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Homologs of avrPphD1 gene of AF469470

protein-level

Hit (GenBank Accn)

Product

Source Genome

Eval.

Ident.(%)

1) hopD1
( YP_272137.1 )

type III effector HopD1

NC_007274
(Pseudomonas syringae 1448A)

0.0

2) hopD1
( NP_790715.1 )

type III effector HopD1

NC_004578
(Pseudomonas syringae DC3000)

0.0

3) xopB
( YP_362312.1 )

outer protein B

NC_007508
(Xanthomonas campestris 85-10)

0.0

• Sequence Alignments

1) hopD1 in NC_007274


> AF469470|1|G1|28194199|AAO33448.1|Pseudomonas_syringae_pv._tomato_DC3000|-|1..1550|avrPphD1|-|AvrPphD1
Length=517

 Score =  761 bits (2881),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 465/522 (90%), Positives = 494/522 (95%), Gaps = 5/522 (0%)

Query  162  MSSVLSQDAVDSSSLETPLVSSPDHSRPPSQPKPVHIGSVRRDSGSLVSDNPVVQALLSF  221
            MS VLSQDAVD+S+LE+PL+SS  HSRPPSQP PVHIGSVRRDSGSLVSDNPVV+ALL+F
Sbjct  1    MSRVLSQDAVDGSGLESPLLSSRAHSRPPSQPEPVHIGSVRRDSGSLVSDNPVVHALLAF  60

Query  222  VQADQAFPPQAASIAGVQLEMRSRRDIEQALEELKGAFTVEKAQLMSGGSSSERVDEDVN  281
             QADQAFPPQAASI GVQLEMR+ RDIEQAL  +K+AFTVEKAQLMS  +SSER DED+N
Sbjct  61   AQADQAFPPQAASIDGVQLEMRPTRDIEQALKKFKDAFTVEKAQLMSVTNSSERADEDIN  120

Query  282  ADIHIPLLLKAIERGAGAFGPGALIEIADGGQISAKAFLASCAPTITSNDDVLSEFINQK  341
            ADIHIPLLLKAIE+GA+AFGP A I     GQ SAKAFLASCAPTITSNDDVLS FINQK
Sbjct  121  ADIHIPLLLKAIEQGAAAFGPNASI-----GQNSAKAFLASCAPTITSNDDVLSAFINQK  175

Query  342  LKGDDDLQVRLGAQELLHVATKKEFQLGGLAGSIGVSSILGSAWELGASELLKNAIFGKN  401
            LKGDDDL+VRLGAQELLHVATKKEFQLGGLAGSIGVSSILGSAWELGASELLKNAIFGKN
Sbjct  176  LKGDDDLKVRLGAQELLHVATKKEFQLGGLAGSIGVSSILGSAWELGASELLKNAIFGKN  235

Query  402  FSPSQYALQLAGIDSVPPFIIEAMDSFCVLVIIKGMKGELWSMKDLLPKALKAGAISSAM  461
            FSPSQYALQLAGIDSVPP++IE+MD+ CVL IIKGMKGE WSM DLLPKALKAGAISS +
Sbjct  236  FSPSQYALQLAGIDSVPPLMIESMDTMCVLAIIKGMKGEEWSMSDLLPKALKAGAISSVV  295

Query  462  SFPNNVLQYAGFKSRVADLAANSITTEAAIFGAASGIPPEVKESEELMRAGLFQSMKDGV  521
            SFPNNVLQYAGFKSRV+DLAANS+TTEAAIFGAASGIPPEVKESEELMRAGLFQSMKDGV
Sbjct  296  SFPNNVLQYAGFKSRVGDLAANSVTTEAAIFGAASGIPPEVKESEELMRAGLFQSMKDGV  355

Query  522  MAHPGEGMDTKETIERMTRHALDIAPGESTAVKSMGLAAIVGMIPLIASSKATGLVSEQI  581
            MAHPGEG+DTKETIERMTRHALDIAPGESTAVKSMGLA+IVGMIPLIAS+KATGL+SEQ+
Sbjct  356  MAHPGEGVDTKETIERMTRHALDIAPGESTAVKSMGLASIVGMIPLIASNKATGLLSEQV  415

Query  582  LRIFRNAVFNPIEAIALNALALGGRVNVPGLFDSDNAKHARVAQTILARASQHMEAGDRE  641
            LRIFR+AVFNPIEAIALNALALGGRVNVPGLFDSDNAKHARV QTILARASQ+MEAGDR+
Sbjct  416  LRIFRSAVFNPIEAIALNALALGGRVNVPGLFDSDNAKHARVVQTILARASQQMEAGDRN  475

Query  642  ISAEELHQMLAPRSEFLRHVGSAIVNGMNASFEAIPALVRKL  683
            ISAEELHQMLAPRSEFLRHVGSAIVNGMNASFEAIPAL RKL
Sbjct  476  ISAEELHQMLAPRSEFLRHVGSAIVNGMNASFEAIPALARKL  517

2) hopD1 in NC_004578


> AF469470|1|G1|28194199|AAO33448.1|Pseudomonas_syringae_pv._tomato_DC3000|-|1..1550|avrPphD1|-|AvrPphD1
Length=517

 Score =  752 bits (2844),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 488/517 (95%), Positives = 503/517 (98%), Gaps = 0/517 (0%)

Query  162  MSRVLSQDAVDsssletpllsspDHSRPPSQPKPVHIGSVRRDSGSLVSDNPVVQALLSf  221
            MSRVLSQDAVD+S+LE+PLLSS  HSRPPSQP PVHIGSVRRDSGSLVSDNPVV+ALL+F
Sbjct  1    MSRVLSQDAVDGSGLESPLLSSRAHSRPPSQPEPVHIGSVRRDSGSLVSDNPVVHALLAF  60

Query  222  aqadqafppqaaSIAGVQLEMRPRRDIEKALEEFKGAFTVVKAQLMSGANSSERVDEDVN  281
            AQADQAFPPQAASI GVQLEMRP RDIE+AL  FK+AFTV KAQLMS +NSSER DED+N
Sbjct  61   AQADQAFPPQAASIDGVQLEMRPTRDIEQALKKFKDAFTVEKAQLMSVTNSSERADEDIN  120

Query  282  ADIHIPLLLKAIERGAAAFGPNASIGQNSAKAFLASCAPKITSNDDVLSEFINQKLKGDD  341
            ADIHIPLLLKAIE+GAAAFGPNASIGQNSAKAFLASCAP ITSNDDVLS FINQKLKGDD
Sbjct  121  ADIHIPLLLKAIEQGAAAFGPNASIGQNSAKAFLASCAPTITSNDDVLSAFINQKLKGDD  180

Query  342  DLQVRLGAQELLHVATKKEFQLGGLAGSIGVSSILGSAWELGASELLKNAIFGKNFSPSQ  401
            DL+VRLGAQELLHVATKKEFQLGGLAGSIGVSSILGSAWELGASELLKNAIFGKNFSPSQ
Sbjct  181  DLKVRLGAQELLHVATKKEFQLGGLAGSIGVSSILGSAWELGASELLKNAIFGKNFSPSQ  240

Query  402  YALQLAGIDSVPPLIIESMDTMCVLAIIKGMKGEEWSMSDLLPKALKAGAISSVVSFPNN  461
            YALQLAGIDSVPPL+IESMDTMCVLAIIKGMKGEEWSMSDLLPKALKAGAISSVVSFPNN
Sbjct  241  YALQLAGIDSVPPLMIESMDTMCVLAIIKGMKGEEWSMSDLLPKALKAGAISSVVSFPNN  300

Query  462  VLQYAGFKSRVGDLAANSVTTEAAIFGAASGIPPEVKESEELMRAGLFQSMKDGVMAHSG  521
            VLQYAGFKSRVGDLAANSVTTEAAIFGAASGIPPEVKESEELMRAGLFQSMKDGVMAH+G
Sbjct  301  VLQYAGFKSRVGDLAANSVTTEAAIFGAASGIPPEVKESEELMRAGLFQSMKDGVMAHPG  360

Query  522  EGVDTKKTIERMTRHALDIAPGESTAVKSMGLASIVGMIPLIASNKATGLLSEQVLRIFR  581
            EGVDTK TIERMTRHALDIAPGESTAVKSMGLASIVGMIPLIASNKATGLLSEQVLRIFR
Sbjct  361  EGVDTKETIERMTRHALDIAPGESTAVKSMGLASIVGMIPLIASNKATGLLSEQVLRIFR  420

Query  582  SAVFNPIEAIALNALALGGRVNVPGLFDSDNAKHARVVQTILARASQHMEAGDRDISAEE  641
            SAVFNPIEAIALNALALGGRVNVPGLFDSDNAKHARVVQTILARASQ+MEAGDR+ISAEE
Sbjct  421  SAVFNPIEAIALNALALGGRVNVPGLFDSDNAKHARVVQTILARASQQMEAGDRNISAEE  480

Query  642  LHQMLAPRSEFLRHVGSAIVNGMNASFEAIPALVRKL  678
            LHQMLAPRSEFLRHVGSAIVNGMNASFEAIPAL RKL
Sbjct  481  LHQMLAPRSEFLRHVGSAIVNGMNASFEAIPALARKL  517

3) xopB in NC_007508


> AF469470|1|G1|28194199|AAO33448.1|Pseudomonas_syringae_pv._tomato_DC3000|-|1..1550|avrPphD1|-|AvrPphD1
Length=517

 Score =  650 bits (2458),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 402/512 (79%), Positives = 463/512 (91%), Gaps = 10/512 (1%)

Query  78   DNSGLETPLLISLT-----GLQKPRHMGLVRRESSRLVSADPVVHALLSFAQVDQPFPPQ  132
            D SGLE+PLL S +     +   P H+G VRR+S+ LVS +PVVHALL+FAQ DQ+FPPQ
Sbjct  11   DGSGLESPLLSSRAHSRPPSQPEPVHIGSVRRDSGSLVSDNPVVHALLAFAQADQAFPPQ  70

Query  133  VASTDGVRLELVSRRDPEKALEEFKDAFTVETAQLMPAANSSERTAEQIDADIHIPLLLK  192
             AS DGV+LE+ + RD E+AL  FKDAFTVE AQLM+ +NSSER+ E+I+ADIHIPLLLK
Sbjct  71   AASIDGVQLEMRPTRDIEQALKKFKDAFTVEKAQLMSVTNSSERADEDINADIHIPLLLK  130

Query  193  AIERGSAAFGPSALIEMADGSQISAKAFLASCAPDVMSNDDVLSAFINQKLKGDEDLQVR  252
            AIE+G+AAFGP+A I     +Q SAKAFLASCAP + SNDDVLSAFINQKLKGD+DL+VR
Sbjct  131  AIEQGAAAFGPNASI-----GQNSAKAFLASCAPTITSNDDVLSAFINQKLKGDDDLKVR  185

Query  253  LGAQELLYVATKKEFQLGGLAgsigvssvigsvWELGASELLKKAIFGKNFSPSQYALQL  312
            LGAQELL VATKKEFQLGGLAGSIGVSS++GS WELGASELLK+AIFGKNFSPSQYALQL
Sbjct  186  LGAQELLHVATKKEFQLGGLAGSIGVSSILGSAWELGASELLKNAIFGKNFSPSQYALQL  245

Query  313  AGIDSVPPLIIETMDTMCVLAIIKGMKGEDWSLRDLLPKAMKAGAISSIVSFPNNVLQYT  372
            AGIDSVPPL+IE+MDTMCVLAIIKGMKGE+WS+ DLLPKA+KAGAISS+VSFPNNVLQY+
Sbjct  246  AGIDSVPPLMIESMDTMCVLAIIKGMKGEEWSMSDLLPKALKAGAISSVVSFPNNVLQYA  305

Query  373  GFKSGLGDLAANMTTTEAAIFGAASGIPPEVKESEETMRAGLFQSIKDGVMACPSEKMGP  432
            GFKS +GDLAAN  TTEAAIFGAASGIPPEVKESEE MRAGLFQS+KDGVMA P+E ++ 
Sbjct  306  GFKSRVGDLAANSVTTEAAIFGAASGIPPEVKESEELMRAGLFQSMKDGVMAHPGEGVDT  365

Query  433  EEAIEQMARHALDVAPGESTAVKSMGLAAIVGMIPLIAGSKATGLLSEKVLRIFRSTVFN  492
             E+IE+M+RHALD+APGESTAVKSMGLA+IVGMIPLIA++KATGLLSE+VLRIFRS+VFN
Sbjct  366  KETIERMTRHALDIAPGESTAVKSMGLASIVGMIPLIASNKATGLLSEQVLRIFRSAVFN  425

Query  493  PIEAIALNALALGGRIHVPGLFESDNAKHARVVQTILARASEQMESEAREITAEELHHIL  552
            PIEAIALNALALGGR++VPGLF+SDNAKHARVVQTILARAS+QME+  R+I+AEELH++L
Sbjct  426  PIEAIALNALALGGRVNVPGLFDSDNAKHARVVQTILARASQQMEAGDRNISAEELHQML  485

Query  553  APRSEFLRHVGTAIVKGMNASFEVLPALARKL  584
            APRSEFLRHVG+AIV+GMNASFE +PALARKL
Sbjct  486  APRSEFLRHVGSAIVNGMNASFEAIPALARKL  517