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PAthogenisity Island DataBase (PAI DB)

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Homologs of tcpA gene of AF452580

protein-level

Hit (GenBank Accn)

Product

Source Genome

Eval.

Ident.(%)

• Sequence Alignments

1) tcpA in NC_012582


> AF452580|1|G1|18071800|AAL58339.1|Vibrio_cholerae_366-96|+|1..605|tcpA|-|TcpA
Length=201

 Score =  256 bits (957),  Expect = 5e-70, Method: Compositional matrix adjust.
 Identities = 161/201 (81%), Positives = 185/201 (93%), Gaps = 4/201 (1%)

Query  26   MTLLEVIIVLGIMGVVSAGVVTLAQRAIDSQNMTKAAQSLNSIQVALTQTYRGLGNYPAT  85
            MTLLEVIIVLGIMGVVSAGVVTLAQRAIDSQNMTKAAQ+LNS+QVALTQTYRGLGNYP T
Sbjct  1    MTLLEVIIVLGIMGVVSAGVVTLAQRAIDSQNMTKAAQNLNSVQVALTQTYRGLGNYPET  60

Query  86   ADATAASKLTSGLVSLGKISSDEAKNPFIGTNMNIFSFPRNAAANKAFAISVDGLTQAQC  145
            AD TAA+KLT+GLVSLGKIS+DEAKNPF G++MNIFSF RN+AANKAFAISVDGLTQAQC
Sbjct  61   ADDTAAAKLTAGLVSLGKISPDEAKNPFTGADMNIFSFDRNGAANKAFAISVDGLTQAQC  120

Query  146  KTLITSVGDMFPYIAIKaggavaladlgdFENSAAAAETGVGVIKSIAPASKNLDLTNIT  205
            KTL+TSVGDMFPY+ +K ++ VA ADL+DFE +AA A+TGVGVIKSI+P++KNL+LT+IT
Sbjct  121  KTLVTSVGDMFPYVLVKNAAKVAKADLSDFETTAAVADTGVGVIKSISPTGKNLNLTDIT  180

Query  206  HVEKLC----KGTAPFGVAFG  222
            HVEKLC     G++ F+VAFG
Sbjct  181  HVEKLCAAAAGGATTFSVAFG  201

2) tcpA in NC_009457


> AF452580|1|G1|18071800|AAL58339.1|Vibrio_cholerae_366-96|+|1..605|tcpA|-|TcpA
Length=201

 Score =  256 bits (957),  Expect = 5e-70, Method: Compositional matrix adjust.
 Identities = 161/201 (81%), Positives = 185/201 (93%), Gaps = 4/201 (1%)

Query  26   MTLLEVIIVLGIMGVVSAGVVTLAQRAIDSQNMTKAAQSLNSIQVALTQTYRGLGNYPAT  85
            MTLLEVIIVLGIMGVVSAGVVTLAQRAIDSQNMTKAAQ+LNS+QVALTQTYRGLGNYP T
Sbjct  1    MTLLEVIIVLGIMGVVSAGVVTLAQRAIDSQNMTKAAQNLNSVQVALTQTYRGLGNYPET  60

Query  86   ADATAASKLTSGLVSLGKISSDEAKNPFIGTNMNIFSFPRNAAANKAFAISVDGLTQAQC  145
            AD TAA+KLT+GLVSLGKIS+DEAKNPF G++MNIFSF RN+AANKAFAISVDGLTQAQC
Sbjct  61   ADDTAAAKLTAGLVSLGKISPDEAKNPFTGADMNIFSFDRNGAANKAFAISVDGLTQAQC  120

Query  146  KTLITSVGDMFPYIAIKaggavaladlgdFENSAAAAETGVGVIKSIAPASKNLDLTNIT  205
            KTL+TSVGDMFPY+ +K ++ VA ADL+DFE +AA A+TGVGVIKSI+P++KNL+LT+IT
Sbjct  121  KTLVTSVGDMFPYVLVKNAAKVAKADLSDFETTAAVADTGVGVIKSISPTGKNLNLTDIT  180

Query  206  HVEKLC----KGTAPFGVAFG  222
            HVEKLC     G++ F+VAFG
Sbjct  181  HVEKLCAAAAGGATTFSVAFG  201

3) O3Y_03850 in NC_016944


> AF452580|1|G1|18071800|AAL58339.1|Vibrio_cholerae_366-96|+|1..605|tcpA|-|TcpA
Length=201

 Score =  241 bits (901),  Expect = 1e-65, Method: Compositional matrix adjust.
 Identities = 153/201 (77%), Positives = 178/201 (89%), Gaps = 4/201 (1%)

Query  26   MTLLEVIIVLGIMGVVSAGVVTLAQRAIDSQNMTKAAQNLNSVQIAMTQTYRSLGNYPat  85
            MTLLEVIIVLGIMGVVSAGVVTLAQRAIDSQNMTKAAQNLNSVQ+A+TQTYR+LGNYP T
Sbjct  1    MTLLEVIIVLGIMGVVSAGVVTLAQRAIDSQNMTKAAQNLNSVQVALTQTYRGLGNYPET  60

Query  86   ananaatQLANGLVSLGKVSADEAKNPFTGTAMGIFSFPRNSAANKAFAITVGGLTQAQC  145
            A+  AA++L+ GLVSLGK+S+DEAKNPFTG+ M IFSF RN+AANKAFAI+V+GLTQAQC
Sbjct  61   ADDTAAAKLTAGLVSLGKISPDEAKNPFTGADMNIFSFDRNGAANKAFAISVDGLTQAQC  120

Query  146  KTLVTSVGDMFPFINVKEGAFAAVADLGDFETSVADAATGAGVIKSIAPGSANLNLTNIT  205
            KTLVTSVGDMFP++ VK++A  A ADL+DFET+ A A TG GVIKSI+P + NLNLT+IT
Sbjct  121  KTLVTSVGDMFPYVLVKNAAKVAKADLSDFETTAAVADTGVGVIKSISPTGKNLNLTDIT  180

Query  206  HVEKLC----TGTAPFTVAFG  222
            HVEKLC     G++ F+VAFG
Sbjct  181  HVEKLCAAAAGGATTFSVAFG  201

4) tcpA in NC_012578


> AF452580|1|G1|18071800|AAL58339.1|Vibrio_cholerae_366-96|+|1..605|tcpA|-|TcpA
Length=201

 Score =  241 bits (901),  Expect = 1e-65, Method: Compositional matrix adjust.
 Identities = 153/201 (77%), Positives = 178/201 (89%), Gaps = 4/201 (1%)

Query  26   MTLLEVIIVLGIMGVVSAGVVTLAQRAIDSQNMTKAAQNLNSVQIAMTQTYRSLGNYPat  85
            MTLLEVIIVLGIMGVVSAGVVTLAQRAIDSQNMTKAAQNLNSVQ+A+TQTYR+LGNYP T
Sbjct  1    MTLLEVIIVLGIMGVVSAGVVTLAQRAIDSQNMTKAAQNLNSVQVALTQTYRGLGNYPET  60

Query  86   ananaatQLANGLVSLGKVSADEAKNPFTGTAMGIFSFPRNSAANKAFAITVGGLTQAQC  145
            A+  AA++L+ GLVSLGK+S+DEAKNPFTG+ M IFSF RN+AANKAFAI+V+GLTQAQC
Sbjct  61   ADDTAAAKLTAGLVSLGKISPDEAKNPFTGADMNIFSFDRNGAANKAFAISVDGLTQAQC  120

Query  146  KTLVTSVGDMFPFINVKEGAFAAVADLGDFETSVADAATGAGVIKSIAPGSANLNLTNIT  205
            KTLVTSVGDMFP++ VK++A  A ADL+DFET+ A A TG GVIKSI+P + NLNLT+IT
Sbjct  121  KTLVTSVGDMFPYVLVKNAAKVAKADLSDFETTAAVADTGVGVIKSISPTGKNLNLTDIT  180

Query  206  HVEKLC----TGTAPFTVAFG  222
            HVEKLC     G++ F+VAFG
Sbjct  181  HVEKLCAAAAGGATTFSVAFG  201

5) VCD_003500 in NC_012668


> AF452580|1|G1|18071800|AAL58339.1|Vibrio_cholerae_366-96|+|1..605|tcpA|-|TcpA
Length=201

 Score =  241 bits (901),  Expect = 1e-65, Method: Compositional matrix adjust.
 Identities = 153/201 (77%), Positives = 178/201 (89%), Gaps = 4/201 (1%)

Query  26   MTLLEVIIVLGIMGVVSAGVVTLAQRAIDSQNMTKAAQNLNSVQIAMTQTYRSLGNYPat  85
            MTLLEVIIVLGIMGVVSAGVVTLAQRAIDSQNMTKAAQNLNSVQ+A+TQTYR+LGNYP T
Sbjct  1    MTLLEVIIVLGIMGVVSAGVVTLAQRAIDSQNMTKAAQNLNSVQVALTQTYRGLGNYPET  60

Query  86   ananaatQLANGLVSLGKVSADEAKNPFTGTAMGIFSFPRNSAANKAFAITVGGLTQAQC  145
            A+  AA++L+ GLVSLGK+S+DEAKNPFTG+ M IFSF RN+AANKAFAI+V+GLTQAQC
Sbjct  61   ADDTAAAKLTAGLVSLGKISPDEAKNPFTGADMNIFSFDRNGAANKAFAISVDGLTQAQC  120

Query  146  KTLVTSVGDMFPFINVKEGAFAAVADLGDFETSVADAATGAGVIKSIAPGSANLNLTNIT  205
            KTLVTSVGDMFP++ VK++A  A ADL+DFET+ A A TG GVIKSI+P + NLNLT+IT
Sbjct  121  KTLVTSVGDMFPYVLVKNAAKVAKADLSDFETTAAVADTGVGVIKSISPTGKNLNLTDIT  180

Query  206  HVEKLC----TGTAPFTVAFG  222
            HVEKLC     G++ F+VAFG
Sbjct  181  HVEKLCAAAAGGATTFSVAFG  201

6) VC0828 in NC_002505


> AF452580|1|G1|18071800|AAL58339.1|Vibrio_cholerae_366-96|+|1..605|tcpA|-|TcpA
Length=201

 Score =  241 bits (901),  Expect = 1e-65, Method: Compositional matrix adjust.
 Identities = 153/201 (77%), Positives = 178/201 (89%), Gaps = 4/201 (1%)

Query  26   MTLLEVIIVLGIMGVVSAGVVTLAQRAIDSQNMTKAAQNLNSVQIAMTQTYRSLGNYPat  85
            MTLLEVIIVLGIMGVVSAGVVTLAQRAIDSQNMTKAAQNLNSVQ+A+TQTYR+LGNYP T
Sbjct  1    MTLLEVIIVLGIMGVVSAGVVTLAQRAIDSQNMTKAAQNLNSVQVALTQTYRGLGNYPET  60

Query  86   ananaatQLANGLVSLGKVSADEAKNPFTGTAMGIFSFPRNSAANKAFAITVGGLTQAQC  145
            A+  AA++L+ GLVSLGK+S+DEAKNPFTG+ M IFSF RN+AANKAFAI+V+GLTQAQC
Sbjct  61   ADDTAAAKLTAGLVSLGKISPDEAKNPFTGADMNIFSFDRNGAANKAFAISVDGLTQAQC  120

Query  146  KTLVTSVGDMFPFINVKEGAFAAVADLGDFETSVADAATGAGVIKSIAPGSANLNLTNIT  205
            KTLVTSVGDMFP++ VK++A  A ADL+DFET+ A A TG GVIKSI+P + NLNLT+IT
Sbjct  121  KTLVTSVGDMFPYVLVKNAAKVAKADLSDFETTAAVADTGVGVIKSISPTGKNLNLTDIT  180

Query  206  HVEKLC----TGTAPFTVAFG  222
            HVEKLC     G++ F+VAFG
Sbjct  181  HVEKLCAAAAGGATTFSVAFG  201

7) tcpA in NC_016445


> AF452580|1|G1|18071800|AAL58339.1|Vibrio_cholerae_366-96|+|1..605|tcpA|-|TcpA
Length=201

 Score =  237 bits (883),  Expect = 3e-64, Method: Compositional matrix adjust.
 Identities = 153/201 (77%), Positives = 179/201 (90%), Gaps = 4/201 (1%)

Query  26   MTLLEVIIVLGIMGVVSAGVVTLAQRAIDSQNMTKAAQNLNSVQIAMTQTYRSLGNYPat  85
            MTLLEVIIVLGIMGVVSAGVVTLAQRAIDSQNMTKAAQNLNSVQ+A+TQTYR+LGNYP T
Sbjct  1    MTLLEVIIVLGIMGVVSAGVVTLAQRAIDSQNMTKAAQNLNSVQVALTQTYRGLGNYPET  60

Query  86   anasaatqlanGLVSLGKVSADEAKNPFTGTAMGIFSFPRNSAANKAFAITVGGLTQAQC  145
            A+ +AA++L+ GLVSLGK+S+DEAKNPFTG+ M IFSF RN+AANKAFAI+V+GLTQAQC
Sbjct  61   ADDTAAAKLTAGLVSLGKISPDEAKNPFTGADMNIFSFDRNGAANKAFAISVDGLTQAQC  120

Query  146  KTLVTSVGDMFPFINVKEGAFAAVADLGDFETSVADAATGAGVIKSIAPGSANLNLTNIT  205
            KTLVTSVGDMFP++ VK++A  A ADL+DFET+ A A TG GVIKSI+P + NLNLT+IT
Sbjct  121  KTLVTSVGDMFPYVLVKNAAKVAKADLSDFETTAAVADTGVGVIKSISPTGKNLNLTDIT  180

Query  206  HVEKLC----TGTAPFTVAFG  222
            HVEKLC     G++ F+VAFG
Sbjct  181  HVEKLCAAAAGGATTFSVAFG  201

8) tcpA in NC_006841


> AF452580|1|G1|18071800|AAL58339.1|Vibrio_cholerae_366-96|+|1..605|tcpA|-|TcpA
Length=201

 Score =  155 bits (571),  Expect = 2e-39, Method: Compositional matrix adjust.
 Identities = 91/187 (49%), Positives = 136/187 (73%), Gaps = 5/187 (2%)

Query  9    MTLLEVIIVLGIMGVISAGVVILAQRAIDNQNVSKLSQALNTIQTAMVQTYRSKQSYPDV  68
            MTLLEVIIVLGIMGV+SAGVV LAQRAID+QN++K +Q LN++Q A+ QTYR+  +YP+ 
Sbjct  1    MTLLEVIIVLGIMGVVSAGVVTLAQRAIDSQNMTKAAQNLNSVQVALTQTYRGLGNYPET  60

Query  69   LQDAVKAKKLTDALVSMGRVTESDLINPFTGAPMLIFTAKDNKAANRGFAIKVSDLSKDQ  128
             +D+  A KLT +LVS+G+++  +  NPFTGA M IF+   N AAN++FAI V +L++ Q
Sbjct  61   ADDTA-AAKLTAGLVSLGKISPDEAKNPFTGADMNIFSFDRNGAANKAFAISVDGLTQAQ  119

Query  129  CTSLISNSADLFSFIEVQNRGTAMAADF--Y--VDPDATKSVGVIKSTKGGAKTLDLTNL  184
            C +L+++ +D+F+++ V+N +    AD+  +    + A  +VGVIKS    +K L+LT++
Sbjct  120  CKTLVTSVGDMFPYVLVKNAAKVAKADLSDFETTAAVADTGVGVIKSISPTGKNLNLTDI  179

Query  185  DHISALC  191
             H+  LC
Sbjct  180  THVEKLC  186