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PAthogenisity Island DataBase (PAI DB)

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Homologs of tcpA gene of AF452579

protein-level

Hit (GenBank Accn)

Product

Source Genome

Eval.

Ident.(%)

• Sequence Alignments

1) O3Y_03850 in NC_016944


> AF452579|1|G1|18071798|AAL58338.1|Vibrio_cholerae_203-93|+|1..600|tcpA|-|TcpA
Length=199

 Score =  244 bits (910),  Expect = 3e-66, Method: Compositional matrix adjust.
 Identities = 154/199 (78%), Positives = 186/199 (94%), Gaps = 0/199 (0%)

Query  26   MTLLEVIIVLGIMGVVSAGVVTLAQRAIDSQNMTKAAQNLNSVQIAMTQTYRSLGNYPat  85
            MTLLEVIIVLGIMGVVSAGVVTLAQRAIDSQNMTKAAQNLN++Q+++TQTYRSLGNYP+T
Sbjct  1    MTLLEVIIVLGIMGVVSAGVVTLAQRAIDSQNMTKAAQNLNTIQVSLTQTYRSLGNYPTT  60

Query  86   ananaatQLANGLVSLGKVSADEAKNPFTGTAMGIFSFPRNSAANKAFAITVGGLTQAQC  145
            A+A AA+ L++GLVSLGK+SADEAKNPFTGT + I SFPRN+A+NKAFAI+V+GLTQAQC
Sbjct  61   ADAAAAAALTSGLVSLGKISADEAKNPFTGTNLNIWSFPRNAAGNKAFAISVDGLTQAQC  120

Query  146  KTLVTSVGDMFPFINVKEGAFAAVADLGDFETSVADAATGAGVIKSIAPGSANLNLTNIT  205
            KTLVTSVGDMFP+INV++ +  A+ADL DFET+ A+AA+G+G+IKSIA GS NLNLT+IT
Sbjct  121  KTLVTSVGDMFPYINVQQKSAIALADLNDFETNAANAAAGTGIIKSIATGSVNLNLTEIT  180

Query  206  HVEKLCTGTAPFTVAFGNS  224
            HV++LC+GT+ F+VAFGNS
Sbjct  181  HVQNLCAGTGTFSVAFGNS  199

2) tcpA in NC_012578


> AF452579|1|G1|18071798|AAL58338.1|Vibrio_cholerae_203-93|+|1..600|tcpA|-|TcpA
Length=199

 Score =  244 bits (910),  Expect = 3e-66, Method: Compositional matrix adjust.
 Identities = 154/199 (78%), Positives = 186/199 (94%), Gaps = 0/199 (0%)

Query  26   MTLLEVIIVLGIMGVVSAGVVTLAQRAIDSQNMTKAAQNLNSVQIAMTQTYRSLGNYPat  85
            MTLLEVIIVLGIMGVVSAGVVTLAQRAIDSQNMTKAAQNLN++Q+++TQTYRSLGNYP+T
Sbjct  1    MTLLEVIIVLGIMGVVSAGVVTLAQRAIDSQNMTKAAQNLNTIQVSLTQTYRSLGNYPTT  60

Query  86   ananaatQLANGLVSLGKVSADEAKNPFTGTAMGIFSFPRNSAANKAFAITVGGLTQAQC  145
            A+A AA+ L++GLVSLGK+SADEAKNPFTGT + I SFPRN+A+NKAFAI+V+GLTQAQC
Sbjct  61   ADAAAAAALTSGLVSLGKISADEAKNPFTGTNLNIWSFPRNAAGNKAFAISVDGLTQAQC  120

Query  146  KTLVTSVGDMFPFINVKEGAFAAVADLGDFETSVADAATGAGVIKSIAPGSANLNLTNIT  205
            KTLVTSVGDMFP+INV++ +  A+ADL DFET+ A+AA+G+G+IKSIA GS NLNLT+IT
Sbjct  121  KTLVTSVGDMFPYINVQQKSAIALADLNDFETNAANAAAGTGIIKSIATGSVNLNLTEIT  180

Query  206  HVEKLCTGTAPFTVAFGNS  224
            HV++LC+GT+ F+VAFGNS
Sbjct  181  HVQNLCAGTGTFSVAFGNS  199

3) VCD_003500 in NC_012668


> AF452579|1|G1|18071798|AAL58338.1|Vibrio_cholerae_203-93|+|1..600|tcpA|-|TcpA
Length=199

 Score =  244 bits (910),  Expect = 3e-66, Method: Compositional matrix adjust.
 Identities = 154/199 (78%), Positives = 186/199 (94%), Gaps = 0/199 (0%)

Query  26   MTLLEVIIVLGIMGVVSAGVVTLAQRAIDSQNMTKAAQNLNSVQIAMTQTYRSLGNYPat  85
            MTLLEVIIVLGIMGVVSAGVVTLAQRAIDSQNMTKAAQNLN++Q+++TQTYRSLGNYP+T
Sbjct  1    MTLLEVIIVLGIMGVVSAGVVTLAQRAIDSQNMTKAAQNLNTIQVSLTQTYRSLGNYPTT  60

Query  86   ananaatQLANGLVSLGKVSADEAKNPFTGTAMGIFSFPRNSAANKAFAITVGGLTQAQC  145
            A+A AA+ L++GLVSLGK+SADEAKNPFTGT + I SFPRN+A+NKAFAI+V+GLTQAQC
Sbjct  61   ADAAAAAALTSGLVSLGKISADEAKNPFTGTNLNIWSFPRNAAGNKAFAISVDGLTQAQC  120

Query  146  KTLVTSVGDMFPFINVKEGAFAAVADLGDFETSVADAATGAGVIKSIAPGSANLNLTNIT  205
            KTLVTSVGDMFP+INV++ +  A+ADL DFET+ A+AA+G+G+IKSIA GS NLNLT+IT
Sbjct  121  KTLVTSVGDMFPYINVQQKSAIALADLNDFETNAANAAAGTGIIKSIATGSVNLNLTEIT  180

Query  206  HVEKLCTGTAPFTVAFGNS  224
            HV++LC+GT+ F+VAFGNS
Sbjct  181  HVQNLCAGTGTFSVAFGNS  199

4) VC0828 in NC_002505


> AF452579|1|G1|18071798|AAL58338.1|Vibrio_cholerae_203-93|+|1..600|tcpA|-|TcpA
Length=199

 Score =  244 bits (910),  Expect = 3e-66, Method: Compositional matrix adjust.
 Identities = 154/199 (78%), Positives = 186/199 (94%), Gaps = 0/199 (0%)

Query  26   MTLLEVIIVLGIMGVVSAGVVTLAQRAIDSQNMTKAAQNLNSVQIAMTQTYRSLGNYPat  85
            MTLLEVIIVLGIMGVVSAGVVTLAQRAIDSQNMTKAAQNLN++Q+++TQTYRSLGNYP+T
Sbjct  1    MTLLEVIIVLGIMGVVSAGVVTLAQRAIDSQNMTKAAQNLNTIQVSLTQTYRSLGNYPTT  60

Query  86   ananaatQLANGLVSLGKVSADEAKNPFTGTAMGIFSFPRNSAANKAFAITVGGLTQAQC  145
            A+A AA+ L++GLVSLGK+SADEAKNPFTGT + I SFPRN+A+NKAFAI+V+GLTQAQC
Sbjct  61   ADAAAAAALTSGLVSLGKISADEAKNPFTGTNLNIWSFPRNAAGNKAFAISVDGLTQAQC  120

Query  146  KTLVTSVGDMFPFINVKEGAFAAVADLGDFETSVADAATGAGVIKSIAPGSANLNLTNIT  205
            KTLVTSVGDMFP+INV++ +  A+ADL DFET+ A+AA+G+G+IKSIA GS NLNLT+IT
Sbjct  121  KTLVTSVGDMFPYINVQQKSAIALADLNDFETNAANAAAGTGIIKSIATGSVNLNLTEIT  180

Query  206  HVEKLCTGTAPFTVAFGNS  224
            HV++LC+GT+ F+VAFGNS
Sbjct  181  HVQNLCAGTGTFSVAFGNS  199

5) tcpA in NC_016445


> AF452579|1|G1|18071798|AAL58338.1|Vibrio_cholerae_203-93|+|1..600|tcpA|-|TcpA
Length=199

 Score =  240 bits (894),  Expect = 4e-65, Method: Compositional matrix adjust.
 Identities = 154/199 (78%), Positives = 187/199 (94%), Gaps = 0/199 (0%)

Query  26   MTLLEVIIVLGIMGVVSAGVVTLAQRAIDSQNMTKAAQNLNSVQIAMTQTYRSLGNYPat  85
            MTLLEVIIVLGIMGVVSAGVVTLAQRAIDSQNMTKAAQNLN++Q+++TQTYRSLGNYP+T
Sbjct  1    MTLLEVIIVLGIMGVVSAGVVTLAQRAIDSQNMTKAAQNLNTIQVSLTQTYRSLGNYPTT  60

Query  86   anasaatqlanGLVSLGKVSADEAKNPFTGTAMGIFSFPRNSAANKAFAITVGGLTQAQC  145
            A+A+AA+ L++GLVSLGK+SADEAKNPFTGT + I SFPRN+A+NKAFAI+V+GLTQAQC
Sbjct  61   ADAAAAAALTSGLVSLGKISADEAKNPFTGTNLNIWSFPRNAAGNKAFAISVDGLTQAQC  120

Query  146  KTLVTSVGDMFPFINVKEGAFAAVADLGDFETSVADAATGAGVIKSIAPGSANLNLTNIT  205
            KTLVTSVGDMFP+INV++ +  A+ADL DFET+ A+AA+G+G+IKSIA GS NLNLT+IT
Sbjct  121  KTLVTSVGDMFPYINVQQKSAIALADLNDFETNAANAAAGTGIIKSIATGSVNLNLTEIT  180

Query  206  HVEKLCTGTAPFTVAFGNS  224
            HV++LC+GT+ F+VAFGNS
Sbjct  181  HVQNLCAGTGTFSVAFGNS  199

6) tcpA in NC_012582


> AF452579|1|G1|18071798|AAL58338.1|Vibrio_cholerae_203-93|+|1..600|tcpA|-|TcpA
Length=199

 Score =  238 bits (887),  Expect = 2e-64, Method: Compositional matrix adjust.
 Identities = 159/199 (80%), Positives = 184/199 (93%), Gaps = 0/199 (0%)

Query  26   MTLLEVIIVLGIMGVVSAGVVTLAQRAIDSQNMTKAAQSLNSIQVALTQTYRGLGNYPAT  85
            MTLLEVIIVLGIMGVVSAGVVTLAQRAIDSQNMTKAAQ+LN+IQV+LTQTYR+LGNYP+T
Sbjct  1    MTLLEVIIVLGIMGVVSAGVVTLAQRAIDSQNMTKAAQNLNTIQVSLTQTYRSLGNYPTT  60

Query  86   ADATAASKLTSGLVSLGKISSDEAKNPFIGTNMNIFSFPRNAAANKAFAISVDGLTQAQC  145
            ADA+AA+ LTSGLVSLGKIS+DEAKNPF GTN+NI SFPRNAA+NKAFAISVDGLTQAQC
Sbjct  61   ADAAAAAALTSGLVSLGKISADEAKNPFTGTNLNIWSFPRNAAGNKAFAISVDGLTQAQC  120

Query  146  KTLITSVGDMFPYIAIKaggavaladlgdFENSAAAAETGVGVIKSIAPASKNLDLTNIT  205
            KTL+TSVGDMFPYI ++  +A+ALADL DFE +AA A +G G+IKSIA +S NL+LT+IT
Sbjct  121  KTLVTSVGDMFPYINVQQKSAIALADLNDFETNAANAAAGTGIIKSIATGSVNLNLTEIT  180

Query  206  HVEKLCKGTAPFGVAFGNS  224
            HV++LC GT+ F+VAFGNS
Sbjct  181  HVQNLCAGTGTFSVAFGNS  199

7) tcpA in NC_009457


> AF452579|1|G1|18071798|AAL58338.1|Vibrio_cholerae_203-93|+|1..600|tcpA|-|TcpA
Length=199

 Score =  238 bits (887),  Expect = 2e-64, Method: Compositional matrix adjust.
 Identities = 159/199 (80%), Positives = 184/199 (93%), Gaps = 0/199 (0%)

Query  26   MTLLEVIIVLGIMGVVSAGVVTLAQRAIDSQNMTKAAQSLNSIQVALTQTYRGLGNYPAT  85
            MTLLEVIIVLGIMGVVSAGVVTLAQRAIDSQNMTKAAQ+LN+IQV+LTQTYR+LGNYP+T
Sbjct  1    MTLLEVIIVLGIMGVVSAGVVTLAQRAIDSQNMTKAAQNLNTIQVSLTQTYRSLGNYPTT  60

Query  86   ADATAASKLTSGLVSLGKISSDEAKNPFIGTNMNIFSFPRNAAANKAFAISVDGLTQAQC  145
            ADA+AA+ LTSGLVSLGKIS+DEAKNPF GTN+NI SFPRNAA+NKAFAISVDGLTQAQC
Sbjct  61   ADAAAAAALTSGLVSLGKISADEAKNPFTGTNLNIWSFPRNAAGNKAFAISVDGLTQAQC  120

Query  146  KTLITSVGDMFPYIAIKaggavaladlgdFENSAAAAETGVGVIKSIAPASKNLDLTNIT  205
            KTL+TSVGDMFPYI ++  +A+ALADL DFE +AA A +G G+IKSIA +S NL+LT+IT
Sbjct  121  KTLVTSVGDMFPYINVQQKSAIALADLNDFETNAANAAAGTGIIKSIATGSVNLNLTEIT  180

Query  206  HVEKLCKGTAPFGVAFGNS  224
            HV++LC GT+ F+VAFGNS
Sbjct  181  HVQNLCAGTGTFSVAFGNS  199

8) tcpA in NC_006841


> AF452579|1|G1|18071798|AAL58338.1|Vibrio_cholerae_203-93|+|1..600|tcpA|-|TcpA
Length=199

 Score =  147 bits (541),  Expect = 3e-37, Method: Compositional matrix adjust.
 Identities = 90/192 (47%), Positives = 139/192 (73%), Gaps = 5/192 (2%)

Query  9    MTLLEVIIVLGIMGVISAGVVILAQRAIDNQNVSKLSQALNTIQTAMVQTYRSKQSYPDV  68
            MTLLEVIIVLGIMGV+SAGVV LAQRAID+QN++K +Q LNTIQ ++ QTYRS  +YP  
Sbjct  1    MTLLEVIIVLGIMGVVSAGVVTLAQRAIDSQNMTKAAQNLNTIQVSLTQTYRSLGNYPTT  60

Query  69   LQDAVKAKKLTDALVSMGRVTESDLINPFTGAPMLIFTAKDNKAANRGFAIKVSDLSKDQ  128
              DA  A  LT +LVS+G+++  +  NPFTG+ + I +   N A+N++FAI V +L++ Q
Sbjct  61   -ADAAAAAALTSGLVSLGKISADEAKNPFTGTNLNIWSFPRNAAGNKAFAISVDGLTQAQ  119

Query  129  CTSLISNSADLFSFIEVQNRGTAMAADFY----VDPDATKSVGVIKSTKGGAKTLDLTNL  184
            C +L+++ +D+F++I+VQ++++   AD+       ++A+ + G+IKS   G+  L+LT++
Sbjct  120  CKTLVTSVGDMFPYINVQQKSAIALADLNDFETNAANAAAGTGIIKSIATGSVNLNLTEI  179

Query  185  DHISALCGGPGA  196
             H+  LC+G G+
Sbjct  180  THVQNLCAGTGT  191