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Homologs of i-inlL gene of AJ251981

protein-level

Hit (GenBank Accn)

Product

Source Genome

Eval.

Ident.(%)

1) i-inlL
( YP_004854951.1 )

putative internalin L

NC_016011
(Listeria ivanovii PAM 55)

3e-114

100

2) LIV_1691
( YP_004855441.1 )

putative soluble interanlin

NC_016011
(Listeria ivanovii PAM 55)

4e-70

3) i-inlH
( YP_004854956.1 )

putative internalin H

NC_016011
(Listeria ivanovii PAM 55)

2e-68

4) i-inlF
( YP_004854959.1 )

putative internalin F

NC_016011
(Listeria ivanovii PAM 55)

4e-42

5) LIV_0073
( YP_004853908.1 )

putative soluble internalin

NC_016011
(Listeria ivanovii PAM 55)

2e-41

6) i-inlE
( YP_004854960.1 )

putative internalin E

NC_016011
(Listeria ivanovii PAM 55)

4e-37

7) i-inlI
( YP_004854955.1 )

putative internalin I

NC_016011
(Listeria ivanovii PAM 55)

1e-32

• Sequence Alignments

1) i-inlL in NC_016011


> AJ251981|1|G1|18073252|CAC80808.1|Listeria_ivanovii_ATCC_19119|+|211..996|i-inlL|-|i-InlL 
protein
Length=261

 Score =  403 bits (1518),  Expect = 3e-114, Method: Compositional matrix adjust.
 Identities = 261/261 (100%), Positives = 261/261 (100%), Gaps = 0/261 (0%)

Query  1    MKRNNCLKKICTvlliiviailvNTNLETKAQAISIPYAMPINQIFPDYNLADVVKQHLG  60
            MKRNNCLKKICTVLLIIVIAILVNTNLETKAQAISIPYAMPINQIFPDYNLADVVKQHLG
Sbjct  1    MKRNNCLKKICTVLLIIVIAILVNTNLETKAQAISIPYAMPINQIFPDYNLADVVKQHLG  60

Query  61   KQSVTDVVSQRDLDRVQNFNGNCCNITSMEGVQYFRHLKQLSMSYNQISDVSVLTPLRQL  120
            KQSVTDVVSQRDLDRVQNFNGNCCNITSMEGVQYFRHLKQLSMSYNQISDVSVLTPLRQL
Sbjct  61   KQSVTDVVSQRDLDRVQNFNGNCCNITSMEGVQYFRHLKQLSMSYNQISDVSVLTPLRQL  120

Query  121  EILILEHNKLEDIDVLVNIPTLEGLYVGNNALRDLWALEAMGNLKYVDASEQKCINKPVV  180
            EILILEHNKLEDIDVLVNIPTLEGLYVGNNALRDLWALEAMGNLKYVDASEQKCINKPVV
Sbjct  121  EILILEHNKLEDIDVLVNIPTLEGLYVGNNALRDLWALEAMGNLKYVDASEQKCINKPVV  180

Query  181  YQPNLVITNTIKDMIGKPIVPNFISDNGAYVNTDVTWDLPNPHSITEVSYSFEEVQHIGK  240
            YQPNLVITNTIKDMIGKPIVPNFISDNGAYVNTDVTWDLPNPHSITEVSYSFEEVQHIGK
Sbjct  181  YQPNLVITNTIKDMIGKPIVPNFISDNGAYVNTDVTWDLPNPHSITEVSYSFEEVQHIGK  240

Query  241  EKVLFSGVVIQPIKPQTPANS  261
            EKVLFSGVVIQPIKPQTPANS
Sbjct  241  EKVLFSGVVIQPIKPQTPANS  261

2) LIV_1691 in NC_016011


> AJ251981|1|G1|18073252|CAC80808.1|Listeria_ivanovii_ATCC_19119|+|211..996|i-inlL|-|i-InlL 
protein
Length=261

 Score =  257 bits (961),  Expect = 4e-70, Method: Compositional matrix adjust.
 Identities = 157/260 (61%), Positives = 204/260 (79%), Gaps = 2/260 (0%)

Query  1    MNKKEWLKNIIGVMLITAILMCVNTSLESKVQAANIPHPMPIDQIFPDPGLAKVVKQALG  60
            M++++ LK+I  V+LI  I + VNT+LE+K QA +IP +MPI+QIFPD  LA VVKQ LG
Sbjct  1    MKRNNCLKKICTVLLIIVIAILVNTNLETKAQAISIPYAMPINQIFPDYNLADVVKQHLG  60

Query  61   KQSVTDVVSQGELDGVQELIGGACNIKSIEGLQHFSNLKELLLPYNHISDISALASLSQL  120
            KQSVTDVVSQ +LD VQ++ G  CNI S+EG+Q F +LK+L ++YN+ISD+S L++L QL
Sbjct  61   KQSVTDVVSQRDLDRVQNFNGNCCNITSMEGVQYFRHLKQLSMSYNQISDVSVLTPLRQL  120

Query  121  EVISLNHNKLKDIDSLVNLTKLRCLYVSNNQLRDLWALEGLKNLESVDAEEQTCTNNPVV  180
            E++ L+HNKL DID LVN+  L  LYV+NN LRDLWALE++ NL  VDA EQ C N+PVV
Sbjct  121  EILILEHNKLEDIDVLVNIPTLEGLYVGNNALRDLWALEAMGNLKYVDASEQKCINKPVV  180

Query  181  YKPKVVIPNTIKNMSGKSVTPNFISDNGEYINTDVIWELPT--YTTEVSYRFKDILNIGK  238
            Y+P++VI NTIK+M GK++ PNFISDNG Y+NTDV W+LP     TEVSY F ++ +IGK
Sbjct  181  YQPNLVITNTIKDMIGKPIVPNFISDNGAYVNTDVTWDLPNPHSITEVSYSFEEVQHIGK  240

Query  239  DYVLFSGVVIQPLELATSAN  258
            + VLFSGVVIQP+   T+AN
Sbjct  241  EKVLFSGVVIQPIKPQTPAN  260

3) i-inlH in NC_016011


> AJ251981|1|G1|18073252|CAC80808.1|Listeria_ivanovii_ATCC_19119|+|211..996|i-inlL|-|i-InlL 
protein
Length=261

 Score =  251 bits (939),  Expect = 2e-68, Method: Compositional matrix adjust.
 Identities = 145/260 (56%), Positives = 201/260 (78%), Gaps = 2/260 (0%)

Query  1    MKKKDWLKSVVVAILVLMVGFCANIYFGTKVYAAGILHSIPINEIFQDYGLANAVKRQLG  60
            MK+++ LK +   +L++++++  N  + TK  A +I  ++PIN+IF DY LA+ VK++LG
Sbjct  1    MKRNNCLKKICTVLLIIVIAILVNTNLETKAQAISIPYAMPINQIFPDYNLADVVKQHLG  60

Query  61   KQSVTEVVSQRELDEIQKLNGNGCNIKSIKGVEYLTNLTKLYLSYNHISDISALASLSQL  120
            KQSVT+VVSQR+LD +Q++NGN CNI S+ GV+Y+ +L +L +SYN+ISD+S L++L QL
Sbjct  61   KQSVTDVVSQRDLDRVQNFNGNCCNITSMEGVQYFRHLKQLSMSYNQISDVSVLTPLRQL  120

Query  121  EVLSLKQNKLKDINSLANLTKLRCLYVSNNQLRDLWALEGLKNLEYVDAEEQTCTNNPVV  180
            E+L L +NKL DI+ L N+  L  LYV+NN LRDLWALE++ NL YVDA EQ C N+PVV
Sbjct  121  EILILEHNKLEDIDVLVNIPTLEGLYVGNNALRDLWALEAMGNLKYVDASEQKCINKPVV  180

Query  181  YKPKVVIPNTIKDMSGKSVTPNFISDNGEYINTDVIWELPT--YTTEVSYRFKDILNIGK  238
            Y+P++VI NTIKDM GK++ PNFISDNG Y+NTDV W+LP     TEVSY F ++ +IGK
Sbjct  181  YQPNLVITNTIKDMIGKPIVPNFISDNGAYVNTDVTWDLPNPHSITEVSYSFEEVQHIGK  240

Query  239  DYVLFSGVVIQPVELEAPAA  258
            + VLFSGVVIQP+  ++PA 
Sbjct  241  EKVLFSGVVIQPIKPQTPAN  260


 Score = 34.3 bits (110),  Expect = 0.008, Method: Compositional matrix adjust.
 Identities = 14/42 (34%), Positives = 33/42 (79%), Gaps = 0/42 (0%)

Query  263  SINQTLPAASLTEALKKGLRKKAVTDISPKSELDKANEFHDE  304
            +INQ +P  +L++ +K+ L K++VTD+ ++ +LD+ ++F+++
Sbjct  41   PINQIFPDYNLADVVKQHLGKQSVTDVVSQRDLDRVQNFNGN  82

4) i-inlF in NC_016011


> AJ251981|1|G1|18073252|CAC80808.1|Listeria_ivanovii_ATCC_19119|+|211..996|i-inlL|-|i-InlL 
protein
Length=261

 Score =  164 bits (607),  Expect = 4e-42, Method: Compositional matrix adjust.
 Identities = 114/277 (42%), Positives = 171/277 (62%), Gaps = 45/277 (16%)

Query  24   NMSLETKAQAANIPHPLPINRIFPDPDLAERVKETLKKSNVTDVVSQRELDEVQIFNGNG  83
            N +LETKAQA +IP ++PIN+IFPD +LA+ VK+ L K +VTDVVSQR+LD VQ FNGN 
Sbjct  24   NTNLETKAQAISIPYAMPINQIFPDYNLADVVKQHLGKQSVTDVVSQRDLDRVQNFNGNC  83

Query  84   RTIISIDGLQYFTNLKELYLSRNHIRDLTPLKDLTNLAILCLDKNRLENLNGIPSNKLVR  143
              I S++G+QYF +LK+L +S N+I D++ L  L +L IL L+ N+LE+           
Sbjct  84   CNITSMEGVQYFRHLKQLSMSYNQISDVSVLTPLRQLEILILEHNKLED-----------  132

Query  144  LSLEDNELTQVDALANLTQLETLFISKNQLKNIDALANLTNLKTLDLNRNELEDLSPLAR  203
                      +D L N+  LE L++++N L+                      DL +L  
Sbjct  133  ----------IDVLVNIPTLEGLYVGNNALR----------------------DLWALEA  160

Query  204  LENLTSLDLANQKCVKEALVYKPKLVIPNTIKGPDKVLITPSYISDNGSYTNGQLKWNLP  263
            + NL  +D ++QKC++ ++VY+P+LVI NTIK+     I P++ISDNG+Y N ++ W+LP
Sbjct  161  MGNLKYVDASEQKCINKPVVYQPNLVITNTIKDMIGKPIVPNFISDNGAYVNTDVTWDLP  220

Query  264  V--CKEKVCYTFAQLVRVGKTEVVFNGVVIQPLYPKK  298
                   V Y+F ++ ++GK  V+F+GVVIQP+ P+ 
Sbjct  221  NPHSITEVSYSFEEVQHIGKEKVLFSGVVIQPIKPQT  257

5) LIV_0073 in NC_016011


> AJ251981|1|G1|18073252|CAC80808.1|Listeria_ivanovii_ATCC_19119|+|211..996|i-inlL|-|i-InlL 
protein
Length=261

 Score =  162 bits (598),  Expect = 2e-41, Method: Compositional matrix adjust.
 Identities = 121/283 (43%), Positives = 171/283 (61%), Gaps = 45/283 (15%)

Query  13   MLVTFIVTCVNTSLETKVQAASIPHPMSIKQIFPDPGLANEVKRSLGKESVASFVSQEEL  72
            +L+  I   VNT+LETK QA SIP +M+I+QIFPD  LA+ VK+ LGK+SV+  VSQ +L
Sbjct  14   LLIIVIAILVNTNLETKAQAISIPYAMPINQIFPDYNLADVVKQHLGKQSVTDVVSQRDL  73

Query  73   DEVQKFNGDNCNIQSLEGMQYFTNLKELFLSHNQISDLSPLKDLTkleelslnrnklkkl  132
            D VQ+FNG+ CNI S+EG+QYF +LK+L +S NQISD+S L  L +              
Sbjct  74   DRVQNFNGNCCNITSMEGVQYFRHLKQLSMSYNQISDVSVLTPLRQ--------------  119

Query  133  nGIPSACLERLFVDDNELRDTDSLVHLENLEILSIRKNKLRSIGALCFLPKLEVLDLHGN  192
                   LE L++++N L D D LV++                      P LE L +  N
Sbjct  120  -------LEILILEHNKLEDIDVLVNI----------------------PTLEGLYVGNN  150

Query  193  ELRNVSEVRGLKKINWIDLTGQKCVNKPVKYQRELFITNTVKEPDGTLIAPNFISNNGIY  252
             LR++  + ++ +++ +D + QKC+NKPV YQ +L ITNT+K+  G  I PNFIS+NG Y
Sbjct  151  ALRDLWALEAMGNLKYVDASEQKCINKPVVYQPNLVITNTIKDMIGKPIVPNFISDNGAY  210

Query  253  VDGCVIWDLPV--YMNEVSYTFSELISVGETEAMFDGTVVQPL  293
            V+  V WDLP    + EVSY+F E+  +G    +F G V+QP+
Sbjct  211  VNTDVTWDLPNPHSITEVSYSFEEVQHIGKEKVLFSGVVIQPI  253

6) i-inlE in NC_016011


> AJ251981|1|G1|18073252|CAC80808.1|Listeria_ivanovii_ATCC_19119|+|211..996|i-inlL|-|i-InlL 
protein
Length=261

 Score =  147 bits (541),  Expect = 4e-37, Method: Compositional matrix adjust.
 Identities = 106/253 (42%), Positives = 158/253 (63%), Gaps = 24/253 (9%)

Query  1    MRKSNWLKSVVVAMLVLIVGFCINIGSGTKVHAANILHPMPINQIFPDPDLAKVVKRTLG  60
            M+++N LK +   +L++++++ +N    TK +A +I  +MPINQIFPD +LA VVK+ LG
Sbjct  1    MKRNNCLKKICTVLLIIVIAILVNTNLETKAQAISIPYAMPINQIFPDYNLADVVKQHLG  60

Query  61   KQSVTDVVSQKELDSVQGLNGNESNIKSLEGLQHFNKLEVLFLASNQIKDITPLKNLTNL  120
            KQSVTDVVSQ++LD VQ +NGN  NI S+EG+Q F  L  L ++ NQI D++ L  L +L
Sbjct  61   KQSVTDVVSQRDLDRVQNFNGNCCNITSMEGVQYFRHLKQLSMSYNQISDVSVLTPLRQL  120

Query  121  KVLDLKVNQISD---------LTPLY----GLKNLTSLDVV----Y-----QKIVETPVT  158
             +L L  N++ D         L  LY    +L++L +L+ +    Y     QK ++ PV 
Sbjct  121  EILILEHNKLEDIDVLVNIPTLEGLYVGNNALRDLWALEAMGNLKYVDASEQKCINKPVV  180

Query  159  YEPDLVIPVTVKKPDGSLVTPKCITDNGAYIYDDIIWNLPAYKK--EVSYKFGERIQVGK  216
            Y+P+LVI  T+K   G  + P+ I+DNGAY+  D+ W+LP      EVSY F E  ++GK
Sbjct  181  YQPNLVITNTIKDMIGKPIVPNFISDNGAYVNTDVTWDLPNPHSITEVSYSFEEVQHIGK  240

Query  217  VSTTFTGMVKQPL  229
                F+G+V QP+
Sbjct  241  EKVLFSGVVIQPI  253

7) i-inlI in NC_016011


> AJ251981|1|G1|18073252|CAC80808.1|Listeria_ivanovii_ATCC_19119|+|211..996|i-inlL|-|i-InlL 
protein
Length=261

 Score =  132 bits (483),  Expect = 1e-32, Method: Compositional matrix adjust.
 Identities = 96/237 (41%), Positives = 151/237 (64%), Gaps = 24/237 (10%)

Query  12   ISVGLCINTGSGTKVQAAKISHPMPINKIFPDPDLANAVKQNLGKKSVTDCVSQRALDKV  71
            I +++ +NT   TK QA  I+ +MPIN+IFPD +LA+ VKQ+LGK+SVTD VSQR LD+V
Sbjct  17   IVIAILVNTNLETKAQAISIPYAMPINQIFPDYNLADVVKQHLGKQSVTDVVSQRDLDRV  76

Query  72   RKFNGIQANIESLEGIQFFTKLEELFLSSNQIKDISPLKDLTELRVLDL---KMNEI---  125
            ++FNG   NI S+EG+Q+F  L +L +S NQI D+S L  L +L +L L   K+++I   
Sbjct  77   QNFNGNCCNITSMEGVQYFRHLKQLSMSYNQISDVSVLTPLRQLEILILEHNKLEDIDVL  136

Query  126  ----------------RDLTPLRGLSKITWLDVTYQKIVEDSVPFESDLFIPITVQKIDG  169
                            RDL +L +++++  +D + QK ++ +V ++++L I  T++ + G
Sbjct  137  VNIPTLEGLYVGNNALRDLWALEAMGNLKYVDASEQKCINKPVVYQPNLVITNTIKDMIG  196

Query  170  SLITPKCITDNGVYMCDGITWNLPGYK--KEVSYKFWEYINVGKTRTTFTGMVKQPL  224
              I P+ I+DNG Y+  ++TW+LP      EVSY F E  ++GK +  F+G+V QP+
Sbjct  197  KPIVPNFISDNGAYVNTDVTWDLPNPHSITEVSYSFEEVQHIGKEKVLFSGVVIQPI  253