHFEDSSKES
Sbjct  241  EETQELNEEDDQENNGYQEETQTGLIDDETSKKTQQHSPQDLSNEEATEINHFEDSSKES  300

Query  301  kessdPYLDNPTETKTNFDEDKSEEI  326
            KESSDPYLDNPTETKTNFD DKSEE 
Sbjct  301  KESSDPYLDNPTETKTNFDGDKSEET  326

2) HPSH_04285 in NC_010698


> JQ685133|1|G1|442739051|AGC69785.1|Helicobacter_pylori_J166_isolate_31063-2.8/rOut1|+|1..5853|cagY|-|cag 
pathogenicity island 
protein Y
Length=1950

 Score = 2005 bits (7616),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 1707/1850 (93%), Positives = 1762/1850 (96%), Gaps = 42/1850 (2%)

Query  9     ETSKKTQQHSPQDLSNEETIKANHFEDsskeskessNHHLDNSTETKTNFDEYKSEETQT  68
             ETSKKTQQHSPQDLSNEE+   NHFEDSSKESKESS+  LDN+TETKTNFD  KSEETQT
Sbjct  139   ETSKKTQQHSPQDLSNEEATEINHFEDSSKESKESSDPYLDNPTETKTNFDGDKSEETQT  198

Query  69    QMDSGGNETSESSN--LADKLFKKARKLVDNKRPFTQQKNLdeeiqepneeddqennGYQ  126
             QMDSGG+ETSESSN  LADKLFKKARKLVDNKRPFTQQKNLDEE QE NEEDDQENNGYQ
Sbjct  199   QMDSGGDETSESSNGSLADKLFKKARKLVDNKRPFTQQKNLDEETQELNEEDDQENNGYQ  258

Query  127   EEIQMDLIDDETSKKTQQHSPQDLSNEETIKANHFedsseeskensdHHLDNSTETKTNF  186
             EE Q +LIDDETSKKTQQHSPQDLSNEE+   NHFEDSS ESKE+SD  LDN+TETKTNF
Sbjct  259   EETQTGLIDDETSKKTQQHSPQDLSNEEATEINHFEDSSKESKESSDPYLDNPTETKTNF  318

Query  187   DGEKSEETQTQMDSGGNETSESSN--LADKLFKKARKLVDNKRPFTQQKNLdeeiqepne  244
             DG+KSEETQTQMDSGG+ETSESSN  LADKLFKKARKLVDNKRPFTQQKNLDEE QE NE
Sbjct  319   DGDKSEETQTQMDSGGDETSESSNGSLADKLFKKARKLVDNKRPFTQQKNLDEETQELNE  378

Query  245   eddqennGYQEEIQMDLIDDETSKKTQQHSPQDLSNEETIKANHFedsskeskensdHHL  304
             EDDQENNGYQEE Q +LIDDETSKKTQQHSPQDLSNEE+   NHFEDSSKESKE+SD  L
Sbjct  379   EDDQENNGYQEETQTGLIDDETSKKTQQHSPQDLSNEEATEINHFEDSSKESKESSDPYL  438

Query  305   DNSTETKTNFDGEKSEEITNDSNDQEiikgskkkyiiggivvavliviilFSRSIFHYFI  364
             DN+TETKTNFD +KSEEITNDSNDQEIIKGSKKKYIIGGIVVAVLIVIILFSRSIFHYF+
Sbjct  439   DNPTETKTNFDEDKSEEITNDSNDQEIIKGSKKKYIIGGIVVAVLIVIILFSRSIFHYFM  498

Query  365   PLEDKSSRFSKDRNLYVNDEIQIRQEYNRLLKERNEKGNMIDKNLFFNDDPNRTLYNYLN  424
             PLEDKSSRFSKDRNLYVNDEIQIRQEYNRLLKERNEKGNMIDKNLFFNDDPNRTLYNYLN
Sbjct  499   PLEDKSSRFSKDRNLYVNDEIQIRQEYNRLLKERNEKGNMIDKNLFFNDDPNRTLYNYLN  558

Query  425   IAEIEDKNPLRAFYECISNGGNYEEClklikdkklqdqmkktlEAYNDCIKNAKTEEERI  484
             IAEIEDKNPLRAFYECISNGGNYEECLKLIKDKKLQDQMKKTLEAYNDCIKNAKTEEERI
Sbjct  559   IAEIEDKNPLRAFYECISNGGNYEECLKLIKDKKLQDQMKKTLEAYNDCIKNAKTEEERI  618

Query  485   KCLDLIKDENLKKSLLNQQKVQVALDCLKNAKTDEERNECLKLINDPEIrekfrkelelq  544
             KCLDLIKDENLKKSLLNQQKVQVALDCLKNAKTDEER+ECLKLINDPEIREKFRKELELQ
Sbjct  619   KCLDLIKDENLKKSLLNQQKVQVALDCLKNAKTDEERKECLKLINDPEIREKFRKELELQ  678

Query  545   kelqeYKDCIKNAKTEAEKNECLKGLSKEAIERLKQQALDCLKNAKTDEERKKCLKNIPQ  604
             KELQEYKDCIKNAKTEAEKNECLKGLSKEAIERLKQQALDCLKNAKTDEER+ CLKNIPQ
Sbjct  679   KELQEYKDCIKNAKTEAEKNECLKGLSKEAIERLKQQALDCLKNAKTDEERNECLKNIPQ  738

Query  605   DLQKELLADMSVKAYKDCVSKARNekekkecekLLTPEAKKKLEQQVLDCLKNAKTDEER  664
             DLQKELLADMSVKAYKDCVSKARNEKEK+ECEKLLTPEA+KKLEQQVLDCLKNAKTDEER
Sbjct  739   DLQKELLADMSVKAYKDCVSKARNEKEKQECEKLLTPEARKKLEQQVLDCLKNAKTDEER  798

Query  665   KKCLKDLPKDLQSDILAKESVKAYKDCVSQARTEAEKKECeklltpeakklleeeakeSV  724
             KKCLKDLPKDLQSDILAKESVKAYKDCVSQA+ EAEKKECEKLLTPEAKKLLEEEAKESV
Sbjct  799   KKCLKDLPKDLQSDILAKESVKAYKDCVSQAKNEAEKKECEKLLTPEAKKLLEEEAKESV  858

Query  725   KAYLDCVSQakteaekkeceklltpeakkkleeakksvkaYLDCVSQakteaekkecekl  784
             KAYLDCVSQAKTEAEKKECEKLLTPEA+KKLEEAKKSVKAYLDCVSQAK E EKKECEKL
Sbjct  859   KAYLDCVSQAKTEAEKKECEKLLTPEARKKLEEAKKSVKAYLDCVSQAKNEDEKKECEKL  918

Query  785   ltPEARKLLEQQALDCLKNAKTEAEKKRCVKDLPKDLQKKVLAKESVKAYLDCVSQakte  844
             LTPEARKLLEQQALDCLKNAKT+ E+K+C+KDLPKDLQKKVLAKESVKAYLDCVSQAKTE
Sbjct  919   LTPEARKLLEQQALDCLKNAKTDEERKKCLKDLPKDLQKKVLAKESVKAYLDCVSQAKTE  978

Query  845   aekkeceklltpeakklleeakeslkaYKDCVSQARTEAEKKECeklltpeakklleeea  904
             AEKKECEKLLTPEA+KLLEEAKES+KAYKDCVS+AR E EKKECEKLLTPEAKKLLEEEA
Sbjct  979   AEKKECEKLLTPEARKLLEEAKESIKAYKDCVSKARNEKEKKECEKLLTPEAKKLLEEEA  1038

Query  905   keSVKAYLDCVSRARNEKEKQECEKLLTPEARKKLEEAKKSVKAYLDCVSQakteaekke  964
             KESVKAYLDCVS+A+ E EK+ECEKLLTPEA+KKLEEAKKSVKAYLDCVSQAK E EKKE
Sbjct  1039  KESVKAYLDCVSQAKTEAEKKECEKLLTPEAKKKLEEAKKSVKAYLDCVSQAKNEDEKKE  1098

Query  965   ceklltPEAKKLLEQQALDCLKNAKTEAEKKRCVKDLPKDLQKKVLAKESLKAYKDCVSR  1024
             CEKLLTPEAKKLLEQQALDCLKNAKTEA+KKRCVKDLPKDLQKKVLAKES+KA       
Sbjct  1099  CEKLLTPEAKKLLEQQALDCLKNAKTEADKKRCVKDLPKDLQKKVLAKESVKA-------  1151

Query  1025  ARNekekkeceklltpeakklleeakeslkaYKDCVSRARNekekkecekLLTPEARKLL  1084
                                            YKDCVSRARNEKEKKECEKLLTPEA+KLL
Sbjct  1152  -------------------------------YKDCVSRARNEKEKKECEKLLTPEAKKLL  1180

Query  1085  EEAKKSVKAYLDCVSRARNekekkecekLLTPEARKLLEEAKESLKAYKDCLSQARNEEE  1144
             EEAKKSVKAYLDCVS+A+ E EKKECEKLLTPEA+KLLEEAKESLKAYKDCLSQARNEEE
Sbjct  1181  EEAKKSVKAYLDCVSQAKTEAEKKECEKLLTPEAKKLLEEAKESLKAYKDCLSQARNEEE  1240

Query  1145  RKACEKLLTPEARKLLEQEVKKSVKAYLDCVSRARNEKEKQECEKLLTPEARKFLAKQAL  1204
             R+ACEKLLTPEARKLLEQEVKKSVKAYLDCVS+A+ E EK+ECEKLLTPEARKFLAKQ L
Sbjct  1241  RRACEKLLTPEARKLLEQEVKKSVKAYLDCVSQAKTEAEKKECEKLLTPEARKFLAKQVL  1300

Query  1205  SCLEKARNEEERKACLKNIPKDLQKNVLAKESLKAYKDCLSQARNEEERKACEKLLTPEA  1264
             +CLEKA NEEERKACLKN+PKDLQ NVLAKESLKAYKDCLSQARNEEER+ACEKLLTPEA
Sbjct  1301  NCLEKAGNEEERKACLKNLPKDLQENVLAKESLKAYKDCLSQARNEEERRACEKLLTPEA  1360

Query  1265  RKLLEQEVKNSVKAYLDCVSRARNEKEKQECEKLLTPEARKFLAKELQQKDKAIKDCLKN  1324
             RKLLEQEVK+SVKAYLDCVSRARNEKEK+ECEKLLTPEARKFLAKELQQKDKAIKDCLKN
Sbjct  1361  RKLLEQEVKKSVKAYLDCVSRARNEKEKKECEKLLTPEARKFLAKELQQKDKAIKDCLKN  1420

Query  1325  ADPNDRAAIMKCLDGLSDEEKLKYLQEAREKAVLDCLKTAKTDEEKRKCQNLYSDLIQEI  1384
             ADPNDRAAIMKCLDGLSDEEKLKYLQEAREKAVLDCLKTA+TDEEKRKCQNLYSDLIQEI
Sbjct  1421  ADPNDRAAIMKCLDGLSDEEKLKYLQEAREKAVLDCLKTARTDEEKRKCQNLYSDLIQEI  1480

Query  1385  QNKRAQSKQNQLSKTERLHQASECLDNLDDPTDQEAIEQCLEGLSDSERALILGIKRQAD  1444
             QNKR+QSKQNQLSKTERLHQASECLDNLDDPTDQ+AIEQCLEGLSDSERALILGIKRQAD
Sbjct  1481  QNKRTQSKQNQLSKTERLHQASECLDNLDDPTDQQAIEQCLEGLSDSERALILGIKRQAD  1540

Query  1445  EVDLIYSDLRNRKTFDNMAAKGYPLLPMDFKNGGDIATINATNVDADKIASDNPIYASIE  1504
             EVD IYSDLRNRKTFDNMAAKGYPLLPMDFKNGGDIATINATNVDADKIASDNPIYASIE
Sbjct  1541  EVDRIYSDLRNRKTFDNMAAKGYPLLPMDFKNGGDIATINATNVDADKIASDNPIYASIE  1600

Query  1505  PDITKQYETEKTIkdknleaklakalggnkkdddkekskksTAEARVESNKIDKDVAETA  1564
             PDITKQYETEKTIKDKNLEAKLAKALGGNKKDDDKEKSKKSTAEA+VESNKIDKDVAETA
Sbjct  1601  PDITKQYETEKTIKDKNLEAKLAKALGGNKKDDDKEKSKKSTAEAKVESNKIDKDVAETA  1660

Query  1565  KNISEIALKNKKEKSGEFVDENGNPIddkkktekqdetSPVKQAFIGKSDPTFVLAQYTP  1624
             KNISEIALKNKKEK+GEFVDENGNPIDDKKK+EKQDETSPVKQAFIGKSDPTFVLAQYTP
Sbjct  1661  KNISEIALKNKKEKNGEFVDENGNPIDDKKKAEKQDETSPVKQAFIGKSDPTFVLAQYTP  1720

Query  1625  IEITLTSKVDATLTGIVSGVVAKDVWNMNGTMILLDKGTKVYGNYQSVKGGTPIMTRLMI  1684
             IEITLTSKVDATLTGIVSGVVAKDVWNMNGTMILLDKGTKVYGNYQSVKGGTPIMTRLMI
Sbjct  1721  IEITLTSKVDATLTGIVSGVVAKDVWNMNGTMILLDKGTKVYGNYQSVKGGTPIMTRLMI  1780

Query  1685  VFTKAITPDGVIIPLANAQAAGMLGEAGVDGYVNNHFMKRIGFAVVASVVNSFLQTAPII  1744
             VFTKAITPDGVIIPLANAQAAGMLGEAGVDGYVNNHFMKRIGFAV+ASVVNSFLQTAPII
Sbjct  1781  VFTKAITPDGVIIPLANAQAAGMLGEAGVDGYVNNHFMKRIGFAVIASVVNSFLQTAPII  1840

Query  1745  ALDKLIGLGKGRSERTPEFNYALGQAINGSMQSSAQMSNQILGQLMNIPPSFYKNEGDSI  1804
             ALDKLIGLGKGRSERTPEFNYALGQAINGSMQSSAQMSNQILGQLMNIPPSFYKNEGDSI
Sbjct  1841  ALDKLIGLGKGRSERTPEFNYALGQAINGSMQSSAQMSNQILGQLMNIPPSFYKNEGDSI  1900

Query  1805  KILTMDDIDFSGVYDVKITNKSVVDEIIKQSTKTLSREHEEITTSPKGGN  1854
             KILTMDDIDFSGVYDVKITNKSVVDEIIKQSTKTLSREHEEITTSPKGGN
Sbjct  1901  KILTMDDIDFSGVYDVKITNKSVVDEIIKQSTKTLSREHEEITTSPKGGN  1950


 Score =  284 bits (1064),  Expect = 3e-77, Method: Compositional matrix adjust.
 Identities = 280/326 (86%), Positives = 295/326 (91%), Gaps = 4/326 (1%)

Query  1    MNEENDKLETSKKTQQHSPQDLSNEETIKANHFEDsskeskessNHHLDNSTETKTNFDE  60
            MNEENDKLETSKKTQQHSPQDLSNEE+   NHFEDSSKESKESS+  LDN+TETKTNFD 
Sbjct  1    MNEENDKLETSKKTQQHSPQDLSNEEATEINHFEDSSKESKESSDPYLDNPTETKTNFDG  60

Query  61   YKSEETQTQMDSGGNETSESSN--LADKLFKKARKLVDNKRPFTQQKNLdeeiqepneed  118
             KSEETQTQMDSGG+ETSESSN  LADKLFKKARKLVDNKRPFTQQKNLDEE QE NEED
Sbjct  61   DKSEETQTQMDSGGDETSESSNGSLADKLFKKARKLVDNKRPFTQQKNLDEETQELNEED  120

Query  119  dqennGYQEEIQMDLIDDETSKKTQQHSPQDLSNEETIKANHFedsseeskensdHHLDN  178
            DQENNGYQEE Q +LIDDETSKKTQQHSPQDLSNEE+   NHFEDSS ESKE+SD  LDN
Sbjct  121  DQENNGYQEETQTGLIDDETSKKTQQHSPQDLSNEEATEINHFEDSSKESKESSDPYLDN  180

Query  179  STETKTNFDGEKSEETQTQMDSGGNETSESSN--LADKLFKKARKLVDNKRPFTQQKNLd  236
            +TETKTNFDG+KSEETQTQMDSGG+ETSESSN  LADKLFKKARKLVDNKRPFTQQKNLD
Sbjct  181  PTETKTNFDGDKSEETQTQMDSGGDETSESSNGSLADKLFKKARKLVDNKRPFTQQKNLD  240

Query  237  eeiqepneeddqennGYQEEIQMDLIDDETSKKTQQHSPQDLSNEETIKANHFedsskes  296
            EE QE NEEDDQENNGYQEE Q +LIDDETSKKTQQHSPQDLSNEE+   NHFEDSSKES
Sbjct  241  EETQELNEEDDQENNGYQEETQTGLIDDETSKKTQQHSPQDLSNEEATEINHFEDSSKES  300

Query  297  kensdHHLDNSTETKTNFDGEKSEEI  322
            KE+SD  LDN+TETKTNFDG+KSEE 
Sbjct  301  KESSDPYLDNPTETKTNFDGDKSEET  326

3) HPSH112_04410 in NC_017741


> JQ685133|1|G1|442739051|AGC69785.1|Helicobacter_pylori_J166_isolate_31063-2.8/rOut1|+|1..5853|cagY|-|cag 
pathogenicity island 
protein Y
Length=1950

 Score = 1955 bits (7428),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 1641/1889 (87%), Positives = 1706/1889 (91%), Gaps = 127/1889 (6%)

Query  9     ETSKKTQQHSPQDLSNEETIKANHFedsskeskkssdHHLDNSTETKTNFDGEKSEETQT  68
             ETSKKTQQHSPQDLSNEE+   NHFEDSSKESK SSD  LDN+TETKTNFDG+KSEETQT
Sbjct  139   ETSKKTQQHSPQDLSNEEATEINHFEDSSKESKESSDPYLDNPTETKTNFDGDKSEETQT  198

Query  69    QMDSGGNETSESSN--LADKLFKKARKLVDNKKPFTQQKNLdeeiqepneeddqennGYQ  126
             QMDSGG+ETSESSN  LADKLFKKARKLVDNK+PFTQQKNLDEE QE NEEDDQENNGYQ
Sbjct  199   QMDSGGDETSESSNGSLADKLFKKARKLVDNKRPFTQQKNLDEETQELNEEDDQENNGYQ  258

Query  127   EEIQMDLIDDETSKKTQQHSPQDLSNEETIKANHFedsskeskkssdHHLDNSTETKTNF  186
             EE Q +LIDDETSKKTQQHSPQDLSNEE+   NHFEDSSKESK SSD  LDN+TETKTNF
Sbjct  259   EETQTGLIDDETSKKTQQHSPQDLSNEEATEINHFEDSSKESKESSDPYLDNPTETKTNF  318

Query  187   DGEKSEETQTQMDSGGNETSESSN--LADKLFKKARKLVDNKRPFTQQKNLDEEIQEPNE  244
             DG+KSEETQTQMDSGG+ETSESSN  LADKLFKKARKLVDNKRPFTQQKNLDEE QE NE
Sbjct  319   DGDKSEETQTQMDSGGDETSESSNGSLADKLFKKARKLVDNKRPFTQQKNLDEETQELNE  378

Query  245   EYDQENNGYQEETQMDLIDDETSKKTQQHSPQDLSNEETIKANHFedsskeskensdHHL  304
             E DQENNGYQEETQ +LIDDETSKKTQQHSPQDLSNEE+   NHFEDSSKESKE+SD  L
Sbjct  379   EDDQENNGYQEETQTGLIDDETSKKTQQHSPQDLSNEEATEINHFEDSSKESKESSDPYL  438

Query  305   DNSTETKTNFDGEKSEEITNDSNDQEiikgskkkyiiggivvavliviilFSRSIFHYFI  364
             DN+TETKTNFD +KSEEITNDSNDQEIIKGSKKKYIIGGIVVAVLIVIILFSRSIFHYF+
Sbjct  439   DNPTETKTNFDEDKSEEITNDSNDQEIIKGSKKKYIIGGIVVAVLIVIILFSRSIFHYFM  498

Query  365   PLEDKSSRFSKDRNLYVNDEIQIRQEYNRLLKERNEKGNMIDKNLFFNDDPNRTLYNYLN  424
             PLEDKSSRFSKDRNLYVNDEIQIRQEYNRLLKERNEKGNMIDKNLFFNDDPNRTLYNYLN
Sbjct  499   PLEDKSSRFSKDRNLYVNDEIQIRQEYNRLLKERNEKGNMIDKNLFFNDDPNRTLYNYLN  558

Query  425   IAEIEDKNPLKAFYECISNGGNYEEClklikdkklqdqmkktlEAYNDCIKNAKTEEERI  484
             IAEIEDKNPL+AFYECISNGGNYEECLKLIKDKKLQDQMKKTLEAYNDCIKNAKTEEERI
Sbjct  559   IAEIEDKNPLRAFYECISNGGNYEECLKLIKDKKLQDQMKKTLEAYNDCIKNAKTEEERI  618

Query  485   KCLDLIKDENLKKSLLNQQKVQVALDCLKNAKTDEERNECLKLINDPEIrekfrkelelq  544
             KCLDLIKDENLKKSLLNQQKVQVALDCLKNAKTDEER+ECLKLINDPEIREKFRKELELQ
Sbjct  619   KCLDLIKDENLKKSLLNQQKVQVALDCLKNAKTDEERKECLKLINDPEIREKFRKELELQ  678

Query  545   kelqeYKDCIKNAKTEAEKNECLKGLSKEAIERLKQQALDCLKNAKTDEERNECLKNIPQ  604
             KELQEYKDCIKNAKTEAEKNECLKGLSKEAIERLKQQALDCLKNAKTDEERNECLKNIPQ
Sbjct  679   KELQEYKDCIKNAKTEAEKNECLKGLSKEAIERLKQQALDCLKNAKTDEERNECLKNIPQ  738

Query  605   DLQKELLADMSVKAYKDCVSKARNEEERKACEKLLTPEAKKKLEQQVLDCLKNAKTDEER  664
             DLQKELLADMSVKAYKDCVSKARNE E++ CEKLLTPEA+KKLEQQVLDCLKNAKTDEER
Sbjct  739   DLQKELLADMSVKAYKDCVSKARNEKEKQECEKLLTPEARKKLEQQVLDCLKNAKTDEER  798

Query  665   KKCLKDLPKDLQSDILAKESLKAYKDCVSQARNEEERKSCeklltpeakklleeeakeSV  724
             KKCLKDLPKDLQSDILAKES+KAYKDCVSQA+NE E+K CEKLLTPEAKKLLEEEAKESV
Sbjct  799   KKCLKDLPKDLQSDILAKESVKAYKDCVSQAKNEAEKKECEKLLTPEAKKLLEEEAKESV  858

Query  725   KAYLDCVSQakteaekkeceklltpeakkkleeakksvkaYLDCVSRARNEKEKQECEKL  784
             KAYLDCVSQAKTEAEKKECEKLLTPEA+KKLEEAKKSVKAYLDCVS+A+NE EK+ECEKL
Sbjct  859   KAYLDCVSQAKTEAEKKECEKLLTPEARKKLEEAKKSVKAYLDCVSQAKNEDEKKECEKL  918

Query  785   LTPEAKKLLEQQALDCLKNAKTEAEKKRCVKDLPKDLQKKVLAKESLKVYLDCVSQakte  844
             LTPEA+KLLEQQALDCLKNAKT+ E+K+C+KDLPKDLQKKVLAKES+K YLDCVSQAKTE
Sbjct  919   LTPEARKLLEQQALDCLKNAKTDEERKKCLKDLPKDLQKKVLAKESVKAYLDCVSQAKTE  978

Query  845   aekkeceklltpeakklleeakeslkaYKDCVSRARNEKEKQECEKLLTPEAKKLLEQQA  904
             AEKKECEKLLTPEA+KLLEEAKES+KAYKDCVS+ARNEKEK+ECEKLLTPEAKKLLE++A
Sbjct  979   AEKKECEKLLTPEARKLLEEAKESIKAYKDCVSKARNEKEKKECEKLLTPEAKKLLEEEA  1038

Query  905   -------LDCLKNAKTEAEKKRCVKDL-PKDLQKKVLAKESLKVYLDCVSQakteaekke  956
                    LDC+ +AKTEAEKK C K L P   +K   AK S+K YLDCVS          
Sbjct  1039  KESVKAYLDCVSQAKTEAEKKECEKLLTPEAKKKLEEAKKSVKAYLDCVS----------  1088

Query  957   ceklltpeakklleeakeslkaYKDCLSQARNEEERKACEKLLTPEARKLLEQEVKKSVK  1016
                                         QA+NE+E+K CEKLLTPEA+KLLEQ+      
Sbjct  1089  ----------------------------QAKNEDEKKECEKLLTPEAKKLLEQQA-----  1115

Query  1017  AYLDCVSQakteaekkeceklltPEARKLLEQQALDCLKNAKTEAEKKRCVKDLPKDLQK  1076
               LDC                                LKNAKTEA+KKRCVKDLPKDLQK
Sbjct  1116  --LDC--------------------------------LKNAKTEADKKRCVKDLPKDLQK  1141

Query  1077  KVLAKESVKAYLDCVSRARNEKEKQECeklltpeakklleeakeslkaYKDCVSQAR---  1133
             KVLAKESVKAY DCVSRARNEKEK+ECEKLLTPEAKKLLEEAK S+KAY DCVSQA+   
Sbjct  1142  KVLAKESVKAYKDCVSRARNEKEKKECEKLLTPEAKKLLEEAKKSVKAYLDCVSQAKTEA  1201

Query  1134  -----------------------------------NEEERKACEKLLTPEARKLLEQEVK  1158
                                                NEEER+ACEKLLTPEARKLLEQEVK
Sbjct  1202  EKKECEKLLTPEAKKLLEEAKESLKAYKDCLSQARNEEERRACEKLLTPEARKLLEQEVK  1261

Query  1159  KSVKAYLDCVSRARNEKEKQECEKLLTPEARKFLAKQALSCLEKARNEEERKACLKNIPK  1218
             KSVKAYLDCVS+A+ E EK+ECEKLLTPEARKFLAKQ L+CLEKA NEEERKACLKN+PK
Sbjct  1262  KSVKAYLDCVSQAKTEAEKKECEKLLTPEARKFLAKQVLNCLEKAGNEEERKACLKNLPK  1321

Query  1219  DLQKNVLAKESLKAYKDCLSQARNEEERKACEKLLTPEARKLLEQEVKKSVKAYLDCVSR  1278
             DLQ NVLAKESLKAYKDCLSQARNEEER+ACEKLLTPEARKLLEQEVKKSVKAYLDCVSR
Sbjct  1322  DLQENVLAKESLKAYKDCLSQARNEEERRACEKLLTPEARKLLEQEVKKSVKAYLDCVSR  1381

Query  1279  ARNEKEKQECEKLLTPEARKFLAKELQQKDKAIKDCLKNADPNDRAAIMKCLDGLSDEEK  1338
             ARNEKEK+ECEKLLTPEARKFLAKELQQKDKAIKDCLKNADPNDRAAIMKCLDGLSDEEK
Sbjct  1382  ARNEKEKKECEKLLTPEARKFLAKELQQKDKAIKDCLKNADPNDRAAIMKCLDGLSDEEK  1441

Query  1339  LKYLQEAREKAVLDCLKTARSDEEKRKCQNLYSDLIQEIQNKRTQSKQNQLSKTERLHQA  1398
             LKYLQEAREKAVLDCLKTAR+DEEKRKCQNLYSDLIQEIQNKRTQSKQNQLSKTERLHQA
Sbjct  1442  LKYLQEAREKAVLDCLKTARTDEEKRKCQNLYSDLIQEIQNKRTQSKQNQLSKTERLHQA  1501

Query  1399  SECLDNLDDPTDQEAIEQCLEGLSDSERALILGIKRQADEVDLIYSDLRNRKTFDNMAAK  1458
             SECLDNLDDPTDQ+AIEQCLEGLSDSERALILGIKRQADEVD IYSDLRNRKTFDNMAAK
Sbjct  1502  SECLDNLDDPTDQQAIEQCLEGLSDSERALILGIKRQADEVDRIYSDLRNRKTFDNMAAK  1561

Query  1459  GYPLLPMDFKNGGDIATINATNVDADKIASDNPIYASIEPDITKQYETEKTIkdknleak  1518
             GYPLLPMDFKNGGDIATINATNVDADKIASDNPIYASIEPDITKQYETEKTIKDKNLEAK
Sbjct  1562  GYPLLPMDFKNGGDIATINATNVDADKIASDNPIYASIEPDITKQYETEKTIKDKNLEAK  1621

Query  1519  lakalggnkkdddkekskksTAEARVESNKIDKDVAETAKNISEIALKNKKEKNGEFVDE  1578
             LAKALGGNKKDDDKEKSKKSTAEA+VESNKIDKDVAETAKNISEIALKNKKEKNGEFVDE
Sbjct  1622  LAKALGGNKKDDDKEKSKKSTAEAKVESNKIDKDVAETAKNISEIALKNKKEKNGEFVDE  1681

Query  1579  NGNPIddkkktekqdetSPVKQAFIGKSDPTFVLAQYTPIEITLTSKVDATLTGIVSGVV  1638
             NGNPIDDKKK+EKQDETSPVKQAFIGKSDPTFVLAQYTPIEITLTSKVDATLTGIVSGVV
Sbjct  1682  NGNPIDDKKKAEKQDETSPVKQAFIGKSDPTFVLAQYTPIEITLTSKVDATLTGIVSGVV  1741

Query  1639  AKDVWNMNGTMILLDKGTKVYGNYQSVKGGTPIMTRLMIVFTKAITPDGVIIPLANAQAA  1698
             AKDVWNMNGTMILLDKGTKVYGNYQSVKGGTPIMTRLMIVFTKAITPDGVIIPLANAQAA
Sbjct  1742  AKDVWNMNGTMILLDKGTKVYGNYQSVKGGTPIMTRLMIVFTKAITPDGVIIPLANAQAA  1801

Query  1699  GMLGEAGVDGYVNNHFMKRIGFAVIASVVNSFLQTAPIIALDKLIGLGKGRSERTPEFNY  1758
             GMLGEAGVDGYVNNHFMKRIGFAVIASVVNSFLQTAPIIALDKLIGLGKGRSERTPEFNY
Sbjct  1802  GMLGEAGVDGYVNNHFMKRIGFAVIASVVNSFLQTAPIIALDKLIGLGKGRSERTPEFNY  1861

Query  1759  ALGQAINGSMQSSAQMSNQILGQLMNIPPSFYKNEGDSIKILTMDDIDFSGVYDVKITNK  1818
             ALGQAINGSMQSSAQMSNQILGQLMNIPPSFYKNEGDSIKILTMDDIDFSGVYDVKITNK
Sbjct  1862  ALGQAINGSMQSSAQMSNQILGQLMNIPPSFYKNEGDSIKILTMDDIDFSGVYDVKITNK  1921

Query  1819  SVVDEIIKQSTKTLSREHEEITTSPKGGN  1847
             SVVDEIIKQSTKTLSREHEEITTSPKGGN
Sbjct  1922  SVVDEIIKQSTKTLSREHEEITTSPKGGN  1950


 Score =  304 bits (1138),  Expect = 4e-83, Method: Compositional matrix adjust.
 Identities = 281/326 (87%), Positives = 296/326 (91%), Gaps = 4/326 (1%)

Query  1    MNEENDKLETSKKTQQHSPQDLSNEETIKANHFedsskeskkssdHHLDNSTETKTNFDG  60
            MNEENDKLETSKKTQQHSPQDLSNEE+   NHFEDSSKESK SSD  LDN+TETKTNFDG
Sbjct  1    MNEENDKLETSKKTQQHSPQDLSNEEATEINHFEDSSKESKESSDPYLDNPTETKTNFDG  60

Query  61   EKSEETQTQMDSGGNETSESSN--LADKLFKKARKLVDNKKPFTQQKNLdeeiqepneed  118
            +KSEETQTQMDSGG+ETSESSN  LADKLFKKARKLVDNK+PFTQQKNLDEE QE NEED
Sbjct  61   DKSEETQTQMDSGGDETSESSNGSLADKLFKKARKLVDNKRPFTQQKNLDEETQELNEED  120

Query  119  dqennGYQEEIQMDLIDDETSKKTQQHSPQDLSNEETIKANHFedsskeskkssdHHLDN  178
            DQENNGYQEE Q +LIDDETSKKTQQHSPQDLSNEE+   NHFEDSSKESK SSD  LDN
Sbjct  121  DQENNGYQEETQTGLIDDETSKKTQQHSPQDLSNEEATEINHFEDSSKESKESSDPYLDN  180

Query  179  STETKTNFDGEKSEETQTQMDSGGNETSESSN--LADKLFKKARKLVDNKRPFTQQKNLD  236
            +TETKTNFDG+KSEETQTQMDSGG+ETSESSN  LADKLFKKARKLVDNKRPFTQQKNLD
Sbjct  181  PTETKTNFDGDKSEETQTQMDSGGDETSESSNGSLADKLFKKARKLVDNKRPFTQQKNLD  240

Query  237  EEIQEPNEEYDQENNGYQEETQMDLIDDETSKKTQQHSPQDLSNEETIKANHFedsskes  296
            EE QE NEE DQENNGYQEETQ +LIDDETSKKTQQHSPQDLSNEE+   NHFEDSSKES
Sbjct  241  EETQELNEEDDQENNGYQEETQTGLIDDETSKKTQQHSPQDLSNEEATEINHFEDSSKES  300

Query  297  kensdHHLDNSTETKTNFDGEKSEEI  322
            KE+SD  LDN+TETKTNFDG+KSEE 
Sbjct  301  KESSDPYLDNPTETKTNFDGDKSEET  326

4) K748_07945 in NC_021882


> JQ685133|1|G1|442739051|AGC69785.1|Helicobacter_pylori_J166_isolate_31063-2.8/rOut1|+|1..5853|cagY|-|cag 
pathogenicity island 
protein Y
Length=1950

 Score = 1946 bits (7393),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 1623/1859 (88%), Positives = 1691/1859 (91%), Gaps = 63/1859 (3%)

Query  9     ENSKKTQQHSPQDLSNEEATEANHFedsskeskessdHHLDNPTETKTNFDGYKSEETQT  68
             E SKKTQQHSPQDLSNEEATE NHFEDSSKESKESSD  LDNPTETKTNFDG KSEETQT
Sbjct  139   ETSKKTQQHSPQDLSNEEATEINHFEDSSKESKESSDPYLDNPTETKTNFDGDKSEETQT  198

Query  69    QMDsggnetsessngnLADKLFKKARKLVDDKRPFTQQKILDEEIQEPNEEDDQESNGYQ  128
             QMDSGG+ETSESSNG+LADKLFKKARKLVD+KRPFTQQK LDEE QE NEEDDQE+NGYQ
Sbjct  199   QMDSGGDETSESSNGSLADKLFKKARKLVDNKRPFTQQKNLDEETQELNEEDDQENNGYQ  258

Query  129   EETQMDLIDDETSKKTQQHSPQDLSNEEATEANHFedsskeskessdHHLDNPTETKTNF  188
             EETQ +LIDDETSKKTQQHSPQDLSNEEATE NHFEDSSKESKESSD  LDNPTETKTNF
Sbjct  259   EETQTGLIDDETSKKTQQHSPQDLSNEEATEINHFEDSSKESKESSDPYLDNPTETKTNF  318

Query  189   DGYKSEETQTQMDsggnetsessngnLADKLFKKARKLVDDKRPFTQQKILDEEIQEPNE  248
             DG KSEETQTQMDSGG+ETSESSNG+LADKLFKKARKLVD+KRPFTQQK LDEE QE NE
Sbjct  319   DGDKSEETQTQMDSGGDETSESSNGSLADKLFKKARKLVDNKRPFTQQKNLDEETQELNE  378

Query  249   EDDQESNGYQEETQMDLIDDETSKKTQQHSPQDLSNEEATEANHFedsskeskessdHHL  308
             EDDQE+NGYQEETQ +LIDDETSKKTQQHSPQDLSNEEATE NHFEDSSKESKESSD  L
Sbjct  379   EDDQENNGYQEETQTGLIDDETSKKTQQHSPQDLSNEEATEINHFEDSSKESKESSDPYL  438

Query  309   DNPTETKTNFDEYESEEITNDSNDQEiikgskkkyiiggivvavliviilFSRSIFHYFI  368
             DNPTETKTNFDE  SEEITNDSNDQEIIKGSKKKYIIGGIVVAVLIVIILFSRSIFHYF+
Sbjct  439   DNPTETKTNFDEDKSEEITNDSNDQEIIKGSKKKYIIGGIVVAVLIVIILFSRSIFHYFM  498

Query  369   PLEDKSSRFSKDRNLYVNDEIQIRQEYNRLLKERNEKGNMIDKNLFFNDDPNRTLYNYLN  428
             PLEDKSSRFSKDRNLYVNDEIQIRQEYNRLLKERNEKGNMIDKNLFFNDDPNRTLYNYLN
Sbjct  499   PLEDKSSRFSKDRNLYVNDEIQIRQEYNRLLKERNEKGNMIDKNLFFNDDPNRTLYNYLN  558

Query  429   IAEIEDKNPLRAFYECISNGGNYEEClklikdkklqdqmkRTLEAYNDCIKNAKTEEERI  488
             IAEIEDKNPLRAFYECISNGGNYEECLKLIKDKKLQDQMK+TLEAYNDCIKNAKTEEERI
Sbjct  559   IAEIEDKNPLRAFYECISNGGNYEECLKLIKDKKLQDQMKKTLEAYNDCIKNAKTEEERI  618

Query  489   KCLDLIKDENLKKSLLNQQKVQVALDCLKNAKTDEERNECLKLINDPEIREKFRKELGLQ  548
             KCLDLIKDENLKKSLLNQQKVQVALDCLKNAKTDEER+ECLKLINDPEIREKFRKEL LQ
Sbjct  619   KCLDLIKDENLKKSLLNQQKVQVALDCLKNAKTDEERKECLKLINDPEIREKFRKELELQ  678

Query  549   KELQEYKDCIKNAKTEAEKNECLKGLSKEAIERLKQQALDCLKSAKTDEERKKCLKNIPK  608
             KELQEYKDCIKNAKTEAEKNECLKGLSKEAIERLKQQALDCLK+AKTDEER+ CLKNIP+
Sbjct  679   KELQEYKDCIKNAKTEAEKNECLKGLSKEAIERLKQQALDCLKNAKTDEERNECLKNIPQ  738

Query  609   DLQKELLADMSVKAYKDCVSKARNekekkecekLLTPEAKKKLEQQVLDCLKNAKTDEER  668
             DLQKELLADMSVKAYKDCVSKARNEKEK+ECEKLLTPEA+KKLEQQVLDCLKNAKTDEER
Sbjct  739   DLQKELLADMSVKAYKDCVSKARNEKEKQECEKLLTPEARKKLEQQVLDCLKNAKTDEER  798

Query  669   KKCLKDLPKDLQSDILAKKSLKAYKDCVSRARNEKEKQECeklltpeakklleeeakeSV  728
             KKCLKDLPKDLQSDILAK S+KAYKDCVS+A+NE EK+ECEKLLTPEAKKLLEEEAKESV
Sbjct  799   KKCLKDLPKDLQSDILAKESVKAYKDCVSQAKNEAEKKECEKLLTPEAKKLLEEEAKESV  858

Query  729   KAYLDCVSQakteaekkeceklltpeakkkleeakksvkaYLDCVSQakteaekkecekl  788
             KAYLDCVSQAKTEAEKKECEKLLTPEA+KKLEEAKKSVKAYLDCVSQAK E EKKECEKL
Sbjct  859   KAYLDCVSQAKTEAEKKECEKLLTPEARKKLEEAKKSVKAYLDCVSQAKNEDEKKECEKL  918

Query  789   ltPEAKKLLEQQALDCLKSAKTDEERKKCLKDLPKDLQKKVLAKESLKAYKDCVSRARNE  848
             LTPEA+KLLEQQALDCLK+AKTDEERKKCLKDLPKDLQKKVLAKES+KAY DCVS+A+ E
Sbjct  919   LTPEARKLLEQQALDCLKNAKTDEERKKCLKDLPKDLQKKVLAKESVKAYLDCVSQAKTE  978

Query  849   KEKQECeklltpeakklleeeakeSVKAYLDCVSQakteaekkeceklltPEAKKLLEQQ  908
              EK+EC   L     + L EEAKES+KAY DCVS+A+ E EKKECEKLLTPEAKKLLE++
Sbjct  979   AEKKEC-EKLLTPEARKLLEEAKESIKAYKDCVSKARNEKEKKECEKLLTPEAKKLLEEE  1037

Query  909   A-------LDCLKSAKTDEERKKCLKDL-PKDLQKKVLAKESLKAYKDCVSRARNEKEKQ  960
             A       LDC+  AKT+ E+K C K L P   +K   AK S+KAY DCVS+A+NE EK+
Sbjct  1038  AKESVKAYLDCVSQAKTEAEKKECEKLLTPEAKKKLEEAKKSVKAYLDCVSQAKNEDEKK  1097

Query  961   ECeklltpeakklleeakkslkaykDCVSRARNEKEKQECeklltpeakklleeakkslk  1020
             EC      E     E  K   +   DC+  A+ E +K+ C     P   +    AK S+K
Sbjct  1098  EC------EKLLTPEAKKLLEQQALDCLKNAKTEADKKRC-VKDLPKDLQKKVLAKESVK  1150

Query  1021  aykDCVSRARNEKEKQECEKLLTPEAKNLLEQQA------LDCLKSAKTEAEKKRCVKDL  1074
             AYKDCVSRARNEKEK+ECEKLLTPEAK+LLE+        LDC+  AKTEAEKK C K L
Sbjct  1151  AYKDCVSRARNEKEKKECEKLLTPEAKKLLEEAKKSVKAYLDCVSQAKTEAEKKECEKLL  1210

Query  1075  PKDLQKKVL--AKESVKAYLDCVSRARNekekkeceklltpeakklleeakeslkaYKDC  1132
               +  KK+L  AKES+KAY DC+S+AR                                 
Sbjct  1211  TPE-AKKLLEEAKESLKAYKDCLSQAR---------------------------------  1236

Query  1133  LSQARNEEERRACEKLLTPEARKLLEQEVKKSVKAYLDCVSRARNEKEKQECEKLLTPEA  1192
                  NEEERRACEKLLTPEARKLLEQEVKKSVKAYLDCVS+A+ E EK+ECEKLLTPEA
Sbjct  1237  -----NEEERRACEKLLTPEARKLLEQEVKKSVKAYLDCVSQAKTEAEKKECEKLLTPEA  1291

Query  1193  RKFLAKQVLSCLEKARNEEERKACLKNIPKDLQKNVLAKESLKAYKDCLSQARNEEERRA  1252
             RKFLAKQVL+CLEKA NEEERKACLKN+PKDLQ NVLAKESLKAYKDCLSQARNEEERRA
Sbjct  1292  RKFLAKQVLNCLEKAGNEEERKACLKNLPKDLQENVLAKESLKAYKDCLSQARNEEERRA  1351

Query  1253  CEKLLTPEARKLLEQEVKKSVKAYLDCVSRARNEKEKQECEKLLTPEARKFLAKELQQKD  1312
             CEKLLTPEARKLLEQEVKKSVKAYLDCVSRARNEKEK+ECEKLLTPEARKFLAKELQQKD
Sbjct  1352  CEKLLTPEARKLLEQEVKKSVKAYLDCVSRARNEKEKKECEKLLTPEARKFLAKELQQKD  1411

Query  1313  KAIKDCLKNADPNDRAAIMKCLDGLSDEEKLKYLQEAREKAVLDCLKTARTDEEKRKCQN  1372
             KAIKDCLKNADPNDRAAIMKCLDGLSDEEKLKYLQEAREKAVLDCLKTARTDEEKRKCQN
Sbjct  1412  KAIKDCLKNADPNDRAAIMKCLDGLSDEEKLKYLQEAREKAVLDCLKTARTDEEKRKCQN  1471

Query  1373  LYSDLIQEIQNKRTQNKQNQLSKTERLHQASECLDNLDDPTDQEAIEQCLEGLSDSERAL  1432
             LYSDLIQEIQNKRTQ+KQNQLSKTERLHQASECLDNLDDPTDQ+AIEQCLEGLSDSERAL
Sbjct  1472  LYSDLIQEIQNKRTQSKQNQLSKTERLHQASECLDNLDDPTDQQAIEQCLEGLSDSERAL  1531

Query  1433  ILGIKRQADEVDLIYSDLRNRKTFDNMAAKGYPLLPMDFKNGGDIATINATNVDADKIAS  1492
             ILGIKRQADEVD IYSDLRNRKTFDNMAAKGYPLLPMDFKNGGDIATINATNVDADKIAS
Sbjct  1532  ILGIKRQADEVDRIYSDLRNRKTFDNMAAKGYPLLPMDFKNGGDIATINATNVDADKIAS  1591

Query  1493  DNPIYASIEPDITKQYETEKTIkdknleaklakalggnkkdddkekskkstaeakvesNK  1552
             DNPIYASIEPDITKQYETEKTIKDKNLEAKLAKALGGNKKDDDKEKSKKSTAEAKVESNK
Sbjct  1592  DNPIYASIEPDITKQYETEKTIKDKNLEAKLAKALGGNKKDDDKEKSKKSTAEAKVESNK  1651

Query  1553  IDKDVAETAKNISEIALKNKKEKSGEFVDENGNPIDDKKKAETQDETSPVKQAFIGKSDP  1612
             IDKDVAETAKNISEIALKNKKEK+GEFVDENGNPIDDKKKAE QDETSPVKQAFIGKSDP
Sbjct  1652  IDKDVAETAKNISEIALKNKKEKNGEFVDENGNPIDDKKKAEKQDETSPVKQAFIGKSDP  1711

Query  1613  TFVLAQYTPIEITLTSKVDATLTGIVSGVVAKDVWNMNGTMILLDKGTKVYGNYQSVKGG  1672
             TFVLAQYTPIEITLTSKVDATLTGIVSGVVAKDVWNMNGTMILLDKGTKVYGNYQSVKGG
Sbjct  1712  TFVLAQYTPIEITLTSKVDATLTGIVSGVVAKDVWNMNGTMILLDKGTKVYGNYQSVKGG  1771

Query  1673  TPIMTRLMIVFTKAITPDGVIIPLANAQAAGMLGEAGVDGYVNNHFMKRIGFAVIASVVN  1732
             TPIMTRLMIVFTKAITPDGVIIPLANAQAAGMLGEAGVDGYVNNHFMKRIGFAVIASVVN
Sbjct  1772  TPIMTRLMIVFTKAITPDGVIIPLANAQAAGMLGEAGVDGYVNNHFMKRIGFAVIASVVN  1831

Query  1733  SFLQTAPIIALDKLIGLGKGRSERTPEFNYALGQAINGSMQSSAQMSNQILGQLMNIPPS  1792
             SFLQTAPIIALDKLIGLGKGRSERTPEFNYALGQAINGSMQSSAQMSNQILGQLMNIPPS
Sbjct  1832  SFLQTAPIIALDKLIGLGKGRSERTPEFNYALGQAINGSMQSSAQMSNQILGQLMNIPPS  1891

Query  1793  FYKNEGDSIKILTMDDIDFSGVYDVKITNKSVVDEIIKQSTKTLSREHEEITTSPKGGN  1851
             FYKNEGDSIKILTMDDIDFSGVYDVKITNKSVVDEIIKQSTKTLSREHEEITTSPKGGN
Sbjct  1892  FYKNEGDSIKILTMDDIDFSGVYDVKITNKSVVDEIIKQSTKTLSREHEEITTSPKGGN  1950


 Score =  302 bits (1132),  Expect = 1e-82, Method: Compositional matrix adjust.
 Identities = 292/326 (90%), Positives = 302/326 (93%), Gaps = 0/326 (0%)

Query  1    MNEENDKLENSKKTQQHSPQDLSNEEATEANHFedsskeskessdHHLDNPTETKTNFDG  60
            MNEENDKLE SKKTQQHSPQDLSNEEATE NHFEDSSKESKESSD  LDNPTETKTNFDG
Sbjct  1    MNEENDKLETSKKTQQHSPQDLSNEEATEINHFEDSSKESKESSDPYLDNPTETKTNFDG  60

Query  61   YKSEETQTQMDsggnetsessngnLADKLFKKARKLVDDKRPFTQQKILDEEIQEPNEED  120
             KSEETQTQMDSGG+ETSESSNG+LADKLFKKARKLVD+KRPFTQQK LDEE QE NEED
Sbjct  61   DKSEETQTQMDSGGDETSESSNGSLADKLFKKARKLVDNKRPFTQQKNLDEETQELNEED  120

Query  121  DQESNGYQEETQMDLIDDETSKKTQQHSPQDLSNEEATEANHFedsskeskessdHHLDN  180
            DQE+NGYQEETQ +LIDDETSKKTQQHSPQDLSNEEATE NHFEDSSKESKESSD  LDN
Sbjct  121  DQENNGYQEETQTGLIDDETSKKTQQHSPQDLSNEEATEINHFEDSSKESKESSDPYLDN  180

Query  181  PTETKTNFDGYKSEETQTQMDsggnetsessngnLADKLFKKARKLVDDKRPFTQQKILD  240
            PTETKTNFDG KSEETQTQMDSGG+ETSESSNG+LADKLFKKARKLVD+KRPFTQQK LD
Sbjct  181  PTETKTNFDGDKSEETQTQMDSGGDETSESSNGSLADKLFKKARKLVDNKRPFTQQKNLD  240

Query  241  EEIQEPNEEDDQESNGYQEETQMDLIDDETSKKTQQHSPQDLSNEEATEANHFedsskes  300
            EE QE NEEDDQE+NGYQEETQ +LIDDETSKKTQQHSPQDLSNEEATE NHFEDSSKES
Sbjct  241  EETQELNEEDDQENNGYQEETQTGLIDDETSKKTQQHSPQDLSNEEATEINHFEDSSKES  300

Query  301  kessdHHLDNPTETKTNFDEYESEEI  326
            KESSD  LDNPTETKTNFD   SEE 
Sbjct  301  KESSDPYLDNPTETKTNFDGDKSEET  326

5) K749_01335 in NC_021216


> JQ685133|1|G1|442739051|AGC69785.1|Helicobacter_pylori_J166_isolate_31063-2.8/rOut1|+|1..5853|cagY|-|cag 
pathogenicity island 
protein Y
Length=1950

 Score = 1946 bits (7393),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 1623/1859 (88%), Positives = 1691/1859 (91%), Gaps = 63/1859 (3%)

Query  9     ENSKKTQQHSPQDLSNEEATEANHFedsskeskessdHHLDNPTETKTNFDGYKSEETQT  68
             E SKKTQQHSPQDLSNEEATE NHFEDSSKESKESSD  LDNPTETKTNFDG KSEETQT
Sbjct  139   ETSKKTQQHSPQDLSNEEATEINHFEDSSKESKESSDPYLDNPTETKTNFDGDKSEETQT  198

Query  69    QMDsggnetsessngnLADKLFKKARKLVDDKRPFTQQKILDEEIQEPNEEDDQESNGYQ  128
             QMDSGG+ETSESSNG+LADKLFKKARKLVD+KRPFTQQK LDEE QE NEEDDQE+NGYQ
Sbjct  199   QMDSGGDETSESSNGSLADKLFKKARKLVDNKRPFTQQKNLDEETQELNEEDDQENNGYQ  258

Query  129   EETQMDLIDDETSKKTQQHSPQDLSNEEATEANHFedsskeskessdHHLDNPTETKTNF  188
             EETQ +LIDDETSKKTQQHSPQDLSNEEATE NHFEDSSKESKESSD  LDNPTETKTNF
Sbjct  259   EETQTGLIDDETSKKTQQHSPQDLSNEEATEINHFEDSSKESKESSDPYLDNPTETKTNF  318

Query  189   DGYKSEETQTQMDsggnetsessngnLADKLFKKARKLVDDKRPFTQQKILDEEIQEPNE  248
             DG KSEETQTQMDSGG+ETSESSNG+LADKLFKKARKLVD+KRPFTQQK LDEE QE NE
Sbjct  319   DGDKSEETQTQMDSGGDETSESSNGSLADKLFKKARKLVDNKRPFTQQKNLDEETQELNE  378

Query  249   EDDQESNGYQEETQMDLIDDETSKKTQQHSPQDLSNEEATEANHFedsskeskessdHHL  308
             EDDQE+NGYQEETQ +LIDDETSKKTQQHSPQDLSNEEATE NHFEDSSKESKESSD  L
Sbjct  379   EDDQENNGYQEETQTGLIDDETSKKTQQHSPQDLSNEEATEINHFEDSSKESKESSDPYL  438

Query  309   DNPTETKTNFDEYESEEITNDSNDQEiikgskkkyiiggivvavliviilFSRSIFHYFI  368
             DNPTETKTNFDE  SEEITNDSNDQEIIKGSKKKYIIGGIVVAVLIVIILFSRSIFHYF+
Sbjct  439   DNPTETKTNFDEDKSEEITNDSNDQEIIKGSKKKYIIGGIVVAVLIVIILFSRSIFHYFM  498

Query  369   PLEDKSSRFSKDRNLYVNDEIQIRQEYNRLLKERNEKGNMIDKNLFFNDDPNRTLYNYLN  428
             PLEDKSSRFSKDRNLYVNDEIQIRQEYNRLLKERNEKGNMIDKNLFFNDDPNRTLYNYLN
Sbjct  499   PLEDKSSRFSKDRNLYVNDEIQIRQEYNRLLKERNEKGNMIDKNLFFNDDPNRTLYNYLN  558

Query  429   IAEIEDKNPLRAFYECISNGGNYEEClklikdkklqdqmkRTLEAYNDCIKNAKTEEERI  488
             IAEIEDKNPLRAFYECISNGGNYEECLKLIKDKKLQDQMK+TLEAYNDCIKNAKTEEERI
Sbjct  559   IAEIEDKNPLRAFYECISNGGNYEECLKLIKDKKLQDQMKKTLEAYNDCIKNAKTEEERI  618

Query  489   KCLDLIKDENLKKSLLNQQKVQVALDCLKNAKTDEERNECLKLINDPEIREKFRKELGLQ  548
             KCLDLIKDENLKKSLLNQQKVQVALDCLKNAKTDEER+ECLKLINDPEIREKFRKEL LQ
Sbjct  619   KCLDLIKDENLKKSLLNQQKVQVALDCLKNAKTDEERKECLKLINDPEIREKFRKELELQ  678

Query  549   KELQEYKDCIKNAKTEAEKNECLKGLSKEAIERLKQQALDCLKSAKTDEERKKCLKNIPK  608
             KELQEYKDCIKNAKTEAEKNECLKGLSKEAIERLKQQALDCLK+AKTDEER+ CLKNIP+
Sbjct  679   KELQEYKDCIKNAKTEAEKNECLKGLSKEAIERLKQQALDCLKNAKTDEERNECLKNIPQ  738

Query  609   DLQKELLADMSVKAYKDCVSKARNekekkecekLLTPEAKKKLEQQVLDCLKNAKTDEER  668
             DLQKELLADMSVKAYKDCVSKARNEKEK+ECEKLLTPEA+KKLEQQVLDCLKNAKTDEER
Sbjct  739   DLQKELLADMSVKAYKDCVSKARNEKEKQECEKLLTPEARKKLEQQVLDCLKNAKTDEER  798

Query  669   KKCLKDLPKDLQSDILAKKSLKAYKDCVSRARNEKEKQECeklltpeakklleeeakeSV  728
             KKCLKDLPKDLQSDILAK S+KAYKDCVS+A+NE EK+ECEKLLTPEAKKLLEEEAKESV
Sbjct  799   KKCLKDLPKDLQSDILAKESVKAYKDCVSQAKNEAEKKECEKLLTPEAKKLLEEEAKESV  858

Query  729   KAYLDCVSQakteaekkeceklltpeakkkleeakksvkaYLDCVSQakteaekkecekl  788
             KAYLDCVSQAKTEAEKKECEKLLTPEA+KKLEEAKKSVKAYLDCVSQAK E EKKECEKL
Sbjct  859   KAYLDCVSQAKTEAEKKECEKLLTPEARKKLEEAKKSVKAYLDCVSQAKNEDEKKECEKL  918

Query  789   ltPEAKKLLEQQALDCLKSAKTDEERKKCLKDLPKDLQKKVLAKESLKAYKDCVSRARNE  848
             LTPEA+KLLEQQALDCLK+AKTDEERKKCLKDLPKDLQKKVLAKES+KAY DCVS+A+ E
Sbjct  919   LTPEARKLLEQQALDCLKNAKTDEERKKCLKDLPKDLQKKVLAKESVKAYLDCVSQAKTE  978

Query  849   KEKQECeklltpeakklleeeakeSVKAYLDCVSQakteaekkeceklltPEAKKLLEQQ  908
              EK+EC   L     + L EEAKES+KAY DCVS+A+ E EKKECEKLLTPEAKKLLE++
Sbjct  979   AEKKEC-EKLLTPEARKLLEEAKESIKAYKDCVSKARNEKEKKECEKLLTPEAKKLLEEE  1037

Query  909   A-------LDCLKSAKTDEERKKCLKDL-PKDLQKKVLAKESLKAYKDCVSRARNEKEKQ  960
             A       LDC+  AKT+ E+K C K L P   +K   AK S+KAY DCVS+A+NE EK+
Sbjct  1038  AKESVKAYLDCVSQAKTEAEKKECEKLLTPEAKKKLEEAKKSVKAYLDCVSQAKNEDEKK  1097

Query  961   ECeklltpeakklleeakkslkaykDCVSRARNEKEKQECeklltpeakklleeakkslk  1020
             EC      E     E  K   +   DC+  A+ E +K+ C     P   +    AK S+K
Sbjct  1098  EC------EKLLTPEAKKLLEQQALDCLKNAKTEADKKRC-VKDLPKDLQKKVLAKESVK  1150

Query  1021  aykDCVSRARNEKEKQECEKLLTPEAKNLLEQQA------LDCLKSAKTEAEKKRCVKDL  1074
             AYKDCVSRARNEKEK+ECEKLLTPEAK+LLE+        LDC+  AKTEAEKK C K L
Sbjct  1151  AYKDCVSRARNEKEKKECEKLLTPEAKKLLEEAKKSVKAYLDCVSQAKTEAEKKECEKLL  1210

Query  1075  PKDLQKKVL--AKESVKAYLDCVSRARNekekkeceklltpeakklleeakeslkaYKDC  1132
               +  KK+L  AKES+KAY DC+S+AR                                 
Sbjct  1211  TPE-AKKLLEEAKESLKAYKDCLSQAR---------------------------------  1236

Query  1133  LSQARNEEERRACEKLLTPEARKLLEQEVKKSVKAYLDCVSRARNEKEKQECEKLLTPEA  1192
                  NEEERRACEKLLTPEARKLLEQEVKKSVKAYLDCVS+A+ E EK+ECEKLLTPEA
Sbjct  1237  -----NEEERRACEKLLTPEARKLLEQEVKKSVKAYLDCVSQAKTEAEKKECEKLLTPEA  1291

Query  1193  RKFLAKQVLSCLEKARNEEERKACLKNIPKDLQKNVLAKESLKAYKDCLSQARNEEERRA  1252
             RKFLAKQVL+CLEKA NEEERKACLKN+PKDLQ NVLAKESLKAYKDCLSQARNEEERRA
Sbjct  1292  RKFLAKQVLNCLEKAGNEEERKACLKNLPKDLQENVLAKESLKAYKDCLSQARNEEERRA  1351

Query  1253  CEKLLTPEARKLLEQEVKKSVKAYLDCVSRARNEKEKQECEKLLTPEARKFLAKELQQKD  1312
             CEKLLTPEARKLLEQEVKKSVKAYLDCVSRARNEKEK+ECEKLLTPEARKFLAKELQQKD
Sbjct  1352  CEKLLTPEARKLLEQEVKKSVKAYLDCVSRARNEKEKKECEKLLTPEARKFLAKELQQKD  1411

Query  1313  KAIKDCLKNADPNDRAAIMKCLDGLSDEEKLKYLQEAREKAVLDCLKTARTDEEKRKCQN  1372
             KAIKDCLKNADPNDRAAIMKCLDGLSDEEKLKYLQEAREKAVLDCLKTARTDEEKRKCQN
Sbjct  1412  KAIKDCLKNADPNDRAAIMKCLDGLSDEEKLKYLQEAREKAVLDCLKTARTDEEKRKCQN  1471

Query  1373  LYSDLIQEIQNKRTQNKQNQLSKTERLHQASECLDNLDDPTDQEAIEQCLEGLSDSERAL  1432
             LYSDLIQEIQNKRTQ+KQNQLSKTERLHQASECLDNLDDPTDQ+AIEQCLEGLSDSERAL
Sbjct  1472  LYSDLIQEIQNKRTQSKQNQLSKTERLHQASECLDNLDDPTDQQAIEQCLEGLSDSERAL  1531

Query  1433  ILGIKRQADEVDLIYSDLRNRKTFDNMAAKGYPLLPMDFKNGGDIATINATNVDADKIAS  1492
             ILGIKRQADEVD IYSDLRNRKTFDNMAAKGYPLLPMDFKNGGDIATINATNVDADKIAS
Sbjct  1532  ILGIKRQADEVDRIYSDLRNRKTFDNMAAKGYPLLPMDFKNGGDIATINATNVDADKIAS  1591

Query  1493  DNPIYASIEPDITKQYETEKTIkdknleaklakalggnkkdddkekskkstaeakvesNK  1552
             DNPIYASIEPDITKQYETEKTIKDKNLEAKLAKALGGNKKDDDKEKSKKSTAEAKVESNK
Sbjct  1592  DNPIYASIEPDITKQYETEKTIKDKNLEAKLAKALGGNKKDDDKEKSKKSTAEAKVESNK  1651

Query  1553  IDKDVAETAKNISEIALKNKKEKSGEFVDENGNPIDDKKKAETQDETSPVKQAFIGKSDP  1612
             IDKDVAETAKNISEIALKNKKEK+GEFVDENGNPIDDKKKAE QDETSPVKQAFIGKSDP
Sbjct  1652  IDKDVAETAKNISEIALKNKKEKNGEFVDENGNPIDDKKKAEKQDETSPVKQAFIGKSDP  1711

Query  1613  TFVLAQYTPIEITLTSKVDATLTGIVSGVVAKDVWNMNGTMILLDKGTKVYGNYQSVKGG  1672
             TFVLAQYTPIEITLTSKVDATLTGIVSGVVAKDVWNMNGTMILLDKGTKVYGNYQSVKGG
Sbjct  1712  TFVLAQYTPIEITLTSKVDATLTGIVSGVVAKDVWNMNGTMILLDKGTKVYGNYQSVKGG  1771

Query  1673  TPIMTRLMIVFTKAITPDGVIIPLANAQAAGMLGEAGVDGYVNNHFMKRIGFAVIASVVN  1732
             TPIMTRLMIVFTKAITPDGVIIPLANAQAAGMLGEAGVDGYVNNHFMKRIGFAVIASVVN
Sbjct  1772  TPIMTRLMIVFTKAITPDGVIIPLANAQAAGMLGEAGVDGYVNNHFMKRIGFAVIASVVN  1831

Query  1733  SFLQTAPIIALDKLIGLGKGRSERTPEFNYALGQAINGSMQSSAQMSNQILGQLMNIPPS  1792
             SFLQTAPIIALDKLIGLGKGRSERTPEFNYALGQAINGSMQSSAQMSNQILGQLMNIPPS
Sbjct  1832  SFLQTAPIIALDKLIGLGKGRSERTPEFNYALGQAINGSMQSSAQMSNQILGQLMNIPPS  1891

Query  1793  FYKNEGDSIKILTMDDIDFSGVYDVKITNKSVVDEIIKQSTKTLSREHEEITTSPKGGN  1851
             FYKNEGDSIKILTMDDIDFSGVYDVKITNKSVVDEIIKQSTKTLSREHEEITTSPKGGN
Sbjct  1892  FYKNEGDSIKILTMDDIDFSGVYDVKITNKSVVDEIIKQSTKTLSREHEEITTSPKGGN  1950


 Score =  302 bits (1132),  Expect = 1e-82, Method: Compositional matrix adjust.
 Identities = 292/326 (90%), Positives = 302/326 (93%), Gaps = 0/326 (0%)

Query  1    MNEENDKLENSKKTQQHSPQDLSNEEATEANHFedsskeskessdHHLDNPTETKTNFDG  60
            MNEENDKLE SKKTQQHSPQDLSNEEATE NHFEDSSKESKESSD  LDNPTETKTNFDG
Sbjct  1    MNEENDKLETSKKTQQHSPQDLSNEEATEINHFEDSSKESKESSDPYLDNPTETKTNFDG  60

Query  61   YKSEETQTQMDsggnetsessngnLADKLFKKARKLVDDKRPFTQQKILDEEIQEPNEED  120
             KSEETQTQMDSGG+ETSESSNG+LADKLFKKARKLVD+KRPFTQQK LDEE QE NEED
Sbjct  61   DKSEETQTQMDSGGDETSESSNGSLADKLFKKARKLVDNKRPFTQQKNLDEETQELNEED  120

Query  121  DQESNGYQEETQMDLIDDETSKKTQQHSPQDLSNEEATEANHFedsskeskessdHHLDN  180
            DQE+NGYQEETQ +LIDDETSKKTQQHSPQDLSNEEATE NHFEDSSKESKESSD  LDN
Sbjct  121  DQENNGYQEETQTGLIDDETSKKTQQHSPQDLSNEEATEINHFEDSSKESKESSDPYLDN  180

Query  181  PTETKTNFDGYKSEETQTQMDsggnetsessngnLADKLFKKARKLVDDKRPFTQQKILD  240
            PTETKTNFDG KSEETQTQMDSGG+ETSESSNG+LADKLFKKARKLVD+KRPFTQQK LD
Sbjct  181  PTETKTNFDGDKSEETQTQMDSGGDETSESSNGSLADKLFKKARKLVDNKRPFTQQKNLD  240

Query  241  EEIQEPNEEDDQESNGYQEETQMDLIDDETSKKTQQHSPQDLSNEEATEANHFedsskes  300
            EE QE NEEDDQE+NGYQEETQ +LIDDETSKKTQQHSPQDLSNEEATE NHFEDSSKES
Sbjct  241  EETQELNEEDDQENNGYQEETQTGLIDDETSKKTQQHSPQDLSNEEATEINHFEDSSKES  300

Query  301  kessdHHLDNPTETKTNFDEYESEEI  326
            KESSD  LDNPTETKTNFD   SEE 
Sbjct  301  KESSDPYLDNPTETKTNFDGDKSEET  326

6) HPSH169_02700 in NC_017740


> JQ685133|1|G1|442739051|AGC69785.1|Helicobacter_pylori_J166_isolate_31063-2.8/rOut1|+|1..5853|cagY|-|cag 
pathogenicity island 
protein Y
Length=1950

 Score = 1925 bits (7311),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 1638/1889 (87%), Positives = 1702/1889 (91%), Gaps = 127/1889 (6%)

Query  9     ETSKKTQQHSPQDLSNEETTKANRFedsskeskessdHHLDNSTETKTNFDEEKSEETQT  68
             ETSKKTQQHSPQDLSNEE+T  N+FEDSSKESKESSD  LDN+TETKTNFD +KSEETQT
Sbjct  139   ETSKKTQQHSPQDLSNEEATEINHFEDSSKESKESSDPYLDNPTETKTNFDGDKSEETQT  198

Query  69    QMDSGGNETSESSN--LADKLFKKARKLVDNKRPFTQQKNLdeeiqepneeddqennGYQ  126
             QMDSGG+ETSESSN  LADKLFKKARKLVDNKRPFTQQKNLDEE QE NEEDDQENNGYQ
Sbjct  199   QMDSGGDETSESSNGSLADKLFKKARKLVDNKRPFTQQKNLDEETQELNEEDDQENNGYQ  258

Query  127   EETQMDLIDDETSKKTQQHSPQDLSNEETIKANHFedsskesnessdHHLDNSTETKTNF  186
             EETQ +LIDDETSKKTQQHSPQDLSNEE+   NHFEDSSKES+ESSD  LDN+TETKTNF
Sbjct  259   EETQTGLIDDETSKKTQQHSPQDLSNEEATEINHFEDSSKESKESSDPYLDNPTETKTNF  318

Query  187   DEYKSEETQTQMDSGGNETSESSN--LADKLFKKARKLVDNKRPFTQQKNLdeeiqepne  244
             D  KSEETQTQMDSGG+ETSESSN  LADKLFKKARKLVDNKRPFTQQKNLDEE QE NE
Sbjct  319   DGDKSEETQTQMDSGGDETSESSNGSLADKLFKKARKLVDNKRPFTQQKNLDEETQELNE  378

Query  245   eddqennGYQEETQMDLIDDETSKKTQQHSPQDLSNEETIKANHFedsskeskkssdHHL  304
             EDDQENNGYQEETQ +LIDDETSKKTQQHSPQDLSNEE+   NHFEDSSKESK SSD  L
Sbjct  379   EDDQENNGYQEETQTGLIDDETSKKTQQHSPQDLSNEEATEINHFEDSSKESKESSDPYL  438

Query  305   DNYTETKANFDEYKSEEITNDSNDQEiikgskkkyiiggivvavliviilFSRSIFHYFI  364
             DN TETK+NFDE KSEEITNDSNDQEIIKGSKKKYIIGGIVVAVLIVIILFSRSIFHYF+
Sbjct  439   DNPTETKTNFDEDKSEEITNDSNDQEIIKGSKKKYIIGGIVVAVLIVIILFSRSIFHYFM  498

Query  365   PLEDKSSRFSKDRNLYVNDEIQIRQEYNRLLKERNEKGNMIDKNLFFNDDPNRTLYNYLN  424
             PLEDKSSRFSKDRNLYVNDEIQIRQEYNRLLKERNEKGNMIDKNLFFNDDPNRTLYNYLN
Sbjct  499   PLEDKSSRFSKDRNLYVNDEIQIRQEYNRLLKERNEKGNMIDKNLFFNDDPNRTLYNYLN  558

Query  425   IAEIEDKNPLRAFYECISNGGNYEEClklikdkklqdqmkktlEAYNDCIKNAKTEEERI  484
             IAEIEDKNPLRAFYECISNGGNYEECLKLIKDKKLQDQMKKTLEAYNDCIKNAKTEEERI
Sbjct  559   IAEIEDKNPLRAFYECISNGGNYEECLKLIKDKKLQDQMKKTLEAYNDCIKNAKTEEERI  618

Query  485   KCLDLIKDENLKKSLLNQQKVQVALDCLKNAKTDEERNECLKLINDPEIrekfrkelelq  544
             KCLDLIKDENLKKSLLNQQKVQVALDCLKNAKTDEER+ECLKLINDPEIREKFRKELELQ
Sbjct  619   KCLDLIKDENLKKSLLNQQKVQVALDCLKNAKTDEERKECLKLINDPEIREKFRKELELQ  678

Query  545   kelqeYKDCIKNAKTEAEKNKCLKGLSKEAIERLKQQALDCLKNAKTDEERNECLKNIPQ  604
             KELQEYKDCIKNAKTEAEKN CLKGLSKEAIERLKQQALDCLKNAKTDEERNECLKNIPQ
Sbjct  679   KELQEYKDCIKNAKTEAEKNECLKGLSKEAIERLKQQALDCLKNAKTDEERNECLKNIPQ  738

Query  605   DLQKELLADMSVKAYKDCVSKARNEEERKACEKLLTPEAKKLLERQALDCLKNAKTEAEK  664
             DLQKELLADMSVKAYKDCVSKARNE E++ CEKLLTPEA+K LE+Q LDCLKNAKT+ E+
Sbjct  739   DLQKELLADMSVKAYKDCVSKARNEKEKQECEKLLTPEARKKLEQQVLDCLKNAKTDEER  798

Query  665   KRCVKDLPKDLQSDILAKESVKAYRDCVSQARTEAEKKECeklltpeakklleeeakeSV  724
             K+C+KDLPKDLQSDILAKESVKAY+DCVSQA+ EAEKKECEKLLTPEAKKLLEEEAKESV
Sbjct  799   KKCLKDLPKDLQSDILAKESVKAYKDCVSQAKNEAEKKECEKLLTPEAKKLLEEEAKESV  858

Query  725   KAYLDCVSQAktetekkeceklltPEARKKLEEAKKSVKAYLDCVSQAktetekkecekl  784
             KAYLDCVSQAKTE+EKKECEKLLTPEARKKLEEAKKSVKAYLDCVSQAK E EKKECEKL
Sbjct  859   KAYLDCVSQAKTEAEKKECEKLLTPEARKKLEEAKKSVKAYLDCVSQAKNEDEKKECEKL  918

Query  785   ltPEAKKLLEQQALDCLKNAKTEAEKKRCVKDLPKDLQKKVLAKESLKVYLDCVSQakte  844
             LTPEA+KLLEQQALDCLKNAKT+ E+K+C+KDLPKDLQKKVLAKES+K YLDCVSQAKTE
Sbjct  919   LTPEARKLLEQQALDCLKNAKTDEERKKCLKDLPKDLQKKVLAKESVKAYLDCVSQAKTE  978

Query  845   aekkeceklltpeakklleeakeslkaYKDCVSRARNEKEKQECEKLLTPEAKKLLEQQA  904
             AEKKECEKLLTPEA+KLLEEAKES+KAYKDCVS+ARNEKEK+ECEKLLTPEAKKLLE++A
Sbjct  979   AEKKECEKLLTPEARKLLEEAKESIKAYKDCVSKARNEKEKKECEKLLTPEAKKLLEEEA  1038

Query  905   -------LDCLKNAKTEAEKKRCVKDL-PKDLQKKVLAKESLKVYLDCVSQakteaekke  956
                    LDC+ +AKTEAEKK C K L P   +K   AK S+K YLDCVS          
Sbjct  1039  KESVKAYLDCVSQAKTEAEKKECEKLLTPEAKKKLEEAKKSVKAYLDCVS----------  1088

Query  957   ceklltpeakklleeakeslkaYKDCLSQARNEEERKACEKLLTPEARKLLEQEVKKSVK  1016
                                         QA+NE+E+K CEKLLTPEA+KLLEQ+      
Sbjct  1089  ----------------------------QAKNEDEKKECEKLLTPEAKKLLEQQA-----  1115

Query  1017  AYLDCVSQakteaekkeceklltPEARKLLEQQALDCLKNAKTEAEKKRCVKDLPKDLQK  1076
               LDC                                LKNAKTEA+KKRCVKDLPKDLQK
Sbjct  1116  --LDC--------------------------------LKNAKTEADKKRCVKDLPKDLQK  1141

Query  1077  KVLAKESVKAYLDCVSRARNEKEKQECeklltpeakklleeakeslkaYKDCVSQAR---  1133
             KVLAKESVKAY DCVSRARNEKEK+ECEKLLTPEAKKLLEEAK S+KAY DCVSQA+   
Sbjct  1142  KVLAKESVKAYKDCVSRARNEKEKKECEKLLTPEAKKLLEEAKKSVKAYLDCVSQAKTEA  1201

Query  1134  -----------------------------------NEEERKACEKLLTPEARKLLEQEVK  1158
                                                NEEER+ACEKLLTPEARKLLEQEVK
Sbjct  1202  EKKECEKLLTPEAKKLLEEAKESLKAYKDCLSQARNEEERRACEKLLTPEARKLLEQEVK  1261

Query  1159  KSVKAYLDCVSRARNEKEKQECEKLLTPEARKFLAKQALSCLEKARNEEERKACLKNIPK  1218
             KSVKAYLDCVS+A+ E EK+ECEKLLTPEARKFLAKQ L+CLEKA NEEERKACLKN+PK
Sbjct  1262  KSVKAYLDCVSQAKTEAEKKECEKLLTPEARKFLAKQVLNCLEKAGNEEERKACLKNLPK  1321

Query  1219  DLQKNVLAKESLKAYKDCLSQARNEEERKACEKLLTPEARKLLEQEVKKSVKAYLDCVSR  1278
             DLQ NVLAKESLKAYKDCLSQARNEEER+ACEKLLTPEARKLLEQEVKKSVKAYLDCVSR
Sbjct  1322  DLQENVLAKESLKAYKDCLSQARNEEERRACEKLLTPEARKLLEQEVKKSVKAYLDCVSR  1381

Query  1279  ARNEKEKQECEKLLTPEARKFLAKELQQKDKAIKDCLKNADPNDRAAIMKCLDGLSDEEK  1338
             ARNEKEK+ECEKLLTPEARKFLAKELQQKDKAIKDCLKNADPNDRAAIMKCLDGLSDEEK
Sbjct  1382  ARNEKEKKECEKLLTPEARKFLAKELQQKDKAIKDCLKNADPNDRAAIMKCLDGLSDEEK  1441

Query  1339  LKYLQEAREKAVLDCLKTARSDEEKRKCQNLYSDLIQEIQNKRTQSKQNQLSKTERLHQA  1398
             LKYLQEAREKAVLDCLKTAR+DEEKRKCQNLYSDLIQEIQNKRTQSKQNQLSKTERLHQA
Sbjct  1442  LKYLQEAREKAVLDCLKTARTDEEKRKCQNLYSDLIQEIQNKRTQSKQNQLSKTERLHQA  1501

Query  1399  SECLDNLDDPTDQEAIEQCLEGLSDSERALILGIKRQADEVDLIYSDLRNRKTFDNMAAK  1458
             SECLDNLDDPTDQ+AIEQCLEGLSDSERALILGIKRQADEVD IYSDLRNRKTFDNMAAK
Sbjct  1502  SECLDNLDDPTDQQAIEQCLEGLSDSERALILGIKRQADEVDRIYSDLRNRKTFDNMAAK  1561

Query  1459  GYPLLPMDFKNGGDIATINATNVDADKIASDNPIYASIEPDITKQYETEKTIkdknleak  1518
             GYPLLPMDFKNGGDIATINATNVDADKIASDNPIYASIEPDITKQYETEKTIKDKNLEAK
Sbjct  1562  GYPLLPMDFKNGGDIATINATNVDADKIASDNPIYASIEPDITKQYETEKTIKDKNLEAK  1621

Query  1519  lakalggnkkdddkekskksTAEARVESNKIDKDVAETAKNISEIALKNKKEKSGEFVDE  1578
             LAKALGGNKKDDDKEKSKKSTAEA+VESNKIDKDVAETAKNISEIALKNKKEK+GEFVDE
Sbjct  1622  LAKALGGNKKDDDKEKSKKSTAEAKVESNKIDKDVAETAKNISEIALKNKKEKNGEFVDE  1681

Query  1579  NGNPIddkkktekqdetSPVKQAFIGKSDPTFVLAQYTPIEITLTSKVDATLTGIVSGVV  1638
             NGNPIDDKKK+EKQDETSPVKQAFIGKSDPTFVLAQYTPIEITLTSKVDATLTGIVSGVV
Sbjct  1682  NGNPIDDKKKAEKQDETSPVKQAFIGKSDPTFVLAQYTPIEITLTSKVDATLTGIVSGVV  1741

Query  1639  AKDVWNMNGTMILLDKGTKVYGNYQSVKGGTPIMTRLMIVFTKAITPDGVIIPLANAQAA  1698
             AKDVWNMNGTMILLDKGTKVYGNYQSVKGGTPIMTRLMIVFTKAITPDGVIIPLANAQAA
Sbjct  1742  AKDVWNMNGTMILLDKGTKVYGNYQSVKGGTPIMTRLMIVFTKAITPDGVIIPLANAQAA  1801

Query  1699  GMLGEAGVDGYVNNHFMKRIGFAVIASVVNSFLQTAPIIALDKLIGLGKGRSERTPEFNY  1758
             GMLGEAGVDGYVNNHFMKRIGFAVIASVVNSFLQTAPIIALDKLIGLGKGRSERTPEFNY
Sbjct  1802  GMLGEAGVDGYVNNHFMKRIGFAVIASVVNSFLQTAPIIALDKLIGLGKGRSERTPEFNY  1861

Query  1759  ALGQAINGSMQSSAQMSNQILGQLMNIPPSFYKNEGDSIKILTMDDIDFSGVYDVKITNK  1818
             ALGQAINGSMQSSAQMSNQILGQLMNIPPSFYKNEGDSIKILTMDDIDFSGVYDVKITNK
Sbjct  1862  ALGQAINGSMQSSAQMSNQILGQLMNIPPSFYKNEGDSIKILTMDDIDFSGVYDVKITNK  1921

Query  1819  SVVDEIIKQSTKTLSREHEEITTSPKGGN  1847
             SVVDEIIKQSTKTLSREHEEITTSPKGGN
Sbjct  1922  SVVDEIIKQSTKTLSREHEEITTSPKGGN  1950


 Score =  274 bits (1025),  Expect = 3e-74, Method: Compositional matrix adjust.
 Identities = 281/326 (87%), Positives = 294/326 (91%), Gaps = 4/326 (1%)

Query  1    MNEENDKLETSKKTQQHSPQDLSNEETTKANRFedsskeskessdHHLDNSTETKTNFDE  60
            MNEENDKLETSKKTQQHSPQDLSNEE+T  N+FEDSSKESKESSD  LDN+TETKTNFD 
Sbjct  1    MNEENDKLETSKKTQQHSPQDLSNEEATEINHFEDSSKESKESSDPYLDNPTETKTNFDG  60

Query  61   EKSEETQTQMDSGGNETSESSN--LADKLFKKARKLVDNKRPFTQQKNLdeeiqepneed  118
            +KSEETQTQMDSGG+ETSESSN  LADKLFKKARKLVDNKRPFTQQKNLDEE QE NEED
Sbjct  61   DKSEETQTQMDSGGDETSESSNGSLADKLFKKARKLVDNKRPFTQQKNLDEETQELNEED  120

Query  119  dqennGYQEETQMDLIDDETSKKTQQHSPQDLSNEETIKANHFedsskesnessdHHLDN  178
            DQENNGYQEETQ +LIDDETSKKTQQHSPQDLSNEE+   NHFEDSSKES+ESSD  LDN
Sbjct  121  DQENNGYQEETQTGLIDDETSKKTQQHSPQDLSNEEATEINHFEDSSKESKESSDPYLDN  180

Query  179  STETKTNFDEYKSEETQTQMDSGGNETSESSN--LADKLFKKARKLVDNKRPFTQQKNLd  236
            +TETKTNFD  KSEETQTQMDSGG+ETSESSN  LADKLFKKARKLVDNKRPFTQQKNLD
Sbjct  181  PTETKTNFDGDKSEETQTQMDSGGDETSESSNGSLADKLFKKARKLVDNKRPFTQQKNLD  240

Query  237  eeiqepneeddqennGYQEETQMDLIDDETSKKTQQHSPQDLSNEETIKANHFedsskes  296
            EE QE NEEDDQENNGYQEETQ +LIDDETSKKTQQHSPQDLSNEE+   NHFEDSSKES
Sbjct  241  EETQELNEEDDQENNGYQEETQTGLIDDETSKKTQQHSPQDLSNEEATEINHFEDSSKES  300

Query  297  kkssdHHLDNYTETKANFDEYKSEEI  322
            K SSD  LDN TETK+NFD  KSEE 
Sbjct  301  KESSDPYLDNPTETKTNFDGDKSEET  326

7) HPSH417_02515 in NC_017739


> JQ685133|1|G1|442739051|AGC69785.1|Helicobacter_pylori_J166_isolate_31063-2.8/rOut1|+|1..5853|cagY|-|cag 
pathogenicity island 
protein Y
Length=1950

 Score = 1852 bits (7035),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 1579/1720 (92%), Positives = 1633/1720 (95%), Gaps = 40/1720 (2%)

Query  9     ETSKKTQQHSPQDLSNEETIKANHFedsskeskkssdHHLDNSTETKTNFDEYKSEETQT  68
             ETSKKTQQHSPQDLSNEE+   NHFEDSSKESK SSD  LDN+TETKTNFD  KSEETQT
Sbjct  269   ETSKKTQQHSPQDLSNEEATEINHFEDSSKESKESSDPYLDNPTETKTNFDGDKSEETQT  328

Query  69    QMDSGGNETSESSN--LADKLFKKARKLVDNKRPFTQQKNLdeeiqepneeddqennGYQ  126
             QMDSGG+ETSESSN  LADKLFKKARKLVDNKRPFTQQKNLDEE QE NEEDDQENNGYQ
Sbjct  329   QMDSGGDETSESSNGSLADKLFKKARKLVDNKRPFTQQKNLDEETQELNEEDDQENNGYQ  388

Query  127   EETQMDLIDDETSKKTQQHSPQDLSNEETIKANHFedsskeskkssdHHLDNYTETKTNF  186
             EETQ +LIDDETSKKTQQHSPQDLSNEE+   NHFEDSSKESK SSD  LDN TETKTNF
Sbjct  389   EETQTGLIDDETSKKTQQHSPQDLSNEEATEINHFEDSSKESKESSDPYLDNPTETKTNF  448

Query  187   DGEKSEEITNDSNDQEiikgskkkyiiggivvavliviilFSRSIFHYFIPLEDKSSRFS  246
             D +KSEEITNDSNDQEIIKGSKKKYIIGGIVVAVLIVIILFSRSIFHYF+PLEDKSSRFS
Sbjct  449   DEDKSEEITNDSNDQEIIKGSKKKYIIGGIVVAVLIVIILFSRSIFHYFMPLEDKSSRFS  508

Query  247   KDRNLYVNDEIQIRQEYNRLLKERNEKGNMIDKNLFFNDDPNRTLYNYLNIAEIEDKNPL  306
             KDRNLYVNDEIQIRQEYNRLLKERNEKGNMIDKNLFFNDDPNRTLYNYLNIAEIEDKNPL
Sbjct  509   KDRNLYVNDEIQIRQEYNRLLKERNEKGNMIDKNLFFNDDPNRTLYNYLNIAEIEDKNPL  568

Query  307   RAFYECISNGGNYEEClklikdkklqdqmkktlEAYNDCIKNAKTEEERIKCLDLIKDEN  366
             RAFYECISNGGNYEECLKLIKDKKLQDQMKKTLEAYNDCIKNAKTEEERIKCLDLIKDEN
Sbjct  569   RAFYECISNGGNYEECLKLIKDKKLQDQMKKTLEAYNDCIKNAKTEEERIKCLDLIKDEN  628

Query  367   LKKSLLNQQKVQVALDCLKNAKTDEERNECLKLINDPEIrekfrkelelqkelqeYKDCI  426
             LKKSLLNQQKVQVALDCLKNAKTDEER+ECLKLINDPEIREKFRKELELQKELQEYKDCI
Sbjct  629   LKKSLLNQQKVQVALDCLKNAKTDEERKECLKLINDPEIREKFRKELELQKELQEYKDCI  688

Query  427   KNAKTEAEKNKCLKGLSKEAIERLKQQALDCLKNAKTDEERNECLKNIPQDLQKELLADM  486
             KNAKTEAEKN CLKGLSKEAIERLKQQALDCLKNAKTDEERNECLKNIPQDLQKELLADM
Sbjct  689   KNAKTEAEKNECLKGLSKEAIERLKQQALDCLKNAKTDEERNECLKNIPQDLQKELLADM  748

Query  487   SVKAYKDCVSKARNEEERKACEKLLTPEAKKLLERQALDCLKNAKTEAEKKRCVKDLPKD  546
             SVKAYKDCVSKARNE E++ CEKLLTPEA+K LE+Q LDCLKNAKT+ E+K+C+KDLPKD
Sbjct  749   SVKAYKDCVSKARNEKEKQECEKLLTPEARKKLEQQVLDCLKNAKTDEERKKCLKDLPKD  808

Query  547   LQSDILAKESVKAYRDCVSQARTEAEKKECeklltpeakklleeeakeSVKAYLDCVSQA  606
             LQSDILAKESVKAY+DCVSQA+ EAEKKECEKLLTPEAKKLLEEEAKESVKAYLDCVSQA
Sbjct  809   LQSDILAKESVKAYKDCVSQAKNEAEKKECEKLLTPEAKKLLEEEAKESVKAYLDCVSQA  868

Query  607   ktetekkeceklltPEARKKLEEAKKSVKAYLDCVSQAktetekkeceklltPEAKKLLE  666
             KTE+EKKECEKLLTPEARKKLEEAKKSVKAYLDCVSQAK E EKKECEKLLTPEA+KLLE
Sbjct  869   KTEAEKKECEKLLTPEARKKLEEAKKSVKAYLDCVSQAKNEDEKKECEKLLTPEARKLLE  928

Query  667   QQALDCLKNAKTEAEKKRCVKDLPKDLQKKVLAKESLKAYKDCVSRARNekekkecekll  726
             QQALDCLKNAKT+ E+K+C+KDLPKDLQKKVLAKES+KAY DCVS+A+ E EKKECEKLL
Sbjct  929   QQALDCLKNAKTDEERKKCLKDLPKDLQKKVLAKESVKAYLDCVSQAKTEAEKKECEKLL  988

Query  727   tpeakklleeakeslkaYKDCVSQARTEAEKKECeklltpeakklleeeakeSVKAYLDC  786
             TPEA+KLLEEAKES+KAYKDCVS+AR E EKKECEKLLTPEAKKLLEEEAKESVKAYLDC
Sbjct  989   TPEARKLLEEAKESIKAYKDCVSKARNEKEKKECEKLLTPEAKKLLEEEAKESVKAYLDC  1048

Query  787   ISQAktetekkeceklltPEARKKLEEAKKSVKAYLDCVSQAktetekkeceklltPEAK  846
             +SQAKTE+EKKECEKLLTPEA+KKLEEAKKSVKAYLDCVSQAK E EKKECEKLLTPEAK
Sbjct  1049  VSQAKTEAEKKECEKLLTPEAKKKLEEAKKSVKAYLDCVSQAKNEDEKKECEKLLTPEAK  1108

Query  847   KLLEQQALDCLKNAKTEAEKKRCVKDLPKDLQKKVLAKESLKAYKDCVSRARNekekkec  906
             KLLEQQALDCLKNAKTEA+KKRCVKDLPKDLQKKVLAKES+KA                 
Sbjct  1109  KLLEQQALDCLKNAKTEADKKRCVKDLPKDLQKKVLAKESVKA-----------------  1151

Query  907   eklltpeakklleeakeslkaYKDCVSQARNEEERKACEKLLTPEARKKLEEAKKSVKAY  966
                                  YKDCVS+ARNE E+K CEKLLTPEA+K LEEAKKSVKAY
Sbjct  1152  ---------------------YKDCVSRARNEKEKKECEKLLTPEAKKLLEEAKKSVKAY  1190

Query  967   LDCVSRARNekekkeceklltpeakklleeakeslkaYKDCLSQARNEEERKACEKLLTP  1026
             LDCVS+A+ E EKKECEKLLTPEAKKLLEEAKESLKAYKDCLSQARNEEER+ACEKLLTP
Sbjct  1191  LDCVSQAKTEAEKKECEKLLTPEAKKLLEEAKESLKAYKDCLSQARNEEERRACEKLLTP  1250

Query  1027  EARKLLEQEVKKSVKAYLDCVSRARNEKEKQECEKLLTPEARKFLAKQALSCLEKARNEE  1086
             EARKLLEQEVKKSVKAYLDCVS+A+ E EK+ECEKLLTPEARKFLAKQ L+CLEKA NEE
Sbjct  1251  EARKLLEQEVKKSVKAYLDCVSQAKTEAEKKECEKLLTPEARKFLAKQVLNCLEKAGNEE  1310

Query  1087  ERKACLKNIPKDLQKDVLAKESLKAYKDCLSQARNEEERKACEKLLTPEARKLLEQEVKK  1146
             ERKACLKN+PKDLQ +VLAKESLKAYKDCLSQARNEEER+ACEKLLTPEARKLLEQEVKK
Sbjct  1311  ERKACLKNLPKDLQENVLAKESLKAYKDCLSQARNEEERRACEKLLTPEARKLLEQEVKK  1370

Query  1147  SVKAYLDCVSRARNEKEKQECEKLLTPEARKFLAKELQQKDKAIKDCLKNADPNDRAAIM  1206
             SVKAYLDCVSRARNEKEK+ECEKLLTPEARKFLAKELQQKDKAIKDCLKNADPNDRAAIM
Sbjct  1371  SVKAYLDCVSRARNEKEKKECEKLLTPEARKFLAKELQQKDKAIKDCLKNADPNDRAAIM  1430

Query  1207  KCLDGLSDEEKLKYLQEAREKAVLDCLKTARTDEEKRKCQNLYSDLIQEIQNKRAQSKQN  1266
             KCLDGLSDEEKLKYLQEAREKAVLDCLKTARTDEEKRKCQNLYSDLIQEIQNKR+QSKQN
Sbjct  1431  KCLDGLSDEEKLKYLQEAREKAVLDCLKTARTDEEKRKCQNLYSDLIQEIQNKRTQSKQN  1490

Query  1267  QLSKTERLHQASECLDNLDDPTDQEAIEQCLEGLSDSERALILGIKRQADEVDLIYSDLR  1326
             QLSKTERLHQASECLDNLDDPTDQ+AIEQCLEGLSDSERALILGIKRQADEVD IYSDLR
Sbjct  1491  QLSKTERLHQASECLDNLDDPTDQQAIEQCLEGLSDSERALILGIKRQADEVDRIYSDLR  1550

Query  1327  NRKTFDNMAAKGYPLLPMDFKNGGDIATINATNVDADKIASDNPIYASIEPDITKQYETE  1386
             NRKTFDNMAAKGYPLLPMDFKNGGDIATINATNVDADKIASDNPIYASIEPDITKQYETE
Sbjct  1551  NRKTFDNMAAKGYPLLPMDFKNGGDIATINATNVDADKIASDNPIYASIEPDITKQYETE  1610

Query  1387  KTIkdknleaklakalggnkkdddkekskksTAEARVESNKIDKDVAETAKNISEIALKN  1446
             KTIKDKNLEAKLAKALGGNKKDDDKEKSKKSTAEA+VESNKIDKDVAETAKNISEIALKN
Sbjct  1611  KTIKDKNLEAKLAKALGGNKKDDDKEKSKKSTAEAKVESNKIDKDVAETAKNISEIALKN  1670

Query  1447  KKEKSGEFVDENGNPIddkkktekqdetSPVKQAFIGKSDPTFVLAQYTPIEITLTSKVD  1506
             KKEK+GEFVDENGNPIDDKKK+EKQDETSPVKQAFIGKSDPTFVLAQYTPIEITLTSKVD
Sbjct  1671  KKEKNGEFVDENGNPIDDKKKAEKQDETSPVKQAFIGKSDPTFVLAQYTPIEITLTSKVD  1730

Query  1507  ATLTGIVSGVVAKDVWNMNGTMILLDKGTKVYGNYQSVKGGTPIMTRLMIVFTKAITPDG  1566
             ATLTGIVSGVVAKDVWNMNGTMILLDKGTKVYGNYQSVKGGTPIMTRLMIVFTKAITPDG
Sbjct  1731  ATLTGIVSGVVAKDVWNMNGTMILLDKGTKVYGNYQSVKGGTPIMTRLMIVFTKAITPDG  1790

Query  1567  VIIPLANAQAAGMLGEAGVDGYVNNHFMKRIGFAVIASVVNSFLQTAPIIALDKLIGLGK  1626
             VIIPLANAQAAGMLGEAGVDGYVNNHFMKRIGFAVIASVVNSFLQTAPIIALDKLIGLGK
Sbjct  1791  VIIPLANAQAAGMLGEAGVDGYVNNHFMKRIGFAVIASVVNSFLQTAPIIALDKLIGLGK  1850

Query  1627  GRSERTPEFNYALGQAINGSMQSSAQMSNQILGQLMNIPPSFYKNEGDSIKILTMDDIDF  1686
             GRSERTPEFNYALGQAINGSMQSSAQMSNQILGQLMNIPPSFYKNEGDSIKILTMDDIDF
Sbjct  1851  GRSERTPEFNYALGQAINGSMQSSAQMSNQILGQLMNIPPSFYKNEGDSIKILTMDDIDF  1910

Query  1687  SGVYDVKITNKSVVDEIIKQSTKTLSREHEEITTSPKGGN  1726
             SGVYDVKITNKSVVDEIIKQSTKTLSREHEEITTSPKGGN
Sbjct  1911  SGVYDVKITNKSVVDEIIKQSTKTLSREHEEITTSPKGGN  1950


 Score =  169 bits (624),  Expect = 1e-42, Method: Compositional matrix adjust.
 Identities = 169/199 (85%), Positives = 176/199 (89%), Gaps = 2/199 (1%)

Query  1    MNEENDKLETSKKTQQHSPQDLSNEETIKANHFedsskeskkssdHHLDNSTETKTNFDE  60
            MNEENDKLETSKKTQQHSPQDLSNEE+   NHFEDSSKESK SSD  LDN+TETKTNFD 
Sbjct  1    MNEENDKLETSKKTQQHSPQDLSNEEATEINHFEDSSKESKESSDPYLDNPTETKTNFDG  60

Query  61   YKSEETQTQMDSGGNETSESSN--LADKLFKKARKLVDNKRPFTQQKNLdeeiqepneed  118
             KSEETQTQMDSGG+ETSESSN  LADKLFKKARKLVDNKRPFTQQKNLDEE QE NEED
Sbjct  61   DKSEETQTQMDSGGDETSESSNGSLADKLFKKARKLVDNKRPFTQQKNLDEETQELNEED  120

Query  119  dqennGYQEETQMDLIDDETSKKTQQHSPQDLSNEETIKANHFedsskeskkssdHHLDN  178
            DQENNGYQEETQ +LIDDETSKKTQQHSPQDLSNEE+   NHFEDSSKESK SSD  LDN
Sbjct  121  DQENNGYQEETQTGLIDDETSKKTQQHSPQDLSNEEATEINHFEDSSKESKESSDPYLDN  180

Query  179  YTETKTNFDGEKSEEITND  197
             TETKTNFDG+KSEE   +
Sbjct  181  PTETKTNFDGDKSEETQTQ  199


 Score =  158 bits (585),  Expect = 2e-39, Method: Compositional matrix adjust.
 Identities = 161/191 (85%), Positives = 168/191 (88%), Gaps = 2/191 (1%)

Query  9    ETSKKTQQHSPQDLSNEETIKANHFedsskeskkssdHHLDNSTETKTNFDEYKSEETQT  68
            ETSKKTQQHSPQDLSNEE+   NHFEDSSKESK SSD  LDN+TETKTNFD  KSEETQT
Sbjct  139  ETSKKTQQHSPQDLSNEEATEINHFEDSSKESKESSDPYLDNPTETKTNFDGDKSEETQT  198

Query  69   QMDSGGNETSESSN--LADKLFKKARKLVDNKRPFTQQKNLdeeiqepneeddqennGYQ  126
            QMDSGG+ETSESSN  LADKLFKKARKLVDNKRPFTQQKNLDEE QE NEEDDQENNGYQ
Sbjct  199  QMDSGGDETSESSNGSLADKLFKKARKLVDNKRPFTQQKNLDEETQELNEEDDQENNGYQ  258

Query  127  EETQMDLIDDETSKKTQQHSPQDLSNEETIKANHFedsskeskkssdHHLDNYTETKTNF  186
            EETQ +LIDDETSKKTQQHSPQDLSNEE+   NHFEDSSKESK SSD  LDN TETKTNF
Sbjct  259  EETQTGLIDDETSKKTQQHSPQDLSNEEATEINHFEDSSKESKESSDPYLDNPTETKTNF  318

Query  187  DGEKSEEITND  197
            DG+KSEE   +
Sbjct  319  DGDKSEETQTQ  329

8) HPKB_0815 in NC_017354


> JQ685133|1|G1|442739051|AGC69785.1|Helicobacter_pylori_J166_isolate_31063-2.8/rOut1|+|1..5853|cagY|-|cag 
pathogenicity island 
protein Y
Length=1950

 Score = 1336 bits (5069),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 1103/1389 (80%), Positives = 1183/1389 (86%), Gaps = 110/1389 (7%)

Query  600   NECLKNIPQD-LQKELLADMSVKAYKDCVSRARNekekkecekLLTPEAKKK--LEQQ--  654
             +ECLK I +  LQ ++    ++ AY+DC+  A+ E E+  C  L+  E  KK  L+QQ  
Sbjct  582   EECLKLIKDKKLQDQM--KKTLEAYNDCIKNAKTEEERIKCLDLIKDENLKKSLLNQQKV  639

Query  655   --VLDCLKNAKTDEERKKCLK-----DLPKDLQSDILAKESVKAYKDCVSQakteaekke  707
                LDCLKNAKTDEERK CLK     ++   ++ ++  +  ++ YKDC+ +AKTEAEK+E
Sbjct  640   QVALDCLKNAKTDEERKECLKLINDPEIREKFRKELELQKELQEYKDCIKNAKTEAEKNE  699

Query  708   ceklltpeakklleeeakeSVKAYLDCVSQARTEAEKKECeklltpeakkkleeakksvk  767
             C K L+ EA   L ++A       LDC+ +A+T+ E++EC K +  + +K L        
Sbjct  700   CLKGLSKEAIERLKQQA-------LDCLKNAKTDEERNECLKNIPQDLQKELLADMSVKA  752

Query  768   aYLDCVSQARTEAEKKECEKLLTPEAKKLLEQQVLDCLKNAKTDEERKKCLKDLPKDLQK  827
              Y DCVS+AR E EK+ECEKLLTPEA+K LEQQVLDCLKNAKTDEERKKCLKDLPKDLQ 
Sbjct  753   -YKDCVSKARNEKEKQECEKLLTPEARKKLEQQVLDCLKNAKTDEERKKCLKDLPKDLQS  811

Query  828   KVLAK---------------------------------------ESVKAYLDCVSQakte  848
              +LAK                                       ESVKAYLDCVSQAKTE
Sbjct  812   DILAKESVKAYKDCVSQAKNEAEKKECEKLLTPEAKKLLEEEAKESVKAYLDCVSQAKTE  871

Query  849   aekkeceklltpeakklleeakeslkaYKDCVSRARNekekkeceklltpeakklleeea  908
             AEKKECEKLLTPEA+K LEEAK S+KAY DCVS+A+NE EKKECEKLLTPEA+KLLE++A
Sbjct  872   AEKKECEKLLTPEARKKLEEAKKSVKAYLDCVSQAKNEDEKKECEKLLTPEARKLLEQQA  931

Query  909   keSVKAYLDCVSQARTEAEKKECeklltpeakkkleeakksvkaYLDCVSQARTEAEKKE  968
                    LDC+ +A+T+ E+K C K L  + +KK+         YLDCVSQA+TEAEKKE
Sbjct  932   -------LDCLKNAKTDEERKKCLKDLPKDLQKKVLAKESVKA-YLDCVSQAKTEAEKKE  983

Query  969   CEKLLTPEARKLLEQEVKKSVKAYLDCVSRARNEKERKACEKLLTPEARKKLEE-AKKSV  1027
             CEKLLTPEARKLLE E K S+KAY DCVS+ARNEKE+K CEKLLTPEA+K LEE AK SV
Sbjct  984   CEKLLTPEARKLLE-EAKESIKAYKDCVSKARNEKEKKECEKLLTPEAKKLLEEEAKESV  1042

Query  1028  KAYLDCVSQARTEAEKKECEKLLTPEARKLLEQEVKKSVKAYLDCVSRARNEKEKQECEK  1087
             KAYLDCVSQA+TEAEKKECEKLLTPEA+K   +E KKSVKAYLDCVS+A+NE EK+ECEK
Sbjct  1043  KAYLDCVSQAKTEAEKKECEKLLTPEAKKK-LEEAKKSVKAYLDCVSQAKNEDEKKECEK  1101

Query  1088  LLTPEAKKFLEQQALDCLKNAKTETEKKRCVKDLPKDLQKKVLAKESVKAY---------  1138
             LLTPEAKK+LEQQALDCLKNAKTE++KKRCVKDLPKDLQKKVLAKESVKAY         
Sbjct  1102  LLTPEAKKLLEQQALDCLKNAKTEADKKRCVKDLPKDLQKKVLAKESVKAYKDCVSRARN  1161

Query  1139  -----------------------------LDCVSRARNEKERKACeklltpeakklleea  1169
                                          LDCVS+A+ E E+K CEKLLTPEAKKLLEEA
Sbjct  1162  EKEKKECEKLLTPEAKKLLEEAKKSVKAYLDCVSQAKTEAEKKECEKLLTPEAKKLLEEA  1221

Query  1170  keslkaYKDCLSQARNEEERKACEKLLTPEARKLLEQEVKKSVKAYLDCVSRARNEKEKQ  1229
             KESLKAYKDCLSQARNEEER+ACEKLLTPEARKLLEQEVKKSVKAYLDCVS+A+ E EK+
Sbjct  1222  KESLKAYKDCLSQARNEEERRACEKLLTPEARKLLEQEVKKSVKAYLDCVSQAKTEAEKK  1281

Query  1230  ECEKLLTPEARKFLAKQVLNCLEKAGNEEERKACLKNLPKDLQENVLAKESLKAYKDCLS  1289
             ECEKLLTPEARKFLAKQVLNCLEKAGNEEERKACLKNLPKDLQENVLAKESLKAYKDCLS
Sbjct  1282  ECEKLLTPEARKFLAKQVLNCLEKAGNEEERKACLKNLPKDLQENVLAKESLKAYKDCLS  1341

Query  1290  QARNEEERRACEKLLTPEARKLLEQEVKKSVKAYLDCVSRARNEKEKQECEKLLTPEARK  1349
             QARNEEERRACEKLLTPEARKLLEQEVKKSVKAYLDCVSRARNEKEK+ECEKLLTPEARK
Sbjct  1342  QARNEEERRACEKLLTPEARKLLEQEVKKSVKAYLDCVSRARNEKEKKECEKLLTPEARK  1401

Query  1350  FLAKELQQKDKAIKDCLKNADPNDRAAIMKCLDGLSDEEKLKYLQEAREKAVLDCLKTAR  1409
             FLAKELQQKDKAIKDCLKNADPNDRAAIMKCLDGLSDEEKLKYLQEAREKAVLDCLKTAR
Sbjct  1402  FLAKELQQKDKAIKDCLKNADPNDRAAIMKCLDGLSDEEKLKYLQEAREKAVLDCLKTAR  1461

Query  1410  TDEEKRKCQNLYSDLIQEIQNKRTQSKQNQLSKTERLHQASECLDNLDDPTDQEAIEQCL  1469
             TDEEKRKCQNLYSDLIQEIQNKRTQSKQNQLSKTERLHQASECLDNLDDPTDQ+AIEQCL
Sbjct  1462  TDEEKRKCQNLYSDLIQEIQNKRTQSKQNQLSKTERLHQASECLDNLDDPTDQQAIEQCL  1521

Query  1470  EGLSDSERALILGIKRQADEVDLIYSDLRNRKTFDNMAAKGYPLLPMDFKNGGDIATINA  1529
             EGLSDSERALILGIKRQADEVD IYSDLRNRKTFDNMAAKGYPLLPMDFKNGGDIATINA
Sbjct  1522  EGLSDSERALILGIKRQADEVDRIYSDLRNRKTFDNMAAKGYPLLPMDFKNGGDIATINA  1581

Query  1530  TNVDADKIASDNPIYASIEPDITKQYETEKTIkdknleaklakalggnkkdddkekskks  1589
             TNVDADKIASDNPIYASIEPDITKQYETEKTIKDKNLEAKLAKALGGNKKDDDKEKSKKS
Sbjct  1582  TNVDADKIASDNPIYASIEPDITKQYETEKTIKDKNLEAKLAKALGGNKKDDDKEKSKKS  1641

Query  1590  taeskvesNKIDKDVAETAKNISEIALKNKKEKSGEFVDENGNPIDDKKKAEKQDETSPV  1649
             TAE+KVESNKIDKDVAETAKNISEIALKNKKEK+GEFVDENGNPIDDKKKAEKQDETSPV
Sbjct  1642  TAEAKVESNKIDKDVAETAKNISEIALKNKKEKNGEFVDENGNPIDDKKKAEKQDETSPV  1701

Query  1650  KQAFIGKSDPTFVLAQYTPIEITLTSKVDATLTGIVSGVVAKDVWNMNGTMILLDKGTKV  1709
             KQAFIGKSDPTFVLAQYTPIEITLTSKVDATLTGIVSGVVAKDVWNMNGTMILLDKGTKV
Sbjct  1702  KQAFIGKSDPTFVLAQYTPIEITLTSKVDATLTGIVSGVVAKDVWNMNGTMILLDKGTKV  1761

Query  1710  YGNYQSVKGGTPIMTRLMIVFTKAITPDGVIIPLANAQAAGMLGEAGVDGYVNNHFMKRI  1769
             YGNYQSVKGGTPIMTRLMIVFTKAITPDGVIIPLANAQAAGMLGEAGVDGYVNNHFMKRI
Sbjct  1762  YGNYQSVKGGTPIMTRLMIVFTKAITPDGVIIPLANAQAAGMLGEAGVDGYVNNHFMKRI  1821

Query  1770  GFAVIASVVNSFLQTAPIIALDKLIGLGKGRSERTPEFNYALGQAINGSMQSSAQMSNQI  1829
             GFAVIASVVNSFLQTAPIIALDKLIGLGKGRSERTPEFNYALGQAINGSMQSSAQMSNQI
Sbjct  1822  GFAVIASVVNSFLQTAPIIALDKLIGLGKGRSERTPEFNYALGQAINGSMQSSAQMSNQI  1881

Query  1830  LGQLMNIPPSFYKNEGDSIKILTMDDIDFSGVYDVKITNKSVVDEIIKQSTKTLSREHEE  1889
             LGQLMNIPPSFYKNEGDSIKILTMDDIDFSGVYDVKITNKSVVDEIIKQSTKTLSREHEE
Sbjct  1882  LGQLMNIPPSFYKNEGDSIKILTMDDIDFSGVYDVKITNKSVVDEIIKQSTKTLSREHEE  1941

Query  1890  ITTSPKGGN  1898
             ITTSPKGGN
Sbjct  1942  ITTSPKGGN  1950


 Score = 1151 bits (4366),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 1138/1460 (78%), Positives = 1219/1460 (84%), Gaps = 148/1460 (10%)

Query  9     ETSKKTQQHSPQDLSNEETTEANHFEDsskeskesPDHHLDNPTETKTNFDEYESEETQT  68
             ETSKKTQQHSPQDLSNEE+TE NHFEDSSKESKES+D  LDNPTETKTNFD   SEETQT
Sbjct  139   ETSKKTQQHSPQDLSNEEATEINHFEDSSKESKESSDPYLDNPTETKTNFDGDKSEETQT  198

Query  69    QMDFggnetsessngsLADKLFKKARKLVDDKRPFTQQKNLdeeiqepneeddqennGYQ  128
             QMD GG+ETSESSNGSLADKLFKKARKLVD+KRPFTQQKNLDEE QE NEEDDQENNGYQ
Sbjct  199   QMDSGGDETSESSNGSLADKLFKKARKLVDNKRPFTQQKNLDEETQELNEEDDQENNGYQ  258

Query  129   EETQMDLIDDETSKKTQQHSPQDLSNEETTEANHFEDsskeskesPDHHLDNPTETKTNF  188
             EETQ +LIDDETSKKTQQHSPQDLSNEE+TE NHFEDSSKESKES+D  LDNPTETKTNF
Sbjct  259   EETQTGLIDDETSKKTQQHSPQDLSNEEATEINHFEDSSKESKESSDPYLDNPTETKTNF  318

Query  189   DEYESEETQTQMDFggnetsessngsLADKLFKKARKLVDDKRPFTQQKNLdeeiqepne  248
             D   SEETQTQMD GG+ETSESSNGSLADKLFKKARKLVD+KRPFTQQKNLDEE QE NE
Sbjct  319   DGDKSEETQTQMDSGGDETSESSNGSLADKLFKKARKLVDNKRPFTQQKNLDEETQELNE  378

Query  249   eddqennGYQEETQMDLIDDETSKKTQQHSPQDLSNEETTEANHFEDsskeskesPDHHL  308
             EDDQENNGYQEETQ +LIDDETSKKTQQHSPQDLSNEE+TE NHFEDSSKESKES+D  L
Sbjct  379   EDDQENNGYQEETQTGLIDDETSKKTQQHSPQDLSNEEATEINHFEDSSKESKESSDPYL  438

Query  309   DNPTETKTNFDEYESEEITNDSNDQEiikgskkkyiiggivvavliviilFSRSIFHYFM  368
             DNPTETKTNFDE  SEEITNDSNDQEIIKGSKKKYIIGGIVVAVLIVIILFSRSIFHYFM
Sbjct  439   DNPTETKTNFDEDKSEEITNDSNDQEIIKGSKKKYIIGGIVVAVLIVIILFSRSIFHYFM  498

Query  369   PLEDKSSRFSKDRNLYVNDEIQIRQEYNQLLKERNEKGNMIDKNLFFNDDPNRTLYNYLN  428
             PLEDKSSRFSKDRNLYVNDEIQIRQEYN+LLKERNEKGNMIDKNLFFNDDPNRTLYNYLN
Sbjct  499   PLEDKSSRFSKDRNLYVNDEIQIRQEYNRLLKERNEKGNMIDKNLFFNDDPNRTLYNYLN  558

Query  429   IAEIEDKNPLRAFYECISNGGNYEEClklikdkklqdqmkktlEAYKDCIKNAKTEEERI  488
             IAEIEDKNPLRAFYECISNGGNYEECLKLIKDKKLQDQMKKTLEAY+DCIKNAKTEEERI
Sbjct  559   IAEIEDKNPLRAFYECISNGGNYEECLKLIKDKKLQDQMKKTLEAYNDCIKNAKTEEERI  618

Query  489   KCLDLIKDENLKKSLLNQQKVQVALDCLKNAKTDEERNECLKLINDPEIREKFRKELGLQ  548
             KCLDLIKDENLKKSLLNQQKVQVALDCLKNAKTDEER+ECLKLINDPEIREKFRKEL LQ
Sbjct  619   KCLDLIKDENLKKSLLNQQKVQVALDCLKNAKTDEERKECLKLINDPEIREKFRKELELQ  678

Query  549   KELQEYKDCIKNAKTEAEKNECLKGLSKEAIERLKQQALDCLKNAKTDEERNECLKNIPQ  608
             KELQEYKDCIKNAKTEAEKNECLKGLSKEAIERLKQQALDCLKNAKTDEERNECLKNIPQ
Sbjct  679   KELQEYKDCIKNAKTEAEKNECLKGLSKEAIERLKQQALDCLKNAKTDEERNECLKNIPQ  738

Query  609   DLQKELLADMSVKAYKDCVSRARNekekkecekLLTPEAKKKLEQQVLDCLKNAKTDEER  668
             DLQKELLADMSVKAYKDCVS+ARNEKEK+ECEKLLTPEA+KKLEQQVLDCLKNAKTDEER
Sbjct  739   DLQKELLADMSVKAYKDCVSKARNEKEKQECEKLLTPEARKKLEQQVLDCLKNAKTDEER  798

Query  669   KKCLKDLPKDLQSDILAKESVKAYKDCVSQakteaekkeceklltpeakklleeeakeSV  728
             KKCLKDLPKDLQSDILAKESVKAYKDCVSQAK EAEKKECEKLLTPEAKKLLEEEAKESV
Sbjct  799   KKCLKDLPKDLQSDILAKESVKAYKDCVSQAKNEAEKKECEKLLTPEAKKLLEEEAKESV  858

Query  729   KAYLDCVSQARTEAEKKECeklltpeakkkleeakksvkaYLDCVSQARTEAEKKECEKL  788
             KAYLDCVSQA+TEAEKKECEKLLTPEA+KKLEEAKKSVKAYLDCVSQA+ E EKKECEKL
Sbjct  859   KAYLDCVSQAKTEAEKKECEKLLTPEARKKLEEAKKSVKAYLDCVSQAKNEDEKKECEKL  918

Query  789   LTPEAKKLLEQQVLDCLKNAKTDEERKKCLKDLPKDLQKKVLAKESVKAYLDCVSQakte  848
             LTPEA+KLLEQQ LDCLKNAKTDEERKKCLKDLPKDLQKKVLAKESVKAYLDCVSQAKTE
Sbjct  919   LTPEARKLLEQQALDCLKNAKTDEERKKCLKDLPKDLQKKVLAKESVKAYLDCVSQAKTE  978

Query  849   aekkeceklltpeakklleeakeslkaYKDCVSRARNekekkeceklltpeakklleeea  908
             AEKKECEKLLTPEA+KLLEEAKES+KAYKDCVS+ARNEKEKKECEKLLTPEAKKLLEEEA
Sbjct  979   AEKKECEKLLTPEARKLLEEAKESIKAYKDCVSKARNEKEKKECEKLLTPEAKKLLEEEA  1038

Query  909   keSVKAYLDCVSQARTEAEKKECeklltpeakkkleeakksvkaYLDCVSQARTEAEKKE  968
             KESVKAYLDCVSQA+TEAEKKECEKLLTPEAKKKLEEAKKSVKAYLDCVSQA+ E EKKE
Sbjct  1039  KESVKAYLDCVSQAKTEAEKKECEKLLTPEAKKKLEEAKKSVKAYLDCVSQAKNEDEKKE  1098

Query  969   CEKLLTPEARKLLEQE------------------------------VKKSVKAYLDCVSR  998
             CEKLLTPEA+KLLEQ+                               K SVKAY DCVSR
Sbjct  1099  CEKLLTPEAKKLLEQQALDCLKNAKTEADKKRCVKDLPKDLQKKVLAKESVKAYKDCVSR  1158

Query  999   ARN--------------------------------------EKERKACEKLLTPEARKKL  1020
             ARN                                      E E+K CEKLLTPEA+K L
Sbjct  1159  ARNEKEKKECEKLLTPEAKKLLEEAKKSVKAYLDCVSQAKTEAEKKECEKLLTPEAKKLL  1218

Query  1021  EEAKKSVKAYLDCVSQARTEAEKKECEKLLTPEARKLLEQEVKKSVKAYLDCVSRARNEK  1080
             EEAK S+KAY DC+SQAR E E++ CEKLLTPEARKLLEQEVKKSVKAYLDCVS+A+ E 
Sbjct  1219  EEAKESLKAYKDCLSQARNEEERRACEKLLTPEARKLLEQEVKKSVKAYLDCVSQAKTEA  1278

Query  1081  EKQECEKLLTPEAKKFLEQQALDCLKNAKTETEKKRCVKDLPKDLQKKVLAKESVKAYLD  1140
             EK+ECEKLLTPEA+KFL +Q L+CL +A  E E+K C+K+LPKDLQ +VLAKES+KAY D
Sbjct  1279  EKKECEKLLTPEARKFLAKQVLNCLEKAGNEEERKACLKNLPKDLQENVLAKESLKAYKD  1338

Query  1141  CVSRARNEKERKACeklltpeakklleeakeslkaYKDCLSQARNEEERKACEKLLTPEA  1200
             C+S+ARNE ER+AC                                      EKLLTPEA
Sbjct  1339  CLSQARNEEERRAC--------------------------------------EKLLTPEA  1360

Query  1201  RKLLEQEVKKSVKAYLDCVSRARNEKEKQECEKLLTPEARKFLAKQ-------VLNCLEK  1253
             RKLLEQEVKKSVKAYLDCVSRARNEKEK+ECEKLLTPEARKFLAK+       + +CL K
Sbjct  1361  RKLLEQEVKKSVKAYLDCVSRARNEKEKKECEKLLTPEARKFLAKELQQKDKAIKDCL-K  1419

Query  1254  AGNEEERKA---CLKNLPKDLQENVLAKESLKAYKDCLSQARNEEERRACEKLLTPEARK  1310
              ++ ++R A   CL  L+ + + + L     KA  DCL  AR +EE+R C++L +     
Sbjct  1420  NADPNDRAAIMKCLDGLSDEEKLKYLQEAREKAVLDCLKTARTDEEKRKCQNLYSD----  1475

Query  1311  LLEQEVKKSVKAYLDCVSRARNEKEKQECEKLLTPEARKFLAKELQQKDKAIKDCLKN-A  1369
              L QE++          ++  + K++Q     L+   R      L+Q      +CL N  
Sbjct  1476  -LIQEIQ----------NKRTQSKQNQ-----LSKTER------LHQ----ASECLDNLD  1509

Query  1370  DPNDRAAIMKCLDGLSDEEK  1389
             DP D+ AI +CL+GLSD E+
Sbjct  1510  DPTDQQAIEQCLEGLSDSER  1529


 Score =  258 bits (965),  Expect = 2e-69, Method: Compositional matrix adjust.
 Identities = 286/326 (88%), Positives = 299/326 (92%), Gaps = 0/326 (0%)

Query  1    MNEENDKFETSKKTQQHSPQDLSNEETTEANHFEDsskeskesPDHHLDNPTETKTNFDE  60
            MNEENDK+ETSKKTQQHSPQDLSNEE+TE NHFEDSSKESKES+D  LDNPTETKTNFD 
Sbjct  1    MNEENDKLETSKKTQQHSPQDLSNEEATEINHFEDSSKESKESSDPYLDNPTETKTNFDG  60

Query  61   YESEETQTQMDFggnetsessngsLADKLFKKARKLVDDKRPFTQQKNLdeeiqepneed  120
              SEETQTQMD GG+ETSESSNGSLADKLFKKARKLVD+KRPFTQQKNLDEE QE NEED
Sbjct  61   DKSEETQTQMDSGGDETSESSNGSLADKLFKKARKLVDNKRPFTQQKNLDEETQELNEED  120

Query  121  dqennGYQEETQMDLIDDETSKKTQQHSPQDLSNEETTEANHFEDsskeskesPDHHLDN  180
            DQENNGYQEETQ +LIDDETSKKTQQHSPQDLSNEE+TE NHFEDSSKESKES+D  LDN
Sbjct  121  DQENNGYQEETQTGLIDDETSKKTQQHSPQDLSNEEATEINHFEDSSKESKESSDPYLDN  180

Query  181  PTETKTNFDEYESEETQTQMDFggnetsessngsLADKLFKKARKLVDDKRPFTQQKNLd  240
            PTETKTNFD   SEETQTQMD GG+ETSESSNGSLADKLFKKARKLVD+KRPFTQQKNLD
Sbjct  181  PTETKTNFDGDKSEETQTQMDSGGDETSESSNGSLADKLFKKARKLVDNKRPFTQQKNLD  240

Query  241  eeiqepneeddqennGYQEETQMDLIDDETSKKTQQHSPQDLSNEETTEANHFEDsskes  300
            EE QE NEEDDQENNGYQEETQ +LIDDETSKKTQQHSPQDLSNEE+TE NHFEDSSKES
Sbjct  241  EETQELNEEDDQENNGYQEETQTGLIDDETSKKTQQHSPQDLSNEEATEINHFEDSSKES  300

Query  301  kesPDHHLDNPTETKTNFDEYESEEI  326
            KES+D  LDNPTETKTNFD   SEE 
Sbjct  301  KESSDPYLDNPTETKTNFDGDKSEET  326


 Score =  253 bits (946),  Expect = 5e-68, Method: Compositional matrix adjust.
 Identities = 199/443 (45%), Positives = 286/443 (65%), Gaps = 58/443 (13%)

Query  1022  EAKKSVKAYLDCVSQARTEAEKKECEKLLTPEARKLLEQEVKKSVKAYLDCVSRARNEKE  1081
             E K++++A+ +C+S++   ++  EC KL+     K L++++KK++ AY DC+  A+ E E
Sbjct  563   EDKNPLRAFYECISNG---GNYEECLKLIKD---KKLQDQMKKTLEAYNDCIKNAKTEEE  616

Query  1082  KQECEKLLTPEA--KKFLEQQ----ALDCLKNAKTETEKKRCVK-----DLPKDLQKKVL  1130
             +  C  L+  E   K +L+QQ    ALDCLKNAKT+ E+K C+K     ++   ++K + 
Sbjct  617   RIKCLDLIKDENLKKSLLNQQKVQVALDCLKNAKTDEERKECLKLINDPEIREKFRKELE  676

Query  1131  AKESVKAYLDCVSRARNEKERKACeklltpeakklleeakeslkaYKDCLSQARNEEERK  1190
              +  ++ Y DC+  A+ E E++ C K L+ EA   L +         DCL +A+ +EER+
Sbjct  677   LQKELQEYKDCIKNAKTEAEKNECLKGLSKEAIERLKQQAL------DCLKNAKTDEERN  730

Query  1191  ACEKLLTPEARKLLEQEVKKSVKAYLDCVSRARNEKEKQECEKLLTPEARKFLAKQVLNC  1250
              C K +  + +K L  ++  SVKAY DCVS+ARNEKEKQECEKLLTPEARK L +QVL+C
Sbjct  731   ECLKNIPQDLQKELLADM--SVKAYKDCVSKARNEKEKQECEKLLTPEARKKLEQQVLDC  788

Query  1251  LEKAGNEEERKACLKNLPKDLQENVLAKESLKAYKDCLSQARNEEERRACEKLLTPEARK  1310
             L +A  +EERK CLK+LPKDLQ ++LAKES+KAYKDC+SQA+NE E++ CEKLLTPEA+K
Sbjct  789   LKNAKTDEERKKCLKDLPKDLQSDILAKESVKAYKDCVSQAKNEAEKKECEKLLTPEAKK  848

Query  1311  LLEQEVKKSVKAYLDCVSRARNEKEKQECEKLLTPEARK-----------FL-----AKE  1354
             LLE+E K SVKAYLDCVS+A+ E EK+ECEKLLTPEARK           +L     AK+
Sbjct  849   LLEEEAKESVKAYLDCVSQAKTEAEKKECEKLLTPEARKKLEEAKKSVKAYLDCVSQAKN  908

Query  1355  LQQK---------------DKAIKDCLKNADPNDRAAIMKCLDGLSDEEKLKYLQEAREK  1399
              ++K               ++   DCLKNA  ++     KCL +L+ + + K L     K
Sbjct  909   EDEKKECEKLLTPEARKLLEQQALDCLKNAKTDE--ERKKCLKDLPKDLQKKVLAKESVK  966

Query  1400  AVLDCLKTARTDEEKRKCQNLYS  1422
             A LDC+  A+T+ EK+ C++L +
Sbjct  967   AYLDCVSQAKTEAEKKECEKLLT  989


 Score = 76.0 bits (269),  Expect = 2e-14, Method: Compositional matrix adjust.
 Identities = 90/260 (35%), Positives = 144/260 (56%), Gaps = 43/260 (16%)

Query  1249  NCLEKAGNEEERKACLKNL-PKDLQENVLAKESLKAYKDCLSQARNEEERRACEKLLTPE  1307
             +C+ ++GN EE   CLK +  K LQ+++  K +L AY+DC+ +A+ EEER  C  L+  E
Sbjct  573   ECISNGGNYEE---CLKLIKDKKLQDQM--KKTLEAYNDCIKNAKTEEERIKCLDLIKDE  627

Query  1308  A--RKLLEQEVKKSVKAYLDCVSRARNEKEKQECEKLLT-PEARKFLAKELQ-QKD-KAI  1362
                + LL+Q+    V+  LDC+  A+ + E++EC KL+  PE R  + KEL+ QK+ +  
Sbjct  628   NLKKSLLNQQ---KVQVALDCLKNAKTDEERKECLKLINDPEIREKFRKELELQKELQEY  684

Query  1363  KDCLKNADPNDRAAIMKCLDGLSDE--EKLKYLQEAREKAVLDCLKTARTDEEKRKC---  1417
             KDC+KNA  +  A    CL GLS E  E+LK       +  LDCLK A+TDEE+  C   
Sbjct  685   KDCIKNAKTE--AEKNECLKGLSKEAIERLK-------QQALDCLKNAKTDEERNECLKN  735

Query  1418  --QNLYSDLIQEIQ--------NKRTQSKQNQ-----LSKTERLHQASECLDNLDDPTDQ  1462
               Q+L  +L+ ++         +K  + K++Q     L+   R     + LD L ++  +
Sbjct  736   IPQDLQKELLADMSVKAYKDCVSKARNEKEKQECEKLLTPEARKKLEQQVLDCLKNAKTD  795

Query  1463  EAIEQCLEGLSDSERALILG  1482
             E   +CL +L+   ++ IL+
Sbjct  796   EERKKCLKDLPKDLQSDILA  815

9) HPSJM_02650 in NC_014560


> JQ685133|1|G1|442739051|AGC69785.1|Helicobacter_pylori_J166_isolate_31063-2.8/rOut1|+|1..5853|cagY|-|cag 
pathogenicity island 
protein Y
Length=1950

 Score = 1313 bits (4981),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 1047/1415 (74%), Positives = 1137/1415 (81%), Gaps = 175/1415 (12%)

Query  550   DCLKNAKTDEERKKCLKDL-PKDLQSDILAKESLKAYKDCTSQAKTEDEKKECeklltpe  608
             +C+ N+   EE   CLK +  K LQ ++  K +L AY+DC  +AKTE+E+  C  L+  E
Sbjct  573   ECISNGGNYEE---CLKLIKDKKLQDQM--KKTLEAYNDCIKNAKTEEERIKCLDLIKDE  627

Query  609   akklleeeakeSVKAYLDCVSQAKTEDEKKEC----eklltpeakkkleeakksvkaYLD  664
               K    + +  V+  LDC+ +AKT++E+KEC    +     E  +K  E +K ++ Y D
Sbjct  628   NLKKSLLNQQ-KVQVALDCLKNAKTDEERKECLKLINDPEIREKFRKELELQKELQEYKD  686

Query  665   CVSQAKTEDEKKECEKLLTPEAKKLLEQQALDCLKNAKTDEERKECLKDLPKDLQKKVLA  724
             C+ +AKTE EK+EC K L+ EA   L QQALDCLKNAKTDEER+ECLK++P+DLQK +LA
Sbjct  687   CIKNAKTEAEKNECLKGLSKEAIERLKQQALDCLKNAKTDEERNECLKNIPQDLQKELLA  746

Query  725   KESVRVYLDCVSKAKNEAERKECEKLLTPEARKLLEE-----------------------  761
               SV+ Y DCVSKA+NE E++ECEKLLTPEARK LE+                       
Sbjct  747   DMSVKAYKDCVSKARNEKEKQECEKLLTPEARKKLEQQVLDCLKNAKTDEERKKCLKDLP  806

Query  762   --------AKESVKAYLDCVSRARNekekkecekLLTPEARKLLEE-SKKSVKAYLDCVS  812
                     AKESVKAY DCVS+A+NE EKKECEKLLTPEA+KLLEE +K SVKAYLDCVS
Sbjct  807   KDLQSDILAKESVKAYKDCVSQAKNEAEKKECEKLLTPEAKKLLEEEAKESVKAYLDCVS  866

Query  813   QAKNEAERKECEKLLTPEARKLLEEAKESVKAYKDCVSRARNekekkecekLLTPEARKL  872
             QAK EAE+KECEKLLTPEARK LEEAK SVKAY DCVS+A+NE EKKECEKLLTPEARKL
Sbjct  867   QAKTEAEKKECEKLLTPEARKKLEEAKKSVKAYLDCVSQAKNEDEKKECEKLLTPEARKL  926

Query  873   LEE-------------------------------SKKSVKAYLDCVSQAKNEAERKECEK  901
             LE+                               +K SVKAYLDCVSQAK EAE+KECEK
Sbjct  927   LEQQALDCLKNAKTDEERKKCLKDLPKDLQKKVLAKESVKAYLDCVSQAKTEAEKKECEK  986

Query  902   LLTPEARKLLEEAKKSVKAYLDCVSRARNekekkecekLLTPEARKLLENQALDCLKNAK  961
             LLTPEARKLLEEAK S+KAY DCVS+ARNEKEKKECEKLLTPEA+KLLE++A        
Sbjct  987   LLTPEARKLLEEAKESIKAYKDCVSKARNEKEKKECEKLLTPEAKKLLEEEA--------  1038

Query  962   TEAEKKRCVKDLPKDLQKKVLAKESVRVYLDCVSKAKNEAERKECEKLLTPEARKLLEEA  1021
                                   KESV+ YLDCVS+AK EAE+KECEKLLTPEA+K LEEA
Sbjct  1039  ----------------------KESVKAYLDCVSQAKTEAEKKECEKLLTPEAKKKLEEA  1076

Query  1022  KESVKAYKDCVSRARNEKEKQECEKLLTPEARKLLEQEV---------------------  1060
             K SVKAY DCVS+A+NE EK+ECEKLLTPEA+KLLEQ+                      
Sbjct  1077  KKSVKAYLDCVSQAKNEDEKKECEKLLTPEAKKLLEQQALDCLKNAKTEADKKRCVKDLP  1136

Query  1061  ---------KKSVKAYLDCVSRARNekekkecekLLTPKARKLLENQA------LDCLKN  1105
                      K SVKAY DCVSRARNEKEKKECEKLLTP A+KLLE+        LDC+ +
Sbjct  1137  KDLQKKVLAKESVKAYKDCVSRARNEKEKKECEKLLTPEAKKLLEEAKKSVKAYLDCVSQ  1196

Query  1106  AKTEAEKKRCVKDLPKDLQKKVL--AKKSVKAYLDCVSRARNEKEKQECEKLLTPEARKL  1163
             AKTEAEKK C K L  +  KK+L  AK S+KAY DC+S+ARNE E++ CEKLLTPEARKL
Sbjct  1197  AKTEAEKKECEKLLTPE-AKKLLEEAKESLKAYKDCLSQARNEEERRACEKLLTPEARKL  1255

Query  1164  LE-EAKKSVKAYLDCVSRARNEKEKQECEKLLTPEARKLLEE------------------  1204
             LE E KKSVKAYLDCVS+A+ E EK+ECEKLLTPEARK+L                    
Sbjct  1256  LEQEVKKSVKAYLDCVSQAKTEAEKKECEKLLTPEARKFLAKQVLNCLEKAGNEEERKAC  1315

Query  1205  -------------AKESLKAYKDCLSQARNETERRACEKLLTPEARKLLEQEVKKSVKAY  1251
                          AKESLKAYKDCLSQARNE ERRACEKLLTPEARKLLEQEVKKSVKAY
Sbjct  1316  LKNLPKDLQENVLAKESLKAYKDCLSQARNEEERRACEKLLTPEARKLLEQEVKKSVKAY  1375

Query  1252  LDCVSRARNEKEKQECEKLLTPEARKFLEKQRQQKDKAIKDCLKNADPNDRAAIMKCLDG  1311
             LDCVSRARNEKEK+ECEKLLTPEARKFL K+ QQKDKAIKDCLKNADPNDRAAIMKCLDG
Sbjct  1376  LDCVSRARNEKEKKECEKLLTPEARKFLAKELQQKDKAIKDCLKNADPNDRAAIMKCLDG  1435

Query  1312  LSDEEKLKYLQEAREKAVLDCLKTARTDEEKRKCQNLYSDLIQEIQNKRAQNKQNQLSKT  1371
             LSDEEKLKYLQEAREKAVLDCLKTARTDEEKRKCQNLYSDLIQEIQNKR+Q+KQNQLSKT
Sbjct  1436  LSDEEKLKYLQEAREKAVLDCLKTARTDEEKRKCQNLYSDLIQEIQNKRTQSKQNQLSKT  1495

Query  1372  ERLHQASECLDNLDDPTDQEAIEQCLEGLSDSERALILGIKRQADEVDRIYSDLRSRKTF  1431
             ERLHQASECLDNLDDPTDQ+AIEQCLEGLSDSERALILGIKRQADEVDRIYSDLR+RKTF
Sbjct  1496  ERLHQASECLDNLDDPTDQQAIEQCLEGLSDSERALILGIKRQADEVDRIYSDLRNRKTF  1555

Query  1432  DNMAAKGYPLLPMDFKNGGDIATINATNVDADKIASDNPIYASIEPDITKQYETEKTIkd  1491
             DNMAAKGYPLLPMDFKNGGDIATINATNVDADKIASDNPIYASIEPDITKQYETEKTIKD
Sbjct  1556  DNMAAKGYPLLPMDFKNGGDIATINATNVDADKIASDNPIYASIEPDITKQYETEKTIKD  1615

Query  1492  ksleaklakalggdkkdddkekskkPTAETKAESNKIDKDVAETAKNISEIALKNKKEKS  1551
             K+LEAKLAKALGG+KKDDDKEKSKK+TAE+K ESNKIDKDVAETAKNISEIALKNKKEK+
Sbjct  1616  KNLEAKLAKALGGNKKDDDKEKSKKSTAEAKVESNKIDKDVAETAKNISEIALKNKKEKN  1675

Query  1552  GDFVDENGNPIddkkkeekqdeTSPVKQAFIGKSDPTFVLAQYTPIEITLTSKVDATLTG  1611
             G+FVDENGNPIDDKKK EKQDETSPVKQAFIGKSDPTFVLAQYTPIEITLTSKVDATLTG
Sbjct  1676  GEFVDENGNPIDDKKKAEKQDETSPVKQAFIGKSDPTFVLAQYTPIEITLTSKVDATLTG  1735

Query  1612  IVSGVVAKDVWNMNGTMILLDKGTKVYGNYQSVKGGTPIMTRLMIVFTKAITPDGVIIPL  1671
             IVSGVVAKDVWNMNGTMILLDKGTKVYGNYQSVKGGTPIMTRLMIVFTKAITPDGVIIPL
Sbjct  1736  IVSGVVAKDVWNMNGTMILLDKGTKVYGNYQSVKGGTPIMTRLMIVFTKAITPDGVIIPL  1795

Query  1672  ANAQAAGMLGEAGVDGYVNNHFMKRIGFAVIASVVNSFLQTAPIIALDKLIGLGKGRSER  1731
             ANAQAAGMLGEAGVDGYVNNHFMKRIGFAVIASVVNSFLQTAPIIALDKLIGLGKGRSER
Sbjct  1796  ANAQAAGMLGEAGVDGYVNNHFMKRIGFAVIASVVNSFLQTAPIIALDKLIGLGKGRSER  1855

Query  1732  TPEFNYALGQAINGSMQSSAQMSNQILGQLMNIPPSFYKNEGDSIKILTMDDIDFSGVYD  1791
             TPEFNYALGQAINGSMQSSAQMSNQILGQLMNIPPSFYKNEGDSIKILTMDDIDFSGVYD
Sbjct  1856  TPEFNYALGQAINGSMQSSAQMSNQILGQLMNIPPSFYKNEGDSIKILTMDDIDFSGVYD  1915

Query  1792  VKITNKSVVDEIIKQSTKTLSREHEEITTSPKGGN  1826
             VKITNKSVVDEIIKQSTKTLSREHEEITTSPKGGN
Sbjct  1916  VKITNKSVVDEIIKQSTKTLSREHEEITTSPKGGN  1950


 Score = 1063 bits (4031),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 965/1230 (79%), Positives = 1041/1230 (85%), Gaps = 109/1230 (8%)

Query  9     ETSKKAQQHSPQDLSNEEATEANHFEDLLKEESSDN--HLDNSTETQTHFDEDKLEETQT  66
             ETSKK+QQHSPQDLSNEEATE NHFED  KE    +   LDN+TET+T+FD DK EETQT
Sbjct  269   ETSKKTQQHSPQDLSNEEATEINHFEDSSKESKESSDPYLDNPTETKTNFDGDKSEETQT  328

Query  67    QMDsegnetsessngsLADKLFKKARKLVDNKRPFTQQKnldeetqelneeddqenneyq  126
             QMDS G+ETSESSNGSLADKLFKKARKLVDNKRPFTQQKNLDEETQELNEEDDQENN YQ
Sbjct  329   QMDSGGDETSESSNGSLADKLFKKARKLVDNKRPFTQQKNLDEETQELNEEDDQENNGYQ  388

Query  127   eetqtGLIDDETSKKAQQHSPQDLSNEEATEVNHFEDLLKEESSDNHLDNPTESSDNHLD  186
             EETQTGLIDDETSKK+QQHSPQDLSNEEATE+NHFE                    +   
Sbjct  389   EETQTGLIDDETSKKTQQHSPQDLSNEEATEINHFE--------------------DSSK  428

Query  187   NSTESSDNHLDNPTETKTQETKTHFDEDKLEEITDDSNDQEiikgskkkyiiggivvavl  246
             +S ESSD  LDNPTETKT     +FDEDK EEIT+DSNDQEIIKGSKKKYIIGGIVVAVL
Sbjct  429   ESKESSDPYLDNPTETKT-----NFDEDKSEEITNDSNDQEIIKGSKKKYIIGGIVVAVL  483

Query  247   iviilFSRSIFHYFMPLEDKSSRFSKDRNLYVNDEIQIRQEYNRLLKERNEKGNMIDKNL  306
             IVIILFSRSIFHYFMPLEDKSSRFSKDRNLYVNDEIQIRQEYNRLLKERNEKGNMIDKNL
Sbjct  484   IVIILFSRSIFHYFMPLEDKSSRFSKDRNLYVNDEIQIRQEYNRLLKERNEKGNMIDKNL  543

Query  307   FFNDDPNRTLYNYLNIAEIEDKNPLRAFYECIGNGGNYEECLKLIKDKKLQEQMKKTLEA  366
             FFNDDPNRTLYNYLNIAEIEDKNPLRAFYECI+NGGNYEECLKLIKDKKLQ+QMKKTLEA
Sbjct  544   FFNDDPNRTLYNYLNIAEIEDKNPLRAFYECISNGGNYEECLKLIKDKKLQDQMKKTLEA  603

Query  367   YNDCIKNAKTEEERIKCLDLIKDENLKKSLLNQQKVQVALDCLKNAKTDEERKECLKLIN  426
             YNDCIKNAKTEEERIKCLDLIKDENLKKSLLNQQKVQVALDCLKNAKTDEERKECLKLIN
Sbjct  604   YNDCIKNAKTEEERIKCLDLIKDENLKKSLLNQQKVQVALDCLKNAKTDEERKECLKLIN  663

Query  427   DPEIrekfrkelelqkelqeYKDCIKNAKTEAEKNECLKGLSKEAIERLKQQALDCLKNA  486
             DPEIREKFRKELELQKELQEYKDCIKNAKTEAEKNECLKGLSKEAIERLKQQALDCLKNA
Sbjct  664   DPEIREKFRKELELQKELQEYKDCIKNAKTEAEKNECLKGLSKEAIERLKQQALDCLKNA  723

Query  487   KTDEERNECLKNIPQDLQKELLADMSVKAYKDCVSRARNekekkecekLLTPEAKKKLEQ  546
             KTDEERNECLKNIPQDLQKELLADMSVKAYKDCVS+ARNEKEK+ECEKLLTPEA+KKLEQ
Sbjct  724   KTDEERNECLKNIPQDLQKELLADMSVKAYKDCVSKARNEKEKQECEKLLTPEARKKLEQ  783

Query  547   QVLDCLKNAKTDEERKKCLKDLPKDLQSDILAKESLKAYKDCTSQAKTEDEKKECekllt  606
             QVLDCLKNAKTDEERKKCLKDLPKDLQSDILAKES+KAYKDC SQAK E EKKECEKLLT
Sbjct  784   QVLDCLKNAKTDEERKKCLKDLPKDLQSDILAKESVKAYKDCVSQAKNEAEKKECEKLLT  843

Query  607   peakklleeeakeSVKAYLDCVSQAKTEDEKKECeklltpeakkkleeakksvkaYLDCV  666
             PEAKKLLEEEAKESVKAYLDCVSQAKTE EKKECEKLLTPEA+KKLEEAKKSVKAYLDCV
Sbjct  844   PEAKKLLEEEAKESVKAYLDCVSQAKTEAEKKECEKLLTPEARKKLEEAKKSVKAYLDCV  903

Query  667   SQAKTEDEKKECEKLLTPEAKKLLEQQALDCLKNAKTDEERKECLKDLPKDLQKKVLAKE  726
             SQAK EDEKKECEKLLTPEA+KLLEQQALDCLKNAKTDEERK CLKDLPKDLQKKVLAKE
Sbjct  904   SQAKNEDEKKECEKLLTPEARKLLEQQALDCLKNAKTDEERKKCLKDLPKDLQKKVLAKE  963

Query  727   SVRVYLDCVSKAKNEAERKECEKLLTPEARKLLEEAKESVKAYLDCVSRARNekekkece  786
             SV+ YLDCVS+AK EAE+KECEKLLTPEARKLLEEAKES+KAY DCVS+ARNEKEKKECE
Sbjct  964   SVKAYLDCVSQAKTEAEKKECEKLLTPEARKLLEEAKESIKAYKDCVSKARNEKEKKECE  1023

Query  787   kLLTPEARKLL-EESKKSVKAYLDCVSQAKNEAERKECEKLLTPEARKLLEEAKESVKAY  845
             KLLTPEA+KLL EE+K SVKAYLDCVSQAK EAE+KECEKLLTPEA+K LEEAK SVKAY
Sbjct  1024  KLLTPEAKKLLEEEAKESVKAYLDCVSQAKTEAEKKECEKLLTPEAKKKLEEAKKSVKAY  1083

Query  846   KDCVSRARNekekkecekLLTPEARKLLEE------------------------------  875
              DCVS+A+NE EKKECEKLLTPEA+KLLE+                              
Sbjct  1084  LDCVSQAKNEDEKKECEKLLTPEAKKLLEQQALDCLKNAKTEADKKRCVKDLPKDLQKKV  1143

Query  876   -SKKSVKAYLDCVSQAKNEAERKECEKLLTPEARKLLEEAKKSVKAYLDCVSRARNekek  934
              +K SVKAY DCVS+A+NE E+KECEKLLTPEA+KLLEEAKKSVKAYLDCVS+A+ E EK
Sbjct  1144  LAKESVKAYKDCVSRARNEKEKKECEKLLTPEAKKLLEEAKKSVKAYLDCVSQAKTEAEK  1203

Query  935   kecekLLTPEARKLLEN--QAL----DCLKNAKTEAEKKRCVKDLPKDLQKKVLAKE---  985
             KECEKLLTPEA+KLLE+  ++L    DCL +A+ E E++ C K L  +  +K+L +E   
Sbjct  1204  KECEKLLTPEAKKLLEEAKESLKAYKDCLSQARNEEERRACEKLLTPE-ARKLLEQEVKK  1262

Query  986   SVRVYLDCVSKAKNEAERKECEKLLTPEARKLLEE-------------------------  1020
             SV+ YLDCVS+AK EAE+KECEKLLTPEARK+L                           
Sbjct  1263  SVKAYLDCVSQAKTEAEKKECEKLLTPEARKFLAKQVLNCLEKAGNEEERKACLKNLPKD  1322

Query  1021  ------AKESVKAYKDCVSRARNEKEKQECEKLLTPEARKLLEQEVKKSVKAYLDCVSRA  1074
                   AKES+KAYKDC+S+ARNE E++ CEKLLTPEARKLLEQEVKKSVKAYLDCVSRA
Sbjct  1323  LQENVLAKESLKAYKDCLSQARNEEERRACEKLLTPEARKLLEQEVKKSVKAYLDCVSRA  1382

Query  1075  RNekekkecekLLTPKARKLL-------ENQALDCLKNAKTE--AEKKRCVKDLPKDLQK  1125
             RNEKEKKECEKLLTP ARK+L       ++   DCLKNA  +  A   +C+ +L+ + + 
Sbjct  1383  RNEKEKKECEKLLTPEARKFLAKELQQKDKAIKDCLKNADPNDRAAIMKCLDGLSDEEKL  1442

Query  1126  KVLAKKSVKAYLDCVSRARNEKEKQECEKL  1155
             K L     KA LDC+  AR + EK+ C++L
Sbjct  1443  KYLQEAREKAVLDCLKTARTDEEKRKCQNL  1472


 Score =  138 bits (506),  Expect = 3e-33, Method: Compositional matrix adjust.
 Identities = 154/217 (71%), Positives = 179/217 (83%), Gaps = 4/217 (1%)

Query  1    MNEENDKLETSKKAQQHSPQDLSNEEATEANHFEDLLKEESSDN--HLDNSTETQTHFDE  58
            MNEENDKLETSKK+QQHSPQDLSNEEATE NHFED  KE    +   LDN+TET+T+FD 
Sbjct  1    MNEENDKLETSKKTQQHSPQDLSNEEATEINHFEDSSKESKESSDPYLDNPTETKTNFDG  60

Query  59   DKLEETQTQMDsegnetsessngsLADKLFKKARKLVDNKRPFTQQKnldeetqelneed  118
            DK EETQTQMDS G+ETSESSNGSLADKLFKKARKLVDNKRPFTQQKNLDEETQELNEED
Sbjct  61   DKSEETQTQMDSGGDETSESSNGSLADKLFKKARKLVDNKRPFTQQKNLDEETQELNEED  120

Query  119  dqenneyqeetqtGLIDDETSKKAQQHSPQDLSNEEATEVNHFEDLLKEESSDN--HLDN  176
            DQENN YQEETQTGLIDDETSKK+QQHSPQDLSNEEATE+NHFED  KE    +   LDN
Sbjct  121  DQENNGYQEETQTGLIDDETSKKTQQHSPQDLSNEEATEINHFEDSSKESKESSDPYLDN  180

Query  177  PTESSDNHLDNSTESSDNHLDNPTETKTQETKTHFDE  213
            PTE+  N  ++ +E ++ ++D+  +  ++ ++  + +
Sbjct  181  PTETKTNFDGDKSEETQTQMDSGGDETSESSNGSLAD  217


 Score =  128 bits (467),  Expect = 4e-30, Method: Compositional matrix adjust.
 Identities = 146/209 (70%), Positives = 171/209 (82%), Gaps = 4/209 (1%)

Query  9    ETSKKAQQHSPQDLSNEEATEANHFEDLLKEESSDN--HLDNSTETQTHFDEDKLEETQT  66
            ETSKK+QQHSPQDLSNEEATE NHFED  KE    +   LDN+TET+T+FD DK EETQT
Sbjct  139  ETSKKTQQHSPQDLSNEEATEINHFEDSSKESKESSDPYLDNPTETKTNFDGDKSEETQT  198

Query  67   QMDsegnetsessngsLADKLFKKARKLVDNKRPFTQQKnldeetqelneeddqenneyq  126
            QMDS G+ETSESSNGSLADKLFKKARKLVDNKRPFTQQKNLDEETQELNEEDDQENN YQ
Sbjct  199  QMDSGGDETSESSNGSLADKLFKKARKLVDNKRPFTQQKNLDEETQELNEEDDQENNGYQ  258

Query  127  eetqtGLIDDETSKKAQQHSPQDLSNEEATEVNHFEDLLKEESSDN--HLDNPTESSDNH  184
            EETQTGLIDDETSKK+QQHSPQDLSNEEATE+NHFED  KE    +   LDNPTE+  N 
Sbjct  259  EETQTGLIDDETSKKTQQHSPQDLSNEEATEINHFEDSSKESKESSDPYLDNPTETKTNF  318

Query  185  LDNSTESSDNHLDNPTETKTQETKTHFDE  213
             ++ +E ++ ++D+  +  ++ ++  + +
Sbjct  319  DGDKSEETQTQMDSGGDETSESSNGSLAD  347

10) K750_04135 in NC_021217


> JQ685133|1|G1|442739051|AGC69785.1|Helicobacter_pylori_J166_isolate_31063-2.8/rOut1|+|1..5853|cagY|-|cag 
pathogenicity island 
protein Y
Length=1950

 Score = 1282 bits (4864),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 1122/1384 (82%), Positives = 1186/1384 (86%), Gaps = 119/1384 (8%)

Query  651   DCLKNAKTDEERKKCLKDL-PKDLQSDILAKESVKAYKDCVSQAKTEDEKKECeklltpe  709
             +C+ N+   EE   CLK +  K LQ ++  K ++ AY+DC+ +AKTE+E+  C  L+  E
Sbjct  573   ECISNGGNYEE---CLKLIKDKKLQDQM--KKTLEAYNDCIKNAKTEEERIKCLDLIKDE  627

Query  710   akklleeeakkSVKAYLDCVSQAKTEDEKKECEKLLTPeakkk----leeskksvkaYLD  765
               K    + +  V+  LDC+ +AKT++E+KEC KL+     +       E +K ++ Y D
Sbjct  628   NLKKSLLNQQ-KVQVALDCLKNAKTDEERKECLKLINDPEIREKFRKELELQKELQEYKD  686

Query  766   CVSQakteaekkeceklltPEAKKLLEQQALDCLKNAKTEAEKKRCVKDLPKDLQKKVLA  825
             C+ +AKTEAEK+EC K L+ EA   L QQALDCLKNAKT+ E++ C+K++P+DLQK +LA
Sbjct  687   CIKNAKTEAEKNECLKGLSKEAIERLKQQALDCLKNAKTDEERNECLKNIPQDLQKELLA  746

Query  826   KESVKAYLDCVSQakneaekkecekLLTPEARKLLEE-----------------------  862
               SVKAY DCVS+A+NE EK+ECEKLLTPEARK LE+                       
Sbjct  747   DMSVKAYKDCVSKARNEKEKQECEKLLTPEARKKLEQQVLDCLKNAKTDEERKKCLKDLP  806

Query  863   --------AKESVKAYKDCVSQAKTEDEKKECeklltpeakklleeeakkSVKAYLDCVS  914
                     AKESVKAYKDCVSQAK E EKKECEKLLTPEAKKLLEEEAK SVKAYLDCVS
Sbjct  807   KDLQSDILAKESVKAYKDCVSQAKNEAEKKECEKLLTPEAKKLLEEEAKESVKAYLDCVS  866

Query  915   QAKTEDEKKECEKLLTPeakkkleeskksvkaYLDCVSQakteaekkeceklltPEAKKL  974
             QAKTE EKKECEKLLTPEA+KKLEE+KKSVKAYLDCVSQAK E EKKECEKLLTPEA+KL
Sbjct  867   QAKTEAEKKECEKLLTPEARKKLEEAKKSVKAYLDCVSQAKNEDEKKECEKLLTPEARKL  926

Query  975   LEQQALDCLKNAKTEAEKKRCVKDLPKDLQKKVLAKESVKAYLDCV--------------  1020
             LEQQALDCLKNAKT+ E+K+C+KDLPKDLQKKVLAKESVKAYLDCV              
Sbjct  927   LEQQALDCLKNAKTDEERKKCLKDLPKDLQKKVLAKESVKAYLDCVSQAKTEAEKKECEK  986

Query  1021  ------------------------SRARNekekkecekLLTPeakkk-leeskesvkaYL  1055
                                     S+ARNEKEKKECEKLLTPEAKK   EE+KESVKAYL
Sbjct  987   LLTPEARKLLEEAKESIKAYKDCVSKARNEKEKKECEKLLTPEAKKLLEEEAKESVKAYL  1046

Query  1056  DCVSRARNekekkecekLLTPeakkkleeskksvkaYLDCVSQakteaekkeceklltPE  1115
             DCVS+A+ E EKKECEKLLTPEAKKKLEE+KKSVKAYLDCVSQAK E EKKECEKLLTPE
Sbjct  1047  DCVSQAKTEAEKKECEKLLTPEAKKKLEEAKKSVKAYLDCVSQAKNEDEKKECEKLLTPE  1106

Query  1116  AKKLLEQQALDCLKNAKTEAEKKRCVKDLPKDLQKKVLAKESVKA---------------  1160
             AKKLLEQQALDCLKNAKTEA+KKRCVKDLPKDLQKKVLAKESVKA               
Sbjct  1107  AKKLLEQQALDCLKNAKTEADKKRCVKDLPKDLQKKVLAKESVKAYKDCVSRARNEKEKK  1166

Query  1161  -----------------------YLDCVSRARNekekkeceklltpeakklleeakeslk  1197
                                    YLDCVS+A+ E EKKECEKLLTPEAKKLLEEAKESLK
Sbjct  1167  ECEKLLTPEAKKLLEEAKKSVKAYLDCVSQAKTEAEKKECEKLLTPEAKKLLEEAKESLK  1226

Query  1198  aYKDCLSQARNEEERRACEKLLTPEARKLLEQEVKKSVKAYLDCVSRARNekekkecekL  1257
             AYKDCLSQARNEEERRACEKLLTPEARKLLEQEVKKSVKAYLDCVS+A+ E EKKECEKL
Sbjct  1227  AYKDCLSQARNEEERRACEKLLTPEARKLLEQEVKKSVKAYLDCVSQAKTEAEKKECEKL  1286

Query  1258  LTPEARKFLAKQVLNCLEKAGNEEERKACLKNLPKDLQENVLAKESLKAYKDCLSQARNE  1317
             LTPEARKFLAKQVLNCLEKAGNEEERKACLKNLPKDLQENVLAKESLKAYKDCLSQARNE
Sbjct  1287  LTPEARKFLAKQVLNCLEKAGNEEERKACLKNLPKDLQENVLAKESLKAYKDCLSQARNE  1346

Query  1318  EERRACEKLLTPEARKLLEQEVKKSVKAYLDCVSRARNEKEKQECEKLLTPEARKFLAKE  1377
             EERRACEKLLTPEARKLLEQEVKKSVKAYLDCVSRARNEKEK+ECEKLLTPEARKFLAKE
Sbjct  1347  EERRACEKLLTPEARKLLEQEVKKSVKAYLDCVSRARNEKEKKECEKLLTPEARKFLAKE  1406

Query  1378  LQQKDKAIKDCLKNADPNDRAAIMKCLDGLSDEEKLKYLQEAREKAVLDCLKTARTDEEK  1437
             LQQKDKAIKDCLKNADPNDRAAIMKCLDGLSDEEKLKYLQEAREKAVLDCLKTARTDEEK
Sbjct  1407  LQQKDKAIKDCLKNADPNDRAAIMKCLDGLSDEEKLKYLQEAREKAVLDCLKTARTDEEK  1466

Query  1438  RKCQNLYSDLIQEIQNKRTQNKQNQLSKTERLHQASECLDNLDDPTDQQAIEQCLEGLSD  1497
             RKCQNLYSDLIQEIQNKRTQ+KQNQLSKTERLHQASECLDNLDDPTDQQAIEQCLEGLSD
Sbjct  1467  RKCQNLYSDLIQEIQNKRTQSKQNQLSKTERLHQASECLDNLDDPTDQQAIEQCLEGLSD  1526

Query  1498  SERALILGIKRQADEVDLIYSDLRNRKTFDNMAAKGYPLLPMDFKNGGDIATINATNVDA  1557
             SERALILGIKRQADEVD IYSDLRNRKTFDNMAAKGYPLLPMDFKNGGDIATINATNVDA
Sbjct  1527  SERALILGIKRQADEVDRIYSDLRNRKTFDNMAAKGYPLLPMDFKNGGDIATINATNVDA  1586

Query  1558  DKIASDNPIYASIEPDITKQYETEKTIkdknleaklakalggnkkdddkeksekstakak  1617
             DKIASDNPIYASIEPDITKQYETEKTIKDKNLEAKLAKALGGNKKDDDKEKS KSTA AK
Sbjct  1587  DKIASDNPIYASIEPDITKQYETEKTIKDKNLEAKLAKALGGNKKDDDKEKSKKSTAEAK  1646

Query  1618  aesNKIDKDVAETAKNISEIALKNKKEKSGDFVDENGNPIDDKKKAETQDETSPVKQAFI  1677
              ESNKIDKDVAETAKNISEIALKNKKEK+G+FVDENGNPIDDKKKAE QDETSPVKQAFI
Sbjct  1647  VESNKIDKDVAETAKNISEIALKNKKEKNGEFVDENGNPIDDKKKAEKQDETSPVKQAFI  1706

Query  1678  GKSDPTFVLAQYTPIEITLTSKVDATLTGIVSGVVAKDVWNMNGTMILLDKGTKVYGNYQ  1737
             GKSDPTFVLAQYTPIEITLTSKVDATLTGIVSGVVAKDVWNMNGTMILLDKGTKVYGNYQ
Sbjct  1707  GKSDPTFVLAQYTPIEITLTSKVDATLTGIVSGVVAKDVWNMNGTMILLDKGTKVYGNYQ  1766

Query  1738  SVKGGTPIMTRLMIVFTKAITPDGVIIPLANAQAAGMLGEAGVDGYVNNHFMKRIGFAVI  1797
             SVKGGTPIMTRLMIVFTKAITPDGVIIPLANAQAAGMLGEAGVDGYVNNHFMKRIGFAVI
Sbjct  1767  SVKGGTPIMTRLMIVFTKAITPDGVIIPLANAQAAGMLGEAGVDGYVNNHFMKRIGFAVI  1826

Query  1798  ASVVNSFLQTAPIIALDKLIGLGKGRSERTPEFNYALGQAINGSMQSSAQMSNQILGQLM  1857
             ASVVNSFLQTAPIIALDKLIGLGKGRSERTPEFNYALGQAINGSMQSSAQMSNQILGQLM
Sbjct  1827  ASVVNSFLQTAPIIALDKLIGLGKGRSERTPEFNYALGQAINGSMQSSAQMSNQILGQLM  1886

Query  1858  NIPPSFYKNEGDSIKILTMDDIDFSGVYDVKITNKSVVDEIIKQSTKTLSREHEEITTSP  1917
             NIPPSFYKNEGDSIKILTMDDIDFSGVYDVKITNKSVVDEIIKQSTKTLSREHEEITTSP
Sbjct  1887  NIPPSFYKNEGDSIKILTMDDIDFSGVYDVKITNKSVVDEIIKQSTKTLSREHEEITTSP  1946

Query  1918  KGGN  1921
             KGGN
Sbjct  1947  KGGN  1950


 Score = 1169 bits (4434),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 1148/1460 (79%), Positives = 1233/1460 (85%), Gaps = 125/1460 (8%)

Query  9     ETSKKTQQHSPQDLSNEEATEANHFKDLLKEESSDNH--LENSTETQTNFDGDKLEETQT  66
             ETSKKTQQHSPQDLSNEEATE NHF D  KE    ++  L+N+TET+TNFDGDK EETQT
Sbjct  139   ETSKKTQQHSPQDLSNEEATEINHFEDSSKESKESSDPYLDNPTETKTNFDGDKSEETQT  198

Query  67    QMDsggnetsessngsLADKLFKKARKLVDNKRPFTQQKNLDEETQELNEEYDQENSEYQ  126
             QMDSGG+ETSESSNGSLADKLFKKARKLVDNKRPFTQQKNLDEETQELNEE DQEN+ YQ
Sbjct  199   QMDSGGDETSESSNGSLADKLFKKARKLVDNKRPFTQQKNLDEETQELNEEDDQENNGYQ  258

Query  127   EETQTGLIDDETSKKTQQHSPQDLSNEEATEANHFKDLLKEESSDNH--LDNSTETKSNF  184
             EETQTGLIDDETSKKTQQHSPQDLSNEEATE NHF D  KE    ++  LDN+TETK+NF
Sbjct  259   EETQTGLIDDETSKKTQQHSPQDLSNEEATEINHFEDSSKESKESSDPYLDNPTETKTNF  318

Query  185   DGDKLEETQTQIDSGGNETSESSDGSLADKLFKKARKLVDNKRPFTQQKnldeetqelne  244
             DGDK EETQTQ+DSGG+ETSESS+GSLADKLFKKARKLVDNKRPFTQQKNLDEETQELNE
Sbjct  319   DGDKSEETQTQMDSGGDETSESSNGSLADKLFKKARKLVDNKRPFTQQKNLDEETQELNE  378

Query  245   eddqennGYQEETQTDLIDDETSKKTQQDSPQYSSNEEATEVNHFEDLLKEESSDNH--L  302
             EDDQENNGYQEETQT+LIDDETSKKTQQ+SPQ  SNEEATE+NHFED  KE    ++  L
Sbjct  379   EDDQENNGYQEETQTGLIDDETSKKTQQHSPQDLSNEEATEINHFEDSSKESKESSDPYL  438

Query  303   DNPTETQTNFDGDKSEEITNDSNDQEiikgskkkyiiggivvavliviilFSRSIFHYFM  362
             DNPTET+TNFD DKSEEITNDSNDQEIIKGSKKKYIIGGIVVAVLIVIILFSRSIFHYFM
Sbjct  439   DNPTETKTNFDEDKSEEITNDSNDQEIIKGSKKKYIIGGIVVAVLIVIILFSRSIFHYFM  498

Query  363   PLEDKSSRFSKDRNLYVNDEIQIRQEYNRLLKERNEKGNMIDKNLFFNDDPNRTLYNYLN  422
             PLEDKSSRFSKDRNLYVNDEIQIRQEYNRLLKERNEKGNMIDKNLFFNDDPNRTLYNYLN
Sbjct  499   PLEDKSSRFSKDRNLYVNDEIQIRQEYNRLLKERNEKGNMIDKNLFFNDDPNRTLYNYLN  558

Query  423   IAEIEDKNPLRAFYECISNGGNYEEClklikdkklqdqmkktlEAYKDCIKNAKTEEERI  482
             IAEIEDKNPLRAFYECISNGGNYEECLKLIKDKKLQDQMKKTLEAY+DCIKNAKTEEERI
Sbjct  559   IAEIEDKNPLRAFYECISNGGNYEECLKLIKDKKLQDQMKKTLEAYNDCIKNAKTEEERI  618

Query  483   KCLDLIKDENLKKSLLNQQKVQVALDCLKNAKTDEERNECLKLINDPEIREKFRKELGLQ  542
             KCLDLIKDENLKKSLLNQQKVQVALDCLKNAKTDEER+ECLKLINDPEIREKFRKEL LQ
Sbjct  619   KCLDLIKDENLKKSLLNQQKVQVALDCLKNAKTDEERKECLKLINDPEIREKFRKELELQ  678

Query  543   KELQEYKDCIKNAKTEAEKNKCLKSLSKEAIERLKQQALDCLKNAKTDEERNECLKNIPQ  602
             KELQEYKDCIKNAKTEAEKN CLK+LSKEAIERLKQQALDCLKNAKTDEERNECLKNIPQ
Sbjct  679   KELQEYKDCIKNAKTEAEKNECLKGLSKEAIERLKQQALDCLKNAKTDEERNECLKNIPQ  738

Query  603   DLQKELLADMSVKAYKDCVSKARNekekkecekLLTPEARKKLEQQVLDCLKNAKTDEER  662
             DLQKELLADMSVKAYKDCVSKARNEKEK+ECEKLLTPEARKKLEQQVLDCLKNAKTDEER
Sbjct  739   DLQKELLADMSVKAYKDCVSKARNEKEKQECEKLLTPEARKKLEQQVLDCLKNAKTDEER  798

Query  663   KKCLKDLPKDLQSDILAKESVKAYKDCVSQAKTEDEKKECeklltpeakklleeeakkSV  722
             KKCLKDLPKDLQSDILAKESVKAYKDCVSQAK E EKKECEKLLTPEAKKLLEEEAK SV
Sbjct  799   KKCLKDLPKDLQSDILAKESVKAYKDCVSQAKNEAEKKECEKLLTPEAKKLLEEEAKESV  858

Query  723   KAYLDCVSQAKTEDEKKECEKLLTPeakkkleeskksvkaYLDCVSQakteaekkecekl  782
             KAYLDCVSQAKTE EKKECEKLLTPEA+KKLEE+KKSVKAYLDCVSQAK E EKKECEKL
Sbjct  859   KAYLDCVSQAKTEAEKKECEKLLTPEARKKLEEAKKSVKAYLDCVSQAKNEDEKKECEKL  918

Query  783   ltPEAKKLLEQQALDCLKNAKTEAEKKRCVKDLPKDLQKKVLAKESVKAYLDCVSQakne  842
             LTPEA+KLLEQQALDCLKNAKT+ E+K+C+KDLPKDLQKKVLAKESVKAYLDCVSQAK E
Sbjct  919   LTPEARKLLEQQALDCLKNAKTDEERKKCLKDLPKDLQKKVLAKESVKAYLDCVSQAKTE  978

Query  843   aekkecekLLTPEARKLLEEAKESVKAYKDCVSQAKTEDEKKECeklltpeakklleeea  902
             AEKKECEKLLTPEARKLLEEAKES+KAYKDCVS+A+ E EKKECEKLLTPEAKKLLEEEA
Sbjct  979   AEKKECEKLLTPEARKLLEEAKESIKAYKDCVSKARNEKEKKECEKLLTPEAKKLLEEEA  1038

Query  903   kkSVKAYLDCVSQAKTEDEKKECEKLLTPeakkkleeskksvkaYLDCVSQakteaekke  962
             K SVKAYLDCVSQAKTE EKKECEKLLTPEAKKKLEE+KKSVKAYLDCVSQAK E EKKE
Sbjct  1039  KESVKAYLDCVSQAKTEAEKKECEKLLTPEAKKKLEEAKKSVKAYLDCVSQAKNEDEKKE  1098

Query  963   ceklltPEAKKLLEQQALDCLKNAKTEAEKKRCVKDLPKDLQKKVLAKESVKAYLDCVSR  1022
             CEKLLTPEAKKLLEQQALDCLKNAKTEA+KKRCVKDLPKDLQKKVLAKESVKAY DCVSR
Sbjct  1099  CEKLLTPEAKKLLEQQALDCLKNAKTEADKKRCVKDLPKDLQKKVLAKESVKAYKDCVSR  1158

Query  1023  ARNekekkecekLLTPeakkkleeskesvkaYLDCVSRARNekekkecekLLTPeakkkl  1082
             ARNEKEKKECEKLLTPEAKK LEE+K SVKAYLDCVS+A+ E EKKECEKLLTPEAKK L
Sbjct  1159  ARNEKEKKECEKLLTPEAKKLLEEAKKSVKAYLDCVSQAKTEAEKKECEKLLTPEAKKLL  1218

Query  1083  eeskksvkaYLDCVSQakteaekkeceklltPEAKKLLEQ--------------------  1122
             EE+K S+KAY DC+SQA+ E E++ CEKLLTPEA+KLLEQ                    
Sbjct  1219  EEAKESLKAYKDCLSQARNEEERRACEKLLTPEARKLLEQEVKKSVKAYLDCVSQAKTEA  1278

Query  1123  -------------------QALDCLKNAKTEAEKKRCVKDLPKDLQKKVLAKESVKAYLD  1163
                                Q L+CL +A  E E+K C+K+LPKDLQ +VLAKES+KAY D
Sbjct  1279  EKKECEKLLTPEARKFLAKQVLNCLEKAGNEEERKACLKNLPKDLQENVLAKESLKAYKD  1338

Query  1164  CVSRARNekekkeceklltpeakklleeakeslkaYKDCLSQARNEEERRACEKLLTPEA  1223
             C+S+AR                                      NEEERRACEKLLTPEA
Sbjct  1339  CLSQAR--------------------------------------NEEERRACEKLLTPEA  1360

Query  1224  RKLLEQEVKKSVKAYLDCVSRARNekekkecekLLTPEARKFLAKQ-------VLNCLEK  1276
             RKLLEQEVKKSVKAYLDCVSRARNEKEKKECEKLLTPEARKFLAK+       + +CL K
Sbjct  1361  RKLLEQEVKKSVKAYLDCVSRARNEKEKKECEKLLTPEARKFLAKELQQKDKAIKDCL-K  1419

Query  1277  AGNEEERKA---CLKNLPKDLQENVLAKESLKAYKDCLSQARNEEERRACEKLLTPEARK  1333
              ++ ++R A   CL  L+ + + + L     KA  DCL  AR +EE+R C++L +     
Sbjct  1420  NADPNDRAAIMKCLDGLSDEEKLKYLQEAREKAVLDCLKTARTDEEKRKCQNLYSD----  1475

Query  1334  LLEQEVKKSVKAYLDCVSRARNEKEKQECEKLLTPEARKFLAKELQQKDKAIKDCLKN-A  1392
              L QE++          ++  + K++Q     L+   R      L+Q      +CL N  
Sbjct  1476  -LIQEIQ----------NKRTQSKQNQ-----LSKTER------LHQ----ASECLDNLD  1509

Query  1393  DPNDRAAIMKCLDGLSDEEK  1412
             DP D+ AI +CL+GLSD E+
Sbjct  1510  DPTDQQAIEQCLEGLSDSER  1529


 Score =  288 bits (1078),  Expect = 2e-78, Method: Compositional matrix adjust.
 Identities = 271/326 (84%), Positives = 291/326 (90%), Gaps = 6/326 (1%)

Query  1    MNEENDKLETSKKTQQHSPQDLSNEEATEANHFKDLLKEESSDNH--LENSTETQTNFDG  58
            MNEENDKLETSKKTQQHSPQDLSNEEATE NHF D  KE    ++  L+N+TET+TNFDG
Sbjct  1    MNEENDKLETSKKTQQHSPQDLSNEEATEINHFEDSSKESKESSDPYLDNPTETKTNFDG  60

Query  59   DKLEETQTQMDsggnetsessngsLADKLFKKARKLVDNKRPFTQQKNLDEETQELNEEY  118
            DK EETQTQMDSGG+ETSESSNGSLADKLFKKARKLVDNKRPFTQQKNLDEETQELNEE 
Sbjct  61   DKSEETQTQMDSGGDETSESSNGSLADKLFKKARKLVDNKRPFTQQKNLDEETQELNEED  120

Query  119  DQENSEYQEETQTGLIDDETSKKTQQHSPQDLSNEEATEANHFKDLLKEESSDNH--LDN  176
            DQEN+ YQEETQTGLIDDETSKKTQQHSPQDLSNEEATE NHF D  KE    ++  LDN
Sbjct  121  DQENNGYQEETQTGLIDDETSKKTQQHSPQDLSNEEATEINHFEDSSKESKESSDPYLDN  180

Query  177  STETKSNFDGDKLEETQTQIDSGGNETSESSDGSLADKLFKKARKLVDNKRPFTQQKnld  236
            +TETK+NFDGDK EETQTQ+DSGG+ETSESS+GSLADKLFKKARKLVDNKRPFTQQKNLD
Sbjct  181  PTETKTNFDGDKSEETQTQMDSGGDETSESSNGSLADKLFKKARKLVDNKRPFTQQKNLD  240

Query  237  eetqelneeddqennGYQEETQTDLIDDETSKKTQQDSPQYSSNEEATEVNHFEDLLKEE  296
            EETQELNEEDDQENNGYQEETQT+LIDDETSKKTQQ+SPQ  SNEEATE+NHFED  KE 
Sbjct  241  EETQELNEEDDQENNGYQEETQTGLIDDETSKKTQQHSPQDLSNEEATEINHFEDSSKES  300

Query  297  SSDNH--LDNPTETQTNFDGDKSEEI  320
               ++  LDNPTET+TNFDGDKSEE 
Sbjct  301  KESSDPYLDNPTETKTNFDGDKSEET  326

11) HPSAT_04140 in NC_017359


> JQ685133|1|G1|442739051|AGC69785.1|Helicobacter_pylori_J166_isolate_31063-2.8/rOut1|+|1..5853|cagY|-|cag 
pathogenicity island 
protein Y
Length=1950

 Score = 1275 bits (4836),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 1096/1391 (79%), Positives = 1171/1391 (85%), Gaps = 140/1391 (10%)

Query  456   DCLKNAKTDEERKKCLKNIPQD-LQKELLADMSVKAYKDCVSKARNekekkecekLLTPE  514
             +C+ N+   EE   CLK I +  LQ ++    ++ AY+DC+ +A+ E E+  C  L+  E
Sbjct  573   ECISNGGNYEE---CLKLIKDKKLQDQM--KKTLEAYNDCIKNAKTEEERIKCLDLIKDE  627

Query  515   AKKK--LEQQ----VLDCLKNAKTDEERKKCLK-----DLPKDLQSDILAKESVKAYKDC  563
               KK  L+QQ     LDCLKNAKTDEERK CLK     ++   ++ ++  +  ++ YKDC
Sbjct  628   NLKKSLLNQQKVQVALDCLKNAKTDEERKECLKLINDPEIREKFRKELELQKELQEYKDC  687

Query  564   VSQARTEAEKKECeklltpeakklleeeakeSVKAYLDCVSQakteaekkeceklltpea  623
             + +A+TEAEK+EC K L+ EA   L ++A       LDC+ +AKT+ E++EC K +  + 
Sbjct  688   IKNAKTEAEKNECLKGLSKEAIERLKQQA-------LDCLKNAKTDEERNECLKNIPQDL  740

Query  624   kkkleeakksvkaYLDCVSQakteaekkeceklltPEARKLLEQQALDCLKNAKTEAEKK  683
             +K L         Y DCVS+A+ E EK+ECEKLLTPEARK LEQQ LDCLKNAKT+ E+K
Sbjct  741   QKELLADMSVKA-YKDCVSKARNEKEKQECEKLLTPEARKKLEQQVLDCLKNAKTDEERK  799

Query  684   RCVKDLPKDLQKKVLAKESVKA--------------------------------------  705
             +C+KDLPKDLQ  +LAKESVKA                                      
Sbjct  800   KCLKDLPKDLQSDILAKESVKAYKDCVSQAKNEAEKKECEKLLTPEAKKLLEEEAKESVK  859

Query  706   -YLDCVSQakteaekkeceklltpeakklleeakeslkaYKDCVSRARNekekkecekLL  764
              YLDCVSQAKTEAEKKECEKLLTPEA+K LEEAK S+KAY DCVS+A+NE EKKECEKLL
Sbjct  860   AYLDCVSQAKTEAEKKECEKLLTPEARKKLEEAKKSVKAYLDCVSQAKNEDEKKECEKLL  919

Query  765   TPEAKKLLEQQALDCLKNAKTEAEKKRCVKDLPKDLQKKVLAKESVKAYLDCVSQaktea  824
             TPEA+KLLEQQALDCLKNAKT+ E+K+C+KDLPKDLQKKVLAKESVKAYLDCVSQAKTEA
Sbjct  920   TPEARKLLEQQALDCLKNAKTDEERKKCLKDLPKDLQKKVLAKESVKAYLDCVSQAKTEA  979

Query  825   ekkeceklltPEARKLLEEAKESLKAYKDCVSRARNekekkecekLLTPEAKKLLEQEVK  884
             EKKECEKLLTPEARKLLEEAKES+KAYKDCVS+ARNEKEKKECEKLLTPEAKKLLE+E K
Sbjct  980   EKKECEKLLTPEARKLLEEAKESIKAYKDCVSKARNEKEKKECEKLLTPEAKKLLEEEAK  1039

Query  885   --------------------------------------KSVKAYLDCVSQakteaekkec  906
                                                   KSVKAYLDCVSQAK E EKKEC
Sbjct  1040  ESVKAYLDCVSQAKTEAEKKECEKLLTPEAKKKLEEAKKSVKAYLDCVSQAKNEDEKKEC  1099

Query  907   eklltPEARKFLAKQALDCLKNAKTEAEKKRCVKDLPKDLQKKVLAKESVKAY-------  959
             EKLLTPEA+K+L +QALDCLKNAKTEA+KKRCVKDLPKDLQKKVLAKESVKAY       
Sbjct  1100  EKLLTPEAKKLLEQQALDCLKNAKTEADKKRCVKDLPKDLQKKVLAKESVKAYKDCVSRA  1159

Query  960   -------------------------------LDCVSRARNekekkecekLLTPEARKLLE  988
                                            LDCVS+A+ E EKKECEKLLTPEA+KLLE
Sbjct  1160  RNEKEKKECEKLLTPEAKKLLEEAKKSVKAYLDCVSQAKTEAEKKECEKLLTPEAKKLLE  1219

Query  989   EAKESLKAYKDCLSQARNEEERKACEKLLTPEARKLLEQEVKKSVKAYLDCVSQakteae  1048
             EAKESLKAYKDCLSQARNEEER+ACEKLLTPEARKLLEQEVKKSVKAYLDCVSQAKTEAE
Sbjct  1220  EAKESLKAYKDCLSQARNEEERRACEKLLTPEARKLLEQEVKKSVKAYLDCVSQAKTEAE  1279

Query  1049  kkeceklltPEARKFLAKQALSCLEKARNEEERKACLKNIPKDLQKNVLAKESLKAYKDC  1108
             KKECEKLLTPEARKFLAKQ L+CLEKA NEEERKACLKN+PKDLQ NVLAKESLKAYKDC
Sbjct  1280  KKECEKLLTPEARKFLAKQVLNCLEKAGNEEERKACLKNLPKDLQENVLAKESLKAYKDC  1339

Query  1109  LSQARNEEERKACEKLLTPEARKLLEQEVKKSVKAYLDCVSRARNEKEKQECEKLLTPEA  1168
             LSQARNEEER+ACEKLLTPEARKLLEQEVKKSVKAYLDCVSRARNEKEK+ECEKLLTPEA
Sbjct  1340  LSQARNEEERRACEKLLTPEARKLLEQEVKKSVKAYLDCVSRARNEKEKKECEKLLTPEA  1399

Query  1169  RKFLAKELQQKDKAIKDCLKNADPNDRAAIMKCLDGLSDEEKLKYLQEAREKAVLDCLKT  1228
             RKFLAKELQQKDKAIKDCLKNADPNDRAAIMKCLDGLSDEEKLKYLQEAREKAVLDCLKT
Sbjct  1400  RKFLAKELQQKDKAIKDCLKNADPNDRAAIMKCLDGLSDEEKLKYLQEAREKAVLDCLKT  1459

Query  1229  ARTDEEKRKCQNLYSDLIQEIQNKRTQSKQNQLSKTERLHQASECLDNLDDPTDQEAIEQ  1288
             ARTDEEKRKCQNLYSDLIQEIQNKRTQSKQNQLSKTERLHQASECLDNLDDPTDQ+AIEQ
Sbjct  1460  ARTDEEKRKCQNLYSDLIQEIQNKRTQSKQNQLSKTERLHQASECLDNLDDPTDQQAIEQ  1519

Query  1289  CLEGLSDSERALILGIKRQADEVDLIYSDLRNRKTFDNMAAKGYPLLPMDFKNGGDIATI  1348
             CLEGLSDSERALILGIKRQADEVD IYSDLRNRKTFDNMAAKGYPLLPMDFKNGGDIATI
Sbjct  1520  CLEGLSDSERALILGIKRQADEVDRIYSDLRNRKTFDNMAAKGYPLLPMDFKNGGDIATI  1579

Query  1349  NATNVDADKIASDNPIYASIEPDITKQYETEKTIkdknleaklakalggnkkdddkeksk  1408
             NATNVDADKIASDNPIYASIEPDITKQYETEKTIKDKNLEAKLAKALGGNKKDDDKEKSK
Sbjct  1580  NATNVDADKIASDNPIYASIEPDITKQYETEKTIKDKNLEAKLAKALGGNKKDDDKEKSK  1639

Query  1409  ksTAEARVESNKIDKDVAETAKNISEIALKNKKEKSGEFVDENGNPIddkkktekqdetS  1468
             KSTAEA+VESNKIDKDVAETAKNISEIALKNKKEK+GEFVDENGNPIDDKKK+EKQDETS
Sbjct  1640  KSTAEAKVESNKIDKDVAETAKNISEIALKNKKEKNGEFVDENGNPIDDKKKAEKQDETS  1699

Query  1469  PVKQAFIGKSDPTFVLAQYTPIEITLTSKVDATLTGIVSGVVAKDVWNMNGTMILLDKGT  1528
             PVKQAFIGKSDPTFVLAQYTPIEITLTSKVDATLTGIVSGVVAKDVWNMNGTMILLDKGT
Sbjct  1700  PVKQAFIGKSDPTFVLAQYTPIEITLTSKVDATLTGIVSGVVAKDVWNMNGTMILLDKGT  1759

Query  1529  KVYGNYQSVKGGTPIMTRLMIVFTKAITPDGVIIPLANAQAAGMLGEAGVDGYVNNHFMK  1588
             KVYGNYQSVKGGTPIMTRLMIVFTKAITPDGVIIPLANAQAAGMLGEAGVDGYVNNHFMK
Sbjct  1760  KVYGNYQSVKGGTPIMTRLMIVFTKAITPDGVIIPLANAQAAGMLGEAGVDGYVNNHFMK  1819

Query  1589  RIGFAVIASVVNSFLQTAPIIALDKLIGLGKGRSERTPEFNYALGQAINGSMQSSAQMSN  1648
             RIGFAVIASVVNSFLQTAPIIALDKLIGLGKGRSERTPEFNYALGQAINGSMQSSAQMSN
Sbjct  1820  RIGFAVIASVVNSFLQTAPIIALDKLIGLGKGRSERTPEFNYALGQAINGSMQSSAQMSN  1879

Query  1649  QILGQLMNIPPSFYKNEGDSIKILTMDDIDFSGVYDVKITNKSVVDEIIKQSTKTLSREH  1708
             QILGQLMNIPPSFYKNEGDSIKILTMDDIDFSGVYDVKITNKSVVDEIIKQSTKTLSREH
Sbjct  1880  QILGQLMNIPPSFYKNEGDSIKILTMDDIDFSGVYDVKITNKSVVDEIIKQSTKTLSREH  1939

Query  1709  EEITTSPKGGN  1719
             EEITTSPKGGN
Sbjct  1940  EEITTSPKGGN  1950


 Score =  920 bits (3487),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 998/1294 (78%), Positives = 1078/1294 (84%), Gaps = 125/1294 (9%)

Query  9     ETSKKTQQHSPQDLSNEETIKANHFedsskeskensdHHLDNSTETKTNFDGEKSEETQT  68
             ETSKKTQQHSPQDLSNEE+   NHFEDSSKESKE+SD  LDN+TETKTNFDG+KSEETQT
Sbjct  269   ETSKKTQQHSPQDLSNEEATEINHFEDSSKESKESSDPYLDNPTETKTNFDGDKSEETQT  328

Query  69    QMDSGDNETSESSN--LADKLFKKARKLVDNKRPFTQQKNLdeeiqepneeddqennGYQ  126
             QMDSG++ETSESSN  LADKLFKKARKLVDNKRPFTQQKNLDEE QE NEEDDQENNGYQ
Sbjct  329   QMDSGGDETSESSNGSLADKLFKKARKLVDNKRPFTQQKNLDEETQELNEEDDQENNGYQ  388

Query  127   EEIQMDLIDDETSKKTQQHSPQDLSNEETIKANHFedsskeskensdHHLDNSTETKTNF  186
             EE Q +LIDDETSKKTQQHSPQDLSNEE+   NHFEDSSKESKE+SD  LDN+TETKTNF
Sbjct  389   EETQTGLIDDETSKKTQQHSPQDLSNEEATEINHFEDSSKESKESSDPYLDNPTETKTNF  448

Query  187   DGEKSEEITNDSNDQEiikgskkkyiiggivvavliviilFSRSIFHYFIPLEDKSSRFS  246
             D +KSEEITNDSNDQEIIKGSKKKYIIGGIVVAVLIVIILFSRSIFHYF+PLEDKSSRFS
Sbjct  449   DEDKSEEITNDSNDQEIIKGSKKKYIIGGIVVAVLIVIILFSRSIFHYFMPLEDKSSRFS  508

Query  247   KDRNLYVNDEIQIRQEYNRLLKERNEKGNMIDKNLFFNDDPNRTLYNYLNIAEIEDKNPL  306
             KDRNLYVNDEIQIRQEYNRLLKERNEKGNMIDKNLFFNDDPNRTLYNYLNIAEIEDKNPL
Sbjct  509   KDRNLYVNDEIQIRQEYNRLLKERNEKGNMIDKNLFFNDDPNRTLYNYLNIAEIEDKNPL  568

Query  307   RAFYECISNGGNYEEClklikdkklqdqmkktlEAYNDCIKNAKTEEERIKCLDLIKDEN  366
             RAFYECISNGGNYEECLKLIKDKKLQDQMKKTLEAYNDCIKNAKTEEERIKCLDLIKDEN
Sbjct  569   RAFYECISNGGNYEECLKLIKDKKLQDQMKKTLEAYNDCIKNAKTEEERIKCLDLIKDEN  628

Query  367   LKKSLLNQQKVQVALDCLKNAKTDEERNECLKLINDPEIrekfrkelelqkelqeYKDCI  426
             LKKSLLNQQKVQVALDCLKNAKTDEER+ECLKLINDPEIREKFRKELELQKELQEYKDCI
Sbjct  629   LKKSLLNQQKVQVALDCLKNAKTDEERKECLKLINDPEIREKFRKELELQKELQEYKDCI  688

Query  427   KNAKTEAEKNECLKGLSKEAIERLKQQALDCLKNAKTDEERKKCLKNIPQDLQKELLADM  486
             KNAKTEAEKNECLKGLSKEAIERLKQQALDCLKNAKTDEER+ CLKNIPQDLQKELLADM
Sbjct  689   KNAKTEAEKNECLKGLSKEAIERLKQQALDCLKNAKTDEERNECLKNIPQDLQKELLADM  748

Query  487   SVKAYKDCVSKARNekekkecekLLTPEAKKKLEQQVLDCLKNAKTDEERKKCLKDLPKD  546
             SVKAYKDCVSKARNEKEK+ECEKLLTPEA+KKLEQQVLDCLKNAKTDEERKKCLKDLPKD
Sbjct  749   SVKAYKDCVSKARNEKEKQECEKLLTPEARKKLEQQVLDCLKNAKTDEERKKCLKDLPKD  808

Query  547   LQSDILAKESVKAYKDCVSQARTEAEKKECeklltpeakklleeeakeSVKAYLDCVSQa  606
             LQSDILAKESVKAYKDCVSQA+ EAEKKECEKLLTPEAKKLLEEEAKESVKAYLDCVSQA
Sbjct  809   LQSDILAKESVKAYKDCVSQAKNEAEKKECEKLLTPEAKKLLEEEAKESVKAYLDCVSQA  868

Query  607   kteaekkeceklltpeakkkleeakksvkaYLDCVSQakteaekkeceklltPEARKLLE  666
             KTEAEKKECEKLLTPEA+KKLEEAKKSVKAYLDCVSQAK E EKKECEKLLTPEARKLLE
Sbjct  869   KTEAEKKECEKLLTPEARKKLEEAKKSVKAYLDCVSQAKNEDEKKECEKLLTPEARKLLE  928

Query  667   QQALDCLKNAKTEAEKKRCVKDLPKDLQKKVLAKESVKAYLDCVSQakteaekkecekll  726
             QQALDCLKNAKT+ E+K+C+KDLPKDLQKKVLAKESVKAYLDCVSQAKTEAEKKECEKLL
Sbjct  929   QQALDCLKNAKTDEERKKCLKDLPKDLQKKVLAKESVKAYLDCVSQAKTEAEKKECEKLL  988

Query  727   tpeakklleeakeslkaYKDCVSRARNekekkecekLLTPEAKKLLEQQA-------LDC  779
             TPEA+KLLEEAKES+KAYKDCVS+ARNEKEKKECEKLLTPEAKKLLE++A       LDC
Sbjct  989   TPEARKLLEEAKESIKAYKDCVSKARNEKEKKECEKLLTPEAKKLLEEEAKESVKAYLDC  1048

Query  780   LKNAKTEAEKKRCVKDL-PKDLQKKVLAKESVKAYLDCVSQakteaekkeceklltPEAR  838
             + +AKTEAEKK C K L P   +K   AK SVKAYLDCVSQAK E EKKECEKLLTPEA+
Sbjct  1049  VSQAKTEAEKKECEKLLTPEAKKKLEEAKKSVKAYLDCVSQAKNEDEKKECEKLLTPEAK  1108

Query  839   KLLEE-------------------------------AKESLKAYKDCVSRARNekekkec  867
             KLLE+                               AKES+KAYKDCVSRARNEKEKKEC
Sbjct  1109  KLLEQQALDCLKNAKTEADKKRCVKDLPKDLQKKVLAKESVKAYKDCVSRARNEKEKKEC  1168

Query  868   ekLLTPEAKKLLEQEVKKSVKAYLDCVSQakteaekkeceklltPEARKFL--AKQAL--  923
             EKLLTPEAKKLLE E KKSVKAYLDCVSQAKTEAEKKECEKLLTPEA+K+L  AK++L  
Sbjct  1169  EKLLTPEAKKLLE-EAKKSVKAYLDCVSQAKTEAEKKECEKLLTPEAKKLLEEAKESLKA  1227

Query  924   --DCLKNAKTEAEKKRCVKDLPKDLQKKVLAKE---SVKAYLDCVSRARNekekkecekL  978
               DCL +A+ E E++ C K L  +  +K+L +E   SVKAYLDCVS+A+ E EKKECEKL
Sbjct  1228  YKDCLSQARNEEERRACEKLLTPE-ARKLLEQEVKKSVKAYLDCVSQAKTEAEKKECEKL  1286

Query  979   LTPEARKLLEE-------------------------------AKESLKAYKDCLSQARNE  1007
             LTPEARK+L                                 AKESLKAYKDCLSQARNE
Sbjct  1287  LTPEARKFLAKQVLNCLEKAGNEEERKACLKNLPKDLQENVLAKESLKAYKDCLSQARNE  1346

Query  1008  EERKACEKLLTPEARKLLEQEVKKSVKAYLDCVSQakteaekkeceklltPEARKFLAKQ  1067
             EER+ACEKLLTPEARKLLEQEVKKSVKAYLDCVS+A+ E EKKECEKLLTPEARKFLAK+
Sbjct  1347  EERRACEKLLTPEARKLLEQEVKKSVKAYLDCVSRARNEKEKKECEKLLTPEARKFLAKE  1406

Query  1068  -------ALSCLEKARNEEERKA---CLKNIPKDLQKNVLAKESLKAYKDCLSQARNEEE  1117
                       CL K  + ++R A   CL  ++ + + + L     KA  DCL  AR +EE
Sbjct  1407  LQQKDKAIKDCL-KNADPNDRAAIMKCLDGLSDEEKLKYLQEAREKAVLDCLKTARTDEE  1465

Query  1118  RKACEKLLTPEARKLLEQEVKKSVKAYLDCVSRARNEKEKQECEKLLTPEARKFLAKELQ  1177
             ++ C++L +      L QE++          ++  + K++Q     L+   R      L+
Sbjct  1466  KRKCQNLYSD-----LIQEIQ----------NKRTQSKQNQ-----LSKTER------LH  1499

Query  1178  QKDKAIKDCLKN-ADPNDRAAIMKCLDGLSDEEK  1210
             Q      +CL N  DP D+ AI +CL+GLSD E+
Sbjct  1500  Q----ASECLDNLDDPTDQQAIEQCLEGLSDSER  1529


 Score =  173 bits (642),  Expect = 6e-44, Method: Compositional matrix adjust.
 Identities = 168/199 (85%), Positives = 180/199 (91%), Gaps = 2/199 (1%)

Query  1    MNEENDKLETSKKTQQHSPQDLSNEETIKANHFedsskeskensdHHLDNSTETKTNFDG  60
            MNEENDKLETSKKTQQHSPQDLSNEE+   NHFEDSSKESKE+SD  LDN+TETKTNFDG
Sbjct  1    MNEENDKLETSKKTQQHSPQDLSNEEATEINHFEDSSKESKESSDPYLDNPTETKTNFDG  60

Query  61   EKSEETQTQMDSGDNETSESSN--LADKLFKKARKLVDNKRPFTQQKNLdeeiqepneed  118
            +KSEETQTQMDSG++ETSESSN  LADKLFKKARKLVDNKRPFTQQKNLDEE QE NEED
Sbjct  61   DKSEETQTQMDSGGDETSESSNGSLADKLFKKARKLVDNKRPFTQQKNLDEETQELNEED  120

Query  119  dqennGYQEEIQMDLIDDETSKKTQQHSPQDLSNEETIKANHFedsskeskensdHHLDN  178
            DQENNGYQEE Q +LIDDETSKKTQQHSPQDLSNEE+   NHFEDSSKESKE+SD  LDN
Sbjct  121  DQENNGYQEETQTGLIDDETSKKTQQHSPQDLSNEEATEINHFEDSSKESKESSDPYLDN  180

Query  179  STETKTNFDGEKSEEITND  197
            +TETKTNFDG+KSEE   +
Sbjct  181  PTETKTNFDGDKSEETQTQ  199


 Score =  163 bits (602),  Expect = 7e-41, Method: Compositional matrix adjust.
 Identities = 160/191 (84%), Positives = 172/191 (91%), Gaps = 2/191 (1%)

Query  9    ETSKKTQQHSPQDLSNEETIKANHFedsskeskensdHHLDNSTETKTNFDGEKSEETQT  68
            ETSKKTQQHSPQDLSNEE+   NHFEDSSKESKE+SD  LDN+TETKTNFDG+KSEETQT
Sbjct  139  ETSKKTQQHSPQDLSNEEATEINHFEDSSKESKESSDPYLDNPTETKTNFDGDKSEETQT  198

Query  69   QMDSGDNETSESSN--LADKLFKKARKLVDNKRPFTQQKNLdeeiqepneeddqennGYQ  126
            QMDSG++ETSESSN  LADKLFKKARKLVDNKRPFTQQKNLDEE QE NEEDDQENNGYQ
Sbjct  199  QMDSGGDETSESSNGSLADKLFKKARKLVDNKRPFTQQKNLDEETQELNEEDDQENNGYQ  258

Query  127  EEIQMDLIDDETSKKTQQHSPQDLSNEETIKANHFedsskeskensdHHLDNSTETKTNF  186
            EE Q +LIDDETSKKTQQHSPQDLSNEE+   NHFEDSSKESKE+SD  LDN+TETKTNF
Sbjct  259  EETQTGLIDDETSKKTQQHSPQDLSNEEATEINHFEDSSKESKESSDPYLDNPTETKTNF  318

Query  187  DGEKSEEITND  197
            DG+KSEE   +
Sbjct  319  DGDKSEETQTQ  329

12) cagY in NC_017367


> JQ685133|1|G1|442739051|AGC69785.1|Helicobacter_pylori_J166_isolate_31063-2.8/rOut1|+|1..5853|cagY|-|cag 
pathogenicity island 
protein Y
Length=1950

 Score = 1255 bits (4761),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 1122/1464 (77%), Positives = 1206/1464 (83%), Gaps = 168/1464 (11%)

Query  421   LQEYKDCIKNAKTEADKNECLKGLSKEAIERLKQQAL----DCLKNAKTDEERNECLKNI  476
             L+ + +CI N+   ++ +ECLK +    ++   +++L    DC+KNAKT+EER  CL  I
Sbjct  568   LRAFYECISNG---GNYEECLKLIKDKKLQDQMKKTLEAYNDCIKNAKTEEERIKCLDLI  624

Query  477   -PQDLQKELLADMSVKAYKDCVSKARNekekkecekLLTPEAKKKLEQQVLDCLKNAKTD  535
               ++L+K LL +  V                                Q  LDCLKNAKTD
Sbjct  625   KDENLKKSLLNQQKV--------------------------------QVALDCLKNAKTD  652

Query  536   EERKKCLK-----DLPKDLQSDILAKESLKAYKDCVSQAKTEAEKQECeklltpeakkll  590
             EERK CLK     ++   ++ ++  +  L+ YKDC+ +AKTEAEK+EC K L+ EA   L
Sbjct  653   EERKECLKLINDPEIREKFRKELELQKELQEYKDCIKNAKTEAEKNECLKGLSKEAIERL  712

Query  591   eeeakeSVKAYLDCVSQakteaekkeceklltpeakkkleeakksvkaYLDCVSQaktea  650
              ++A       LDC+ +AKT+ E++EC K +  + +K L         Y DCVS+A+ E 
Sbjct  713   KQQA-------LDCLKNAKTDEERNECLKNIPQDLQKELLADMSVKA-YKDCVSKARNEK  764

Query  651   ekkeceklltPEAKKLLEQQALDCLKNAKTEAEKKRCVKDLPKDLQKKVLAKESLKAYKD  710
             EK+ECEKLLTPEA+K LEQQ LDCLKNAKT+ E+K+C+KDLPKDLQ  +LAKES+KAYKD
Sbjct  765   EKQECEKLLTPEARKKLEQQVLDCLKNAKTDEERKKCLKDLPKDLQSDILAKESVKAYKD  824

Query  711   CVSRARNEKEKQECeklltpeakklleeakkslkaykDCVSRARNEKEKQECeklltpea  770
                                                   CVS+A+NE EK+ECEKLLTPEA
Sbjct  825   --------------------------------------CVSQAKNEAEKKECEKLLTPEA  846

Query  771   kklleeeakeSVKAYLDCVSQakteaekkeceklltpeakkkleeakksvkaYLDCVSQa  830
             KKLLEEEAKESVKAYLDCVSQAKTEAEKKECEKLLTPEA+KKLEEAKKSVKAYLDCVSQA
Sbjct  847   KKLLEEEAKESVKAYLDCVSQAKTEAEKKECEKLLTPEARKKLEEAKKSVKAYLDCVSQA  906

Query  831   kteaekkeceklltPEAKKLLEQQALDCLKNAKTEAEKKRCVKDLPKDLQKKVLAKES--  888
             K E EKKECEKLLTPEA+KLLEQQALDCLKNAKT+ E+K+C+KDLPKDLQKKVLAKES  
Sbjct  907   KNEDEKKECEKLLTPEARKLLEQQALDCLKNAKTDEERKKCLKDLPKDLQKKVLAKESVK  966

Query  889   ------------------------------------LKAYKDCVSRARNEKEKQECekll  912
                                                 +KAYKDCVS+ARNEKEK+ECEKLL
Sbjct  967   AYLDCVSQAKTEAEKKECEKLLTPEARKLLEEAKESIKAYKDCVSKARNEKEKKECEKLL  1026

Query  913   tpeakklleeakkslkay-kDCVSRARNEKEKQECeklltpeakklleeakkslkaykDC  971
             TPEAKKLLEE  K       DCVS+A+ E EK+ECEKLLTPEAKK LEEAKKS+KAY DC
Sbjct  1027  TPEAKKLLEEEAKESVKAYLDCVSQAKTEAEKKECEKLLTPEAKKKLEEAKKSVKAYLDC  1086

Query  972   VSRARNEKEKQECEKLLTPEAKKLLEQQALDCLKNAKTEAEKKRCVKDLPKDLQKKVLAK  1031
             VS+A+NE EK+ECEKLLTPEAKKLLEQQALDCLKNAKTEA+KKRCVKDLPKDLQKKVLAK
Sbjct  1087  VSQAKNEDEKKECEKLLTPEAKKLLEQQALDCLKNAKTEADKKRCVKDLPKDLQKKVLAK  1146

Query  1032  ESVKAY--------------------------------------LDCVSRARNEKEKQEC  1053
             ESVKAY                                      LDCVS+A+ E EK+EC
Sbjct  1147  ESVKAYKDCVSRARNEKEKKECEKLLTPEAKKLLEEAKKSVKAYLDCVSQAKTEAEKKEC  1206

Query  1054  eklltpeakklleeakeslkaYKDCLSQARNEEERRACEKLLTPEAKKLLEQEVKKSVKA  1113
             EKLLTPEAKKLLEEAKESLKAYKDCLSQARNEEERRACEKLLTPEA+KLLEQEVKKSVKA
Sbjct  1207  EKLLTPEAKKLLEEAKESLKAYKDCLSQARNEEERRACEKLLTPEARKLLEQEVKKSVKA  1266

Query  1114  YLDCVSKARNEREKQECEKLLTPEARKFLAKQVLSCLEKARNEEERKACLKNIPKDLQKN  1173
             YLDCVS+A+ E EK+ECEKLLTPEARKFLAKQVL+CLEKA NEEERKACLKN+PKDLQ N
Sbjct  1267  YLDCVSQAKTEAEKKECEKLLTPEARKFLAKQVLNCLEKAGNEEERKACLKNLPKDLQEN  1326

Query  1174  VLAKESLKAYKDCLSQARNEEERRACEKLLTPEARKLLEQEVKKSVKAYLDCVSRARNEK  1233
             VLAKESLKAYKDCLSQARNEEERRACEKLLTPEARKLLEQEVKKSVKAYLDCVSRARNEK
Sbjct  1327  VLAKESLKAYKDCLSQARNEEERRACEKLLTPEARKLLEQEVKKSVKAYLDCVSRARNEK  1386

Query  1234  EKQECEKLLTPEARKFLAKELQQKDKAIKDCLKNADPNDRAAIMKCLDGLSDEEKLKYLQ  1293
             EK+ECEKLLTPEARKFLAKELQQKDKAIKDCLKNADPNDRAAIMKCLDGLSDEEKLKYLQ
Sbjct  1387  EKKECEKLLTPEARKFLAKELQQKDKAIKDCLKNADPNDRAAIMKCLDGLSDEEKLKYLQ  1446

Query  1294  EAREKAVLDCLKTARTDEEKRKCQNLYSDLIQEIQNKRAQSKQNQLSKTERLHQASECLD  1353
             EAREKAVLDCLKTARTDEEKRKCQNLYSDLIQEIQNKR+QSKQNQLSKTERLHQASECLD
Sbjct  1447  EAREKAVLDCLKTARTDEEKRKCQNLYSDLIQEIQNKRTQSKQNQLSKTERLHQASECLD  1506

Query  1354  NLDDPTDQEAIEQCLEGLSDSERALILGIKRQADEVDLIYSDLRNRKTFDNMAAKGYPLL  1413
             NLDDPTDQ+AIEQCLEGLSDSERALILGIKRQADEVD IYSDLRNRKTFDNMAAKGYPLL
Sbjct  1507  NLDDPTDQQAIEQCLEGLSDSERALILGIKRQADEVDRIYSDLRNRKTFDNMAAKGYPLL  1566

Query  1414  PMDFKNGGDIATINATNVDADKIASDNPIYASIEPDITKQYETEKTIkdknleaklakal  1473
             PMDFKNGGDIATINATNVDADKIASDNPIYASIEPDITKQYETEKTIKDKNLEAKLAKAL
Sbjct  1567  PMDFKNGGDIATINATNVDADKIASDNPIYASIEPDITKQYETEKTIKDKNLEAKLAKAL  1626

Query  1474  ggnkkdddkekskkstaeakvesNKIDKDVAETAKNISEIALKNKKEKNGEFVDENGNPI  1533
             GGNKKDDDKEKSKKSTAEAKVESNKIDKDVAETAKNISEIALKNKKEKNGEFVDENGNPI
Sbjct  1627  GGNKKDDDKEKSKKSTAEAKVESNKIDKDVAETAKNISEIALKNKKEKNGEFVDENGNPI  1686

Query  1534  DDKKKTETQDETSPVKQAFIGKSDPTFVLAQYTPIEITLTSKVDATLTGIVSGVVAKDVW  1593
             DDKKK+E QDETSPVKQAFIGKSDPTFVLAQYTPIEITLTSKVDATLTGIVSGVVAKDVW
Sbjct  1687  DDKKKAEKQDETSPVKQAFIGKSDPTFVLAQYTPIEITLTSKVDATLTGIVSGVVAKDVW  1746

Query  1594  NMNGTMILLDKGTKVYGNYQSVKGGTPIMTRLMIVFTKAITPDGVIIPLANAQAAGMLGE  1653
             NMNGTMILLDKGTKVYGNYQSVKGGTPIMTRLMIVFTKAITPDGVIIPLANAQAAGMLGE
Sbjct  1747  NMNGTMILLDKGTKVYGNYQSVKGGTPIMTRLMIVFTKAITPDGVIIPLANAQAAGMLGE  1806

Query  1654  AGVDGYVNNHFMKRIGFAVIASVVNSFLQTAPIIALDKLIGLGKGRSERTPEFNYALGQA  1713
             AGVDGYVNNHFMKRIGFAVIASVVNSFLQTAPIIALDKLIGLGKGRSERTPEFNYALGQA
Sbjct  1807  AGVDGYVNNHFMKRIGFAVIASVVNSFLQTAPIIALDKLIGLGKGRSERTPEFNYALGQA  1866

Query  1714  INGSMQSSAQMSNQILGQLMNIPPSFYKNEGDSIKILTMDDIDFSGVYDVKITNKSVVDE  1773
             INGSMQSSAQMSNQILGQLMNIPPSFYKNEGDSIKILTMDDIDFSGVYDVKITNKSVVDE
Sbjct  1867  INGSMQSSAQMSNQILGQLMNIPPSFYKNEGDSIKILTMDDIDFSGVYDVKITNKSVVDE  1926

Query  1774  IIKQSTKTLSREHEEITTSPKGGN  1797
             IIKQSTKTLSREHEEITTSPKGGN
Sbjct  1927  IIKQSTKTLSREHEEITTSPKGGN  1950


 Score =  960 bits (3638),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 1062/1298 (82%), Positives = 1145/1298 (89%), Gaps = 55/1298 (4%)

Query  9     ETSKKTQQHSPQDLSNEEATEANHFedsskeskessdHHLDNPTETKTNFDEYELEETQT  68
             ETSKKTQQHSPQDLSNEEATE NHFEDSSKESKESSD  LDNPTETKTNFD    EETQT
Sbjct  269   ETSKKTQQHSPQDLSNEEATEINHFEDSSKESKESSDPYLDNPTETKTNFDGDKSEETQT  328

Query  69    QMDsggnetsessngsLADKLFKKARKLVDNKKPFTQQKNLdeeiqepneeddqennGYQ  128
             QMDSGG+ETSESSNGSLADKLFKKARKLVDNK+PFTQQKNLDEE QE NEEDDQENNGYQ
Sbjct  329   QMDSGGDETSESSNGSLADKLFKKARKLVDNKRPFTQQKNLDEETQELNEEDDQENNGYQ  388

Query  129   EETQMDLIDDETSKKTQQHSPQDLSNEEATEANHFedsskeskessdHHLDNYTEAKTNF  188
             EETQ +LIDDETSKKTQQHSPQDLSNEEATE NHFEDSSKESKESSD  LDN TE+KTNF
Sbjct  389   EETQTGLIDDETSKKTQQHSPQDLSNEEATEINHFEDSSKESKESSDPYLDNPTETKTNF  448

Query  189   DEYESEEITNDSNDQEiikgskkkyiiggivvavliviilFSRSIFHYFIPLEDKSSRFS  248
             DE  SEEITNDSNDQEIIKGSKKKYIIGGIVVAVLIVIILFSRSIFHYF+PLEDKSSRFS
Sbjct  449   DEDKSEEITNDSNDQEIIKGSKKKYIIGGIVVAVLIVIILFSRSIFHYFMPLEDKSSRFS  508

Query  249   KDRNLYVNDEIQIRQEYNRLLKERNEKGNMIDKNLFFNDDPNRTLYNYLNIAEIEDKNPL  308
             KDRNLYVNDEIQIRQEYNRLLKERNEKGNMIDKNLFFNDDPNRTLYNYLNIAEIEDKNPL
Sbjct  509   KDRNLYVNDEIQIRQEYNRLLKERNEKGNMIDKNLFFNDDPNRTLYNYLNIAEIEDKNPL  568

Query  309   RAFYECISNGGNYEEClklikdkklqdqmkktlEAYKDCIKNAKTEEERIKCLDLIKDEN  368
             RAFYECISNGGNYEECLKLIKDKKLQDQMKKTLEAY+DCIKNAKTEEERIKCLDLIKDEN
Sbjct  569   RAFYECISNGGNYEECLKLIKDKKLQDQMKKTLEAYNDCIKNAKTEEERIKCLDLIKDEN  628

Query  369   LKKSLLNQQKVQVALDCLKNAKTDEERNECLKLINDPEIREKFRKELGLQKELQEYKDCI  428
             LKKSLLNQQKVQVALDCLKNAKTDEER+ECLKLINDPEIREKFRKEL LQKELQEYKDCI
Sbjct  629   LKKSLLNQQKVQVALDCLKNAKTDEERKECLKLINDPEIREKFRKELELQKELQEYKDCI  688

Query  429   KNAKTEADKNECLKGLSKEAIERLKQQALDCLKNAKTDEERNECLKNIPQDLQKELLADM  488
             KNAKTEA+KNECLKGLSKEAIERLKQQALDCLKNAKTDEERNECLKNIPQDLQKELLADM
Sbjct  689   KNAKTEAEKNECLKGLSKEAIERLKQQALDCLKNAKTDEERNECLKNIPQDLQKELLADM  748

Query  489   SVKAYKDCVSKARNekekkecekLLTPEAKKKLEQQVLDCLKNAKTDEERKKCLKDLPKD  548
             SVKAYKDCVSKARNEKEK+ECEKLLTPEA+KKLEQQVLDCLKNAKTDEERKKCLKDLPKD
Sbjct  749   SVKAYKDCVSKARNEKEKQECEKLLTPEARKKLEQQVLDCLKNAKTDEERKKCLKDLPKD  808

Query  549   LQSDILAKESLKAYKDCVSQAKTEAEKQECeklltpeakklleeeakeSVKAYLDCVSQa  608
             LQSDILAKES+KAYKDCVSQAK EAEK+ECEKLLTPEAKKLLEEEAKESVKAYLDCVSQA
Sbjct  809   LQSDILAKESVKAYKDCVSQAKNEAEKKECEKLLTPEAKKLLEEEAKESVKAYLDCVSQA  868

Query  609   kteaekkeceklltpeakkkleeakksvkaYLDCVSQakteaekkeceklltPEAKKLLE  668
             KTEAEKKECEKLLTPEA+KKLEEAKKSVKAYLDCVSQAK E EKKECEKLLTPEA+KLLE
Sbjct  869   KTEAEKKECEKLLTPEARKKLEEAKKSVKAYLDCVSQAKNEDEKKECEKLLTPEARKLLE  928

Query  669   QQALDCLKNAKTEAEKKRCVKDLPKDLQKKVLAKESLKAYKDCVSRARNEKEKQECekll  728
             QQALDCLKNAKT+ E+K+C+KDLPKDLQKKVLAKES+KAY DCVS+A+ E EK+ECEKLL
Sbjct  929   QQALDCLKNAKTDEERKKCLKDLPKDLQKKVLAKESVKAYLDCVSQAKTEAEKKECEKLL  988

Query  729   tpeakklleeakkslkaykDCVSRARNEKEKQECeklltpeakklleeeakeSVKAYLDC  788
             TPEA+KLLEEAK S+KAYKDCVS+ARNEKEK+ECEKLLTPEAKKLLEEEAKESVKAYLDC
Sbjct  989   TPEARKLLEEAKESIKAYKDCVSKARNEKEKKECEKLLTPEAKKLLEEEAKESVKAYLDC  1048

Query  789   VSQakteaekkeceklltpeakkkleeakksvkaYLDCVSQakteaekkeceklltPEAK  848
             VSQAKTEAEKKECEKLLTPEAKKKLEEAKKSVKAYLDCVSQAK E EKKECEKLLTPEAK
Sbjct  1049  VSQAKTEAEKKECEKLLTPEAKKKLEEAKKSVKAYLDCVSQAKNEDEKKECEKLLTPEAK  1108

Query  849   KLLEQQALDCLKNAKTEAEKKRCVKDLPKDLQKKVLAKESLKAYKDCVSRARNEKEKQEC  908
             KLLEQQALDCLKNAKTEA+KKRCVKDLPKDLQKKVLAKES+KAYKDCVSRARNEKEK+EC
Sbjct  1109  KLLEQQALDCLKNAKTEADKKRCVKDLPKDLQKKVLAKESVKAYKDCVSRARNEKEKKEC  1168

Query  909   eklltpeakklleeakkslkaykDCVSRARNEKEKQECeklltpeakklleeakkslkay  968
             EKLLTPEAKKLLEEAKKS+KAY DCVS+A+ E EK+ECEKLLTPEAKKLLEEAK SLKAY
Sbjct  1169  EKLLTPEAKKLLEEAKKSVKAYLDCVSQAKTEAEKKECEKLLTPEAKKLLEEAKESLKAY  1228

Query  969   kDCVSRARNEKEKQECEKLLTPEAKKLLEQQA-------LDCLKNAKTEAEKKRCVKDLP  1021
             KDC+S+ARNE E++ CEKLLTPEA+KLLEQ+        LDC+ +AKTEAEKK C K L 
Sbjct  1229  KDCLSQARNEEERRACEKLLTPEARKLLEQEVKKSVKAYLDCVSQAKTEAEKKECEKLLT  1288

Query  1022  KDLQKKVLAKESVKAYLDCVSRARNEKEKQECeklltpeakklleeakeslkaYKDCLSQ  1081
              +  +K LAK+     L+C+ +A NE E++ C     P   +    AKESLKAYKDCLSQ
Sbjct  1289  PE-ARKFLAKQV----LNCLEKAGNEEERKAC-LKNLPKDLQENVLAKESLKAYKDCLSQ  1342

Query  1082  ARNEEERRACEKLLTPEAKKLLEQEVKKSVKAYLDCVSKARNEREKQECEKLLTPEARKF  1141
             ARNEEERRACEKLLTPEA+KLLEQEVKKSVKAYLDCVS+ARNE+EK+ECEKLLTPEARKF
Sbjct  1343  ARNEEERRACEKLLTPEARKLLEQEVKKSVKAYLDCVSRARNEKEKKECEKLLTPEARKF  1402

Query  1142  LAKQ-------VLSCLEKARNEEERKA---CLKNIPKDLQKNVLAKESLKAYKDCLSQAR  1191
             LAK+       +  CL K  + ++R A   CL  ++ + + + L     KA  DCL  AR
Sbjct  1403  LAKELQQKDKAIKDCL-KNADPNDRAAIMKCLDGLSDEEKLKYLQEAREKAVLDCLKTAR  1461

Query  1192  NEEERRACEKLLTPEARKLLEQEVKKSVKAYLDCVSRARNEKEKQECEKLLTPEARKFLA  1251
              +EE+R C++L +      L QE++          ++  + K++Q     L+   R    
Sbjct  1462  TDEEKRKCQNLYSD-----LIQEIQ----------NKRTQSKQNQ-----LSKTER----  1497

Query  1252  KELQQKDKAIKDCLKN-ADPNDRAAIMKCLDGLSDEEK  1288
               L+Q      +CL N  DP D+ AI +CL+GLSD E+
Sbjct  1498  --LHQ----ASECLDNLDDPTDQQAIEQCLEGLSDSER  1529


 Score =  153 bits (564),  Expect = 7e-38, Method: Compositional matrix adjust.
 Identities = 174/196 (89%), Positives = 178/196 (91%), Gaps = 0/196 (0%)

Query  1    MNEENDKLETSKKTQQHSPQDLSNEEATEANHFedsskeskessdHHLDNPTETKTNFDE  60
            MNEENDKLETSKKTQQHSPQDLSNEEATE NHFEDSSKESKESSD  LDNPTETKTNFD 
Sbjct  1    MNEENDKLETSKKTQQHSPQDLSNEEATEINHFEDSSKESKESSDPYLDNPTETKTNFDG  60

Query  61   YELEETQTQMDsggnetsessngsLADKLFKKARKLVDNKKPFTQQKNLdeeiqepneed  120
               EETQTQMDSGG+ETSESSNGSLADKLFKKARKLVDNK+PFTQQKNLDEE QE NEED
Sbjct  61   DKSEETQTQMDSGGDETSESSNGSLADKLFKKARKLVDNKRPFTQQKNLDEETQELNEED  120

Query  121  dqennGYQEETQMDLIDDETSKKTQQHSPQDLSNEEATEANHFedsskeskessdHHLDN  180
            DQENNGYQEETQ +LIDDETSKKTQQHSPQDLSNEEATE NHFEDSSKESKESSD  LDN
Sbjct  121  DQENNGYQEETQTGLIDDETSKKTQQHSPQDLSNEEATEINHFEDSSKESKESSDPYLDN  180

Query  181  YTEAKTNFDEYESEEI  196
             TE+KTNFD   SEE 
Sbjct  181  PTETKTNFDGDKSEET  196


 Score =  143 bits (525),  Expect = 9e-35, Method: Compositional matrix adjust.
 Identities = 166/188 (89%), Positives = 170/188 (91%), Gaps = 0/188 (0%)

Query  9    ETSKKTQQHSPQDLSNEEATEANHFedsskeskessdHHLDNPTETKTNFDEYELEETQT  68
            ETSKKTQQHSPQDLSNEEATE NHFEDSSKESKESSD  LDNPTETKTNFD    EETQT
Sbjct  139  ETSKKTQQHSPQDLSNEEATEINHFEDSSKESKESSDPYLDNPTETKTNFDGDKSEETQT  198

Query  69   QMDsggnetsessngsLADKLFKKARKLVDNKKPFTQQKNLdeeiqepneeddqennGYQ  128
            QMDSGG+ETSESSNGSLADKLFKKARKLVDNK+PFTQQKNLDEE QE NEEDDQENNGYQ
Sbjct  199  QMDSGGDETSESSNGSLADKLFKKARKLVDNKRPFTQQKNLDEETQELNEEDDQENNGYQ  258

Query  129  EETQMDLIDDETSKKTQQHSPQDLSNEEATEANHFedsskeskessdHHLDNYTEAKTNF  188
            EETQ +LIDDETSKKTQQHSPQDLSNEEATE NHFEDSSKESKESSD  LDN TE+KTNF
Sbjct  259  EETQTGLIDDETSKKTQQHSPQDLSNEEATEINHFEDSSKESKESSDPYLDNPTETKTNF  318

Query  189  DEYESEEI  196
            D   SEE 
Sbjct  319  DGDKSEET  326


 Score = 75.5 bits (267),  Expect = 2e-14, Method: Compositional matrix adjust.
 Identities = 90/289 (32%), Positives = 157/289 (55%), Gaps = 39/289 (13%)

Query  1101  KLLEQEVKKSVKAYLDCVSKARNEREKQECEKLLTPEARKFLAKQVL----SCLEKARNE  1156
             ++ E E K++++A+ +C+S++ N    +EC KL+     +   K+ L     C+ +A+ E
Sbjct  558   NIAEIEDKNPLRAFYECISNGGNY---EECLKLIKDKKLQDQMKKTLEAYNDCIKNAKTE  614

Query  1157  EERKACLKNIPKD-LQKNVLAKESLKAYKDCLSQARNEEERRACEKLLT-PEARKLL--E  1212
             EER  CL  I  + L+K++L ++ ++   DCL +A+ +EER+ C KL+  PE R  +  E
Sbjct  615   EERIKCLDLIKDENLKKSLLNQQKVQVALDCLKNAKTDEERKECLKLINDPEIREKFRKE  674

Query  1213  QEVKKSVKAYLDCVSRARNEKEKQECEKLLTPEARKFLAKELQQKDKAIKDCLKNADPND  1272
              E++K ++ Y DC+  A+ E EK+EC K L+ EA   L      K++A+ DCLKNA  ++
Sbjct  675   LELQKELQEYKDCIKNAKTEAEKNECLKGLSKEAIERL------KQQAL-DCLKNAKTDE  727

Query  1273  RAAIMKCLDGLSDEEKLKYLQEAREKAVLDCLKTARTDEEKRKCQNLYSDLIQEIQNKRA  1332
                   CL  ++++ +   L +   KA  DC+  AR + EK+ C++L   L  E ++K  
Sbjct  728   ERN--ECLKNIPQDLQKELLADMSVKAYKDCVSKARNEKEKQECEKL---LTPEARKKLE  782

Query  1333  QSKQNQLSKTERLHQASECLDNLDDPTDQEAIEQCLEGLSDSERALILG  1381
             Q             Q  +CL N   +  +E   +CL +L+   ++ IL+
Sbjct  783   Q-------------QVLDCLKN---AKTDEERKKCLKDLPKDLQSDILA  815

13) cag7 in NC_020509


> JQ685133|1|G1|442739051|AGC69785.1|Helicobacter_pylori_J166_isolate_31063-2.8/rOut1|+|1..5853|cagY|-|cag 
pathogenicity island 
protein Y
Length=1950

 Score = 1196 bits (4538),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 1093/1387 (79%), Positives = 1173/1387 (85%), Gaps = 109/1387 (7%)

Query  601   ECLKNIPQD-LQKELLADMSVKAYKDCVSKARNekekkecekLLTPEAKKK--LEQQ---  654
             ECLK I +  LQ ++    ++ AY+DC+ +A+ E E+  C  L+  E  KK  L+QQ   
Sbjct  583   ECLKLIKDKKLQDQM--KKTLEAYNDCIKNAKTEEERIKCLDLIKDENLKKSLLNQQKVQ  640

Query  655   -VLDCLKNAKTDEERKKCLK-----DLPKDLQSDILAKESLKAYKDCVSQAKTEDEKKEC  708
               LDCLKNAKTDEERK CLK     ++   ++ ++  +  L+ YKDC+ +AKTE EK+EC
Sbjct  641   VALDCLKNAKTDEERKECLKLINDPEIREKFRKELELQKELQEYKDCIKNAKTEAEKNEC  700

Query  709   eklltpeakklleeeakeSVKAYLDCVSQakteaekkeceklltpeakkkleeakksvka  768
              K L+ EA   L ++A       LDC+ +AKT+ E++EC K +  + +K L         
Sbjct  701   LKGLSKEAIERLKQQA-------LDCLKNAKTDEERNECLKNIPQDLQKELLADMSVKA-  752

Query  769   YLDCVSQakteaekkeceklltPEAKKLLERQALDCLKNAKTDEERKKCLKDLPKDLQKK  828
             Y DCVS+A+ E EK+ECEKLLTPEA+K LE+Q LDCLKNAKTDEERKKCLKDLPKDLQ  
Sbjct  753   YKDCVSKARNEKEKQECEKLLTPEARKKLEQQVLDCLKNAKTDEERKKCLKDLPKDLQSD  812

Query  829   VLAKESVKA---------------------------------------YLDCVSQaktea  849
             +LAKESVKA                                       YLDCVSQAKTEA
Sbjct  813   ILAKESVKAYKDCVSQAKNEAEKKECEKLLTPEAKKLLEEEAKESVKAYLDCVSQAKTEA  872

Query  850   ekkeceklltpeakklleeakeslkaYKDCLSQARNEEERRACEKLLTPEAKKLLEQEVK  909
             EKKECEKLLTPEA+K LEEAK S+KAY DC+SQA+NE+E++ CEKLLTPEA+KLLEQ+  
Sbjct  873   EKKECEKLLTPEARKKLEEAKKSVKAYLDCVSQAKNEDEKKECEKLLTPEARKLLEQQA-  931

Query  910   KSVKAYLDCISKARNEREKQECeklltpeakklleeakeslkaYKDCVSRARNekekkec  969
                   LDC+ +A+ + E++ C K L  + +K +         Y DCVS+A+ E EKKEC
Sbjct  932   ------LDCLKNAKTDEERKKCLKDLPKDLQKKVLAKESVKA-YLDCVSQAKTEAEKKEC  984

Query  970   eklltpeakklleeeakeSVKAYLDCVSQakteaekkeceklltpeakkl-leeakksvk  1028
             EKLLTPEA+KLLEE    S+KAY DCVS+A+ E EKKECEKLLTPEAKKL  EEAK SVK
Sbjct  985   EKLLTPEARKLLEEAKE-SIKAYKDCVSKARNEKEKKECEKLLTPEAKKLLEEEAKESVK  1043

Query  1029  aYLDCVSQakteaekkeceklltpeakklleeakksvkaYLDCVSQakteaekkecekll  1088
             AYLDCVSQAKTEAEKKECEKLLTPEAKK LEEAKKSVKAYLDCVSQAK E EKKECEKLL
Sbjct  1044  AYLDCVSQAKTEAEKKECEKLLTPEAKKKLEEAKKSVKAYLDCVSQAKNEDEKKECEKLL  1103

Query  1089  tPEAKKLLEQQALDCLKNAKTEAEKKRCVKDIPKDLQKKVLAKESVKA------------  1136
             TPEAKKLLEQQALDCLKNAKTEA+KKRCVKD+PKDLQKKVLAKESVKA            
Sbjct  1104  TPEAKKLLEQQALDCLKNAKTEADKKRCVKDLPKDLQKKVLAKESVKAYKDCVSRARNEK  1163

Query  1137  --------------------------YLDCVSRARNekekkeceklltpeakklleeake  1170
                                       YLDCVS+A+ E EKKECEKLLTPEAKKLLEEAKE
Sbjct  1164  EKKECEKLLTPEAKKLLEEAKKSVKAYLDCVSQAKTEAEKKECEKLLTPEAKKLLEEAKE  1223

Query  1171  slkaYKDCLSQARNEEERRACEKLLTPEAKKLLEQEVKKSVKAYLDCVSKARNEREKQEC  1230
             SLKAYKDCLSQARNEEERRACEKLLTPEA+KLLEQEVKKSVKAYLDCVS+A+ E EK+EC
Sbjct  1224  SLKAYKDCLSQARNEEERRACEKLLTPEARKLLEQEVKKSVKAYLDCVSQAKTEAEKKEC  1283

Query  1231  EKLLTPEARKFLAKQVLSCLEKARNEEERKACLKNIPKDLQKNVLAKESLKAYKDCLSQA  1290
             EKLLTPEARKFLAKQVL+CLEKA NEEERKACLKN+PKDLQ NVLAKESLKAYKDCLSQA
Sbjct  1284  EKLLTPEARKFLAKQVLNCLEKAGNEEERKACLKNLPKDLQENVLAKESLKAYKDCLSQA  1343

Query  1291  RNEEERRACEKLLTPEARKLLEQEVKKSVKAYLDCVSKARNEKEKQECEKLLTPEARKFL  1350
             RNEEERRACEKLLTPEARKLLEQEVKKSVKAYLDCVS+ARNEKEK+ECEKLLTPEARKFL
Sbjct  1344  RNEEERRACEKLLTPEARKLLEQEVKKSVKAYLDCVSRARNEKEKKECEKLLTPEARKFL  1403

Query  1351  AKELQQKDKAIKDCLKNADPNDRAAIMKCLDGLSDEEKLKYLQEAREKAVLDCLKTARTD  1410
             AKELQQKDKAIKDCLKNADPNDRAAIMKCLDGLSDEEKLKYLQEAREKAVLDCLKTARTD
Sbjct  1404  AKELQQKDKAIKDCLKNADPNDRAAIMKCLDGLSDEEKLKYLQEAREKAVLDCLKTARTD  1463

Query  1411  EEKRKCQNLYSDLIQEIQNKRTQSKQNQLSKTERLHQASECLDNLDDPTDQEAIEQCLEG  1470
             EEKRKCQNLYSDLIQEIQNKRTQSKQNQLSKTERLHQASECLDNLDDPTDQ+AIEQCLEG
Sbjct  1464  EEKRKCQNLYSDLIQEIQNKRTQSKQNQLSKTERLHQASECLDNLDDPTDQQAIEQCLEG  1523

Query  1471  LSDSERALILGIKRQADEVDLIYSDLRNRKTFDNMAAKGYPLLPMDFKNGGDIATINATN  1530
             LSDSERALILGIKRQADEVD IYSDLRNRKTFDNMAAKGYPLLPMDFKNGGDIATINATN
Sbjct  1524  LSDSERALILGIKRQADEVDRIYSDLRNRKTFDNMAAKGYPLLPMDFKNGGDIATINATN  1583

Query  1531  VDADKIASDNPIYASIEPDITKQYETEKTIKDKNLEAKLANALGGNkkdddkekskksta  1590
             VDADKIASDNPIYASIEPDITKQYETEKTIKDKNLEAKLA+ALGGNKKDDDKEKSKKSTA
Sbjct  1584  VDADKIASDNPIYASIEPDITKQYETEKTIKDKNLEAKLAKALGGNKKDDDKEKSKKSTA  1643

Query  1591  eakvesNKIDKDVAETAKNISEIALKNKKEKSGEFVDENGNPIddkkktekqdetSPVKQ  1650
             EAKVESNKIDKDVAETAKNISEIALKNKKEK+GEFVDENGNPIDDKKK+EKQDETSPVKQ
Sbjct  1644  EAKVESNKIDKDVAETAKNISEIALKNKKEKNGEFVDENGNPIDDKKKAEKQDETSPVKQ  1703

Query  1651  AFIGKSDPTFVLAQYTPIEITLTSKVDATLTGIVSGVVAKDVWNMNGTMILLDKGTKVYG  1710
             AFIGKSDPTFVLAQYTPIEITLTSKVDATLTGIVSGVVAKDVWNMNGTMILLDKGTKVYG
Sbjct  1704  AFIGKSDPTFVLAQYTPIEITLTSKVDATLTGIVSGVVAKDVWNMNGTMILLDKGTKVYG  1763

Query  1711  NYQSVKGGTPIMTRLMIVFTKAITPDGVIIPLANAQAAGMLGEAGVDGYVNNHFMKRIGF  1770
             NYQSVKGGTPIMTRLMIVFTKAITPDGVIIPLANAQAAGMLGEAGVDGYVNNHFMKRIGF
Sbjct  1764  NYQSVKGGTPIMTRLMIVFTKAITPDGVIIPLANAQAAGMLGEAGVDGYVNNHFMKRIGF  1823

Query  1771  AVIASVVNSFLQTAPIIALDKLIGLGKGRSERTPEFNYALGQAINGSMQSSAQMSNQILG  1830
             AVIASVVNSFLQTAPIIALDKLIGLGKGRSERTPEFNYALGQAINGSMQSSAQMSNQILG
Sbjct  1824  AVIASVVNSFLQTAPIIALDKLIGLGKGRSERTPEFNYALGQAINGSMQSSAQMSNQILG  1883

Query  1831  QLMNIPPSFYKNEGDSIKILTMDDIDFSGVYDVKITNKSVVDEIIKQSTKTLSREHEEIT  1890
             QLMNIPPSFYKNEGDSIKILTMDDIDFSGVYDVKITNKSVVDEIIKQSTKTLSREHEEIT
Sbjct  1884  QLMNIPPSFYKNEGDSIKILTMDDIDFSGVYDVKITNKSVVDEIIKQSTKTLSREHEEIT  1943

Query  1891  TSPKGGN  1897
             TSPKGGN
Sbjct  1944  TSPKGGN  1950


 Score =  873 bits (3307),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 884/954 (93%), Positives = 916/954 (97%), Gaps = 0/954 (0%)

Query  9     ETSKKTQQHSPQDLSNEETTEANRFedsskeskessdHHLDNPTETKTNFDEYKSEETQT  68
             ETSKKTQQHSPQDLSNEE+TE N+FEDSSKESKESSD  LDNPTETKTNFD  KSEETQT
Sbjct  139   ETSKKTQQHSPQDLSNEEATEINHFEDSSKESKESSDPYLDNPTETKTNFDGDKSEETQT  198

Query  69    QMDsegnetsessngsLADKLFKKARKLVDNKRPFTQQKnldeeiqepneednqennGYQ  128
             QMDS G+ETSESSNGSLADKLFKKARKLVDNKRPFTQQKNLDEE QE NEED+QENNGYQ
Sbjct  199   QMDSGGDETSESSNGSLADKLFKKARKLVDNKRPFTQQKNLDEETQELNEEDDQENNGYQ  258

Query  129   EETQMDLIDDETSKKTQQHSPQDLSNEETTKANRFedsskeskessdHHLDNPTETKTNF  188
             EETQ +LIDDETSKKTQQHSPQDLSNEE+T  N+FEDSSKESKESSD  LDNPTETKTNF
Sbjct  259   EETQTGLIDDETSKKTQQHSPQDLSNEEATEINHFEDSSKESKESSDPYLDNPTETKTNF  318

Query  189   DEYESEETQTQMDsggnetsessngsLADKLFKKARKLVDNKRPFTQQKNLdeeiqepne  248
             D   SEETQTQMDSGG+ETSESSNGSLADKLFKKARKLVDNKRPFTQQKNLDEE QE NE
Sbjct  319   DGDKSEETQTQMDSGGDETSESSNGSLADKLFKKARKLVDNKRPFTQQKNLDEETQELNE  378

Query  249   eddqennGYQEETQMDLIDDETSKKTQQHSPQDLSNEEATEANRFedsskeskessdHHL  308
             EDDQENNGYQEETQ +LIDDETSKKTQQHSPQDLSNEEATE N+FEDSSKESKESSD  L
Sbjct  379   EDDQENNGYQEETQTGLIDDETSKKTQQHSPQDLSNEEATEINHFEDSSKESKESSDPYL  438

Query  309   DNPTETKTNFDEYESEEITNDSNDQEiikgskkkyiiggivvavliviilFSRSIFHYFM  368
             DNPTETKTNFDE  SEEITNDSNDQEIIKGSKKKYIIGGIVVAVLIVIILFSRSIFHYFM
Sbjct  439   DNPTETKTNFDEDKSEEITNDSNDQEIIKGSKKKYIIGGIVVAVLIVIILFSRSIFHYFM  498

Query  369   PLEDKSSRFSKDRNLYVNDEIQIRQEYNRLLKERNEKGNMIDKNLFFNDDPNRTLYNYLN  428
             PLEDKSSRFSKDRNLYVNDEIQIRQEYNRLLKERNEKGNMIDKNLFFNDDPNRTLYNYLN
Sbjct  499   PLEDKSSRFSKDRNLYVNDEIQIRQEYNRLLKERNEKGNMIDKNLFFNDDPNRTLYNYLN  558

Query  429   IAEIEDKNPLRAFYECISNGGNYEEClklikdkklqdqmkktlEAYNDCIKNAKTEEERI  488
             IAEIEDKNPLRAFYECISNGGNYEECLKLIKDKKLQDQMKKTLEAYNDCIKNAKTEEERI
Sbjct  559   IAEIEDKNPLRAFYECISNGGNYEECLKLIKDKKLQDQMKKTLEAYNDCIKNAKTEEERI  618

Query  489   KCLDLIKDENLKKSLLNQQKVQVALDCLKNAKTDEERNECLKLINDPEIREKFRKELGLQ  548
             KCLDLIKDENLKKSLLNQQKVQVALDCLKNAKTDEER+ECLKLINDPEIREKFRKEL LQ
Sbjct  619   KCLDLIKDENLKKSLLNQQKVQVALDCLKNAKTDEERKECLKLINDPEIREKFRKELELQ  678

Query  549   KELQEYKDCIKNAKTEAEKNECLKGLSKEAIERLKQQALDCLKNAKTDEERKECLKNIPQ  608
             KELQEYKDCIKNAKTEAEKNECLKGLSKEAIERLKQQALDCLKNAKTDEER+ECLKNIPQ
Sbjct  679   KELQEYKDCIKNAKTEAEKNECLKGLSKEAIERLKQQALDCLKNAKTDEERNECLKNIPQ  738

Query  609   DLQKELLADMSVKAYKDCVSKARNekekkecekLLTPEAKKKLEQQVLDCLKNAKTDEER  668
             DLQKELLADMSVKAYKDCVSKARNEKEK+ECEKLLTPEA+KKLEQQVLDCLKNAKTDEER
Sbjct  739   DLQKELLADMSVKAYKDCVSKARNEKEKQECEKLLTPEARKKLEQQVLDCLKNAKTDEER  798

Query  669   KKCLKDLPKDLQSDILAKESLKAYKDCVSQAKTEDEKKECeklltpeakklleeeakeSV  728
             KKCLKDLPKDLQSDILAKES+KAYKDCVSQAK E EKKECEKLLTPEAKKLLEEEAKESV
Sbjct  799   KKCLKDLPKDLQSDILAKESVKAYKDCVSQAKNEAEKKECEKLLTPEAKKLLEEEAKESV  858

Query  729   KAYLDCVSQakteaekkeceklltpeakkkleeakksvkaYLDCVSQakteaekkecekl  788
             KAYLDCVSQAKTEAEKKECEKLLTPEA+KKLEEAKKSVKAYLDCVSQAK E EKKECEKL
Sbjct  859   KAYLDCVSQAKTEAEKKECEKLLTPEARKKLEEAKKSVKAYLDCVSQAKNEDEKKECEKL  918

Query  789   ltPEAKKLLERQALDCLKNAKTDEERKKCLKDLPKDLQKKVLAKESVKAYLDCVSQakte  848
             LTPEA+KLLE+QALDCLKNAKTDEERKKCLKDLPKDLQKKVLAKESVKAYLDCVSQAKTE
Sbjct  919   LTPEARKLLEQQALDCLKNAKTDEERKKCLKDLPKDLQKKVLAKESVKAYLDCVSQAKTE  978

Query  849   aekkeceklltpeakklleeakeslkaYKDCLSQARNEEERRACEKLLTPEAKKLLEQEV  908
             AEKKECEKLLTPEA+KLLEEAKES+KAYKDC+S+ARNE E++ CEKLLTPEAKKLLE+E 
Sbjct  979   AEKKECEKLLTPEARKLLEEAKESIKAYKDCVSKARNEKEKKECEKLLTPEAKKLLEEEA  1038

Query  909   KKSVKAYLDCISKARNEREKQECeklltpeakklleeakeslkaYKDCVSRARN  962
             K SVKAYLDC+S+A+ E EK+ECEKLLTPEAKK LEEAK S+KAY DCVS+A+N
Sbjct  1039  KESVKAYLDCVSQAKTEAEKKECEKLLTPEAKKKLEEAKKSVKAYLDCVSQAKN  1092


 Score =  251 bits (936),  Expect = 3e-67, Method: Compositional matrix adjust.
 Identities = 289/326 (89%), Positives = 300/326 (93%), Gaps = 0/326 (0%)

Query  1    MNEENDKFETSKKTQQHSPQDLSNEETTEANRFedsskeskessdHHLDNPTETKTNFDE  60
            MNEENDK+ETSKKTQQHSPQDLSNEE+TE N+FEDSSKESKESSD  LDNPTETKTNFD 
Sbjct  1    MNEENDKLETSKKTQQHSPQDLSNEEATEINHFEDSSKESKESSDPYLDNPTETKTNFDG  60

Query  61   YKSEETQTQMDsegnetsessngsLADKLFKKARKLVDNKRPFTQQKnldeeiqepneed  120
             KSEETQTQMDS G+ETSESSNGSLADKLFKKARKLVDNKRPFTQQKNLDEE QE NEED
Sbjct  61   DKSEETQTQMDSGGDETSESSNGSLADKLFKKARKLVDNKRPFTQQKNLDEETQELNEED  120

Query  121  nqennGYQEETQMDLIDDETSKKTQQHSPQDLSNEETTKANRFedsskeskessdHHLDN  180
            +QENNGYQEETQ +LIDDETSKKTQQHSPQDLSNEE+T  N+FEDSSKESKESSD  LDN
Sbjct  121  DQENNGYQEETQTGLIDDETSKKTQQHSPQDLSNEEATEINHFEDSSKESKESSDPYLDN  180

Query  181  PTETKTNFDEYESEETQTQMDsggnetsessngsLADKLFKKARKLVDNKRPFTQQKNLd  240
            PTETKTNFD   SEETQTQMDSGG+ETSESSNGSLADKLFKKARKLVDNKRPFTQQKNLD
Sbjct  181  PTETKTNFDGDKSEETQTQMDSGGDETSESSNGSLADKLFKKARKLVDNKRPFTQQKNLD  240

Query  241  eeiqepneeddqennGYQEETQMDLIDDETSKKTQQHSPQDLSNEEATEANRFedsskes  300
            EE QE NEEDDQENNGYQEETQ +LIDDETSKKTQQHSPQDLSNEEATE N+FEDSSKES
Sbjct  241  EETQELNEEDDQENNGYQEETQTGLIDDETSKKTQQHSPQDLSNEEATEINHFEDSSKES  300

Query  301  kessdHHLDNPTETKTNFDEYESEEI  326
            KESSD  LDNPTETKTNFD   SEE 
Sbjct  301  KESSDPYLDNPTETKTNFDGDKSEET  326


 Score =  217 bits (808),  Expect = 4e-57, Method: Compositional matrix adjust.
 Identities = 274/498 (56%), Positives = 332/498 (67%), Gaps = 95/498 (19%)

Query  476   DCIKNAKTEEERIKCL-DLIKDENLKKSLLNQQKVQVALDCLKNAKTDEERNECLKLIND  534
             DC+KNAKT+EER KCL DL KD  L+K +L ++ V+  LDC+ +AKT+ E++EC KL+  
Sbjct  933   DCLKNAKTDEERKKCLKDLPKD--LQKKVLAKESVKAYLDCVSQAKTEAEKKECEKLLT-  989

Query  535   PEIREKFRKELGLQKE-LQEYKDCIKNAKTEAEKNECLKGLSKEAIERLKQQA-------  586
             PE R    K L   KE ++ YKDC+ +A+ E EK+EC K L+ EA   L ++A       
Sbjct  990   PEAR----KLLEEAKESIKAYKDCVSKARNEKEKKECEKLLTPEAKKLLEEEAKESVKAY  1045

Query  587   LDCLKNAKTDEERKECLKNI-PQDLQKELLADMSVKAYKDCVSKARNekekkecekLLTP  645
             LDC+ +AKT+ E+KEC K + P+  +K   A  SVKAY DCVS+A+NE EKKECEKLLTP
Sbjct  1046  LDCVSQAKTEAEKKECEKLLTPEAKKKLEEAKKSVKAYLDCVSQAKNEDEKKECEKLLTP  1105

Query  646   EAKKKLEQQVLDCLKNAKTDEERKKCLKDLPKDLQSDILAKESLKAYKDCVSQAKTEDEK  705
             EAKK LEQQ LDCLKNAKT+ ++K+C+KDLPKDLQ  +LAKES+KAYKDCVS+A+ E EK
Sbjct  1106  EAKKLLEQQALDCLKNAKTEADKKRCVKDLPKDLQKKVLAKESVKAYKDCVSRARNEKEK  1165

Query  706   KECeklltpeakklleeeakeSVKAYLDCVSQakteaekkeceklltpeakkkleeakks  765
             KE    L     K L EEAK SVKAYLDCVSQAKTEAEKKECEKLLTPEAKK LEEAK S
Sbjct  1166  KE-CEKLLTPEAKKLLEEAKKSVKAYLDCVSQAKTEAEKKECEKLLTPEAKKLLEEAKES  1224

Query  766   vkaYLDCVSQakteaekkeceklltPEAKKLLERQ-------------------------  800
             +KAY DC+SQA+ E E++ CEKLLTPEA+KLLE++                         
Sbjct  1225  LKAYKDCLSQARNEEERRACEKLLTPEARKLLEQEVKKSVKAYLDCVSQAKTEAEKKECE  1284

Query  801   --------------ALDCLKNAKTDEERKKCLKDLPKDLQKKVLAKESVKAYLDCVSQak  846
                            L+CL +A  +EERK CLK+LPKDLQ +VLAKES+KAY DC+S   
Sbjct  1285  KLLTPEARKFLAKQVLNCLEKAGNEEERKACLKNLPKDLQENVLAKESLKAYKDCLS---  1341

Query  847   teaekkeceklltpeakklleeakeslkaYKDCLSQARNEEERRACEKLLTPEAKKLLEQ  906
                                                QARNEEERRACEKLLTPEA+KLLEQ
Sbjct  1342  -----------------------------------QARNEEERRACEKLLTPEARKLLEQ  1366

Query  907   EVKKSVKAYLDCISKARN  924
             EVKKSVKAYLDC+S+ARN
Sbjct  1367  EVKKSVKAYLDCVSRARN  1384


 Score =  110 bits (401),  Expect = 6e-25, Method: Compositional matrix adjust.
 Identities = 116/286 (41%), Positives = 162/286 (57%), Gaps = 55/286 (19%)

Query  473   AYNDCIKNAKTEEERIKCLDLIKDENLKKSLLNQQKVQVAL--DCLKNAKTDEERNECLK  530
             AY DC+ +AKTE E+  C  L+  E   K LL++ K  +    DCL +A+ +EER  C K
Sbjct  1189  AYLDCVSQAKTEAEKKECEKLLTPEA--KKLLEEAKESLKAYKDCLSQARNEEERRACEK  1246

Query  531   LINDPEIREKFRKELGLQKELQEYKDCIKNAKTEAEKNECLKGLSKEAIERLKQQALDCL  590
             L+  PE R  + +E+  +K ++ Y DC+ +AKTEAEK+EC K L+ EA   L +Q L+CL
Sbjct  1247  LLT-PEARKLLEQEV--KKSVKAYLDCVSQAKTEAEKKECEKLLTPEARKFLAKQVLNCL  1303

Query  591   KNAKTDEERKECLKNIPQDLQKELLADMSVKAYKDC------------------------  626
              +A  +EERK CLKN+P+DLQ ++LA  S+KAYKDC                        
Sbjct  1304  EKAGNEEERKACLKNLPKDLQENVLAKESLKAYKDCLSQARNEEERRACEKLLTPEARKL  1363

Query  627   ---------------VSKARNekekkecekLLTPEAKKKL-------EQQVLDCLKNAKT  664
                            VS+ARNEKEKKECEKLLTPEA+K L       ++ + DCLKNA  
Sbjct  1364  LEQEVKKSVKAYLDCVSRARNEKEKKECEKLLTPEARKFLAKELQQKDKAIKDCLKNADP  1423

Query  665   DE--ERKKCLKDLPKDLQSDILAKESLKAYKDCVSQAKTEDEKKEC  708
             ++     KCL +L+ + +   L     KA  DC+  A+T++EK+ C
Sbjct  1424  NDRAAIMKCLDGLSDEEKLKYLQEAREKAVLDCLKTARTDEEKRKC  1469


 Score =  110 bits (400),  Expect = 8e-25, Method: Compositional matrix adjust.
 Identities = 103/286 (37%), Positives = 154/286 (54%), Gaps = 56/286 (19%)

Query  1177  DCLSQARNEEERRACEKLLTPEAKKLLEQEVKKSVKAYLDCVSKARNEREKQECEKLLTP  1236
             +C+S++ N EE   C KL+     K L++++KK++ AY DC+ +A+ E E+  C  L+  
Sbjct  573   ECISNGGNYEE---CLKLIK---DKKLQDQMKKTLEAYNDCIKNAKTEEERIKCLDLIKD  626

Query  1237  EA--RKFLAKQ----VLSCLEKARNEEERKACLK-----NIPKDLQKNVLAKESLKAYKD  1285
             E   + +L +Q     L CL +A+ +EERK CLK     +I   ++K++  +  L+ YKD
Sbjct  627   ENLKKSLLNQQKVQVALDCLKNAKTDEERKECLKLINDPEIREKFRKELELQKELQEYKD  686

Query  1286  CLSQARNEEERRACEKLLTPEARKLLEQE------------------------------V  1315
             C+ +A+ E E+  C K L+ EA   L Q+                               
Sbjct  687   CIKNAKTEAEKNECLKGLSKEAIERLKQQALDCLKNAKTDEERNECLKNIPQDLQKELLA  746

Query  1316  KKSVKAYLDCVSKARNEKEKQECEKLLTPEARKFLAKELQQKDKAIKDCLKNADPNDRAA  1375
               SVKAY DCVSKARNEKEKQECEKLLTPEARK L       ++ + DCLKNA  ++   
Sbjct  747   DMSVKAYKDCVSKARNEKEKQECEKLLTPEARKKL-------EQQVLDCLKNAKTDE--E  797

Query  1376  IMKCLDGLSDEEKLKYLQEAREKAVLDCLKTARTDEEKRKCQNLYS  1421
               KCL +L+ + +   L     KA  DC+  A+ + EK+ C++L +
Sbjct  798   RKKCLKDLPKDLQSDILAKESVKAYKDCVSQAKNEAEKKECEKLLT  843


 Score = 77.1 bits (273),  Expect = 8e-15, Method: Compositional matrix adjust.
 Identities = 90/289 (32%), Positives = 158/289 (55%), Gaps = 39/289 (13%)

Query  1201  KLLEQEVKKSVKAYLDCVSKARNEREKQECEKLLTPEARKFLAKQVL----SCLEKARNE  1256
             ++ E E K++++A+ +C+S++ N    +EC KL+     +   K+ L     C+ +A+ E
Sbjct  558   NIAEIEDKNPLRAFYECISNGGNY---EECLKLIKDKKLQDQMKKTLEAYNDCIKNAKTE  614

Query  1257  EERKACLKNIPKD-LQKNVLAKESLKAYKDCLSQARNEEERRACEKLLT-PEARKLL--E  1312
             EER  CL  I  + L+K++L ++ ++   DCL +A+ +EER+ C KL+  PE R  +  E
Sbjct  615   EERIKCLDLIKDENLKKSLLNQQKVQVALDCLKNAKTDEERKECLKLINDPEIREKFRKE  674

Query  1313  QEVKKSVKAYLDCVSKARNEKEKQECEKLLTPEARKFLAKELQQKDKAIKDCLKNADPND  1372
              E++K ++ Y DC+ +A+ E EK+EC K L+ EA   L      K++A+ DCLKNA  ++
Sbjct  675   LELQKELQEYKDCIKNAKTEAEKNECLKGLSKEAIERL------KQQAL-DCLKNAKTDE  727

Query  1373  RAAIMKCLDGLSDEEKLKYLQEAREKAVLDCLKTARTDEEKRKCQNLYSDLIQEIQNKRT  1432
                   CL  ++++ +   L +   KA  DC+  AR + EK+ C++L   L  E ++K  
Sbjct  728   ERN--ECLKNIPQDLQKELLADMSVKAYKDCVSKARNEKEKQECEKL---LTPEARKKLE  782

Query  1433  QSKQNQLSKTERLHQASECLDNLDDPTDQEAIEQCLEGLSDSERALILG  1481
             Q             Q  +CL N   +  +E   +CL +L+   ++ IL+
Sbjct  783   Q-------------QVLDCLKN---AKTDEERKKCLKDLPKDLQSDILA  815


 Score = 45.3 bits (152),  Expect = 3e-05, Method: Compositional matrix adjust.
 Identities = 40/115 (35%), Positives = 70/115 (61%), Gaps = 14/115 (12%)

Query  473   AYNDCIKNAKTEE--ERIKCLD-LIKDENLKKSLLNQQKVQVALDCLKNAKTDEERNECL  529
             A +DC+KNA  ++    +KCLD L  +E+LK   L++ + +  LDCLK A+TDEE+  C 
Sbjct  1413  AIKDCLKNADPNDRAAIMKCLDGLSDEEKLK--YLQEAREKAVLDCLKTARTDEEKRKCQ  1470

Query  530   KLIND--PEIREKF----RKELGLQKELQEYKDCIKNAKTEAEK---NECLKGLS  575
             +L +D   EI++K     +++L+    L++  +C+ N    +++   ++CL GLS
Sbjct  1471  NLYSDLIQEIQNKRTQSKQNQLSKTERLHQASECLDNLDDPTDQQAIEQCLEGLS  1525

14) HPELS_03975 in NC_017063


> JQ685133|1|G1|442739051|AGC69785.1|Helicobacter_pylori_J166_isolate_31063-2.8/rOut1|+|1..5853|cagY|-|cag 
pathogenicity island 
protein Y
Length=1950

 Score = 1164 bits (4416),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 1109/1400 (80%), Positives = 1212/1400 (87%), Gaps = 70/1400 (5%)

Query  9     ETSKKAQQDSPQDLSNEEATEANHFEDPLKEESSDNH--LDNSTETKTQETKTHFDEDKL  66
             ETSKK+QQ+SPQDLSNEEATE NHFED+ KE    ++  LDN+TETKT     +FD DK 
Sbjct  139   ETSKKTQQHSPQDLSNEEATEINHFEDSSKESKESSDPYLDNPTETKT-----NFDGDKS  193

Query  67    EETQTQMDsggnetsessngsLADKLFKKARKLVDDKRPFTQQKSLDEEAQKLNKEDDQE  126
             EETQTQMDSGG+ETSESSNGSLADKLFKKARKLVD+KRPFTQQK+LDEE+Q LN EDDQE
Sbjct  194   EETQTQMDSGGDETSESSNGSLADKLFKKARKLVDNKRPFTQQKNLDEETQELNEEDDQE  253

Query  127   NNGYQEETQTDLIDDETSKKAQQDSPQDLSNEEATEANHFEDLLKESKESSDNHLDNPTE  186
             NNGYQEETQT+LIDDETSKK+QQ+SPQDLSNEEATE NHFED  KESKESSD  LDNPTE
Sbjct  254   NNGYQEETQTGLIDDETSKKTQQHSPQDLSNEEATEINHFEDSSKESKESSDPYLDNPTE  313

Query  187   TKTHFDKDKLEETQTQIDsggnetsessngsLADKLFKKARKLVDDKRPFTQQKSLDEEA  246
             TKT+FD DK EETQTQ+DSGG+ETSESSNGSLADKLFKKARKLVD+KRPFTQQK+LDEE+
Sbjct  314   TKTNFDGDKSEETQTQMDSGGDETSESSNGSLADKLFKKARKLVDNKRPFTQQKNLDEET  373

Query  247   QKLNKEDDQENNGYQEETQTDLIDDETSKKTQQHSPQDLSNEEATEVNHFEDSLKEESSD  306
             Q LN EDDQENNGYQEETQT+LIDDETSKKTQQHSPQDLSNEEATE+NHFEDS KE    
Sbjct  374   QELNEEDDQENNGYQEETQTGLIDDETSKKTQQHSPQDLSNEEATEINHFEDSSKESKES  433

Query  307   NH--LDNPTETKTNFDGDKSEEITNDSNDQEiikgskkkyiiggivvavliviilFSRSI  364
             ++  LDNPTETKTNFD DKSEEITNDSNDQEIIKGSKKKYIIGGIVVAVLIVIILFSRSI
Sbjct  434   SDPYLDNPTETKTNFDEDKSEEITNDSNDQEIIKGSKKKYIIGGIVVAVLIVIILFSRSI  493

Query  365   FHYFVPLEDKSSRFSKDRNLYVNDEIQIRQEYNRLLKERNEKGNMIDKNLFFNDDPNRTL  424
             FHYF+PLEDKSSRFSKDRNLYVNDEIQIRQEYNRLLKERNEKGNMIDKNLFFNDDPNRTL
Sbjct  494   FHYFMPLEDKSSRFSKDRNLYVNDEIQIRQEYNRLLKERNEKGNMIDKNLFFNDDPNRTL  553

Query  425   YNYLNIAEIEDKNPLRAFYECISNGGNYEEClklikdkklqdqmkktlEAYNDCIKNAKT  484
             YNYLNIAEIEDKNPLRAFYECISNGGNYEECLKLIKDKKLQDQMKKTLEAYNDCIKNAKT
Sbjct  554   YNYLNIAEIEDKNPLRAFYECISNGGNYEECLKLIKDKKLQDQMKKTLEAYNDCIKNAKT  613

Query  485   EEERIKCLDLIKDENLKKSLLNQQKVQVALDCLKNAKTDEERKECLKLINDPEIrekfrk  544
             EEERIKCLDLIKDENLKKSLLNQQKVQVALDCLKNAKTDEERKECLKLINDPEIREKFRK
Sbjct  614   EEERIKCLDLIKDENLKKSLLNQQKVQVALDCLKNAKTDEERKECLKLINDPEIREKFRK  673

Query  545   elelqkelqeYKDCIKNAKTEAEKNECLKGLSKEAIERLKQQALDCLKNAKTDEERNECL  604
             ELELQKELQEYKDCIKNAKTEAEKNECLKGLSKEAIERLKQQALDCLKNAKTDEERNECL
Sbjct  674   ELELQKELQEYKDCIKNAKTEAEKNECLKGLSKEAIERLKQQALDCLKNAKTDEERNECL  733

Query  605   KNIPQDLQKELLADMSVKAYKDCVSRARNekekkecekLLTPEARKKLEQQVLDCLKNAK  664
             KNIPQDLQKELLADMSVKAYKDCVS+ARNEKEK+ECEKLLTPEARKKLEQQVLDCLKNAK
Sbjct  734   KNIPQDLQKELLADMSVKAYKDCVSKARNEKEKQECEKLLTPEARKKLEQQVLDCLKNAK  793

Query  665   TDEERKKCLKDLPKDLQSDILAKESVKAYKDCVSQakteaekkeceklltpeakklleee  724
             TDEERKKCLKDLPKDLQSDILAKESVKAYKDCVSQAK EAEKKECEKLLTPEAKKLLEEE
Sbjct  794   TDEERKKCLKDLPKDLQSDILAKESVKAYKDCVSQAKNEAEKKECEKLLTPEAKKLLEEE  853

Query  725   akeSVKAYLDCVSkakneaekkeceklltpeakkkleeakksvkaYLDCVSQAKTEAEKQ  784
             AKESVKAYLDCVS+AK EAEKKECEKLLTPEA+KKLEEAKKSVKAYLDCVSQAK E EK+
Sbjct  854   AKESVKAYLDCVSQAKTEAEKKECEKLLTPEARKKLEEAKKSVKAYLDCVSQAKNEDEKK  913

Query  785   ECEKLLTPEAKKLLEQQALDCLKNAKTEAEKKRCVKDLPKDLQKKVLAKESVRVYLDCVS  844
             ECEKLLTPEA+KLLEQQALDCLKNAKT+ E+K+C+KDLPKDLQKKVLAKESV+ YLDCVS
Sbjct  914   ECEKLLTPEARKLLEQQALDCLKNAKTDEERKKCLKDLPKDLQKKVLAKESVKAYLDCVS  973

Query  845   QAKTEAERKECEKLLTPEARKLLEEAKKSVKAYKDCVSRARNekekkecekLLTPEARKL  904
             QAKTEAE+KECEKLLTPEARKLLEEAK S+KAYKDCVS+ARNEKEKKECEKLLTPEA+KL
Sbjct  974   QAKTEAEKKECEKLLTPEARKLLEEAKESIKAYKDCVSKARNEKEKKECEKLLTPEAKKL  1033

Query  905   L-EEAKKSVKAYLDCVSQakteaekkeceklltPEARKLLEEAKKSVKLFGLRISGKLSG  963
             L EEAK SVKAYLDCVSQAKTEAEKKECEKLLTPEA+K LEEAKKSVK +   +S   + 
Sbjct  1034  LEEEAKESVKAYLDCVSQAKTEAEKKECEKLLTPEAKKKLEEAKKSVKAYLDCVSQAKNE  1093

Query  964   KKRREIDS--RPEARKLLENQALDCLKNAKTEAEKKRCVKDLPKDLQKKVLAKESVRVYL  1021
               ++E +    PEA+KLLE+QALDCLKNAKTEA+KKRCVKDLPKDLQKKVLAKESV+ Y 
Sbjct  1094  DEKKECEKLLTPEAKKLLEQQALDCLKNAKTEADKKRCVKDLPKDLQKKVLAKESVKAYK  1153

Query  1022  DCVSkakteaekkeceklltPEARK-----------------------------------  1046
             DCVS+A+ E EKKECEKLLTPEA+K                                   
Sbjct  1154  DCVSRARNEKEKKECEKLLTPEAKKLLEEAKKSVKAYLDCVSQAKTEAEKKECEKLLTPE  1213

Query  1047  ---LLEEAKESVKAYKDCVSRARNEKEKQECEKLLTPEAKKLLEQEVKKSVKAYLDCVSR  1103
                LLEEAKES+KAYKDC+S+ARNE E++ CEKLLTPEA+KLLEQEVKKSVKAYLDCVS+
Sbjct  1214  AKKLLEEAKESLKAYKDCLSQARNEEERRACEKLLTPEARKLLEQEVKKSVKAYLDCVSQ  1273

Query  1104  ARNekekkecekLLTPEARKFLENQALDCLKNAKTEAEKKRCVKDLPKDLQKKVLAKESV  1163
             A+ E EKKECEKLLTPEARKFL +Q L+CL +A  E E+K C+K+LPKDLQ +VLAKES+
Sbjct  1274  AKTEAEKKECEKLLTPEARKFLAKQVLNCLEKAGNEEERKACLKNLPKDLQENVLAKESL  1333

Query  1164  KAYLDCVSRARNekekke-ceklltpeakklleeakesvkaYLDCVSRARNekekkecek  1222
             KAY DC+S+ARNE E++     L     K L +E K SVKAYLDCVSRARNEKEKKECEK
Sbjct  1334  KAYKDCLSQARNEEERRACEKLLTPEARKLLEQEVKKSVKAYLDCVSRARNEKEKKECEK  1393

Query  1223  LLTPEARKLLE-EAKESLKAYKDCLSQARNETERRA---CEKLLTPEAR-KLLEQEVKKS  1277
             LLTPEARK+L  E ++  KA KDCL +A +  +R A   C   L+ E + K L++   K+
Sbjct  1394  LLTPEARKFLAKELQQKDKAIKDCLKNA-DPNDRAAIMKCLDGLSDEEKLKYLQEAREKA  1452

Query  1278  VKAYLDCVSRARNEKEKQECEKLLTPEARKFLEKELQQKDKAI---------KDCLKN-A  1327
             V   LDC+  AR + EK+ C++L +   + + +K  Q K++ +          +CL N  
Sbjct  1453  V---LDCLKTARTDEEKRKCQNLYSDLIQEIQNKRTQSKQNQLSKTERLHQASECLDNLD  1509

Query  1328  DPNDRAAIMKCLDGLSDEEK  1347
             DP D+ AI +CL+GLSD E+
Sbjct  1510  DPTDQQAIEQCLEGLSDSER  1529


 Score = 1131 bits (4287),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 931/1205 (78%), Positives = 999/1205 (83%), Gaps = 125/1205 (10%)

Query  770   YLDCVSQAKTEAEKQECEKLLTPEAKKLLEQQALDCLKNAKTEAEKKRCVKDLPKDLQKK  829
             Y DCVS+A+ E EKQECEKLLTPEA+K LEQQ LDCLKNAKT+ E+K+C+KDLPKDLQ  
Sbjct  753   YKDCVSKARNEKEKQECEKLLTPEARKKLEQQVLDCLKNAKTDEERKKCLKDLPKDLQSD  812

Query  830   VLAKESVRVYLDCVSQAKTEAERKECEKLLTPEARKLLEE-AKKSVKAYKDCVSRARNek  888
             +LAKESV+ Y DCVSQAK EAE+KECEKLLTPEA+KLLEE AK SVKAY DCVS+A+ E 
Sbjct  813   ILAKESVKAYKDCVSQAKNEAEKKECEKLLTPEAKKLLEEEAKESVKAYLDCVSQAKTEA  872

Query  889   ekkecekLLTPEARKLLEEAKKSVKAYLDCVSQakteaekkeceklltPEARKLLEEAKK  948
             EKKECEKLLTPEARK LEEAKKSVKAYLDCVSQAK E EKKECEKLLTPEARKLLE+   
Sbjct  873   EKKECEKLLTPEARKKLEEAKKSVKAYLDCVSQAKNEDEKKECEKLLTPEARKLLEQQA-  931

Query  949   SVKLFGLRISGKLSGKKRREIDSRPEA--RKLLENQA----LDCLKNAKTEAEKKRCVKD  1002
                L  L+ ++K    +++ +   P    +K+L +++    LDC+ +AKTEAEKK C K 
Sbjct  932   ---LDCLK-NAKTDEERKKCLKDLPKDLQKKVLAKESVKAYLDCVSQAKTEAEKKECEKL  987

Query  1003  LPKDLQKKVL--AKESVRVYLDCVSkakteaekkeceklltPEARKLLEE-AKESVKA--  1057
             L  +  +K+L  AKES++ Y DCVSKA+ E EKKECEKLLTPEA+KLLEE AKESVKA  
Sbjct  988   LTPE-ARKLLEEAKESIKAYKDCVSKARNEKEKKECEKLLTPEAKKLLEEEAKESVKAYL  1046

Query  1058  ------------------------------------YKDCVSRARNEKEKQECEKLLTPE  1081
                                                 Y DCVS+A+NE EK+ECEKLLTPE
Sbjct  1047  DCVSQAKTEAEKKECEKLLTPEAKKKLEEAKKSVKAYLDCVSQAKNEDEKKECEKLLTPE  1106

Query  1082  AKKLLEQEV------------------------------KKSVKAYLDCVSRARNekekk  1111
             AKKLLEQ+                               K SVKAY DCVSRARNEKEKK
Sbjct  1107  AKKLLEQQALDCLKNAKTEADKKRCVKDLPKDLQKKVLAKESVKAYKDCVSRARNEKEKK  1166

Query  1112  ecekLLTPEARKFLENQA------LDCLKNAKTEAEKKRCVKDLPKDLQKKVL--AKESV  1163
             ECEKLLTPEA+K+LE+        LDC+ +AKTEAEKK C K L  +  KK+L  AKES+
Sbjct  1167  ECEKLLTPEAKKLLEEAKKSVKAYLDCVSQAKTEAEKKECEKLLTPE-AKKLLEEAKESL  1225

Query  1164  KAYLDCVSRARNekekke-ceklltpeakklleeakesvkaYLDCVSRARNekekkecek  1222
             KAY DC+S+ARNE E++     L     K L +E K SVKAYLDCVS+A+ E EKKECEK
Sbjct  1226  KAYKDCLSQARNEEERRACEKLLTPEARKLLEQEVKKSVKAYLDCVSQAKTEAEKKECEK  1285

Query  1223  LLTPEARKLLEE-------------------------------AKESLKAYKDCLSQARN  1251
             LLTPEARK+L                                 AKESLKAYKDCLSQARN
Sbjct  1286  LLTPEARKFLAKQVLNCLEKAGNEEERKACLKNLPKDLQENVLAKESLKAYKDCLSQARN  1345

Query  1252  ETERRACEKLLTPEARKLLEQEVKKSVKAYLDCVSRARNEKEKQECEKLLTPEARKFLEK  1311
             E ERRACEKLLTPEARKLLEQEVKKSVKAYLDCVSRARNEKEK+ECEKLLTPEARKFL K
Sbjct  1346  EEERRACEKLLTPEARKLLEQEVKKSVKAYLDCVSRARNEKEKKECEKLLTPEARKFLAK  1405

Query  1312  ELQQKDKAIKDCLKNADPNDRAAIMKCLDGLSDEEKLKYLQEAREKAVLDCLKTARTDEE  1371
             ELQQKDKAIKDCLKNADPNDRAAIMKCLDGLSDEEKLKYLQEAREKAVLDCLKTARTDEE
Sbjct  1406  ELQQKDKAIKDCLKNADPNDRAAIMKCLDGLSDEEKLKYLQEAREKAVLDCLKTARTDEE  1465

Query  1372  KRKCQNLYSDLIQEIqnkkaqnkqnqLSKTERLHQASECLDNLDDPTDQEAIEQCLEGLS  1431
             KRKCQNLYSDLIQEIQNK++Q+KQNQLSKTERLHQASECLDNLDDPTDQ+AIEQCLEGLS
Sbjct  1466  KRKCQNLYSDLIQEIQNKRTQSKQNQLSKTERLHQASECLDNLDDPTDQQAIEQCLEGLS  1525

Query  1432  DSERALILGIKRQADEVDRIYSDLRSRKTFDNMAAKGYPLLPMDFKNGGDIATINATNVD  1491
             DSERALILGIKRQADEVDRIYSDLR+RKTFDNMAAKGYPLLPMDFKNGGDIATINATNVD
Sbjct  1526  DSERALILGIKRQADEVDRIYSDLRNRKTFDNMAAKGYPLLPMDFKNGGDIATINATNVD  1585

Query  1492  ADKIASDNPIYASIEPDITKQYETEKTIkdksleaklakalggdkkdddkekskkPTTET  1551
             ADKIASDNPIYASIEPDITKQYETEKTIKDK+LEAKLAKALGG+KKDDDKEKSKK+T+E+
Sbjct  1586  ADKIASDNPIYASIEPDITKQYETEKTIKDKNLEAKLAKALGGNKKDDDKEKSKKSTAEA  1645

Query  1552  KAESNKIDKDVAETAKNISEIALKNKKEKSGDFVDENGNPIddkkkeekqdeTSPVKQAF  1611
             K ESNKIDKDVAETAKNISEIALKNKKEK+G+FVDENGNPIDDKKK EKQDETSPVKQAF
Sbjct  1646  KVESNKIDKDVAETAKNISEIALKNKKEKNGEFVDENGNPIDDKKKAEKQDETSPVKQAF  1705

Query  1612  IGKSDPTFVLAQYTPIEITLTSKVDATLTGIVSGVVAKDVWNMNGTMILLDKGTKVYGNY  1671
             IGKSDPTFVLAQYTPIEITLTSKVDATLTGIVSGVVAKDVWNMNGTMILLDKGTKVYGNY
Sbjct  1706  IGKSDPTFVLAQYTPIEITLTSKVDATLTGIVSGVVAKDVWNMNGTMILLDKGTKVYGNY  1765

Query  1672  QSVKGGTPIMTRLMIVFTKAITPDGVIIPLANAQAAGMLGEAGVDGYVNNHFMKRIGFAV  1731
             QSVKGGTPIMTRLMIVFTKAITPDGVIIPLANAQAAGMLGEAGVDGYVNNHFMKRIGFAV
Sbjct  1766  QSVKGGTPIMTRLMIVFTKAITPDGVIIPLANAQAAGMLGEAGVDGYVNNHFMKRIGFAV  1825

Query  1732  IASVVNSFLQTAPIIALDKLIGLGKGRSERTPEFNYALGQAINGSMQSSAQMSNQILGQL  1791
             IASVVNSFLQTAPIIALDKLIGLGKGRSERTPEFNYALGQAINGSMQSSAQMSNQILGQL
Sbjct  1826  IASVVNSFLQTAPIIALDKLIGLGKGRSERTPEFNYALGQAINGSMQSSAQMSNQILGQL  1885

Query  1792  MNIPPSFYKNEGDSIKILTMDDIDFSGVYDVKITNKSVVDEIIKQSTKTLSREHEEITTS  1851
             MNIPPSFYKNEGDSIKILTMDDIDFSGVYDVKITNKSVVDEIIKQSTKTLSREHEEITTS
Sbjct  1886  MNIPPSFYKNEGDSIKILTMDDIDFSGVYDVKITNKSVVDEIIKQSTKTLSREHEEITTS  1945

Query  1852  PKGGN  1856
             PKGGN
Sbjct  1946  PKGGN  1950


 Score =  295 bits (1105),  Expect = 1e-80, Method: Compositional matrix adjust.
 Identities = 273/331 (83%), Positives = 297/331 (90%), Gaps = 9/331 (2%)

Query  1    MNEENDKLETSKKAQQDSPQDLSNEEATEANHFEDPLKEESSDNH--LDNSTETKTQETK  58
            MNEENDKLETSKK+QQ+SPQDLSNEEATE NHFED+ KE    ++  LDN+TETKT    
Sbjct  1    MNEENDKLETSKKTQQHSPQDLSNEEATEINHFEDSSKESKESSDPYLDNPTETKT----  56

Query  59   THFDEDKLEETQTQMDsggnetsessngsLADKLFKKARKLVDDKRPFTQQKSLDEEAQK  118
             +FD DK EETQTQMDSGG+ETSESSNGSLADKLFKKARKLVD+KRPFTQQK+LDEE+Q 
Sbjct  57   -NFDGDKSEETQTQMDSGGDETSESSNGSLADKLFKKARKLVDNKRPFTQQKNLDEETQE  115

Query  119  LNKEDDQENNGYQEETQTDLIDDETSKKAQQDSPQDLSNEEATEANHFEDLLKESKESSD  178
            LN EDDQENNGYQEETQT+LIDDETSKK+QQ+SPQDLSNEEATE NHFED  KESKESSD
Sbjct  116  LNEEDDQENNGYQEETQTGLIDDETSKKTQQHSPQDLSNEEATEINHFEDSSKESKESSD  175

Query  179  NHLDNPTETKTHFDKDKLEETQTQIDsggnetsessngsLADKLFKKARKLVDDKRPFTQ  238
              LDNPTETKT+FD DK EETQTQ+DSGG+ETSESSNGSLADKLFKKARKLVD+KRPFTQ
Sbjct  176  PYLDNPTETKTNFDGDKSEETQTQMDSGGDETSESSNGSLADKLFKKARKLVDNKRPFTQ  235

Query  239  QKSLDEEAQKLNKEDDQENNGYQEETQTDLIDDETSKKTQQHSPQDLSNEEATEVNHFED  298
            QK+LDEE+Q LN EDDQENNGYQEETQT+LIDDETSKKTQQHSPQDLSNEEATE+NHFED
Sbjct  236  QKNLDEETQELNEEDDQENNGYQEETQTGLIDDETSKKTQQHSPQDLSNEEATEINHFED  295

Query  299  SLKEESSDNH--LDNPTETKTNFDGDKSEEI  327
            S KE    ++  LDNPTETKTNFDGDKSEE 
Sbjct  296  SSKESKESSDPYLDNPTETKTNFDGDKSEET  326