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PAthogenisity Island DataBase (PAI DB)

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Homologs of tcpA gene of AF452572

protein-level

Hit (GenBank Accn)

Product

Source Genome

Eval.

Ident.(%)

• Sequence Alignments

1) O3Y_03850 in NC_016944


> AF452572|1|G1|18071785|AAL58332.1|Vibrio_cholerae_506-94|+|1..600|tcpA|-|TcpA
Length=199

 Score =  295 bits (1106),  Expect = 8e-82, Method: Compositional matrix adjust.
 Identities = 199/199 (100%), Positives = 199/199 (100%), Gaps = 0/199 (0%)

Query  26   MTLLEVIIVLGIMGVVSAGVVTLAQRAIDSQNMTKAAQNLNSVQIAMTQTYRSLGNYPat  85
            MTLLEVIIVLGIMGVVSAGVVTLAQRAIDSQNMTKAAQNLNSVQIAMTQTYRSLGNYPAT
Sbjct  1    MTLLEVIIVLGIMGVVSAGVVTLAQRAIDSQNMTKAAQNLNSVQIAMTQTYRSLGNYPAT  60

Query  86   ananaatQLANGLVSLGKVSADEAKNPFTGTAMGIFSFPRNSAANKAFAITVGGLTQAQC  145
            ANANAATQLANGLVSLGKVSADEAKNPFTGTAMGIFSFPRNSAANKAFAITVGGLTQAQC
Sbjct  61   ANANAATQLANGLVSLGKVSADEAKNPFTGTAMGIFSFPRNSAANKAFAITVGGLTQAQC  120

Query  146  KTLVTSVGDMFPFINVKEGAFAAVADLGDFETSVADAATGAGVIKSIAPGSANLNLTNIT  205
            KTLVTSVGDMFPFINVKEGAFAAVADLGDFETSVADAATGAGVIKSIAPGSANLNLTNIT
Sbjct  121  KTLVTSVGDMFPFINVKEGAFAAVADLGDFETSVADAATGAGVIKSIAPGSANLNLTNIT  180

Query  206  HVEKLCTGTAPFTVAFGNS  224
            HVEKLCTGTAPFTVAFGNS
Sbjct  181  HVEKLCTGTAPFTVAFGNS  199

2) tcpA in NC_012578


> AF452572|1|G1|18071785|AAL58332.1|Vibrio_cholerae_506-94|+|1..600|tcpA|-|TcpA
Length=199

 Score =  295 bits (1106),  Expect = 8e-82, Method: Compositional matrix adjust.
 Identities = 199/199 (100%), Positives = 199/199 (100%), Gaps = 0/199 (0%)

Query  26   MTLLEVIIVLGIMGVVSAGVVTLAQRAIDSQNMTKAAQNLNSVQIAMTQTYRSLGNYPat  85
            MTLLEVIIVLGIMGVVSAGVVTLAQRAIDSQNMTKAAQNLNSVQIAMTQTYRSLGNYPAT
Sbjct  1    MTLLEVIIVLGIMGVVSAGVVTLAQRAIDSQNMTKAAQNLNSVQIAMTQTYRSLGNYPAT  60

Query  86   ananaatQLANGLVSLGKVSADEAKNPFTGTAMGIFSFPRNSAANKAFAITVGGLTQAQC  145
            ANANAATQLANGLVSLGKVSADEAKNPFTGTAMGIFSFPRNSAANKAFAITVGGLTQAQC
Sbjct  61   ANANAATQLANGLVSLGKVSADEAKNPFTGTAMGIFSFPRNSAANKAFAITVGGLTQAQC  120

Query  146  KTLVTSVGDMFPFINVKEGAFAAVADLGDFETSVADAATGAGVIKSIAPGSANLNLTNIT  205
            KTLVTSVGDMFPFINVKEGAFAAVADLGDFETSVADAATGAGVIKSIAPGSANLNLTNIT
Sbjct  121  KTLVTSVGDMFPFINVKEGAFAAVADLGDFETSVADAATGAGVIKSIAPGSANLNLTNIT  180

Query  206  HVEKLCTGTAPFTVAFGNS  224
            HVEKLCTGTAPFTVAFGNS
Sbjct  181  HVEKLCTGTAPFTVAFGNS  199

3) VCD_003500 in NC_012668


> AF452572|1|G1|18071785|AAL58332.1|Vibrio_cholerae_506-94|+|1..600|tcpA|-|TcpA
Length=199

 Score =  295 bits (1106),  Expect = 8e-82, Method: Compositional matrix adjust.
 Identities = 199/199 (100%), Positives = 199/199 (100%), Gaps = 0/199 (0%)

Query  26   MTLLEVIIVLGIMGVVSAGVVTLAQRAIDSQNMTKAAQNLNSVQIAMTQTYRSLGNYPat  85
            MTLLEVIIVLGIMGVVSAGVVTLAQRAIDSQNMTKAAQNLNSVQIAMTQTYRSLGNYPAT
Sbjct  1    MTLLEVIIVLGIMGVVSAGVVTLAQRAIDSQNMTKAAQNLNSVQIAMTQTYRSLGNYPAT  60

Query  86   ananaatQLANGLVSLGKVSADEAKNPFTGTAMGIFSFPRNSAANKAFAITVGGLTQAQC  145
            ANANAATQLANGLVSLGKVSADEAKNPFTGTAMGIFSFPRNSAANKAFAITVGGLTQAQC
Sbjct  61   ANANAATQLANGLVSLGKVSADEAKNPFTGTAMGIFSFPRNSAANKAFAITVGGLTQAQC  120

Query  146  KTLVTSVGDMFPFINVKEGAFAAVADLGDFETSVADAATGAGVIKSIAPGSANLNLTNIT  205
            KTLVTSVGDMFPFINVKEGAFAAVADLGDFETSVADAATGAGVIKSIAPGSANLNLTNIT
Sbjct  121  KTLVTSVGDMFPFINVKEGAFAAVADLGDFETSVADAATGAGVIKSIAPGSANLNLTNIT  180

Query  206  HVEKLCTGTAPFTVAFGNS  224
            HVEKLCTGTAPFTVAFGNS
Sbjct  181  HVEKLCTGTAPFTVAFGNS  199

4) VC0828 in NC_002505


> AF452572|1|G1|18071785|AAL58332.1|Vibrio_cholerae_506-94|+|1..600|tcpA|-|TcpA
Length=199

 Score =  295 bits (1106),  Expect = 8e-82, Method: Compositional matrix adjust.
 Identities = 199/199 (100%), Positives = 199/199 (100%), Gaps = 0/199 (0%)

Query  26   MTLLEVIIVLGIMGVVSAGVVTLAQRAIDSQNMTKAAQNLNSVQIAMTQTYRSLGNYPat  85
            MTLLEVIIVLGIMGVVSAGVVTLAQRAIDSQNMTKAAQNLNSVQIAMTQTYRSLGNYPAT
Sbjct  1    MTLLEVIIVLGIMGVVSAGVVTLAQRAIDSQNMTKAAQNLNSVQIAMTQTYRSLGNYPAT  60

Query  86   ananaatQLANGLVSLGKVSADEAKNPFTGTAMGIFSFPRNSAANKAFAITVGGLTQAQC  145
            ANANAATQLANGLVSLGKVSADEAKNPFTGTAMGIFSFPRNSAANKAFAITVGGLTQAQC
Sbjct  61   ANANAATQLANGLVSLGKVSADEAKNPFTGTAMGIFSFPRNSAANKAFAITVGGLTQAQC  120

Query  146  KTLVTSVGDMFPFINVKEGAFAAVADLGDFETSVADAATGAGVIKSIAPGSANLNLTNIT  205
            KTLVTSVGDMFPFINVKEGAFAAVADLGDFETSVADAATGAGVIKSIAPGSANLNLTNIT
Sbjct  121  KTLVTSVGDMFPFINVKEGAFAAVADLGDFETSVADAATGAGVIKSIAPGSANLNLTNIT  180

Query  206  HVEKLCTGTAPFTVAFGNS  224
            HVEKLCTGTAPFTVAFGNS
Sbjct  181  HVEKLCTGTAPFTVAFGNS  199

5) tcpA in NC_016445


> AF452572|1|G1|18071785|AAL58332.1|Vibrio_cholerae_506-94|+|1..600|tcpA|-|TcpA
Length=199

 Score =  288 bits (1077),  Expect = 2e-79, Method: Compositional matrix adjust.
 Identities = 198/199 (99%), Positives = 199/199 (100%), Gaps = 0/199 (0%)

Query  26   MTLLEVIIVLGIMGVVSAGVVTLAQRAIDSQNMTKAAQNLNSVQIAMTQTYRSLGNYPat  85
            MTLLEVIIVLGIMGVVSAGVVTLAQRAIDSQNMTKAAQNLNSVQIAMTQTYRSLGNYPAT
Sbjct  1    MTLLEVIIVLGIMGVVSAGVVTLAQRAIDSQNMTKAAQNLNSVQIAMTQTYRSLGNYPAT  60

Query  86   anasaatqlanGLVSLGKVSADEAKNPFTGTAMGIFSFPRNSAANKAFAITVGGLTQAQC  145
            ANA+AATQLANGLVSLGKVSADEAKNPFTGTAMGIFSFPRNSAANKAFAITVGGLTQAQC
Sbjct  61   ANANAATQLANGLVSLGKVSADEAKNPFTGTAMGIFSFPRNSAANKAFAITVGGLTQAQC  120

Query  146  KTLVTSVGDMFPFINVKEGAFAAVADLGDFETSVADAATGAGVIKSIAPGSANLNLTNIT  205
            KTLVTSVGDMFPFINVKEGAFAAVADLGDFETSVADAATGAGVIKSIAPGSANLNLTNIT
Sbjct  121  KTLVTSVGDMFPFINVKEGAFAAVADLGDFETSVADAATGAGVIKSIAPGSANLNLTNIT  180

Query  206  HVEKLCTGTAPFTVAFGNS  224
            HVEKLCTGTAPFTVAFGNS
Sbjct  181  HVEKLCTGTAPFTVAFGNS  199

6) tcpA in NC_012582


> AF452572|1|G1|18071785|AAL58332.1|Vibrio_cholerae_506-94|+|1..600|tcpA|-|TcpA
Length=199

 Score =  252 bits (940),  Expect = 1e-68, Method: Compositional matrix adjust.
 Identities = 161/199 (81%), Positives = 183/199 (92%), Gaps = 0/199 (0%)

Query  26   MTLLEVIIVLGIMGVVSAGVVTLAQRAIDSQNMTKAAQSLNSIQVALTQTYRGLGNYPAT  85
            MTLLEVIIVLGIMGVVSAGVVTLAQRAIDSQNMTKAAQ+LNS+Q+A+TQTYR+LGNYPAT
Sbjct  1    MTLLEVIIVLGIMGVVSAGVVTLAQRAIDSQNMTKAAQNLNSVQIAMTQTYRSLGNYPAT  60

Query  86   ADATAASKLTSGLVSLGKISSDEAKNPFIGTNMNIFSFPRNAAANKAFAISVDGLTQAQC  145
            A+A AA++L++GLVSLGK+S+DEAKNPF GT M IFSFPRN+AANKAFAI+V+GLTQAQC
Sbjct  61   ANANAATQLANGLVSLGKVSADEAKNPFTGTAMGIFSFPRNSAANKAFAITVGGLTQAQC  120

Query  146  KTLITSVGDMFPYIAIKaggavaladlgdFENSAAAAETGVGVIKSIAPASKNLDLTNIT  205
            KTL+TSVGDMFP+I +K G+  A+ADLGDFE S A A TG GVIKSIAP+S NL+LTNIT
Sbjct  121  KTLVTSVGDMFPFINVKEGAFAAVADLGDFETSVADAATGAGVIKSIAPGSANLNLTNIT  180

Query  206  HVEKLCKGTAPFGVAFGNS  224
            HVEKLC GTAPF VAFGNS
Sbjct  181  HVEKLCTGTAPFTVAFGNS  199

7) tcpA in NC_009457


> AF452572|1|G1|18071785|AAL58332.1|Vibrio_cholerae_506-94|+|1..600|tcpA|-|TcpA
Length=199

 Score =  252 bits (940),  Expect = 1e-68, Method: Compositional matrix adjust.
 Identities = 161/199 (81%), Positives = 183/199 (92%), Gaps = 0/199 (0%)

Query  26   MTLLEVIIVLGIMGVVSAGVVTLAQRAIDSQNMTKAAQSLNSIQVALTQTYRGLGNYPAT  85
            MTLLEVIIVLGIMGVVSAGVVTLAQRAIDSQNMTKAAQ+LNS+Q+A+TQTYR+LGNYPAT
Sbjct  1    MTLLEVIIVLGIMGVVSAGVVTLAQRAIDSQNMTKAAQNLNSVQIAMTQTYRSLGNYPAT  60

Query  86   ADATAASKLTSGLVSLGKISSDEAKNPFIGTNMNIFSFPRNAAANKAFAISVDGLTQAQC  145
            A+A AA++L++GLVSLGK+S+DEAKNPF GT M IFSFPRN+AANKAFAI+V+GLTQAQC
Sbjct  61   ANANAATQLANGLVSLGKVSADEAKNPFTGTAMGIFSFPRNSAANKAFAITVGGLTQAQC  120

Query  146  KTLITSVGDMFPYIAIKaggavaladlgdFENSAAAAETGVGVIKSIAPASKNLDLTNIT  205
            KTL+TSVGDMFP+I +K G+  A+ADLGDFE S A A TG GVIKSIAP+S NL+LTNIT
Sbjct  121  KTLVTSVGDMFPFINVKEGAFAAVADLGDFETSVADAATGAGVIKSIAPGSANLNLTNIT  180

Query  206  HVEKLCKGTAPFGVAFGNS  224
            HVEKLC GTAPF VAFGNS
Sbjct  181  HVEKLCTGTAPFTVAFGNS  199

8) tcpA in NC_006841


> AF452572|1|G1|18071785|AAL58332.1|Vibrio_cholerae_506-94|+|1..600|tcpA|-|TcpA
Length=199

 Score =  156 bits (576),  Expect = 6e-40, Method: Compositional matrix adjust.
 Identities = 95/192 (50%), Positives = 143/192 (75%), Gaps = 5/192 (2%)

Query  9    MTLLEVIIVLGIMGVISAGVVILAQRAIDNQNVSKLSQALNTIQTAMVQTYRSKQSYPDV  68
            MTLLEVIIVLGIMGV+SAGVV LAQRAID+QN++K +Q LN++Q AM QTYRS  +YP  
Sbjct  1    MTLLEVIIVLGIMGVVSAGVVTLAQRAIDSQNMTKAAQNLNSVQIAMTQTYRSLGNYPAT  60

Query  69   LQDAVKAKKLTDALVSMGRVTESDLINPFTGAPMLIFTAKDNKAANRGFAIKVSDLSKDQ  128
              +A  A +L+++LVS+G+V+  +  NPFTG++M IF+   N AAN++FAI V++L++ Q
Sbjct  61   -ANANAATQLANGLVSLGKVSADEAKNPFTGTAMGIFSFPRNSAANKAFAITVGGLTQAQ  119

Query  129  CTSLISNSADLFSFIEVQNRGTAMAADF--YVD--PDATKSVGVIKSTKGGAKTLDLTNL  184
            C +L+++ +D+F+FI+V++ + A  AD+  +    +DA+ + GVIKS   G+  L+LTN+
Sbjct  120  CKTLVTSVGDMFPFINVKEGAFAAVADLGDFETSVADAATGAGVIKSIAPGSANLNLTNI  179

Query  185  DHISALCGGPGA  196
             H+  LC G ++
Sbjct  180  THVEKLCTGTAP  191