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Homologs of unnamed gene of EF611304

protein-level

Hit (GenBank Accn)

Product

Source Genome

Eval.

Ident.(%)

1) A458_18460
( YP_006459338.1 )

phage integrase

NC_018028
(Pseudomonas stutzeri CCUG 29243)

3e-129

2) rci
( YP_003898371.1 )

site-specific recombinase, phage integrase family

NC_014532
(Halomonas elongata DSM 2581)

8e-122

3) PSPTO_0535
( NP_790382.1 )

site-specific recombinase, phage integrase family

NC_004578
(Pseudomonas syringae DC3000)

2e-119

4) PSEBR_a5153
( YP_004356610.1 )

phage integrase

NC_015379
(Pseudomonas brassicacearum NFM421)

2e-118

5) NH44784_027851
( YP_008029870.1 )

Shufflon-specific DNA recombinase

NC_021285
(Achromobacter xylosoxidans NH44784-1996)

4e-117

6) XALc_2647
( YP_003377119.1 )

shufflon-specific DNA recombinase

NC_013722
(Xanthomonas albilineans GPE PC73)

6e-117

7) AciX8_4316
( YP_005059619.1 )

integrase family protein

NC_016631
(Granulicella mallensis MP5ACTX8)

1e-115

8) BN117_2912
( YP_006896747.1 )

phage integrase family site specific recombinase

NC_018828
(Bordetella parapertussis Bpp5)

1e-113

9) rci
( YP_693784.1 )

shufflon-specific DNA recombinase

NC_008260
(Alcanivorax borkumensis SK2)

8e-114

10) XOO0599
( YP_199238.1 )

phage integrase family site specific recombinase

NC_006834
(Xanthomonas oryzae KACC10331)

1e-113

11) GBP346_A0729
( YP_002895455.1 )

phage integrase family protein

NC_012695
(Burkholderia pseudomallei MSHR346)

9e-114

12) PT7_2191
( YP_004417355.1 )

site-specific recombinase, phage integrase

NC_015458
(Pusillimonas sp. T7-7)

1e-112

13) Atc_1024
( YP_004748373.1 )

phage integrase

NC_015850
(Acidithiobacillus caldus SM-1)

4e-53

14) LFML04_0664
( YP_006765859.1 )

integrase

NC_018649
(Leptospirillum ferriphilum ML-04)

5e-53

15) Tbd_1808
( YP_315566.1 )

phage integrase site specific recombinase

NC_007404
(Thiobacillus denitrificans ATCC 25259)

1e-50

16) Acife_0402
( YP_004782950.1 )

integrase family protein

NC_015942
(Acidithiobacillus ferrivorans SS3)

1e-49

17) LFML04_0607
( YP_006765803.1 )

integrase

NC_018649
(Leptospirillum ferriphilum ML-04)

2e-48

18) LFML04_1653
( YP_006766815.1 )

phage integrase

NC_018649
(Leptospirillum ferriphilum ML-04)

4e-46

19) YpsIP31758_B0022
( YP_001393320.1 )

shufflon-specific DNA recombinase

NC_009705
(Yersinia pseudotuberculosis IP 31758)

9e-46

20) rci
( YP_006531957.1 )

integrase family protein

NC_018220
(Pseudomonas putida DOT-T1E)

2e-45

21) Bphyt_7273
( YP_001893487.1 )

integrase family protein

NC_010679
(Burkholderia phytofirmans PsJN)

3e-45

22) Tmz1t_2794
( YP_002889771.1 )

integrase

NC_011662
(Thauera sp. MZ1T)

4e-45

23) LFE_0797
( YP_005468642.1 )

phage integrase

NC_017094
(Leptospirillum ferrooxidans C2-3)

9e-44

24) PputW619_3971
( YP_001750820.1 )

integrase family protein

NC_010501
(Pseudomonas putida W619)

2e-42

25) B479_20185
( YP_007230872.1 )

integrase family protein

NC_019905
(Pseudomonas putida PC9)

5e-42

26) Msip34_2844
( YP_003052595.1 )

integrase family protein

NC_012970
(Methylovorus glucosetrophus SIP3-4)

2e-38

27) rci
( NP_458640.1 )

shufflon-specific DNA recombinase

NC_003198
(Salmonella enterica CT18)

1e-36

28) STBHUCCB_45020
( YP_005219922.1 )

hypothetical protein

NC_016832
(Salmonella enterica P-stx-12)

1e-36

29) rci
( NP_807850.1 )

shufflon-specific DNA recombinase

NC_004631
(Salmonella enterica Ty2)

1e-36

30) TY21A_21645
( YP_007928489.1 )

shufflon-specific DNA recombinase

NC_021176
(Salmonella enterica Ty21a)

1e-36

31) Pecwa_0639
( YP_003258070.1 )

integrase

NC_013421
(Pectobacterium wasabiae WPP163)

1e-33

32) SPAB_05367
( YP_001591473.1 )

hypothetical protein

NC_010102
(Salmonella enterica SGSC4150; SPB7)

4e-33

33) ECL_00426
( YP_003610941.1 )

shufflon-specific DNA recombinase

NC_014121
(Enterobacter cloacae ATCC 13047)

2e-29

34) Dd703_3048
( YP_002988643.1 )

integrase family protein

NC_012880
(Dickeya dadantii Ech703)

9e-28

35) PC1_0847
( YP_003016434.1 )

integrase family protein

NC_012917
(Pectobacterium carotovorum PC1)

2e-27

• Sequence Alignments

1) A458_18460 in NC_018028


> EF611304|1|G1|148807459|ABR13530.1|Pseudomonas_aeruginosa_PSE9|+|90..1211|-|-|site-specific 
recombinase
Length=373

 Score =  454 bits (1710),  Expect = 3e-129, Method: Compositional matrix adjust.
 Identities = 270/362 (75%), Positives = 315/362 (88%), Gaps = 10/362 (2%)

Query  1    MATIVKTEAGTWKALVRKTGWPTNTKTFRTKRDAEDWARRTEDEMVRGVYIQRSGSERLT  60
            MATIVKT +GTWKA++RK GWPT +KTFRTKRDA+DWAR TEDEMVRGVY++RS SE+ T
Sbjct  3    MATIVKTPSGTWKAVIRKQGWPTASKTFRTKRDADDWARSTEDEMVRGVYLRRSPSEKTT  62

Query  61   LEKALERYLAEVTPSKKPTTRKAEATKAKPLIQHLGKYSLAALSAEVIASYRDTRLN---  117
            LEKAL RYL EVTP+KK++T+KAE TKA PLI+HLGKYSLAALSA+VIA YRD RL+   
Sbjct  63   LEKALGRYLEEVTPTKKASTQKAEQTKAAPLIRHLGKYSLAALSADVIAEYRDKRLKETV  122

Query  118  -TLNKHG-----RPTSNNTVRLELALLSHLFTVAIQEWGLGLTFNPVLNIRKPSPGDGRD  171
             T  K+G     R  S NTVRLELALLS+LFTVAIQEW +GL  NPVLNIRKPSPG+GRD
Sbjct  123  RTKYKEGSDVTPRTVSANTVRLELALLSNLFTVAIQEWRIGLPQNPVLNIRKPSPGEGRD  182

Query  172  RRLSPDEERRLLAAVNNHSNPMLGWIVRIALETGMRSSEITGLRCHQVDLKKRVVRLADT  231
            RRL+PDEER+L+ AVN   NPMLGWIVRIA+ETGMRSSEIT+LR HQVDLKKRVV+L DT
Sbjct  183  RRLNPDEERKLFQAVNAYHNPMLGWIVRIAVETGMRSSEITSLRRHQVDLKKRVVKLLDT  242

Query  232  KNDSARTVPLTKLATEAFKAALENPVRPKDCDLVFFGEPGKDEQRRPYAFTKAWGLLKKK  291
            KN+ +RTVPLT+ A++AFK ALENP+RP D +L+FFGEPGKDE+RRPY F+K W  +KK+
Sbjct  243  KNGESRTVPLTQAAAQAFKDALENPIRPIDTNLIFFGEPGKDEKRRPYVFSKVWNEMKKR  302

Query  292  LGMPDLRFHDLRHEAVSRLVEGG-LSDQEVSAISGHKSMQMLKRYTHLRAEDLVAKLDKL  350
            LGM DLRFHDLRHEAVSRLVE+G L+DQ+V+AISGHKSMQMLKRYTHLRAEDLV+ LD++
Sbjct  303  LGMTDLRFHDLRHEAVSRLVESGQLTDQQVAAISGHKSMQMLKRYTHLRAEDLVTALDNI  362

Query  351  DR  352
            D+
Sbjct  363  DQ  364

2) rci in NC_014532


> EF611304|1|G1|148807459|ABR13530.1|Pseudomonas_aeruginosa_PSE9|+|90..1211|-|-|site-specific 
recombinase
Length=373

 Score =  429 bits (1616),  Expect = 8e-122, Method: Compositional matrix adjust.
 Identities = 249/360 (70%), Positives = 306/360 (85%), Gaps = 10/360 (2%)

Query  1    MATIVKTPSGSWKAVIRKTGWPTTAKTFRTKRDAQDWARRTEDEMVRGVYIQRSASERMT  60
            MATIVKTPSG+WKAVIRK GWPT++KTFRTKRDA+DWAR TEDEMVRGVY++RS+SE+ T
Sbjct  3    MATIVKTPSGTWKAVIRKQGWPTASKTFRTKRDADDWARSTEDEMVRGVYLRRSPSEKTT  62

Query  61   LEAALKRYLADVTPTKKPSTQKSERHKANTLIEHLGKYSLAALTPELIANFRDTRLNSLG  120
            LE AL RYL +VTPTKK+STQK+E+ KA  LI HLGKYSLAAL++++IA++RD RL+   
Sbjct  63   LEKALGRYLEEVTPTKKASTQKAEQTKAAPLIRHLGKYSLAALSADVIAEYRDKRLKETV  122

Query  121  RR---------GQPISANTVRLELALLGHLYTVAIQEWGLGLTYNPVQNIRKPSPGEGRD  171
            R           + +SANTVRLELALL++L+TVAIQEW +GL  NPV NIRKPSPGEGRD
Sbjct  123  RTKYKEGSDVTPRTVSANTVRLELALLSNLFTVAIQEWRIGLPQNPVLNIRKPSPGEGRD  182

Query  172  RRLSADEEKRLFAVLRQHSNPMLAWIARIALETGMRSSEILTLTRSQVDVKRRVVRLTDT  231
            RRL++DEE++LF  +    NPML+WI RIA+ETGMRSSEI +L R QVD+K+RVV+L DT
Sbjct  183  RRLNPDEERKLFQAVNAYHNPMLGWIVRIAVETGMRSSEITSLRRHQVDLKKRVVKLLDT  242

Query  232  KNNEARLVPLTQAATEVFKQALNNPVRPFDCDLVFFGEPGKDGKRGPYAYTKLWNQAKKQ  291
            KN E+R VPLTQAA++ FK+AL+NP+RP+D +L+FFGEPGKD KR PY ++K+WN+ KK+
Sbjct  243  KNGESRTVPLTQAAAQAFKDALENPIRPIDTNLIFFGEPGKDEKRRPYVFSKVWNEMKKR  302

Query  292  AGLDDFRFHDLRHEAVSRLVEAG-LSDQEVATISGHKSMQMLRRYTHLRAEDLVGKLDNI  350
             G+ D+RFHDLRHEAVSRLVE+G L+DQ+VA+ISGHKSMQML+RYTHLRAEDLV  LDNI
Sbjct  303  LGMTDLRFHDLRHEAVSRLVESGQLTDQQVAAISGHKSMQMLKRYTHLRAEDLVTALDNI  362

3) PSPTO_0535 in NC_004578


> EF611304|1|G1|148807459|ABR13530.1|Pseudomonas_aeruginosa_PSE9|+|90..1211|-|-|site-specific 
recombinase
Length=373

 Score =  421 bits (1586),  Expect = 2e-119, Method: Compositional matrix adjust.
 Identities = 258/365 (71%), Positives = 311/365 (86%), Gaps = 11/365 (3%)

Query  48   MATLVKTPSGTWKALIRKTGWPTVAKTFRTKRDAEDWSRRTEDEMVRGVYIQRSGSERMT  107
            MAT+VKTPSGTWKA+IRK GWPT +KTFRTKRDA+DW+R TEDEMVRGVY++RS SE+ T
Sbjct  3    MATIVKTPSGTWKAVIRKQGWPTASKTFRTKRDADDWARSTEDEMVRGVYLRRSPSEKTT  62

Query  108  LEAALKRYLSDITPTKKPTTQRGETSKAKKLIEHLGKYSLAALSADIIAGYRDKRLNEPS  167
            LE AL RYL ++TPTKK++TQ++E +KA  LI HLGKYSLAALSAD+IA YRDKRL+E  
Sbjct  63   LEKALGRYLEEVTPTKKASTQKAEQTKAAPLIRHLGKYSLAALSADVIAEYRDKRLKETV  122

Query  168  RGG----------TISNNTVRLELALLSHLYTVAIQEWGLGLTFNPVLNIRKPSPGDGrd  217
            R            T+S NTVRLELALLS+L+TVAIQEW +GL  NPVLNIRKPSPG+GRD
Sbjct  123  RTKYKEGSDVTPRTVSANTVRLELALLSNLFTVAIQEWRIGLPQNPVLNIRKPSPGEGRD  182

Query  218  rrlspeeerlllAAVNRHSNPMLGWIVCIALETGMRSSEISSLRRPQVDLAKRVIRLSDT  277
            RRL+P+EER L+ AVN   NPMLGWIV IA+ETGMRSSEI+SLRR QVDL KRV++L DT
Sbjct  183  RRLNPDEERKLFQAVNAYHNPMLGWIVRIAVETGMRSSEITSLRRHQVDLKKRVVKLLDT  242

Query  278  KNDGSRTVPLSKRATEVFKAAMDNPVRPIDCNLVFFGEPGKDGKRRPYTFTKIWGQLKKK  337
            KN+ SRTVPL++ A++ FK A++NP+RPID NL+FFGEPGKD KRRPY F+K+W ++KK+
Sbjct  243  KNGESRTVPLTQAAAQAFKDALENPIRPIDTNLIFFGEPGKDEKRRPYVFSKVWNEMKKR  302

Query  338  LDLPDFRFHDLRHEAVSRLVEGG-LSDQEVSAISGHKSMQMLKRYTHLRAEDLVARLDRI  396
            L++ D+RFHDLRHEAVSRLVE+G L+DQ+V+AISGHKSMQMLKRYTHLRAEDLV+ LD I
Sbjct  303  LGMTDLRFHDLRHEAVSRLVESGQLTDQQVAAISGHKSMQMLKRYTHLRAEDLVTALDNI  362

Query  397  GSAPQ  401
            + + Q
Sbjct  363  DQSRQ  367

4) PSEBR_a5153 in NC_015379


> EF611304|1|G1|148807459|ABR13530.1|Pseudomonas_aeruginosa_PSE9|+|90..1211|-|-|site-specific 
recombinase
Length=373

 Score =  418 bits (1574),  Expect = 2e-118, Method: Compositional matrix adjust.
 Identities = 263/364 (73%), Positives = 310/364 (86%), Gaps = 14/364 (3%)

Query  20   LQMATIVKTPAGTWKAVIRKTGWPTNAKTFRTKRDAEDWSRRTEDEMVRGVYIQRSGSER  79
            + MATIVKTP+GTWKAVIRK GWPT +KTFRTKRDA+DW+R TEDEMVRGVY++RS SE+
Sbjct  1    MMMATIVKTPSGTWKAVIRKQGWPTASKTFRTKRDADDWARSTEDEMVRGVYLRRSPSEK  60

Query  80   LTLEKALQQYLREVSPTKKPTTQRAEATKAQQLIRHLGKYSLAALSSEVIANYRDTRL--  137
             TLEKAL +YL EV+PTKK++TQ+AE TKA  LIRHLGKYSLAALS++VIA+YRD RL  
Sbjct  61   TTLEKALGRYLEEVTPTKKASTQKAEQTKAAPLIRHLGKYSLAALSADVIAEYRDKRLKE  120

Query  138  ---------GSLTNRGNPTSNNTVRLELALLSHLFTVAIQEWGLGLTFNPVLNIRKPSPG  188
                     + +T R    S NTVRLELALLS+LFTVAIQEW +GL  NPVLNIRKPSPG
Sbjct  121  TVRTKYKEGSDVTPRT--VSANTVRLELALLSNLFTVAIQEWRIGLPQNPVLNIRKPSPG  178

Query  189  EGrdrrlspeeerrllAAVNNHSNPMLGWIVRIALETGMRSSEITGLRRHQIDLKRRVVR  248
            EGRDRRL+P+EER+L+ AVN   NPMLGWIVRIA+ETGMRSSEIT+LRRHQ+DLK+RVV+
Sbjct  179  EGRDRRLNPDEERKLFQAVNAYHNPMLGWIVRIAVETGMRSSEITSLRRHQVDLKKRVVK  238

Query  249  LSDTKNDSARTVPLSRLATVTFQAALENPTRPQDCDLVFFGEPGKDGKRRPYAFTKVWGV  308
            L DTKN+ +RTVPL++ A+ +F+ ALENP RP D +L+FFGEPGKD KRRPY F+KVW  
Sbjct  239  LLDTKNGESRTVPLTQAAAQAFKDALENPIRPIDTNLIFFGEPGKDEKRRPYVFSKVWNE  298

Query  309  LKKKFGMPDLRFHDLRHEAVSRFVEGG-LSDQEVSAISGHKSMQMLKRYTHLRAEDLVGR  367
            +KK++GM DLRFHDLRHEAVSR+VE+G L+DQ+V+AISGHKSMQMLKRYTHLRAEDLV  
Sbjct  299  MKKRLGMTDLRFHDLRHEAVSRLVESGQLTDQQVAAISGHKSMQMLKRYTHLRAEDLVTA  358

Query  368  LDRI  371
            LD I
Sbjct  359  LDNI  362

5) NH44784_027851 in NC_021285


> EF611304|1|G1|148807459|ABR13530.1|Pseudomonas_aeruginosa_PSE9|+|90..1211|-|-|site-specific 
recombinase
Length=373

 Score =  414 bits (1558),  Expect = 4e-117, Method: Compositional matrix adjust.
 Identities = 233/362 (65%), Positives = 299/362 (83%), Gaps = 7/362 (1%)

Query  1    MATIVKTSSGTWKALIRKTGWPATAKTFRTKRDAEDWARRTEDEMVRGVYIQRAPAERMT  60
            MATIVKT+SGTWKA+IRK GWP+++KTFRTKRDA+DWAR TEDEMVRGVY++R+P+E+ T
Sbjct  3    MATIVKTPSGTWKAVIRKQGWPTASKTFRTKRDADDWARSTEDEMVRGVYLRRSPSEKTT  62

Query  61   VGAALTRYLKEVTPTKRESTQAGEHKKAQVIIRHLGKYSLAALNAEIVAQFRDMRLAGDP  120
            +  AL RYL EVTPTK+ STQ +E+ KA  +IRHLGKYSLAAL+A+++A++RD RL    
Sbjct  63   LEKALGRYLEEVTPTKKASTQKAEQTKAAPLIRHLGKYSLAALSADVIAEYRDKRLKETV  122

Query  121  ----DKHGKLRPR--SNNTVRLELALLGHLFTVAIKEWGIGLPFNPVSNIRRPAPGSGRN  174
                   + + PR  S NTVRLELALL++LFTVAI+EW IGLP NPV NIR+P+PG GR+
Sbjct  123  RTKYKEGSDVTPRTVSANTVRLELALLSNLFTVAIQEWRIGLPQNPVLNIRKPSPGEGRD  182

Query  175  RRLTPEEQTRLLQAVDRHSNPMFGWIVRIAVQTGMRLSEIATLRIRQVDIERRVVRLEHT  234
            RRL P+E+ +L+QAV+   NPM+GWIVRIAV+TGMR SEI++LR +QVD+ +RVV+L +T
Sbjct  183  RRLNPDEERKLFQAVNAYHNPMLGWIVRIAVETGMRSSEITSLRRHQVDLKKRVVKLLDT  242

Query  235  KNSSPRTVPLTAEATRVFTEALANPLRPAETELVFFGEPGRDGVRRPYLFDKAWTDAKRA  294
            KN+ +RTVPLT  A++ F +AL NP+RP +T+L+FFGEPG+D  RRPY+F K W + K+ 
Sbjct  243  KNGESRTVPLTQAAAQAFKDALENPIRPIDTNLIFFGEPGKDEKRRPYVFSKVWNEMKKR  302

Query  295  AGLEDFRFHDLRHEAVSRFVEAG-LSDQEVSAISGHKSMQMLKRYTHLRAEDLVQKLDRL  353
             G+ D+RFHDLRHEAVSR+VE+G L+DQ+V+AISGHKSMQMLKRYTHLRAEDLV  LD +
Sbjct  303  LGMTDLRFHDLRHEAVSRLVESGQLTDQQVAAISGHKSMQMLKRYTHLRAEDLVTALDNI  362

Query  354  AR  355
             +
Sbjct  363  DQ  364

6) XALc_2647 in NC_013722


> EF611304|1|G1|148807459|ABR13530.1|Pseudomonas_aeruginosa_PSE9|+|90..1211|-|-|site-specific 
recombinase
Length=373

 Score =  413 bits (1555),  Expect = 6e-117, Method: Compositional matrix adjust.
 Identities = 235/362 (65%), Positives = 300/362 (83%), Gaps = 3/362 (0%)

Query  1    MATIVKTPSGTWKALIRKTGWPATAKTFRTKRDAEDWARRTEDEMVRGIYIQRAPSERMT  60
            MATIVKTPSGTWKA+IRK GWP+++KTFRTKRDA+DWAR TEDEMVRG+Y++R+PSE+ T
Sbjct  3    MATIVKTPSGTWKAVIRKQGWPTASKTFRTKRDADDWARSTEDEMVRGVYLRRSPSEKTT  62

Query  61   IEDALKRYLSEVSPTKRQASADSDARHAKPLMQNLGRYSLAALTPELIAKYRDDRLAGLD  120
            +E AL RYL EV+PTK+ ++  ++   A PL+++LG+YSLAAL++++IA YRD RL    
Sbjct  63   LEKALGRYLEEVTPTKKASTQKAEQTKAAPLIRHLGKYSLAALSADVIAEYRDKRLKETV  122

Query  121  RKDAKGKPAPKPR--SPNTVRLDLALLGHLFNVAIKEWGIGLTYNPVQSIRRPAPSPGRD  178
            R   K  +   PR  S+NTVRL+LALL++LF VAI+EW IGL  NPV +IR+P+P+ GRD
Sbjct  123  RTKYKEGSDVTPRTVSANTVRLELALLSNLFTVAIQEWRIGLPQNPVLNIRKPSPGEGRD  182

Query  179  RRLTREEEIRLMVAVDAHSNPMLGWIVRIALETGMRSSEITGLRRSQVDLDRRVARLQET  238
            RRL  +EE +L  AV+A  NPMLGWIVRIA+ETGMRSSEIT+LRR QVDL +RV +L +T
Sbjct  183  RRLNPDEERKLFQAVNAYHNPMLGWIVRIAVETGMRSSEITSLRRHQVDLKKRVVKLLDT  242

Query  239  KNTMSRTVPLTVEATRLFREALNNPVRPIDTDLIFFGEPGRDNKRRAYQFNPIWMRIKKD  298
            KN  SRTVPLT  A++ F++AL+NP+RPIDT+LIFFGEPG+D+KRR+Y F+ +W  +KK 
Sbjct  243  KNGESRTVPLTQAAAQAFKDALENPIRPIDTNLIFFGEPGKDEKRRPYVFSKVWNEMKKR  302

Query  299  AGLPDFRFHDLRHEAVSRFVEAG-LSDQEVAAISGHKSMQMLKRYTHLRAEDLVGKLDQV  357
             G+ D+RFHDLRHEAVSR+VE+G L+DQ+VAAISGHKSMQMLKRYTHLRAEDLV  LD++
Sbjct  303  LGMTDLRFHDLRHEAVSRLVESGQLTDQQVAAISGHKSMQMLKRYTHLRAEDLVTALDNI  362

Query  358  AK  359
             +
Sbjct  363  DQ  364

7) AciX8_4316 in NC_016631


> EF611304|1|G1|148807459|ABR13530.1|Pseudomonas_aeruginosa_PSE9|+|90..1211|-|-|site-specific 
recombinase
Length=373

 Score =  409 bits (1540),  Expect = 1e-115, Method: Compositional matrix adjust.
 Identities = 223/366 (61%), Positives = 306/366 (84%), Gaps = 5/366 (1%)

Query  1    MATIVKTPSATWKAVIRKTGWPTTAKTFRTKRDAEDWSRRTEDEMVRGAYIQRAGADRLT  60
            MATIVKTPS+TWKAVIRK GWPT++KTFRTKRDA+DW+R TEDEMVRG Y++R+ +++ T
Sbjct  3    MATIVKTPSGTWKAVIRKQGWPTASKTFRTKRDADDWARSTEDEMVRGVYLRRSPSEKTT  62

Query  61   VADALTRYLAEITPSKRPSSQVSDRQRSAILTKHLGKYSLAAVTPEVAAKFRDVRLAGED  120
            +  AL RYL E+TP+K++S+Q +++ ++A L +HLGKYSLAA++++V A +RD RL    
Sbjct  63   LEKALGRYLEEVTPTKKASTQKAEQTKAAPLIRHLGKYSLAALSADVIAEYRDKRLKETV  122

Query  121  RKD--DIGGPVPR--SNDTVRLDLALLGHLFTIAIKEWGIGLPANPVMNIRRPTPAPGRN  176
            R    + ++  PR  S +TVRL+LALL++LFT+AI+EW IGLP NPV+NIR+P+P+ GR+
Sbjct  123  RTKYKEGSDVTPRTVSANTVRLELALLSNLFTVAIQEWRIGLPQNPVLNIRKPSPGEGRD  182

Query  177  RRLSAGEEAKLLKAVALHSNPMLRWIVSIALETGMRSSEITGLRRMQVDLDRRIVRLLET  236
            RRL+++EE KL++AV    NPML WIV IA+ETGMRSSEIT+LRR QVDL +R+V+LL+T
Sbjct  183  RRLNPDEERKLFQAVNAYHNPMLGWIVRIAVETGMRSSEITSLRRHQVDLKKRVVKLLDT  242

Query  237  KNTTPRTVPLSKDAVEIFREAITHPVRPIDTDLIFFGEPGRDGKRRPYNFNPVWLNIKRE  296
            KN  +RTVPL++ A + F++A+ +P+RPIDT+LIFFGEPG+D KRRPY F+ VW ++K+ 
Sbjct  243  KNGESRTVPLTQAAAQAFKDALENPIRPIDTNLIFFGEPGKDEKRRPYVFSKVWNEMKKR  302

Query  297  QGLADVRFHDMRHEAVSRFVEAG-FSDQEVSAISGHKSMQMLKRYTHLRAEDLVARMDEA  355
             G++D+RFHD+RHEAVSR+VE+G ++DQ+V+AISGHKSMQMLKRYTHLRAEDLV+ +D+ 
Sbjct  303  LGMTDLRFHDLRHEAVSRLVESGQLTDQQVAAISGHKSMQMLKRYTHLRAEDLVTALDNI  362

Query  356  ALRHRG  361
               ++G
Sbjct  363  DQSRQG  368

8) Bcen_2661 in NC_008060


> EF611304|1|G1|148807459|ABR13530.1|Pseudomonas_aeruginosa_PSE9|+|90..1211|-|-|site-specific 
recombinase
Length=373

 Score =  406 bits (1529),  Expect = 6e-115, Method: Compositional matrix adjust.
 Identities = 243/360 (68%), Positives = 290/360 (81%), Gaps = 16/360 (4%)

Query  1    MATIVKTPSGTWKAVIRKIGWPTSAKTFRTKRDAEDWARRTEDEMVRGVYLSRAPSEKLT  60
            MATIVKTPSGTWKAVIRK GWPT++KTFRTKRDA+DWAR TEDEMVRGVYL R+PSEK T
Sbjct  3    MATIVKTPSGTWKAVIRKQGWPTASKTFRTKRDADDWARSTEDEMVRGVYLRRSPSEKTT  62

Query  61   VSAALKRYMEEVSVTKKATTQRSESFSAKHLEAFFGKYSMAAVSAELVAKYRDERLAAGK  120
            +  AL RY+EEV+ TKKA+TQ++E   A  L   +GKYS+AA+SA+++A YRD RL    
Sbjct  63   LEKALGRYLEEVTPTKKASTQKAEQTKAAPLIRHLGKYSLAALSADVIAEYRDKRLKETV  122

Query  121  ---------------SNNTVRLELAMLGHLFRMAIQEWGIGLTFNPVANVRKPSPGAGRD  165
                           S NTVRLELA+L++LF +AIQEW IGL  NPV N+RKPSPG GRD
Sbjct  123  RTKYKEGSDVTPRTVSANTVRLELALLSNLFTVAIQEWRIGLPQNPVLNIRKPSPGEGRD  182

Query  166  RRLSRDEHQRLFAAADAHSNPMLGWIVRLAVETGMRSSEITGLCRSQVDLDRRVVTLRDT  225
            RRL+ DE+++LF A +A  NPMLGWIVR+AVETGMRSSEIT+L R QVDL +RVV L DT
Sbjct  183  RRLNPDEERKLFQAVNAYHNPMLGWIVRIAVETGMRSSEITSLRRHQVDLKKRVVKLLDT  242

Query  226  KNGSSRVVPLTREAAEVLRAALDNPIRPIDTDLVFFGEPGRDGKRKPYVFQKLWTGIVRD  285
            KNG SR VPLT+ AA+ ++ AL+NPIRPIDT+L+FFGEPG+D KR+PYVF K+W  + + 
Sbjct  243  KNGESRTVPLTQAAAQAFKDALENPIRPIDTNLIFFGEPGKDEKRRPYVFSKVWNEMKKR  302

Query  286  LGMVDLHFHDLRHEAVSRLVEAG-LSDQEVASISGHKSMQMLKRYTHLRAEDLVQKLDTL  344
            LGM DL+FHDLRHEAVSRLVE+G L+DQ+VA+ISGHKSMQMLKRYTHLRAEDLV  LD +
Sbjct  303  LGMTDLRFHDLRHEAVSRLVESGQLTDQQVAAISGHKSMQMLKRYTHLRAEDLVTALDNI  362

9) Bcen2424_0446 in NC_008542


> EF611304|1|G1|148807459|ABR13530.1|Pseudomonas_aeruginosa_PSE9|+|90..1211|-|-|site-specific 
recombinase
Length=373

 Score =  406 bits (1529),  Expect = 6e-115, Method: Compositional matrix adjust.
 Identities = 243/360 (68%), Positives = 290/360 (81%), Gaps = 16/360 (4%)

Query  1    MATIVKTPSGTWKAVIRKIGWPTSAKTFRTKRDAEDWARRTEDEMVRGVYLSRAPSEKLT  60
            MATIVKTPSGTWKAVIRK GWPT++KTFRTKRDA+DWAR TEDEMVRGVYL R+PSEK T
Sbjct  3    MATIVKTPSGTWKAVIRKQGWPTASKTFRTKRDADDWARSTEDEMVRGVYLRRSPSEKTT  62

Query  61   VSAALKRYMEEVSVTKKATTQRSESFSAKHLEAFFGKYSMAAVSAELVAKYRDERLAAGK  120
            +  AL RY+EEV+ TKKA+TQ++E   A  L   +GKYS+AA+SA+++A YRD RL    
Sbjct  63   LEKALGRYLEEVTPTKKASTQKAEQTKAAPLIRHLGKYSLAALSADVIAEYRDKRLKETV  122

Query  121  ---------------SNNTVRLELAMLGHLFRMAIQEWGIGLTFNPVANVRKPSPGAGRD  165
                           S NTVRLELA+L++LF +AIQEW IGL  NPV N+RKPSPG GRD
Sbjct  123  RTKYKEGSDVTPRTVSANTVRLELALLSNLFTVAIQEWRIGLPQNPVLNIRKPSPGEGRD  182

Query  166  RRLSRDEHQRLFAAADAHSNPMLGWIVRLAVETGMRSSEITGLCRSQVDLDRRVVTLRDT  225
            RRL+ DE+++LF A +A  NPMLGWIVR+AVETGMRSSEIT+L R QVDL +RVV L DT
Sbjct  183  RRLNPDEERKLFQAVNAYHNPMLGWIVRIAVETGMRSSEITSLRRHQVDLKKRVVKLLDT  242

Query  226  KNGSSRVVPLTREAAEVLRAALDNPIRPIDTDLVFFGEPGRDGKRKPYVFQKLWTGIVRD  285
            KNG SR VPLT+ AA+ ++ AL+NPIRPIDT+L+FFGEPG+D KR+PYVF K+W  + + 
Sbjct  243  KNGESRTVPLTQAAAQAFKDALENPIRPIDTNLIFFGEPGKDEKRRPYVFSKVWNEMKKR  302

Query  286  LGMVDLHFHDLRHEAVSRLVEAG-LSDQEVASISGHKSMQMLKRYTHLRAEDLVQKLDTL  344
            LGM DL+FHDLRHEAVSRLVE+G L+DQ+VA+ISGHKSMQMLKRYTHLRAEDLV  LD +
Sbjct  303  LGMTDLRFHDLRHEAVSRLVESGQLTDQQVAAISGHKSMQMLKRYTHLRAEDLVTALDNI  362

10) bgla_1g03980 in NC_015381


> EF611304|1|G1|148807459|ABR13530.1|Pseudomonas_aeruginosa_PSE9|+|90..1211|-|-|site-specific 
recombinase
Length=373

 Score =  405 bits (1525),  Expect = 1e-114, Method: Compositional matrix adjust.
 Identities = 241/360 (67%), Positives = 291/360 (81%), Gaps = 16/360 (4%)

Query  1    MATIVKTTSGTWKAVIRKTGWPTTAKTFRTKRDAEDWARRTEDEMVRGVYLSRAPSEKLT  60
            MATIVKT SGTWKAVIRK GWPT++KTFRTKRDA+DWAR TEDEMVRGVYL R+PSEK T
Sbjct  3    MATIVKTPSGTWKAVIRKQGWPTASKTFRTKRDADDWARSTEDEMVRGVYLRRSPSEKTT  62

Query  61   VSAALKRYMKEVSATKKATTQRSESFSAKHLEAFFGKYSMAAVSAELVAKYRDERLAAGK  120
            +  AL RY+ EV++TKKA+TQ++E   A  L   +GKYS+AA+SA+++A YRD RL    
Sbjct  63   LEKALGRYLEEVTPTKKASTQKAEQTKAAPLIRHLGKYSLAALSADVIAEYRDKRLKETV  122

Query  121  ---------------SNNTVRLELAMLGHLFRMAIQEWGIGLTFNPVANVRKPSPGAGRD  165
                           S NTVRLELA+L++LF +AIQEW IGL  NPV N+RKPSPG GRD
Sbjct  123  RTKYKEGSDVTPRTVSANTVRLELALLSNLFTVAIQEWRIGLPQNPVLNIRKPSPGEGRD  182

Query  166  RRLSRDEQQRLFAAADAHSNPMLGWIVRLAVETGMRSSEITGLCRSQVDLDRRVVTLRDT  225
            RRL+ DE+++LF A +A  NPMLGWIVR+AVETGMRSSEIT+L R QVDL +RVV L DT
Sbjct  183  RRLNPDEERKLFQAVNAYHNPMLGWIVRIAVETGMRSSEITSLRRHQVDLKKRVVKLLDT  242

Query  226  KNGSSRMVPLTREAAEVLRAALDNPIRPIDTDLVFFGEPGRDGKRKPYVFQKLWAGIVRD  285
            KNG SR VPLT+ AA+ ++ AL+NPIRPIDT+L+FFGEPG+D KR+PYVF K+W  + + 
Sbjct  243  KNGESRTVPLTQAAAQAFKDALENPIRPIDTNLIFFGEPGKDEKRRPYVFSKVWNEMKKR  302

Query  286  LGMADLHFHDLRHEAVSRLVEAG-LSDQEVASISGHKSMQMLKRYTHLRAEDLVQRLDSL  344
            LGM+DL+FHDLRHEAVSRLVE+G L+DQ+VA+ISGHKSMQMLKRYTHLRAEDLV  LD++
Sbjct  303  LGMTDLRFHDLRHEAVSRLVESGQLTDQQVAAISGHKSMQMLKRYTHLRAEDLVTALDNI  362

11) BN117_2912 in NC_018828


> EF611304|1|G1|148807459|ABR13530.1|Pseudomonas_aeruginosa_PSE9|+|90..1211|-|-|site-specific 
recombinase
Length=373

 Score =  403 bits (1515),  Expect = 1e-113, Method: Compositional matrix adjust.
 Identities = 237/362 (66%), Positives = 303/362 (84%), Gaps = 3/362 (0%)

Query  37   MATIVKTPSGTWKALIRKTGWPATAKTFRTKRDAEDWARRTEDEMVRGVYIQRAPSERMT  96
            MATIVKTPSGTWKA+IRK GWP+++KTFRTKRDA+DWAR TEDEMVRGVY++R+PSE+ T
Sbjct  3    MATIVKTPSGTWKAVIRKQGWPTASKTFRTKRDADDWARSTEDEMVRGVYLRRSPSEKTT  62

Query  97   IEDALKRYLSEISPTKRPASADSDARHAKPLMQNLGKYSLAALTPELIAKYRDDRLAGLD  156
            +E AL RYL E++PTK++++  ++   A PL+++LGKYSLAAL++++IA YRD RL    
Sbjct  63   LEKALGRYLEEVTPTKKASTQKAEQTKAAPLIRHLGKYSLAALSADVIAEYRDKRLKETV  122

Query  157  RKDAKGKPAPKPR--SPNTVRLDLALLGHLFNVAIKEWGIGLTYNPVQSIRRPAPSPGRD  214
            R   K  +   PR  S+NTVRL+LALL++LF VAI+EW IGL  NPV +IR+P+P+ GRD
Sbjct  123  RTKYKEGSDVTPRTVSANTVRLELALLSNLFTVAIQEWRIGLPQNPVLNIRKPSPGEGRD  182

Query  215  rrltreeetrlMAAVDAHSNPMLGWIVRIALETGMRSSEITGLRRNQVDLDRRVVRLQET  274
            RRL  +EE +L  AV+A  NPMLGWIVRIA+ETGMRSSEIT+LRR+QVDL +RVV+L +T
Sbjct  183  RRLNPDEERKLFQAVNAYHNPMLGWIVRIAVETGMRSSEITSLRRHQVDLKKRVVKLLDT  242

Query  275  KNTMSRTVPLTVEATRLFREALNNPVRPIDTDLIFFGEPGRDNKRRAYQFNPIWTRIKKD  334
            KN  SRTVPLT  A++ F++AL+NP+RPIDT+LIFFGEPG+D+KRR+Y F+ +W  +KK 
Sbjct  243  KNGESRTVPLTQAAAQAFKDALENPIRPIDTNLIFFGEPGKDEKRRPYVFSKVWNEMKKR  302

Query  335  AGVPDFRFHDLRHEAVSRFVEAG-LSDQEVAAISGHKSMQMLKRYTHLRAEDLVGKLDQV  393
             G+ D+RFHDLRHEAVSR+VE+G L+DQ+VAAISGHKSMQMLKRYTHLRAEDLV  LD++
Sbjct  303  LGMTDLRFHDLRHEAVSRLVESGQLTDQQVAAISGHKSMQMLKRYTHLRAEDLVTALDNI  362

Query  394  AK  395
             +
Sbjct  363  DQ  364

12) rci in NC_008260


> EF611304|1|G1|148807459|ABR13530.1|Pseudomonas_aeruginosa_PSE9|+|90..1211|-|-|site-specific 
recombinase
Length=373

 Score =  403 bits (1515),  Expect = 8e-114, Method: Compositional matrix adjust.
 Identities = 237/365 (65%), Positives = 301/365 (83%), Gaps = 3/365 (0%)

Query  1    MATLVKTPSGTWKAVIRKTGFPTTSKTFRTKRDAEDWSRRTEDEMVRGVYIQRAPAERMT  60
            MAT+VKTPSGTWKAVIRK G PT+SKTFRTKRDA+DW+R TEDEMVRGVY++R+P+E+ T
Sbjct  3    MATIVKTPSGTWKAVIRKQGWPTASKTFRTKRDADDWARSTEDEMVRGVYLRRSPSEKTT  62

Query  61   VADALKRYLAEVSPTKRPASAACDVRHSKPLIKGLGKYSLAALSPEIIAKYRDERLAGLD  120
            +  AL RYL EV+PTK++++   +   + PLI+ LGKYSLAALS+++IA YRD RL    
Sbjct  63   LEKALGRYLEEVTPTKKASTQKAEQTKAAPLIRHLGKYSLAALSADVIAEYRDKRLKETV  122

Query  121  RKDAKGNPDPRPR--SPNTVRLDLALLGHMFTTAIREWGIGLPSNPVQNIrrpapppgre  178
            R   K  +D  PR  S+NTVRL+LALL+++FT AI+EW IGLP NPV NIR+P+P  GR+
Sbjct  123  RTKYKEGSDVTPRTVSANTVRLELALLSNLFTVAIQEWRIGLPQNPVLNIRKPSPGEGRD  182

Query  179  rrLNQTEEDRLIAAVDSHSNPMLGWIVRLALETGMRSAEITTLRRNQIDLKRRVVRLLET  238
            RRLN  EE +L+ AV++  NPMLGWIVR+A+ETGMRS+EIT+LRR+Q+DLK+RVV+LL+T
Sbjct  183  RRLNPDEERKLFQAVNAYHNPMLGWIVRIAVETGMRSSEITSLRRHQVDLKKRVVKLLDT  242

Query  239  KNTAPRTVPLSSTATAILQEALANPVRPIDTDLVFFGEPGRDGQRRPYNFNKPWLKAKET  298
            KN  +RTVPL+ +A+  +++AL NP+RPIDT+L+FFGEPG+D +RRPY F+K W   K  
Sbjct  243  KNGESRTVPLTQAAAQAFKDALENPIRPIDTNLIFFGEPGKDEKRRPYVFSKVWNEMKKR  302

Query  299  AGMKELHFHDLRHEAVSRLVEGG-LSDQQVAAISGHKSMQMLKRYTHLRAEDLVNELDSI  357
             GM +L+FHDLRHEAVSRLVE+G L+DQQVAAISGHKSMQMLKRYTHLRAEDLV  LD+I
Sbjct  303  LGMTDLRFHDLRHEAVSRLVESGQLTDQQVAAISGHKSMQMLKRYTHLRAEDLVTALDNI  362

Query  358  ADRRN  362
             + R+
Sbjct  363  DQSRQ  367

13) XOO0599 in NC_006834


> EF611304|1|G1|148807459|ABR13530.1|Pseudomonas_aeruginosa_PSE9|+|90..1211|-|-|site-specific 
recombinase
Length=373

 Score =  402 bits (1513),  Expect = 1e-113, Method: Compositional matrix adjust.
 Identities = 237/360 (66%), Positives = 302/360 (84%), Gaps = 3/360 (0%)

Query  37   MATIVKTPSGTWKALVRKTGWPATAKTFRTKRDAEDWARRTEDEMVRGVYIQRAPSERMT  96
            MATIVKTPSGTWKA++RK GWP+++KTFRTKRDA+DWAR TEDEMVRGVY++R+PSE+ T
Sbjct  3    MATIVKTPSGTWKAVIRKQGWPTASKTFRTKRDADDWARSTEDEMVRGVYLRRSPSEKTT  62

Query  97   IEDALKRYLSEISPTKRPASADSDARHAKPLMQNLGKYSLAALTPELIAKYRDDRLAGLD  156
            +E AL RYL E++PTK++++  ++   A PL+++LGKYSLAAL++++IA YRD RL    
Sbjct  63   LEKALGRYLEEVTPTKKASTQKAEQTKAAPLIRHLGKYSLAALSADVIAEYRDKRLKETV  122

Query  157  RKDAKGKPAPKPR--SPNTVRLDLALLGHLFNVAIKEWGIGLTYNPVQSIRRPAPSPGRD  214
            R   K  +   PR  S+NTVRL+LALL++LF VAI+EW IGL  NPV +IR+P+P+ GRD
Sbjct  123  RTKYKEGSDVTPRTVSANTVRLELALLSNLFTVAIQEWRIGLPQNPVLNIRKPSPGEGRD  182

Query  215  rrltreeetrlMAAVDAHSNPMLGWIVRIALETGMRSSEITGLRRNQVDLDRRVVRLQET  274
            RRL  +EE +L  AV+A  NPMLGWIVRIA+ETGMRSSEIT+LRR+QVDL +RVV+L +T
Sbjct  183  RRLNPDEERKLFQAVNAYHNPMLGWIVRIAVETGMRSSEITSLRRHQVDLKKRVVKLLDT  242

Query  275  KNTMSRTVPLTVEATRLFREALNNPVRPIDTNLIFFGEPGRDNKRRAYQFNPIWTRIKKD  334
            KN  SRTVPLT  A++ F++AL+NP+RPIDTNLIFFGEPG+D+KRR+Y F+ +W  +KK 
Sbjct  243  KNGESRTVPLTQAAAQAFKDALENPIRPIDTNLIFFGEPGKDEKRRPYVFSKVWNEMKKR  302

Query  335  AGVPDFRFHDLRHEAVSRFVEAG-LSDQEVAAISGHKSMQMLKRYTHLRAEDLVGKLDQV  393
             G+ D+RFHDLRHEAVSR+VE+G L+DQ+VAAISGHKSMQMLKRYTHLRAEDLV  LD++
Sbjct  303  LGMTDLRFHDLRHEAVSRLVESGQLTDQQVAAISGHKSMQMLKRYTHLRAEDLVTALDNI  362

14) Rpic12D_2854 in NC_012856


> EF611304|1|G1|148807459|ABR13530.1|Pseudomonas_aeruginosa_PSE9|+|90..1211|-|-|site-specific 
recombinase
Length=373

 Score =  402 bits (1511),  Expect = 2e-113, Method: Compositional matrix adjust.
 Identities = 241/361 (67%), Positives = 294/361 (82%), Gaps = 16/361 (4%)

Query  1    MATIVKTPSGTWKAVIRKIGWPTTAKTFRTKRDAEDWARRTEDEMVRGVYLSRGPSEKLT  60
            MATIVKTPSGTWKAVIRK GWPT++KTFRTKRDA+DWAR TEDEMVRGVYL R+PSEK T
Sbjct  3    MATIVKTPSGTWKAVIRKQGWPTASKTFRTKRDADDWARSTEDEMVRGVYLRRSPSEKTT  62

Query  61   VAGALRRYMEEVSVTKKPTTQRSERFTAQHLEAFFGKYSMAAVSADLVAKYRDVRLAAGK  120
            +  AL RY+EEV+ TKK++TQ++E+  A  L   +GKYS+AA+SAD++A YRD RL    
Sbjct  63   LEKALGRYLEEVTPTKKASTQKAEQTKAAPLIRHLGKYSLAALSADVIAEYRDKRLKETV  122

Query  121  ---------------SNNTVRIELAMLGHLFRTAIQEWSIGLTFNPVANIRKPSPGTGRD  165
                           S NTVR+ELA+L++LF  AIQEW IGL  NPV NIRKPSPG GRD
Sbjct  123  RTKYKEGSDVTPRTVSANTVRLELALLSNLFTVAIQEWRIGLPQNPVLNIRKPSPGEGRD  182

Query  166  RRLSLDEQARLFAAVSAHSNPMLGWIVGLAVETGMRSSEIATLRRSQVDLNRRVVNLRDT  225
            RRL+ DE+ +LF AV+A  NPMLGWIV +AVETGMRSSEI++LRR QVDL++RVV+L DT
Sbjct  183  RRLNPDEERKLFQAVNAYHNPMLGWIVRIAVETGMRSSEITSLRRHQVDLKKRVVKLLDT  242

Query  226  KNGSARVVPLTRAAADVLRLALSNPIRPLDSDLVFFGEPGRDGKRRPYVFQKLWTSIVRD  285
            KNG +R VPLT+AAA+ ++ AL NPIRP+D++L+FFGEPG+D KRRPYVF K+W  + + 
Sbjct  243  KNGESRTVPLTQAAAQAFKDALENPIRPIDTNLIFFGEPGKDEKRRPYVFSKVWNEMKKR  302

Query  286  IGLADLHFHDLRHEAVSRLVEAG-LSDQEVAAISGHKSMQMLKRYTHLRAEDLVEKLDAV  344
            +G++DL+FHDLRHEAVSRLVE+G L+DQ+VAAISGHKSMQMLKRYTHLRAEDLV  LD +
Sbjct  303  LGMTDLRFHDLRHEAVSRLVESGQLTDQQVAAISGHKSMQMLKRYTHLRAEDLVTALDNI  362

Query  345  N  345
            +
Sbjct  363  D  363

15) Rpic_3201 in NC_010682


> EF611304|1|G1|148807459|ABR13530.1|Pseudomonas_aeruginosa_PSE9|+|90..1211|-|-|site-specific 
recombinase
Length=373

 Score =  402 bits (1514),  Expect = 9e-114, Method: Compositional matrix adjust.
 Identities = 241/360 (67%), Positives = 292/360 (82%), Gaps = 16/360 (4%)

Query  1    MATIVKTPSGTWKAVIRKLGWPTTAKTFRTKRDAEDWARRTEDEMVRGVYLSRAPSEKLT  60
            MATIVKTPSGTWKAVIRK GWPT++KTFRTKRDA+DWAR TEDEMVRGVYL R+PSEK T
Sbjct  3    MATIVKTPSGTWKAVIRKQGWPTASKTFRTKRDADDWARSTEDEMVRGVYLRRSPSEKTT  62

Query  61   VAGALKRYMEEVSVTKKPTTQRSERFTAQHLEAFFGKYSMAAVSADLVAKYRDARLAAGK  120
            +  AL RY+EEV+ TKK++TQ++E+  A  L   +GKYS+AA+SAD++A YRD RL    
Sbjct  63   LEKALGRYLEEVTPTKKASTQKAEQTKAAPLIRHLGKYSLAALSADVIAEYRDKRLKETV  122

Query  121  ---------------SNNTVRIELAMLGHLFRTAIQEWSIGLTFNPVANIRKPSPGAGRD  165
                           S NTVR+ELA+L++LF  AIQEW IGL  NPV NIRKPSPG GRD
Sbjct  123  RTKYKEGSDVTPRTVSANTVRLELALLSNLFTVAIQEWRIGLPQNPVLNIRKPSPGEGRD  182

Query  166  RRLSLDEQARLFAAVSAHSNPMLGWIVSLAVETGMRSSEIATLRRSQVDLNRRVVTLRDT  225
            RRL+ DE+ +LF AV+A  NPMLGWIV +AVETGMRSSEI++LRR QVDL++RVV L DT
Sbjct  183  RRLNPDEERKLFQAVNAYHNPMLGWIVRIAVETGMRSSEITSLRRHQVDLKKRVVKLLDT  242

Query  226  KNGSARVVPLTRAAADVLQLALGNPIRPLDSDLVFFGEPGRDGKRRPYVFQKLWASIVRD  285
            KNG +R VPLT+AAA+ ++ AL NPIRP+D++L+FFGEPG+D KRRPYVF K+W  + + 
Sbjct  243  KNGESRTVPLTQAAAQAFKDALENPIRPIDTNLIFFGEPGKDEKRRPYVFSKVWNEMKKR  302

Query  286  MGLADLHFHDLRHEAVSRLVEAG-LSDQEVAAISGHKSMQMLKRYTHLRAEDLVEKLDAV  344
            +G++DL+FHDLRHEAVSRLVE+G L+DQ+VAAISGHKSMQMLKRYTHLRAEDLV  LD +
Sbjct  303  LGMTDLRFHDLRHEAVSRLVESGQLTDQQVAAISGHKSMQMLKRYTHLRAEDLVTALDNI  362

16) GBP346_A0729 in NC_012695


> EF611304|1|G1|148807459|ABR13530.1|Pseudomonas_aeruginosa_PSE9|+|90..1211|-|-|site-specific 
recombinase
Length=373

 Score =  402 bits (1514),  Expect = 9e-114, Method: Compositional matrix adjust.
 Identities = 236/365 (65%), Positives = 297/365 (82%), Gaps = 16/365 (4%)

Query  1    MAALTKTPSGTWKATIRRVGWPTAAKTFRTKRDAEDWARRTEDEMVRGVFIQRAPSEKTT  60
            MA++ KTPSGTWKA IR+ GWPTA+KTFRTKRDA+DWAR TEDEMVRGV+++R+PSEKTT
Sbjct  3    MATIVKTPSGTWKAVIRKQGWPTASKTFRTKRDADDWARSTEDEMVRGVYLRRSPSEKTT  62

Query  61   VADALDRYEREIVPTKKASTQRREGARIRELKANFGKYSLAAVTPDLVSRYRDDRL----  116
            +  AL+RY  E+ PTKKASTQ+ E ++   L  ++GKYSLAA+++D+++ YRD RL    
Sbjct  63   LEKALGRYLEEVTPTKKASTQKAEQTKAAPLIRHLGKYSLAALSADVIAEYRDKRLKETV  122

Query  117  -----------ARGKANNTVRLELALLGHLFNVAIKEWHIGLIFNPVANIRKPSPGEGRN  165
                       +R  + NTVRLELALL++LF VAI+EW+IGL  NPV NIRKPSPGEGR+
Sbjct  123  RTKYKEGSDVTPRTVSANTVRLELALLSNLFTVAIQEWRIGLPQNPVLNIRKPSPGEGRD  182

Query  166  RRLSESEQAKLLATVDQHSNPMLGWIVRLAIETGMRQSEILGLRRGQVDLERRVVRLTDT  225
            RRL+  E+ KL+ +V+   NPMLGWIVR+A+ETGMR SEI +LRR QVDL +RVV+L DT
Sbjct  183  RRLNPDEERKLFQAVNAYHNPMLGWIVRIAVETGMRSSEITSLRRHQVDLKKRVVKLLDT  242

Query  226  KNNAARTVPLTKLAALVLQNALGNPVRPIDTDLVFFGEPGRDGKRRAYQFTKVWNGLKKR  285
            KN  +RTVPLT+ AA  +++AL NP+RPIDT+L+FFGEPG+D KRR+Y F+KVWN +KKR
Sbjct  243  KNGESRTVPLTQAAAQAFKDALENPIRPIDTNLIFFGEPGKDEKRRPYVFSKVWNEMKKR  302

Query  286  TGLIDFRFHDLRHEAVSRLVEAG-LTDQEVASISGHKSMQMLRRYTHLRAEDLVSKLDAF  344
             G+ D+RFHDLRHEAVSRLVE+G LTDQ+VA+ISGHKSMQML+RYTHLRAEDLV+ LD +
Sbjct  303  LGMTDLRFHDLRHEAVSRLVESGQLTDQQVAAISGHKSMQMLKRYTHLRAEDLVTALDNI  362

Query  345  ASSRR  349
              SR+
Sbjct  363  DQSRQ  367

17) PT7_2191 in NC_015458


> EF611304|1|G1|148807459|ABR13530.1|Pseudomonas_aeruginosa_PSE9|+|90..1211|-|-|site-specific 
recombinase
Length=373

 Score =  399 bits (1500),  Expect = 1e-112, Method: Compositional matrix adjust.
 Identities = 241/362 (67%), Positives = 306/362 (85%), Gaps = 7/362 (1%)

Query  1    MATIIKTPSGTWKALIRKTGWPATAKTFRTKRDAEDWARRTEDEMVRGMYIQRAPAERMI  60
            MATI+KTPSGTWKA+IRK GWP+++KTFRTKRDA+DWAR TEDEMVRG+Y++R+P+E+  
Sbjct  3    MATIVKTPSGTWKAVIRKQGWPTASKTFRTKRDADDWARSTEDEMVRGVYLRRSPSEKTT  62

Query  61   VEAALKRYLREVTPTKRESTQIGEHKKAQALIKHLGKYSLAALSADIVAQYRDARLAGDE  120
            +E AL RYL EVTPTK+ STQ +E+ KA +LI+HLGKYSLAALSAD++A+YRD RL    
Sbjct  63   LEKALGRYLEEVTPTKKASTQKAEQTKAAPLIRHLGKYSLAALSADVIAEYRDKRLKETV  122

Query  121  ----DENGKRVPR--SNNTVRLELALLGHLFTVAIKEWGIGLPFNPVSNIrrpapgagrn  174
                 E +   PR  S NTVRLELALL++LFTVAI+EW IGLP NPV NIR+P+PG GR+
Sbjct  123  RTKYKEGSDVTPRTVSANTVRLELALLSNLFTVAIQEWRIGLPQNPVLNIRKPSPGEGRD  182

Query  175  rrLTPTENKRLLTAVDAYSNPMFSWIVRVALETGMRLSEIAGLRLGQVDMQKRVVRLEHT  234
            RRL P E+++L+ AV+AY NPM++WIVR+A+ETGMR SEI++LR  QVD++KRVV+L +T
Sbjct  183  RRLNPDEERKLFQAVNAYHNPMLGWIVRIAVETGMRSSEITSLRRHQVDLKKRVVKLLDT  242

Query  235  KNSSPRTVPLTKAATSVFQAALDNPLRPPETDLVFFGEPGKDGMRRPYLFDKAWSDAKKA  294
            KN+ +RTVPLT+AA+  F+ AL+NP+RP +T+L+FFGEPGKD  RRPY+F K W++ KK 
Sbjct  243  KNGESRTVPLTQAAAQAFKDALENPIRPIDTNLIFFGEPGKDEKRRPYVFSKVWNEMKKR  302

Query  295  AGLVDFRFHDLRHEAVSRLVEAG-LSDQEVAAISGHKSMQMLKRYTHLRAEDLVGRLDEL  353
             G+ D+RFHDLRHEAVSRLVE+G L+DQ+VAAISGHKSMQMLKRYTHLRAEDLV  LD++
Sbjct  303  LGMTDLRFHDLRHEAVSRLVESGQLTDQQVAAISGHKSMQMLKRYTHLRAEDLVTALDNI  362

Query  354  ER  355
            ++
Sbjct  363  DQ  364

18) BDL_2281 in NC_021884


> EF611304|1|G1|148807459|ABR13530.1|Pseudomonas_aeruginosa_PSE9|+|90..1211|-|-|site-specific 
recombinase
Length=373

 Score =  393 bits (1480),  Expect = 4e-111, Method: Compositional matrix adjust.
 Identities = 230/360 (64%), Positives = 286/360 (80%), Gaps = 16/360 (4%)

Query  1    MAVIQKRESGNWKAIVRKNGWPTTIKTFRTKRDAEDWARRTEDEMVRGVYLSRAPSEKLT  60
            MA I K  SG WKA++RK+GWPT+ KTFRTKRDA+DWAR TEDEMVRGVYL R+PSEK T
Sbjct  3    MATIVKTPSGTWKAVIRKQGWPTASKTFRTKRDADDWARSTEDEMVRGVYLRRSPSEKTT  62

Query  61   VSAALKRYMEEVSITKKATTQRSERFTSQHLAAFFGKYSMAAVSAELVAKYRDERL----  116
            +  AL RY+EEV+ TKKA+TQ++E+  +  L   +GKYS+AA+SA+++A YRD RL    
Sbjct  63   LEKALGRYLEEVTPTKKASTQKAEQTKAAPLIRHLGKYSLAALSADVIAEYRDKRLKETV  122

Query  117  -----------AAGKSNNTVRIELAMLGHLFRVAIQEWGIGLTFNPVANIRKPSPGAGRD  165
                       +   S NTVR+ELA+L++LF VAIQEW IGL  NPV NIRKPSPG GRD
Sbjct  123  RTKYKEGSDVTPRTVSANTVRLELALLSNLFTVAIQEWRIGLPQNPVLNIRKPSPGEGRD  182

Query  166  RRLTPEEQQRLFAAADAHSNPILGWIVRLAVETGMRSSEITGLHRSQVDLNRRVVTLKDT  225
            RRL P+E+++LF A +A  NP+LGWIVR+AVETGMRSSEIT+L+R QVDL++RVV L DT
Sbjct  183  RRLNPDEERKLFQAVNAYHNPMLGWIVRIAVETGMRSSEITSLRRHQVDLKKRVVKLLDT  242

Query  226  KNGSVRLVPLTRVAVEILRSALDNPIRPIDVDLVFFGEPGRDGKRKPYVFQKLWASIVQT  285
            KNG  R VPLT+ A + ++ AL+NPIRPID +L+FFGEPG+D KR+PYVF K+W  + + 
Sbjct  243  KNGESRTVPLTQAAAQAFKDALENPIRPIDTNLIFFGEPGKDEKRRPYVFSKVWNEMKKR  302

Query  286  AGLADLHFHDLRHEAVSRLVEAG-LSDQEVASISGHKSMQMLKRYTHLRAEDLVEKLDRL  344
             G++DL+FHDLRHEAVSRLVE+G L+DQ+VA+ISGHKSMQMLKRYTHLRAEDLV  LD +
Sbjct  303  LGMTDLRFHDLRHEAVSRLVESGQLTDQQVAAISGHKSMQMLKRYTHLRAEDLVTALDNI  362

19) Atc_1024 in NC_015850


> EF611304|1|G1|148807459|ABR13530.1|Pseudomonas_aeruginosa_PSE9|+|90..1211|-|-|site-specific 
recombinase
Length=373

 Score =  201 bits (747),  Expect = 4e-53, Method: Compositional matrix adjust.
 Identities = 158/351 (46%), Positives = 216/351 (62%), Gaps = 37/351 (10%)

Query  16   GWKASVRRRGFPPQYQTFRTRKEAEAWAVVIESEMTRGVWRDRSESEGTTLAECMDRYLL  75
             WKA +R++G P   +TFRT+++A+ WA   E EM RGV   RS SE TTL   ++RYL 
Sbjct  13   TWKAVIRKQGWPTASKTFRTKRDADDWARSTEDEMVRGVYLRRSPSEKTTLEKALGRYLE  72

Query  76   EVVPTKKGGRREVDYVNQWKARP-IAHL--Y---------MSSVRGKDVAAAMRDMEAEG  123
            EV PTKK++ +  +   Q KA P I HL  Y         ++  R+K +  ++R    EG
Sbjct  73   EVTPTKKASTQKAE---QTKAAPLIRHLGKYSLAALSADVIAEYRDKRLKETVRTKYKEG  129

Query  124  K-------GANTIRLHLALLSHLFKVARTEWGMEAISNPVESVRKPRLPQGRDRRLVGDE  176
                    +ANT+RL+LALLS+LF VA  EW +    NPV ++RKP   +GRDRRL  DE
Sbjct  130  SDVTPRTVSANTVRLELALLSNLFTVAIQEWRIGLPQNPVLNIRKPSPGEGRDRRLNPDE  189

Query  177  ECRLLAACQSVNPELAA-IVRFAIETAMRQGEIMGLAWDAVNLAQRTVTLNETKNGTKRV  235
            E +L+ A ++ +  + + IVR+A+ET+MR +EI +L ++ V+L +R V L +TKNG  R 
Sbjct  190  ERKLFQAVNAYHNPMLGWIVRIAVETGMRSSEITSLRRHQVDLKKRVVKLLDTKNGESRT  249

Query  236  VPLSAAACK----VLSELPRRIDGKVWAYGQEGVK-----YAFPAA----CRRAGIKDLR  282
            VPL+ AA +     L +  R ID ++  +G+ G       Y F+       +R G+ DLR
Sbjct  250  VPLTQAAAQAFKDALENPIRPIDTNLIFFGEPGKDEKRRPYVFSKVWNEMKKRLGMTDLR  309

Query  283  FHDLRHEATSRLFEKG-LNLMQVAAITGHKTLQMLKRYTHLRAEDLARMLD  332
            FHDLRHEA SRL E G L   QVAAI+GHK++QMLKRYTHLRAEDL   LD
Sbjct  310  FHDLRHEAVSRLVESGQLTDQQVAAISGHKSMQMLKRYTHLRAEDLVTALD  360

20) LFML04_0664 in NC_018649


> EF611304|1|G1|148807459|ABR13530.1|Pseudomonas_aeruginosa_PSE9|+|90..1211|-|-|site-specific 
recombinase
Length=373

 Score =  201 bits (746),  Expect = 5e-53, Method: Compositional matrix adjust.
 Identities = 156/368 (43%), Positives = 227/368 (62%), Gaps = 34/368 (9%)

Query  1    MAAIRERGSYQWQAQVIRKGFPSQYKTFNNKSDAEKWARLIESEMDRGAFFSRKEAENTT  60
            MA+I    S  W+A + ++G P+  KTF  K DA+ WAR  E EM RG ++ R  +E+TT
Sbjct  3    MATIVKTPSGTWKAVIRKQGWPTASKTFRTKRDADDWARSTEDEMVRGVYLRRSPSEKTT  62

Query  61   LSEALDRYLTEITEKKKGSYQ--ESRRIENLKIHSLGKRFLATIQGRDIAEYRDERLA--  116
            L  AL+RYL E+T  KK+S Q  E  +   L I+ LGK  LA++ +  IAEYRD RL   
Sbjct  63   LEKALGRYLEEVTPTKKASTQKAEQTKAAPL-IRHLGKYSLAALSADVIAEYRDKRLKET  121

Query  117  --------------TVSPATVRRELVILSHLFTVASKEWGMSGLGNPVQAIRLPSGRGVS  162
                          TVS+ TVR EL +LS+LFTVA +EW ++   NPV  IR PS  G +
Sbjct  122  VRTKYKEGSDVTPRTVSANTVRLELALLSNLFTVAIQEWRIGLPQNPVLNIRKPSP-GEG  180

Query  163  RDRRLNPGEETALLDACEKYGGD-LPHVVLLALETAMRRGEIAGMTWDDVDLKKRTVTLP  221
            RDRRLNP+EE  L++A + Y    L  +V +A+ET+MR +EI+++ +++VDLKKR V L 
Sbjct  181  RDRRLNPDEERKLFQAVNAYHNPMLGWIVRIAVETGMRSSEITSLRRHQVDLKKRVVKLL  240

Query  222  ETKTGEVRIVSLSSEAIR----ILSSIPRRIDGRVFGYTDP--HSITWAFI------HAC  269
            +TK GE R V+L+  A +     L +  R ID  ++ + +P  +   ++++      +  
Sbjct  241  DTKNGESRTVPLTQAAAQAFKDALENPIRPIDTNLIFFGEPGKDEKRRPYVFSKVWNEMK  300

Query  270  KKAGINGLTFHDLRHEATSRLFELG-LSAEKVKKITGHKTYQMLARYTHLKAEDIAEEID  328
            K+ G+ +L FHDLRHEA SRL E G L+ ++V  I+GHK+ QML RYTHL+AED+   +D
Sbjct  301  KRLGMTDLRFHDLRHEAVSRLVESGQLTDQQVAAISGHKSMQMLKRYTHLRAEDLVTALD  360

Query  329  KLKKEKSG  336
            ++ + + G
Sbjct  361  NIDQSRQG  368

21) Tbd_1808 in NC_007404


> EF611304|1|G1|148807459|ABR13530.1|Pseudomonas_aeruginosa_PSE9|+|90..1211|-|-|site-specific 
recombinase
Length=373

 Score =  193 bits (715),  Expect = 1e-50, Method: Compositional matrix adjust.
 Identities = 153/382 (41%), Positives = 228/382 (60%), Gaps = 54/382 (14%)

Query  1    MATIRKRGELQWQAIVKRKGYPLQSKTWNTRKEAEAWARQIESEMDRGVFVSRAEVERTT  60
            MATI K     W+A+++++G P  SKT  T+++A+ WAR  E EM RGV++ R+  E+TT
Sbjct  3    MATIVKTPSGTWKAVIRKQGWPTASKTFRTKRDADDWARSTEDEMVRGVYLRRSPSEKTT  62

Query  61   LQDLIGRYRIEVLPNKRG---KHFGPALRVLEQHLGKYSLAALSPKLIAGFRDKRTKA--  115
            L+  +GRY  EV P K++   K        L +HLGKYSLAALS+ +IA +RDKR K   
Sbjct  63   LEKALGRYLEEVTPTKKASTQKAEQTKAAPLIRHLGKYSLAALSADVIAEYRDKRLKETV  122

Query  116  -------------GLSASTVKKEINLLSKLIDLAGKEWGVALPANPCAMVSRPVEKNARD  162
                          +SA+TV+ E+ LLS+L+ +A +EW ++LP NP   + +P   ++RD
Sbjct  123  RTKYKEGSDVTPRTVSANTVRLELALLSNLFTVAIQEWRIGLPQNPVLNIRKPSPGEGRD  182

Query  163  RRLQPEEEKYLLTACEQ-HVALLS---RFALETAARLGELLALRWADVDTTKRVMVIRGI  218
            RRL+P+EE+ L+ A +  H ++L+   R+A+ET+ R +E+ +LR+ +VD  KR  V++ +
Sbjct  183  RRLNPDEERKLFQAVNAYHNPMLGWIVRIAVETGMRSSEITSLRRHQVDLKKR--VVKLL  240

Query  219  DERGTKSGDALRAVPLSPAAVSVL-DELKKLPRGIDGRVFYWWKASDS-------FSKTW  270
            D   TK+G++ R+VPL+ AA   + D L +  R ID  +++   ++         FSK W
Sbjct  241  D---TKNGES-RTVPLTQAAAQAFKDALENPIRPIDTNLIFFGEPGKDEKRRPYVFSKVW  296

Query  271  GRALTRAHASYIADCEKAGGEPDQAFLIDLRFHDLRHEATSRLFEKGVFDSMEVASITGH  330
                 R                    + DLRFHDLRHEA SRL E G +   +VA+I+GH
Sbjct  297  NEMKKRLG------------------MTDLRFHDLRHEAVSRLVESGQLTDQQVAAISGH  338

Query  331  KTLAMLKRYTHLRAEDLAKKLG  352
            K++ MLKRYTHLRAEDL   L+
Sbjct  339  KSMQMLKRYTHLRAEDLVTALD  360

22) Acife_0402 in NC_015942


> EF611304|1|G1|148807459|ABR13530.1|Pseudomonas_aeruginosa_PSE9|+|90..1211|-|-|site-specific 
recombinase
Length=373

 Score =  190 bits (704),  Expect = 1e-49, Method: Compositional matrix adjust.
 Identities = 147/343 (43%), Positives = 217/343 (64%), Gaps = 31/343 (9%)

Query  20   GWQAIIRKRGHPSQTRTFRTKRDAEAWAKVTESEMLRGVWLDRSEAESTTLGEALQRYAD  79
             W+A+IRK+G P+ ++TFRTKRDA+ WA+ TE EM+RGV L RS +E TTL  AL RY +
Sbjct  13   TWKAVIRKQGWPTASKTFRTKRDADDWARSTEDEMVRGVYLRRSPSEKTTLEKALGRYLE  72

Query  80   EISINKKGSAQELCRIRQW-LERPISKRTLNTLRGKDFAAYVKSRLNE------------  126
            E++  KK+S+Q   + +   L R ++K +L +L +  +A Y   RL+E            
Sbjct  73   EVTPTKKASTQKAEQTKAAPLIRHLGKYSLAALSADVIAEYRDKRLKETVRTKYKEGSDV  132

Query  127  ---GVSPNTVRLELAIVGNLFTVAAREWGMESLVNPMRPIKLPAPAKGRNRRIQPGEWGA  183
                VS+NTVRLELA+++NLFTVA +EW +    NP+  I+ P+P+ GR+RR++P+E   
Sbjct  133  TPRTVSANTVRLELALLSNLFTVAIQEWRIGLPQNPVLNIRKPSPGEGRDRRLNPDEERK  192

Query  184  LIAQL-PYPHDH---AVVLLVETAMRRGELSGMRWEDVQWTAPSILLQDTKNGESREVPL  239
            L+  + +Y +      V + VET+MR +E++++R+++V+     + L DTKNGESR VPL
Sbjct  193  LFQAVNAYHNPMLGWIVRIAVETGMRSSEITSLRRHQVDLKKRVVKLLDTKNGESRTVPL  252

Query  240  SRAALQILHD-LGGTPKATGSVWKTMATHS---------FSQAFIRACDRASIEDLRLHD  289
            ++AA Q + D L    ++ ++     +  +         FS+       R ++ DLR+HD
Sbjct  253  TQAAAQAFKDALENPIRPIDTNLIFFGEPGKDEKRRPYVFSKVWNEMKKRLGMTDLRFHD  312

Query  290  LRHEAASRLFEKG-LNPMQVAAITGHKTLQMLKRYTHLRAERL  331
            LRHEA SRL E G L   QVAAI+GHK++QMLKRYTHLRAE L
Sbjct  313  LRHEAVSRLVESGQLTDQQVAAISGHKSMQMLKRYTHLRAEDL  355

23) LFML04_0607 in NC_018649


> EF611304|1|G1|148807459|ABR13530.1|Pseudomonas_aeruginosa_PSE9|+|90..1211|-|-|site-specific 
recombinase
Length=373

 Score =  186 bits (688),  Expect = 2e-48, Method: Compositional matrix adjust.
 Identities = 152/369 (42%), Positives = 228/369 (62%), Gaps = 43/369 (11%)

Query  1    MATF-RKRSGSWQVLVRKKGFGQIGRTFDTKSEAETWAKIVESEMVRGVFVTRNEAENTT  59
            MAT+ +  SG+W+ ++RK+G    ++TF TK +A+ WA+  E EMVRGV++ R+ +E+TT
Sbjct  3    MATIVKTPSGTWKAVIRKQGWPTASKTFRTKRDADDWARSTEDEMVRGVYLRRSPSEKTT  62

Query  60   LSEALDRY--EREKNKKGVQQYTSLVNVWKRHPLSKRF----LTTIQGKDIAEYRDNRLE  113
            L  AL+RY  E    KK+  Q +      K  PL +++    L+++ +  IAEYRD+RL 
Sbjct  63   LEKALGRYLEEVTPTKKASTQKAEQT---KAAPLIRHLGKYSLAALSADVIAEYRDKRLK  119

Query  114  ----------------TVGAQTVLHEIGLLSRLYNTAIKEWGMGGLLNPVVQIRKPKMPK  157
                            TV+A+TV  E++LLS L+  AI+EW +G   NPV++IRKP    
Sbjct  120  ETVRTKYKEGSDVTPRTVSANTVRLELALLSNLFTVAIQEWRIGLPQNPVLNIRKPSPGE  179

Query  158  ARDRRLKHGEPERI---CGASKSEILTSIVWFAVETGMRQAEIAGMTWDLVDLKKRTVTL  214
            +RDRRL+ +E  ++     A  + +L  IV++AVETGMR +EI+++ ++ VDLKKR V L
Sbjct  180  GRDRRLNPDEERKLFQAVNAYHNPMLGWIVRIAVETGMRSSEITSLRRHQVDLKKRVVKL  239

Query  215  PDTKNGEKRIVPLSTEALRILSDLPRRLDGKVWGMEPHSISQAFRKAVSRA--RKAYEQE  272
             DTKNGE R VPL+  A + + D    L+  ++ ++ + I   F    ++   R++Y   
Sbjct  240  LDTKNGESRTVPLTQAAAQAFKDA---LENPIRPIDTNLI---FFGEPGKDEKRRPYVFS  293

Query  273  C--EEKGQKPDPSYLADLTFHDLRHEATSRFFEKG-LNPMQVAAITGHKTLQMLKRYTHL  329
               +E  ++ +   ++DL FHDLRHEA SR+ E G L   QVAAI+GHK++QMLKRYTHL
Sbjct  294  KVWNEMKKRLG---MTDLRFHDLRHEAVSRLVESGQLTDQQVAAISGHKSMQMLKRYTHL  350

Query  330  KAEDLAELL  338
            +AEDL   L
Sbjct  351  RAEDLVTAL  359

24) LFML04_1653 in NC_018649


> EF611304|1|G1|148807459|ABR13530.1|Pseudomonas_aeruginosa_PSE9|+|90..1211|-|-|site-specific 
recombinase
Length=373

 Score =  177 bits (657),  Expect = 4e-46, Method: Compositional matrix adjust.
 Identities = 144/334 (44%), Positives = 202/334 (61%), Gaps = 35/334 (10%)

Query  1    MVRGVFVSRKEAENTTLAEALDRYLQEVSSKKKGAYQ--ESRRIENLKSHKLAKRYLASI  58
            MVRGV++ R  +E+TTL  AL+RYL+EV++ KK++ Q  E  +   L  H L+K  LA++
Sbjct  47   MVRGVYLRRSPSEKTTLEKALGRYLEEVTPTKKASTQKAEQTKAAPLIRH-LGKYSLAAL  105

Query  59   QGKDIAEYRDERLK----------------SVSQASVRLELALLSHLFNTAIREWGMNGI  102
             +  IAEYRD RLK                +VS  +VRLELALLS+LF  AI+EW +   
Sbjct  106  SADVIAEYRDKRLKETVRTKYKEGSDVTPRTVSANTVRLELALLSNLFTVAIQEWRIGLP  165

Query  103  LNPVSQIRLPKKAISRDRRLLPGEEEKILGACDEYGGD-LPYVVRLALATGMRRGELASL  161
             NPV +IR P  + +RDRRL P+EE K++ A + Y    L  +VR+A+ TGMR +E++SL
Sbjct  166  QNPVLNIRKPSPGEGRDRRLNPDEERKLFQAVNAYHNPMLGWIVRIAVETGMRSSEITSL  225

Query  162  VWDNIDLKKRTATLPETKNGEKRIVPLSFEAVQILKDL----PRRLDGNVFGFVDSHSIT  217
             ++++DLKKR   L +TKNGE R VPL+  A Q +KD      R +D N++ F ++    
Sbjct  226  RRHQVDLKKRVVKLLDTKNGESRTVPLTQAAAQAFKDALENPIRPIDTNLIFFGEPG---  282

Query  218  TAFIRSVSRARSTYEKECAEKGMKPDPGFLVNLTFHDLRHEATSRFFELG-LDTPFVKKI  276
                +   R    + K   E  MK   G + +L FHDLRHEA SR+ E G L    V  I
Sbjct  283  ----KDEKRRPYVFSKVWNE--MKKRLG-MTDLRFHDLRHEAVSRLVESGQLTDQQVAAI  335

Query  277  TGHKTYQMLDRYTHLRAEDIAEKLDQLNKQKAES  310
            +GHK+ QML RYTHLRAED+   LD++++ +  S
Sbjct  336  SGHKSMQMLKRYTHLRAEDLVTALDNIDQSRQGS  369

25) YpsIP31758_B0022 in NC_009705


> EF611304|1|G1|148807459|ABR13530.1|Pseudomonas_aeruginosa_PSE9|+|90..1211|-|-|site-specific 
recombinase
Length=373

 Score =  177 bits (654),  Expect = 9e-46, Method: Compositional matrix adjust.
 Identities = 127/305 (42%), Positives = 193/305 (64%), Gaps = 36/305 (11%)

Query  2    KTRVKNIPLSKALDIYLDKISFFKKGGMQ--EHYR----VNTIKKYKLSTLLTNNITTVD  55
            ++   +  L KAL+ YL+ ++  KK++ Q  E+ +    +  + KY L++L ++ I    
Sbjct  55   RSPSEKTTLEKALGRYLEEVTPTKKASTQKAEQTKAAPLIRHLGKYSLAALSADVI----  110

Query  56   IAEYRDERLK-TVKPN--------GKTISSNTVRLELALLSHLFKVGIVEWGIA-RENPV  105
             AEYRD RLK TV+ +         +T+S+NTVRLELALLS+LF V+I EW I+  +NPV
Sbjct  111  -AEYRDKRLKETVRTKYKEGSDVTPRTVSANTVRLELALLSNLFTVAIQEWRIGLPQNPV  169

Query  106  LLVRKPKASEGRNRRVQPAEHRRLIRYADEHSTGECASIINLAIETAMRQGEILSLQWEY  165
            L +RKP ++EGR+RR++P E+R+L++  +       + I+ +A+ET+MR +EI SL+++ 
Sbjct  170  LNIRKPSPGEGRDRRLNPDEERKLFQAVNAYHNPMLGWIVRIAVETGMRSSEITSLRRHQ  229

Query  166  VDLRQGVAHLPETKNGTSRDVPLSAKAREILRKC-----SPKSSGSVFSYTSNG------  214
            VDL++ V  L +TKNG SR VPL+  A + ++        P  +  +F +   G      
Sbjct  230  VDLKKRVVKLLDTKNGESRTVPLTQAAAQAFKDALENPIRPIDTNLIF-FGEPGKDEKRR  288

Query  215  ---FKSAWRCIIIKSGIKDLHFHDLRHEGVSRFVESGRLNIMEVAAISGHKSLSMLKRYT  271
               F   W  +  + G+ DL+FHDLRHE+VSR+VESG+L   +VAAISGHKS+ MLKRYT
Sbjct  289  PYVFSKVWNEMKKRLGMTDLRFHDLRHEAVSRLVESGQLTDQQVAAISGHKSMQMLKRYT  348

Query  272  HLKAS  276
            HL+A 
Sbjct  349  HLRAE  353

26) rci in NC_018220


> EF611304|1|G1|148807459|ABR13530.1|Pseudomonas_aeruginosa_PSE9|+|90..1211|-|-|site-specific 
recombinase
Length=373

 Score =  176 bits (650),  Expect = 2e-45, Method: Compositional matrix adjust.
 Identities = 145/359 (41%), Positives = 227/359 (64%), Gaps = 35/359 (9%)

Query  1    MATYEQRPGGAWRAKIRRKGYPSLSATFDTKAEAQRWAAEIEGDMSRARFVDMREAERTT  60
            MAT  + P+G+W+A IR++G P+ S TF TK +A+ WA   E++M R+ ++    +E+TT
Sbjct  3    MATIVKTPSGTWKAVIRKQGWPTASKTFRTKRDADDWARSTEDEMVRGVYLRRSPSEKTT  62

Query  61   LTEALDRYSREVSSTKKGAKQ--EQTRINKWKKHPFAGKGLAALRSSDFASFRDEELKA-  117
            L  AL+RY  EV++TKK++ Q  EQT+     +H ++  +LAAL +  +A +RD  LK  
Sbjct  63   LEKALGRYLEEVTPTKKASTQKAEQTKAAPLIRH-LGKYSLAALSADVIAEYRDKRLKET  121

Query  118  --------------GKSTATVRLDLAIISHLFTVAIKDWGIEGLSNPMMKLRMPKGAKER  163
                            S+ TVRL+LA++S+LFTVAI++W I    NP++++R P  +  R
Sbjct  122  VRTKYKEGSDVTPRTVSANTVRLELALLSNLFTVAIQEWRIGLPQNPVLNIRKPSPGEGR  181

Query  164  DRRPKSFELAGVIEKAGAIHAEMPA-IIQIAVETAMRRSELLGLRRENV--KAKHVLLED  220
            DRR ++ E   +++   A H  M + I++IAVET+MR SE+ +LRR++V  K + V L D
Sbjct  182  DRRLNPDEERKLFQAVNAYHNPMLGWIVRIAVETGMRSSEITSLRRHQVDLKKRVVKLLD  241

Query  221  TKNGTRRLVPLS-TKARALIDGL--PAR-LDGKVFSLAPHSVSQ----Y-FNRACKAAK-  270
            TKNG  R VPL+ + A+A+ D+L  P R +D +++ ++  +  +    Y F++  +  K 
Sbjct  242  TKNGESRTVPLTQAAAQAFKDALENPIRPIDTNLIFFGEPGKDEKRRPYVFSKVWNEMKK  301

Query  271  ---VEDLHFHDLRHEGTSRLFEKG-LSIMEVASITGHKTMSMLKRYTHLCPDALADKLG  325
               + DL+FHDLRHE+ SRL E G L+  +VA+I+GHK+M MLKRYTHL ++ L   L+
Sbjct  302  RLGMTDLRFHDLRHEAVSRLVESGQLTDQQVAAISGHKSMQMLKRYTHLRAEDLVTALD  360

27) Bphyt_7273 in NC_010679


> EF611304|1|G1|148807459|ABR13530.1|Pseudomonas_aeruginosa_PSE9|+|90..1211|-|-|site-specific 
recombinase
Length=373

 Score =  175 bits (648),  Expect = 3e-45, Method: Compositional matrix adjust.
 Identities = 126/301 (42%), Positives = 191/301 (64%), Gaps = 25/301 (8%)

Query  12   SIRQALKKYNERISVNKKGC--KQEKYRASTICKTFLGKVPISQATTVDIANYRDIRLAT  69
            ++ +AL +Y E ++  KK+   K E+ +A+ + +  LGK +++  ++  IA+YRD RL  
Sbjct  62   TLEKALGRYLEEVTPTKKASTQKAEQTKAAPLIRH-LGKYSLAALSADVIAEYRDKRLKE  120

Query  70   ISRT--------TNRPVSPNTVRLELALLSDLFNIARIEWGVAV-DNPVMRVRKPKIPPG  120
              RT        T R VS+NTVRLELALLS+LF +A  EW +++ +NPV+ +RKP    G
Sbjct  121  TVRTKYKEGSDVTPRTVSANTVRLELALLSNLFTVAIQEWRIGLPQNPVLNIRKPSPGEG  180

Query  121  RERRLTWGEERRILRGASQHRNEQFYSVVVLAIETAMRQGEILGLTWENIDLRVRIAHLP  180
            R+RRL  +EER+++++ +  +N  +  +V +A+ET+MR +EI +L ++++DL+ R+  L 
Sbjct  181  RDRRLNPDEERKLFQAVNAYHNPMLGWIVRIAVETGMRSSEITSLRRHQVDLKKRVVKLL  240

Query  181  ATKNGTKRDVPLSLRAV----DALTRLGVKTEGPVFNYTSAG---------FKSAWRTLL  227
             TKNG  R VPL+  A     DAL       +  ++ +  +G         F   W  + 
Sbjct  241  DTKNGESRTVPLTQAAAQAFKDALENPIRPIDTNLIFFGEPGKDEKRRPYVFSKVWNEMK  300

Query  228  QRIGMMDLHFHDLRHEAISRLFELGTLDMMEVATISGHKSMQMLKRYTHLKASNLVAKLD  287
            +R+GM DL+FHDLRHEA+SRL E G L   +VA+ISGHKSMQMLKRYTHL+A +LV+ LD
Sbjct  301  KRLGMTDLRFHDLRHEAVSRLVESGQLTDQQVAAISGHKSMQMLKRYTHLRAEDLVTALD  360

Query  288  G  288
             
Sbjct  361  N  361

28) Tmz1t_2794 in NC_011662


> EF611304|1|G1|148807459|ABR13530.1|Pseudomonas_aeruginosa_PSE9|+|90..1211|-|-|site-specific 
recombinase
Length=373

 Score =  174 bits (645),  Expect = 4e-45, Method: Compositional matrix adjust.
 Identities = 144/359 (41%), Positives = 218/359 (61%), Gaps = 40/359 (11%)

Query  4    IRQRGNRWQCRVTRHGFPPETKSFATKADAETWARSIEVEMDKGVHQNRASVERTTLADI  63
            ++  +  W+  + ++G P  +K+F TK DA+ WARS E EM +GV   R++ E+TTL   
Sbjct  7    VKTPSGTWKAVIRKQGWPTASKTFRTKRDADDWARSTEDEMVRGVYLRRSPSEKTTLEKA  66

Query  64   LLRYAEEVTPCKKGA--KDEAIRLNALRANKLAKHSLANLSAAAVAKFRDERLK------  115
            L RY EEVTP KK++  K E  +  +L    L+K SLA LSA  +A +RD RLK      
Sbjct  67   LGRYLEEVTPTKKASTQKAEQTKAAPL-IRHLGKYSLAALSADVIAEYRDKRLKETVRTK  125

Query  116  ----------TVSAGTVLRDLALISSVLNHARREW--GFPVENAVQAIRKPRQPQGRERV  163
                      TVSA TV  +LAL+S+++  A +EW  G+P +N+V  IRKP   +GR+R 
Sbjct  126  YKEGSDVTPRTVSANTVRLELALLSNLFTVAIQEWRIGLP-QNPVLNIRKPSPGEGRDRR  184

Query  164  LSHDEEARLLAASAPIGRRSPWLQPIIILALETAMRRGELLALRWEHVSLDKRTALLPDT  223
            L+ DEE +L+ A  +   ++P L  I+ +A+ET+MR +E+ +LR+++V L KR   L DT
Sbjct  185  LNPDEERKLFQAVNAY--HNPMLGWIVRIAVETGMRSSEITSLRRHQVDLKKRVVKLLDT  242

Query  224  KNGTRRLVPLSPRAI----DTLKHMPRAIDGRVFPISEPALHLR---FKLA------CDR  270
            KNG  R VPL+  A     D+L +  R+ID  ++ ++EP+ + +   + ++        R
Sbjct  243  KNGESRTVPLTQAAAQAFKDALENPIRPIDTNLIFFGEPGKDEKRRPYVFSKVWNEMKKR  302

Query  271  AGIDGLHFHDLRHTATTRLAE--KLTNLAELSAVTGHKSLQMLKRYYHPNAEALAEKLA  327
             G+ +L+FHDLRH A +RL E  +LT+  +++A++GHKS+QMLKRY H  AE L   L 
Sbjct  303  LGMTDLRFHDLRHEAVSRLVESGQLTD-QQVAAISGHKSMQMLKRYTHLRAEDLVTALD  360

29) LFE_0797 in NC_017094


> EF611304|1|G1|148807459|ABR13530.1|Pseudomonas_aeruginosa_PSE9|+|90..1211|-|-|site-specific 
recombinase
Length=373

 Score =  170 bits (627),  Expect = 9e-44, Method: Compositional matrix adjust.
 Identities = 138/325 (43%), Positives = 195/325 (60%), Gaps = 36/325 (11%)

Query  1    MDRGAFFSRKEAENTTLSEALDRYLTEITEKKKGSYQESRQIENLK-IHSLGKRFLATIQ  59
            M RG ++ R  +E+TTL  AL+RYL E+T  KK+S Q + Q      I+ LGK  LA++ 
Sbjct  47   MVRGVYLRRSPSEKTTLEKALGRYLEEVTPTKKASTQKAEQTKAAPLIRHLGKYSLAALS  106

Query  60   GRDIAEYRDERLA----------------TVSPATVRRELVILSHLFTVASKEWGMSGLG  103
            +  IAEYRD RL                 TVS+ TVR EL +LS+LFTVA +EW ++   
Sbjct  107  ADVIAEYRDKRLKETVRTKYKEGSDVTPRTVSANTVRLELALLSNLFTVAIQEWRIGLPQ  166

Query  104  NPVQAIRLPYGRGVSRDRRLNPGEETALLDACEKYGGD-LPHIVLPALETAMRRGEIDGM  162
            NPV  IR P + G +RDRRLNP+EE  L++A + Y    L  IV  A+ET+MR +EI ++
Sbjct  167  NPVLNIRKP-SPGEGRDRRLNPDEERKLFQAVNAYHNPMLGWIVRIAVETGMRSSEITSL  225

Query  163  TWDDVDLKKRTVTLPGTKTGEVRIVSLSSEAIR----ILSSIPRRIDGRVFGYTDPH---  215
             +++VDLKKR V L +TK GE R V+L+  A +     L +  R ID  ++ + +P    
Sbjct  226  RRHQVDLKKRVVKLLDTKNGESRTVPLTQAAAQAFKDALENPIRPIDTNLIFFGEPGKDE  285

Query  216  -------SITWVFIHACKKAGINGLTFHDLRHEATSRLFELG-LSAEKVKKITGHKTYQM  267
                   S  W   +  K+ G+ +L FHDLRHEA SRL E G L+ ++V  I+GHK+ QM
Sbjct  286  KRRPYVFSKVWN--EMKKRLGMTDLRFHDLRHEAVSRLVESGQLTDQQVAAISGHKSMQM  343

Query  268  LSRYTHLKTEDIAEEIDKLKKERSG  292
            L RYTHL++ED+   +D++ + R G
Sbjct  344  LKRYTHLRAEDLVTALDNIDQSRQG  368

30) PputW619_3971 in NC_010501


> EF611304|1|G1|148807459|ABR13530.1|Pseudomonas_aeruginosa_PSE9|+|90..1211|-|-|site-specific 
recombinase
Length=373

 Score =  166 bits (612),  Expect = 2e-42, Method: Compositional matrix adjust.
 Identities = 143/351 (41%), Positives = 211/351 (61%), Gaps = 34/351 (9%)

Query  23   GDAWRAQIRRKGYPTLSATFDTKAEAQRWAAEIEGDMSRARFVDMREAESTTLDEALDRY  82
            +++W+A IR++G PT S TF TK +A+ WA   E++M R+ ++    +E TTL+ AL+RY
Sbjct  11   SGTWKAVIRKQGWPTASKTFRTKRDADDWARSTEDEMVRGVYLRRSPSEKTTLEKALGRY  70

Query  83   LSEVTSTKKGA--KQEQVRIKKWKEHKLASKGLAAIRSSDMAAYRDAELKE---------  131
            L EVT+TKK++  K EQ +      H L+  +LAA+ +  +A YRD  LKE         
Sbjct  71   LEEVTPTKKASTQKAEQTKAAPLIRH-LGKYSLAALSADVIAEYRDKRLKETVRTKYKEG  129

Query  132  ------GKSTATVRLNLAVISHLFTVATKEWGIEGLTNPCRAIRMPKGSKERDRRPTPAE  185
                    S+ TVRL+LA++S+LFTVA +EW I    NP   IR P  +  RDRR  P E
Sbjct  130  SDVTPRTVSANTVRLELALLSNLFTVAIQEWRIGLPQNPVLNIRKPSPGEGRDRRLNPDE  189

Query  186  LTALYKAAGQ-MNAQLPVFIELAVETAMRRSELLMLRRDHV--RGKVAYLEDTKNGERRA  242
               L++A     N+ L  ++ +AVET+MR SE+  LRR++V  + +V  L DTKNGE R+
Sbjct  190  ERKLFQAVNAYHNPMLGWIVRIAVETGMRSSEITSLRRHQVDLKKRVVKLLDTKNGESRT  249

Query  243  VPLS-SRAIALLEGLPTPI----GGGRYFNLALNTIS--NY-FPRACAAA----GIEGLR  290
            VPL+ + A A+ ++L  PI        +F  + +      Y F++         G+ +LR
Sbjct  250  VPLTQAAAQAFKDALENPIRPIDTNLIFFGEPGKDEKRRPYVFSKVWNEMKKRLGMTDLR  309

Query  291  LHDLRHEATSRFFERG-FTMMEVASITGHKTLAMLKRYTHLSPHDLAEKLG  340
            +HDLRHEA SR+ E G +T  +VA+I+GHK++ MLKRYTHL ++DL   L+
Sbjct  310  FHDLRHEAVSRLVESGQLTDQQVAAISGHKSMQMLKRYTHLRAEDLVTALD  360

31) B479_20185 in NC_019905


> EF611304|1|G1|148807459|ABR13530.1|Pseudomonas_aeruginosa_PSE9|+|90..1211|-|-|site-specific 
recombinase
Length=373

 Score =  164 bits (606),  Expect = 5e-42, Method: Compositional matrix adjust.
 Identities = 145/358 (41%), Positives = 212/358 (60%), Gaps = 48/358 (13%)

Query  8    GDAWRAQIRRKGYPTLSATFDTKAEAQRWAAEIEGDMSRARFVDMREAESTTLAEALDRY  67
            +++W+A IR++G PT S TF TK +A+ WA   E++M R+ ++    +E TTL  AL+RY
Sbjct  11   SGTWKAVIRKQGWPTASKTFRTKRDADDWARSTEDEMVRGVYLRRSPSEKTTLEKALGRY  70

Query  68   LSEVTSTKKGAKQ--EQVRIKKWKEHKLASKALAAIRSSDMATYRDAELKE---------  116
            L EVT+TKK++ Q  EQ +      H L+  +LAA+ +  +A YRD  LKE         
Sbjct  71   LEEVTPTKKASTQKAEQTKAAPLIRH-LGKYSLAALSADVIAEYRDKRLKETVRTKYKEG  129

Query  117  ------GKSTATVRLNLAVISHLYTVATKEWGIEGLTNPCRAIRMPKGSKERDRRPTPAE  170
                    S+ TVRL+LA++S+L+TVA +EW I    NP   IR P  +  RDRR  P E
Sbjct  130  SDVTPRTVSANTVRLELALLSNLFTVAIQEWRIGLPQNPVLNIRKPSPGEGRDRRLNPDE  189

Query  171  LAALYKAAGQ-MNAQLPVFIELAVETAMRRSELLMLRRDQV--RGKVAYLEDTKNGERRA  227
               L++A     N+ L  ++ +AVET+MR SE+  LRR+QV  + +V  L DTKNGE R+
Sbjct  190  ERKLFQAVNAYHNPMLGWIVRIAVETGMRSSEITSLRRHQVDLKKRVVKLLDTKNGESRT  249

Query  228  VPLS-SRAIALLDGLPTPIGGGRYFNLALNTISNYFP--------RACVAA---------  269
            VPL+ + A A+ D+L  PI        +++T   +F         R+ V +         
Sbjct  250  VPLTQAAAQAFKDALENPIR-------PIDTNLIFFGEPGKDEKRRPYVFSKVWNEMKKR  302

Query  270  -GIEGLRLHDLRHEATSRFFERG-FTMMEVASITGHKTLAMLKRYTHLSPQDLAEKLG  325
             G+ +LR+HDLRHEA SR+ E G +T  +VA+I+GHK++ MLKRYTHL ++DL   L+
Sbjct  303  LGMTDLRFHDLRHEAVSRLVESGQLTDQQVAAISGHKSMQMLKRYTHLRAEDLVTALD  360

32) Msip34_2844 in NC_012970


> EF611304|1|G1|148807459|ABR13530.1|Pseudomonas_aeruginosa_PSE9|+|90..1211|-|-|site-specific 
recombinase
Length=373

 Score =  152 bits (561),  Expect = 2e-38, Method: Compositional matrix adjust.
 Identities = 120/298 (41%), Positives = 178/298 (60%), Gaps = 27/298 (9%)

Query  9    ALVKYKSSVSILKKGYEQ--EKFRIEQICRSPLGSLVVRNATSVDIASFRDDRLSQV---  63
            AL +Y   V+  KK+  Q  E+ +   + R  LG   +   ++  IA +RD RL +    
Sbjct  66   ALGRYLEEVTPTKKASTQKAEQTKAAPLIR-HLGKYSLAALSADVIAEYRDKRLKETVRT  124

Query  64   -----NQKTKKPIAASTVRLELSLLSSFFDICRIEW--GLCESNPVTNVRKPKAPPGRDR  116
                 ++ T + ++A+TVRLEL+LLS++F +   EW  GL + NPV N+RKP +  GRDR
Sbjct  125  KYKEGSDVTPRTVSANTVRLELALLSNLFTVAIQEWRIGLPQ-NPVLNIRKPSPGEGRDR  183

Query  117  RLTPREDRQILRYAHSHSNQEFYSIVILALETAMRQSEIIKLCWEHLDLKSRIAHLPDTK  176
            RL P E+R++++  ++  N  +  IV +A+ET+MR SEI  L ++++DLK R+  L DTK
Sbjct  184  RLNPDEERKLFQAVNAYHNPMLGWIVRIAVETGMRSSEITSLRRHQVDLKKRVVKLLDTK  243

Query  177  NGSKRDVPLSAKA----RDALIRLGVKSKGNVFTYTSSG---------IKSTWRFMLGKL  223
            NG  R VPL+  A    +DAL         N++ +  +G         +   W  M  +L
Sbjct  244  NGESRTVPLTQAAAQAFKDALENPIRPIDTNLIFFGEPGKDEKRRPYVFSKVWNEMKKRL  303

Query  224  GIEDLHFHDMRHEAISRFFELGSLDMMEIAAISGHKSLSMLKRYTHLKAHKLVRKLDG  281
            G+ DL+FHD+RHEA+SR+ E G L   ++AAISGHKS+ MLKRYTHL+A+ LV  LD 
Sbjct  304  GMTDLRFHDLRHEAVSRLVESGQLTDQQVAAISGHKSMQMLKRYTHLRAEDLVTALDN  361

33) rci in NC_003198


> EF611304|1|G1|148807459|ABR13530.1|Pseudomonas_aeruginosa_PSE9|+|90..1211|-|-|site-specific 
recombinase
Length=373

 Score =  146 bits (539),  Expect = 1e-36, Method: Compositional matrix adjust.
 Identities = 130/306 (43%), Positives = 188/306 (62%), Gaps = 32/306 (10%)

Query  9    KMSLSKALDKYYATVSVHKRGHQQEFYRVRVIQ--RHPLAEKMMDEITTVDIASYRDDRL  66
            K +L KAL++Y   V+  K++  Q   + +     RH L+   +  +++  IA YRD RL
Sbjct  60   KTTLEKALGRYLEEVTPTKKASTQKAEQTKAAPLIRH-LGKYSLAALSADVIAEYRDKRL  118

Query  67   SQ-VNTR-------TGRCISGNTVRlelallsslynlasVEWGTC-RTNPVEMVRKPKIS  117
             + V T+       T R +S+NTVRLELALLS+L+ +A  EW      NPV  +RKP  +
Sbjct  119  KETVRTKYKEGSDVTPRTVSANTVRLELALLSNLFTVAIQEWRIGLPQNPVLNIRKPSPG  178

Query  118  GGRDRRLTSQEERRLSRYFQE----QNPALHAIFHLAIETAMRQGEILSLRWEHIDLQHG  173
             GRDRRL ++EER+L   FQ     +NP L  I ++A+ET+MR +EI SLR++++DL+  
Sbjct  179  EGRDRRLNPDEERKL---FQAVNAYHNPMLGWIVRIAVETGMRSSEITSLRRHQVDLKKR  235

Query  174  VAHLPMTKNGSSRDVPLSRKA----RHLLQGMTVALSGNVFHYSSSG---------FKSA  220
            V  L  TKNG SR VPL++ A    ++ L+    ++  N++ ++ +G         F   
Sbjct  236  VVKLLDTKNGESRTVPLTQAAAQAFKDALENPIRPIDTNLIFFGEPGKDEKRRPYVFSKV  295

Query  221  WRVALQRLNIVDLHFHDLRHEAISRLFELGTLNVMEVAAISGHRSLNMLKRYTHLRAYQL  280
            W    +RL + DL+FHDLRHEA+SRL E G L   +VAAISGH+S++MLKRYTHLRA +L
Sbjct  296  WNEMKKRLGMTDLRFHDLRHEAVSRLVESGQLTDQQVAAISGHKSMQMLKRYTHLRAEDL  355

Query  281  VSKLDA  286
            V+ LD 
Sbjct  356  VTALDN  361

34) STBHUCCB_45020 in NC_016832


> EF611304|1|G1|148807459|ABR13530.1|Pseudomonas_aeruginosa_PSE9|+|90..1211|-|-|site-specific 
recombinase
Length=373

 Score =  146 bits (539),  Expect = 1e-36, Method: Compositional matrix adjust.
 Identities = 130/306 (43%), Positives = 188/306 (62%), Gaps = 32/306 (10%)

Query  9    KMSLSKALDKYYATVSVHKRGHQQEFYRVRVIQ--RHPLAEKMMDEITTVDIASYRDDRL  66
            K +L KAL++Y   V+  K++  Q   + +     RH L+   +  +++  IA YRD RL
Sbjct  60   KTTLEKALGRYLEEVTPTKKASTQKAEQTKAAPLIRH-LGKYSLAALSADVIAEYRDKRL  118

Query  67   SQ-VNTR-------TGRCISGNTVRlelallsslynlasVEWGTC-RTNPVEMVRKPKIS  117
             + V T+       T R +S+NTVRLELALLS+L+ +A  EW      NPV  +RKP  +
Sbjct  119  KETVRTKYKEGSDVTPRTVSANTVRLELALLSNLFTVAIQEWRIGLPQNPVLNIRKPSPG  178

Query  118  GGRDRRLTSQEERRLSRYFQE----QNPALHAIFHLAIETAMRQGEILSLRWEHIDLQHG  173
             GRDRRL ++EER+L   FQ     +NP L  I ++A+ET+MR +EI SLR++++DL+  
Sbjct  179  EGRDRRLNPDEERKL---FQAVNAYHNPMLGWIVRIAVETGMRSSEITSLRRHQVDLKKR  235

Query  174  VAHLPMTKNGSSRDVPLSRKA----RHLLQGMTVALSGNVFHYSSSG---------FKSA  220
            V  L  TKNG SR VPL++ A    ++ L+    ++  N++ ++ +G         F   
Sbjct  236  VVKLLDTKNGESRTVPLTQAAAQAFKDALENPIRPIDTNLIFFGEPGKDEKRRPYVFSKV  295

Query  221  WRVALQRLNIVDLHFHDLRHEAISRLFELGTLNVMEVAAISGHRSLNMLKRYTHLRAYQL  280
            W    +RL + DL+FHDLRHEA+SRL E G L   +VAAISGH+S++MLKRYTHLRA +L
Sbjct  296  WNEMKKRLGMTDLRFHDLRHEAVSRLVESGQLTDQQVAAISGHKSMQMLKRYTHLRAEDL  355

Query  281  VSKLDA  286
            V+ LD 
Sbjct  356  VTALDN  361

35) TY21A_21645 in NC_021176


> EF611304|1|G1|148807459|ABR13530.1|Pseudomonas_aeruginosa_PSE9|+|90..1211|-|-|site-specific 
recombinase
Length=373

 Score =  146 bits (539),  Expect = 1e-36, Method: Compositional matrix adjust.
 Identities = 130/306 (43%), Positives = 188/306 (62%), Gaps = 32/306 (10%)

Query  9    KMSLSKALDKYYATVSVHKRGHQQEFYRVRVIQ--RHPLAEKMMDEITTVDIASYRDDRL  66
            K +L KAL++Y   V+  K++  Q   + +     RH L+   +  +++  IA YRD RL
Sbjct  60   KTTLEKALGRYLEEVTPTKKASTQKAEQTKAAPLIRH-LGKYSLAALSADVIAEYRDKRL  118

Query  67   SQ-VNTR-------TGRCISGNTVRlelallsslynlasVEWGTC-RTNPVEMVRKPKIS  117
             + V T+       T R +S+NTVRLELALLS+L+ +A  EW      NPV  +RKP  +
Sbjct  119  KETVRTKYKEGSDVTPRTVSANTVRLELALLSNLFTVAIQEWRIGLPQNPVLNIRKPSPG  178

Query  118  GGRDRRLTSQEERRLSRYFQE----QNPALHAIFHLAIETAMRQGEILSLRWEHIDLQHG  173
             GRDRRL ++EER+L   FQ     +NP L  I ++A+ET+MR +EI SLR++++DL+  
Sbjct  179  EGRDRRLNPDEERKL---FQAVNAYHNPMLGWIVRIAVETGMRSSEITSLRRHQVDLKKR  235

Query  174  VAHLPMTKNGSSRDVPLSRKA----RHLLQGMTVALSGNVFHYSSSG---------FKSA  220
            V  L  TKNG SR VPL++ A    ++ L+    ++  N++ ++ +G         F   
Sbjct  236  VVKLLDTKNGESRTVPLTQAAAQAFKDALENPIRPIDTNLIFFGEPGKDEKRRPYVFSKV  295

Query  221  WRVALQRLNIVDLHFHDLRHEAISRLFELGTLNVMEVAAISGHRSLNMLKRYTHLRAYQL  280
            W    +RL + DL+FHDLRHEA+SRL E G L   +VAAISGH+S++MLKRYTHLRA +L
Sbjct  296  WNEMKKRLGMTDLRFHDLRHEAVSRLVESGQLTDQQVAAISGHKSMQMLKRYTHLRAEDL  355

Query  281  VSKLDA  286
            V+ LD 
Sbjct  356  VTALDN  361

36) rci in NC_004631


> EF611304|1|G1|148807459|ABR13530.1|Pseudomonas_aeruginosa_PSE9|+|90..1211|-|-|site-specific 
recombinase
Length=373

 Score =  146 bits (539),  Expect = 1e-36, Method: Compositional matrix adjust.
 Identities = 130/306 (43%), Positives = 188/306 (62%), Gaps = 32/306 (10%)

Query  9    KMSLSKALDKYYATVSVHKRGHQQEFYRVRVIQ--RHPLAEKMMDEITTVDIASYRDDRL  66
            K +L KAL++Y   V+  K++  Q   + +     RH L+   +  +++  IA YRD RL
Sbjct  60   KTTLEKALGRYLEEVTPTKKASTQKAEQTKAAPLIRH-LGKYSLAALSADVIAEYRDKRL  118

Query  67   SQ-VNTR-------TGRCISGNTVRlelallsslynlasVEWGTC-RTNPVEMVRKPKIS  117
             + V T+       T R +S+NTVRLELALLS+L+ +A  EW      NPV  +RKP  +
Sbjct  119  KETVRTKYKEGSDVTPRTVSANTVRLELALLSNLFTVAIQEWRIGLPQNPVLNIRKPSPG  178

Query  118  GGRDRRLTSQEERRLSRYFQE----QNPALHAIFHLAIETAMRQGEILSLRWEHIDLQHG  173
             GRDRRL ++EER+L   FQ     +NP L  I ++A+ET+MR +EI SLR++++DL+  
Sbjct  179  EGRDRRLNPDEERKL---FQAVNAYHNPMLGWIVRIAVETGMRSSEITSLRRHQVDLKKR  235

Query  174  VAHLPMTKNGSSRDVPLSRKA----RHLLQGMTVALSGNVFHYSSSG---------FKSA  220
            V  L  TKNG SR VPL++ A    ++ L+    ++  N++ ++ +G         F   
Sbjct  236  VVKLLDTKNGESRTVPLTQAAAQAFKDALENPIRPIDTNLIFFGEPGKDEKRRPYVFSKV  295

Query  221  WRVALQRLNIVDLHFHDLRHEAISRLFELGTLNVMEVAAISGHRSLNMLKRYTHLRAYQL  280
            W    +RL + DL+FHDLRHEA+SRL E G L   +VAAISGH+S++MLKRYTHLRA +L
Sbjct  296  WNEMKKRLGMTDLRFHDLRHEAVSRLVESGQLTDQQVAAISGHKSMQMLKRYTHLRAEDL  355

Query  281  VSKLDA  286
            V+ LD 
Sbjct  356  VTALDN  361

37) Pecwa_0639 in NC_013421


> EF611304|1|G1|148807459|ABR13530.1|Pseudomonas_aeruginosa_PSE9|+|90..1211|-|-|site-specific 
recombinase
Length=373

 Score =  136 bits (500),  Expect = 1e-33, Method: Compositional matrix adjust.
 Identities = 127/309 (42%), Positives = 187/309 (61%), Gaps = 35/309 (11%)

Query  7    KMLLSQALDKYFATVSRYKRGQLQEFYRINVIKRSPLANRHMD-----EISSVDIAGYRD  61
            K  L +AL++Y+  V+  K++  Q   + +  K +PL  RH++      +S+  IA YRD
Sbjct  60   KTTLEKALGRYLEEVTPTKKASTQ---KAEQTKAAPLI-RHLGKYSLAALSADVIAEYRD  115

Query  62   DRL-----------AQINPRTKKSISGNTVRlelallsalynlaKVEWGTC-TSNPVEHV  109
             RL           +++ PRT   +S+NTVRLELALLS L+ +A  EW      NPV ++
Sbjct  116  KRLKETVRTKYKEGSDVTPRT---VSANTVRLELALLSNLFTVAIQEWRIGLPQNPVLNI  172

Query  110  RKPAVSSGRVRRLTSQEERGLTRYFRGKKPELLA-IFRLAIETAMRQGEILSLRWENIDL  168
            RKP+ + GR RRL ++EER L +   +    +L+ I R+A+ET+MR +EI SLR++++DL
Sbjct  173  RKPSPGEGRDRRLNPDEERKLFQAVNAYHNPMLGWIVRIAVETGMRSSEITSLRRHQVDL  232

Query  169  RLGIAHLPLTKNGSARDVPLSSKARLVLKE-IGELGRDDTGNVFTYTSSG---------F  218
            +  +  L  TKNG +R VPL+  A   +K+ + +  R    N++ +  +G         F
Sbjct  233  KKRVVKLLDTKNGESRTVPLTQAAAQAFKDALENPIRPIDTNLIFFGEPGKDEKRRPYVF  292

Query  219  KSAWRIALQSLSINDLHFHDLRHEAISRLFELGTLNVMEVAAISGHKSMNMLKRYTHLRA  278
               W    + L++ DL+FHDLRHEA+SRL E G L   +VAAISGHKSM+MLKRYTHLRA
Sbjct  293  SKVWNEMKKRLGMTDLRFHDLRHEAVSRLVESGQLTDQQVAAISGHKSMQMLKRYTHLRA  352

Query  279  THLVSKLDA  287
             +LV+ LD 
Sbjct  353  EDLVTALDN  361

38) SPAB_05367 in NC_010102


> EF611304|1|G1|148807459|ABR13530.1|Pseudomonas_aeruginosa_PSE9|+|90..1211|-|-|site-specific 
recombinase
Length=373

 Score =  135 bits (494),  Expect = 4e-33, Method: Compositional matrix adjust.
 Identities = 122/301 (41%), Positives = 186/301 (62%), Gaps = 36/301 (11%)

Query  2    ALDKYYGCASVQKRGHLQEFYRINVIKRSALAR---RY-MHEITSVDIAEYRDQRLSEV-  56
            AL++Y    +  K++  Q   + +  K ++L R   +Y +  +++  IAEYRD+RL E  
Sbjct  66   ALGRYLEEVTPTKKASTQ---KAEQTKAAPLIRHLGKYSLAALSADVIAEYRDKRLKETV  122

Query  57   -------SGKTGRTNSPASVRlelallsalynlaRIEWGTC-THNPVEHVRKPPASKGRT  108
                   S+ T RT S+ +VRLELALLS L+ +A  EW     +NPV ++RKP+++ GR 
Sbjct  123  RTKYKEGSDVTPRTVSANTVRLELALLSNLFTVAIQEWRIGLPQNPVLNIRKPSPGEGRD  182

Query  109  RRLTSQEERKIGRALAK-RNIELAAIFHLALETAMRQGEILSLRWENIDLHIGIAHLPLT  167
            RRL ++EERK+ +A+   +N  L+ I ++A+ET+MR +EI SLR++++DL   +  L  T
Sbjct  183  RRLNPDEERKLFQAVNAYHNPMLGWIVRIAVETGMRSSEITSLRRHQVDLKKRVVKLLDT  242

Query  168  KNGSVRDVPLSFKARKVLREYSGPLSGPV---------FSYTSNG-------FKSAWREV  211
            KNG  R VPL+   +   + + ++L  P+         F+  +++       F   W E+
Sbjct  243  KNGESRTVPLT---QAAAQAFKDALENPIRPIDTNLIFFGEPGKDEKRRPYVFSKVWNEM  299

Query  212  IQALGIVDLHFHDLRHEAISRLFELGTLNVMEIAAISGHKSLTMLKRYTHLRATQLVSKL  271
             + LG+ DL+FHDLRHEA+SRL E G L   ++AAISGHKS+ MLKRYTHLRA +LV+ L
Sbjct  300  KKRLGMTDLRFHDLRHEAVSRLVESGQLTDQQVAAISGHKSMQMLKRYTHLRAEDLVTAL  359

Query  272  D  272
            D
Sbjct  360  D  360

39) ECL_00426 in NC_014121


> EF611304|1|G1|148807459|ABR13530.1|Pseudomonas_aeruginosa_PSE9|+|90..1211|-|-|site-specific 
recombinase
Length=373

 Score =  123 bits (449),  Expect = 2e-29, Method: Compositional matrix adjust.
 Identities = 131/311 (43%), Positives = 188/311 (61%), Gaps = 32/311 (10%)

Query  4    RNRIKKMPLAKALDKYFSAVSVHKRGHLQEFYRINVIKRSTLSLK----CMDEITSVDIA  59
            R+   K  L KAL++Y+  V+  K++  Q   + +  K + L        +  +++  IA
Sbjct  55   RSPSEKTTLEKALGRYLEEVTPTKKASTQ---KAEQTKAAPLIRHLGKYSLAALSADVIA  111

Query  60   DYRDMRLNTV--------SDRTGRTVSPNTVRlelallsalynlaRIEWGTC-SHNPVEH  110
            +YRD RL+          SD T RTVS+NTVRLELALLS L+ +A  EW    ++NPV +
Sbjct  112  EYRDKRLKETVRTKYKEGSDVTPRTVSANTVRLELALLSNLFTVAIQEWRIGLPQNPVLN  171

Query  111  VRKPAASPGrtrrltsteerrIARALRQKNPQLLA-IFHLALETAMRQGEILSLRWEYVD  169
            +RKP+++ GR RRL + EER++ +A+   +  +L+ I ++A+ET+MR +EI SLR++ VD
Sbjct  172  IRKPSPGEGRDRRLNPDEERKLFQAVNAYHNPMLGWIVRIAVETGMRSSEITSLRRHQVD  231

Query  170  LHLGIAHLPLTKNGTARDVPLSWKARQVLKE-FAGPV----TGPVFDYTSNG--------  216
            L   +  L  TKNG +R VPL+  A Q +K+ +  P+    T  +F +   G        
Sbjct  232  LKKRVVKLLDTKNGESRTVPLTQAAAQAFKDALENPIRPIDTNLIF-FGEPGKDEKRRPY  290

Query  217  -FKSAWRVLLAELEIHDLHFHDLRHEAVSRLFELGTLNVMEVAAISGHKSMNMLKRYTHL  275
             F   W  +   L + DL+FHDLRHEAVSRL E G L   +VAAISGHKSM+MLKRYTHL
Sbjct  291  VFSKVWNEMKKRLGMTDLRFHDLRHEAVSRLVESGQLTDQQVAAISGHKSMQMLKRYTHL  350

Query  276  RASQLVSKLDA  286
            RA +LV+ LD 
Sbjct  351  RAEDLVTALDN  361

40) Dd703_3048 in NC_012880


> EF611304|1|G1|148807459|ABR13530.1|Pseudomonas_aeruginosa_PSE9|+|90..1211|-|-|site-specific 
recombinase
Length=373

 Score =  117 bits (427),  Expect = 9e-28, Method: Compositional matrix adjust.
 Identities = 132/303 (44%), Positives = 183/303 (61%), Gaps = 29/303 (9%)

Query  10   LSKALDKYFSTVSRHKRGQLQEFYRINVIKRSRLANR----NMDEISSIDIAEYRDTRLS  65
            L KAL++Y+  V+  K++  Q   + +  K + L  +    ++  +S+  IAEYRD RL 
Sbjct  63   LEKALGRYLEEVTPTKKASTQ---KAEQTKAAPLIRHLGKYSLAALSADVIAEYRDKRLK  119

Query  66   EF--------NARTQKPISANTVRlelallsalynlaKVEWGTC-SINPVENIRKPTVSS  116
            E         +  T + +SANTVRLELALLS L+ +A  EW    + NPV NIRKP+ + 
Sbjct  120  ETVRTKYKEGSDVTPRTVSANTVRLELALLSNLFTVAIQEWRIGLPQNPVLNIRKPSPGE  179

Query  117  GrtrrlttheerrltrYFKDKNPELLA-IFHIALETGMRQGEILSLRWEYTDLRLGVAHL  175
            GR RRL  +EER+L +  +  +  +L+ I +IA+ETGMR +EI SLR++  DL+  V  L
Sbjct  180  GRDRRLNPDEERKLFQAVNAYHNPMLGWIVRIAVETGMRSSEITSLRRHQVDLKKRVVKL  239

Query  176  PLTKNGTSRDVPLSSKARQILSGLGERPHH--ENGYIFSYTSSG---------FKSAWRV  224
              TKNG SR VPL+  A Q + +  E P +  +   IF +  +G         F   W  
Sbjct  240  LDTKNGESRTVPLTQAAAQAFKDALENPIRPIDTNLIF-FGEPGKDEKRRPYVFSKVWNE  298

Query  225  ALKALAIDDLHFHDLRHEAISRFFELGTLNVMEVAAISGHKSMNMLKRYTHLRATHLVSK  284
              K L++ DL+FHDLRHEA+SR+ E G L   +VAAISGHKSM+MLKRYTHLRA +LV+ 
Sbjct  299  MKKRLGMTDLRFHDLRHEAVSRLVESGQLTDQQVAAISGHKSMQMLKRYTHLRAEDLVTA  358

Query  285  LDA  287
            LD 
Sbjct  359  LDN  361

41) PC1_0847 in NC_012917


> EF611304|1|G1|148807459|ABR13530.1|Pseudomonas_aeruginosa_PSE9|+|90..1211|-|-|site-specific 
recombinase
Length=373

 Score =  116 bits (423),  Expect = 2e-27, Method: Compositional matrix adjust.
 Identities = 132/306 (44%), Positives = 184/306 (61%), Gaps = 29/306 (9%)

Query  7    KILLSKALDKYFSTVSRHKRGQLQEFYRINVIKRSRLANR----NMDEISSIDIAEYRDN  62
            K  L KAL++Y+  V+  K++  Q   + +  K + L  +    ++  +S+  IAEYRD+
Sbjct  60   KTTLEKALGRYLEEVTPTKKASTQ---KAEQTKAAPLIRHLGKYSLAALSADVIAEYRDK  116

Query  63   RLSEF--------NARTQKPISANTVRlelallsalynlaKVEWGTC-SINPVENVRKPT  113
            RL E         +  T + +SANTVRLELALLS L+ +A  EW    + NPV N+RKP+
Sbjct  117  RLKETVRTKYKEGSDVTPRTVSANTVRLELALLSNLFTVAIQEWRIGLPQNPVLNIRKPS  176

Query  114  VSSGrtrrlttqeerqltrYFKDKNPELLA-IFQIALETGMRQGEILSLRWEYTDLRLGV  172
             + GR RRL  +EER+L +  +  +  +L+ I +IA+ETGMR +EI SLR++  DL+  V
Sbjct  177  PGEGRDRRLNPDEERKLFQAVNAYHNPMLGWIVRIAVETGMRSSEITSLRRHQVDLKKRV  236

Query  173  AHLPLTKNGTSRDVPLSSKARQILYGLGERPHH--ENGYIFSYTSSG---------FKSA  221
              L  TKNG SR VPL+  A Q + +  E P +  +   IF +  +G         F   
Sbjct  237  VKLLDTKNGESRTVPLTQAAAQAFKDALENPIRPIDTNLIF-FGEPGKDEKRRPYVFSKV  295

Query  222  WRVALKALAIDDLHFHDLRHEAISRFFELGTLNVMEVAAISGHKSMNMLKRYTHLRAAHL  281
            W    K L++ DL+FHDLRHEA+SR+ E G L   +VAAISGHKSM+MLKRYTHLRA +L
Sbjct  296  WNEMKKRLGMTDLRFHDLRHEAVSRLVESGQLTDQQVAAISGHKSMQMLKRYTHLRAEDL  355

Query  282  VNKLDA  287
            V  LD 
Sbjct  356  VTALDN  361