Homolog Viewer

PAthogenisity Island DataBase (PAI DB)

Home PAIs REIs Genomes Search Links

Homologs of int gene of AF326777

protein-level

Hit (GenBank Accn)

Product

Source Genome

Eval.

Ident.(%)

1) SFxv_1115
( YP_005726666.1 )

putative P4-family integrase

NC_017328
(Shigella flexneri 2002017)

0.0

100

2) E2348C_1072
( YP_002328632.1 )

integrase

NC_011601
(Escherichia coli E2348/69)

0.0

3) ECABU_c10540
( YP_006105156.1 )

putative P4-family integrase

NC_017631
(Escherichia coli ABU 83972)

0.0

4) c1165
( NP_753090.1 )

P4 family integrase

NC_004431
(Escherichia coli CFT073)

0.0

5) i14_1065
( YP_006153193.1 )

P4 family integrase

NC_017652
(Escherichia coli clone D i14)

0.0

6) i02_1065
( YP_006148274.1 )

P4 family integrase

NC_017651
(Escherichia coli clone D i2)

0.0

7) ECOK1_1080
( YP_006100294.1 )

integrase

NC_017628
(Escherichia coli IHE3034)

0.0

8) intA_1
( YP_008570936.1 )

Prophage CP4-57 integrase

NC_022370
(Escherichia coli PMV-1)

0.0

9) ECO111_1210
( YP_003233708.1 )

putative integrase

NC_013364
(Escherichia coli 11128)

0.0

10) ECO26_1259
( YP_003228310.1 )

integrase

NC_013361
(Escherichia coli 11368)

0.0

11) ECH74115_1298
( YP_002269781.1 )

integrase

NC_011353
(Escherichia coli EC4115)

0.0

12) Z1120
( NP_286655.1 )

P4 family integrase

NC_002655
(Escherichia coli EDL933)

0.0

13) Z1559
( NP_287063.1 )

P4 family integrase

NC_002655
(Escherichia coli EDL933)

0.0

14) ECs1299
( NP_309326.1 )

integrase

NC_002695
(Escherichia coli Sakai)

0.0

15) ECSP_1226
( YP_003077150.1 )

P4-family integrase

NC_013008
(Escherichia coli TW14359)

0.0

16) UM146_12475
( YP_006111376.1 )

putative integrase

NC_017632
(Escherichia coli UM146)

0.0

17) UTI89_C1089
( YP_540104.1 )

P4 family integrase

NC_007946
(Escherichia coli UTI89)

0.0

18) CDCO157_1245
( YP_006312115.1 )

putative integrase

NC_017906
(Escherichia coli Xuzhou21)

0.0

19) UMNK88_1178
( YP_006132961.1 )

hypothetical protein

NC_017641
(Escherichia coli UMNK88)

0.0

20) EcSMS35_2277
( YP_001744324.1 )

phage integrase family site specific recombinase

NC_010498
(Escherichia coli SMS-3-5)

0.0

21) O3M_15820
( YP_006770792.1 )

integrase

NC_018650
(Escherichia coli 2009EL-2050)

0.0

22) O3O_09460
( YP_006784981.1 )

integrase

NC_018661
(Escherichia coli 2009EL-2071)

0.0

23) O3K_15835
( YP_006779841.1 )

integrase

NC_018658
(Escherichia coli 2011C-3493)

0.0

24) AHML_07080
( YP_008042547.1 )

putative P4-family integrase

NC_021290
(Aeromonas hydrophila ML09-119)

2e-135

25) R2APBS1_2615
( YP_007590933.1 )

Integrase

NC_020541
(Rhodanobacter sp. 2APBS1)

3e-129

26) C380_06325
( YP_006853613.1 )

P4-family integrase

NC_018708
(Acidovorax sp. KKS102)

6e-129

27) DSC_11940
( YP_004931073.1 )

putative integrase

NC_016147
(Pseudoxanthomonas spadix BD-a59)

2e-122

28) NH8B_1048
( YP_004846294.1 )

P4 family integrase

NC_016002
(Pseudogulbenkiania sp. NH8B)

1e-108

29) LHK_01534
( YP_002795532.1 )

Integrase

NC_012559
(Laribacter hongkongensis HLHK9)

1e-86

30) LHK_02463
( YP_002796454.1 )

Integrase

NC_012559
(Laribacter hongkongensis HLHK9)

2e-77

31) AZOLI_p10794
( YP_004974178.1 )

putative phage integrase

NC_016585
(Azospirillum lipoferum 4B)

3e-63

32) Alide2_1079
( YP_004387002.1 )

integrase family protein

NC_015422
(Alicycliphilus denitrificans K601)

9e-62

33) PP1Y_AT25938
( YP_004535197.1 )

transposase

NC_015580
(Novosphingobium sp. PP1Y)

3e-61

34) MexAM1_META1p4086
( YP_002965017.1 )

Site-specfic recombinase, phage integrase family

NC_012808
(Methylobacterium extorquens AM1)

4e-59

35) GbCGDNIH1_1508
( YP_745329.1 )

transposase

NC_008343
(Granulibacter bethesdensis CGDNIH1)

1e-58

36) Mext_0253
( YP_001637748.1 )

integrase family protein

NC_010172
(Methylobacterium extorquens PA1)

8e-59

37) Bpro_0966
( YP_547820.1 )

phage integrase

NC_007948
(Polaromonas sp. JS666)

1e-57

38) HYPMC_2026
( YP_004675818.1 )

Integrase

NC_015717
(Hyphomicrobium sp. MC1)

2e-56

39) OA238_c14350
( YP_007699044.1 )

DNA integration/recombination/inversion protein

NC_020908
(Octadecabacter arcticus 238)

2e-56

40) intZ [H]
( YP_007217248.1 )

Integrase

NC_019902
(Thioalkalivibrio nitratireducens DSM 14787)

4e-55

41) HYPDE_30553
( YP_007914284.1 )

Integrase

NC_021172
(Hyphomicrobium denitrificans 1NES1)

4e-46

42) XAC29_08375
( YP_007636120.1 )

phage-related integrase

NC_020800
(Xanthomonas axonopodis Xac29-1)

2e-44

• Sequence Alignments

1) SFxv_1115 in NC_017328


> AF326777|1|G1|15808697|AAL08426.1|Shigella_flexneri_2a_YSH6000|+|619..1836|int|-|integrase
Length=405

 Score =  666 bits (2516),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 405/405 (100%), Positives = 405/405 (100%), Gaps = 0/405 (0%)

Query  1    MAVLTDTKARHIKPDDKPLPHGGITGLTLHPSSVKGRGKWVFRYVSPVTQKRRNAGLGTY  60
            MAVLTDTKARHIKPDDKPLPHGGITGLTLHPSSVKGRGKWVFRYVSPVTQKRRNAGLGTY
Sbjct  1    MAVLTDTKARHIKPDDKPLPHGGITGLTLHPSSVKGRGKWVFRYVSPVTQKRRNAGLGTY  60

Query  61   PEVSIAEAARTARIMREQLAAGDDPLEIKKAESEKVVIPTFADAARRVHAELSPGWENPK  120
            PEVSIAEAARTARIMREQLAAGDDPLEIKKAESEKVVIPTFADAARRVHAELSPGWENPK
Sbjct  61   PEVSIAEAARTARIMREQLAAGDDPLEIKKAESEKVVIPTFADAARRVHAELSPGWENPK  120

Query  121  HVRQWLSTLENYAFPQLGAKTLDSITAADVAETLRPVWLTLSETASRVKQRIHVVMQWGW  180
            HVRQWLSTLENYAFPQLGAKTLDSITAADVAETLRPVWLTLSETASRVKQRIHVVMQWGW
Sbjct  121  HVRQWLSTLENYAFPQLGAKTLDSITAADVAETLRPVWLTLSETASRVKQRIHVVMQWGW  180

Query  181  AHGFCVANPVDVVDHLLPQQTRGRDEHQPAMPWRQLPLFVATSVYSDEPYNVTRALLLMV  240
            AHGFCVANPVDVVDHLLPQQTRGRDEHQPAMPWRQLPLFVATSVYSDEPYNVTRALLLMV
Sbjct  181  AHGFCVANPVDVVDHLLPQQTRGRDEHQPAMPWRQLPLFVATSVYSDEPYNVTRALLLMV  240

Query  241  ILTATRSGEARGMRWAEIDFHKRVWTIPAERMKARLQHRVPLSRQAIYILENIRGLHDEL  300
            ILTATRSGEARGMRWAEIDFHKRVWTIPAERMKARLQHRVPLSRQAIYILENIRGLHDEL
Sbjct  241  ILTATRSGEARGMRWAEIDFHKRVWTIPAERMKARLQHRVPLSRQAIYILENIRGLHDEL  300

Query  301  VFPSPRKQQILSDMVLTSFLRKKKAVSDIPGRVATAHGFRSTFRDWCSEQGYSRDLAERA  360
            VFPSPRKQQILSDMVLTSFLRKKKAVSDIPGRVATAHGFRSTFRDWCSEQGYSRDLAERA
Sbjct  301  VFPSPRKQQILSDMVLTSFLRKKKAVSDIPGRVATAHGFRSTFRDWCSEQGYSRDLAERA  360

Query  361  LAHTLKNKVEAAYHRTDLLEQRVPMMQAWADYVMSQLAKNTKEFA  405
            LAHTLKNKVEAAYHRTDLLEQRVPMMQAWADYVMSQLAKNTKEFA
Sbjct  361  LAHTLKNKVEAAYHRTDLLEQRVPMMQAWADYVMSQLAKNTKEFA  405

2) E2348C_1072 in NC_011601


> AF326777|1|G1|15808697|AAL08426.1|Shigella_flexneri_2a_YSH6000|+|619..1836|int|-|integrase
Length=405

 Score =  657 bits (2483),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 397/405 (99%), Positives = 404/405 (99%), Gaps = 0/405 (0%)

Query  1    MAVLTDTKARHIKPDDKPLPHGGITGLTLHPSSVKGRGKWVFRYVSPVTQKRRNAGLGTY  60
            MAVLTDTKARHIKPDDKPLPHGGITGLTLHPSSVKGRGKWVFRYVSPVTQKRRNAGLGTY
Sbjct  1    MAVLTDTKARHIKPDDKPLPHGGITGLTLHPSSVKGRGKWVFRYVSPVTQKRRNAGLGTY  60

Query  61   PEVSIAEAARTARIMREQLAAGDDPLEIKKAESEKVVIPTFADAARRVHAELSPGWENPK  120
            PEVSIAEAARTARIMREQLAAGDDPLEIKKAESEKVVIPTFADAARRVHAELSPGWENPK
Sbjct  61   PEVSIAEAARTARIMREQLAAGDDPLEIKKAESEKVVIPTFADAARRVHAELSPGWENPK  120

Query  121  HVRQWLSTLENYAFPQLGAKTLDSITAADVAETLRPVWLTLSETASRVKQRIHVVMQWGW  180
            HVRQWLSTLENYAFPQLGAKTLDSITAADVAETLRPVWLTLSETASRVKQRIHVVMQWGW
Sbjct  121  HVRQWLSTLENYAFPQLGAKTLDSITAADVAETLRPVWLTLSETASRVKQRIHVVMQWGW  180

Query  181  AHGFCVANPVDVVDHLLPQKTRGRDEHQPAMPWRQLPLFVATSVYTDEPYNVTRALLLMV  240
            AHGFCVANPVDVVDHLLPQ+TRGRDEHQPAMPWRQLPLFVATSVY+DEPYNVTRALLLMV
Sbjct  181  AHGFCVANPVDVVDHLLPQQTRGRDEHQPAMPWRQLPLFVATSVYSDEPYNVTRALLLMV  240

Query  241  ILTATRSGEARGMRWAEIDFHKRIWTIPAERMKARIQHRVPLSRQAMHILENIRGLHDEL  300
            ILTATRSGEARGMRWAEIDFHKR+WTIPAERMKAR+QHRVPLSRQA+ ILENIRGLHDEL
Sbjct  241  ILTATRSGEARGMRWAEIDFHKRVWTIPAERMKARLQHRVPLSRQAIYILENIRGLHDEL  300

Query  301  VFPSPRKQQILSDMVLTSFLRKKKAISDIPGRVATAHGFRSTFRDWCSEQGYSRDLAERA  360
            VFPSPRKQQILSDMVLTSFLRKKKA+SDIPGRVATAHGFRSTFRDWCSEQGYSRDLAERA
Sbjct  301  VFPSPRKQQILSDMVLTSFLRKKKAVSDIPGRVATAHGFRSTFRDWCSEQGYSRDLAERA  360

Query  361  LAHTLKNKVEAAYHRTDLLEQRVPMMQAWADYVMSQFAKNTKEFA  405
            LAHTLKNKVEAAYHRTDLLEQRVPMMQAWADYVMSQ+AKNTKEFA
Sbjct  361  LAHTLKNKVEAAYHRTDLLEQRVPMMQAWADYVMSQLAKNTKEFA  405

3) ECABU_c10540 in NC_017631


> AF326777|1|G1|15808697|AAL08426.1|Shigella_flexneri_2a_YSH6000|+|619..1836|int|-|integrase
Length=405

 Score =  654 bits (2471),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 396/400 (99%), Positives = 399/400 (99%), Gaps = 0/400 (0%)

Query  1    MAVLTDTKARHIKPDDKPLPHGGITGLTLHPSSVKGRGKWVFRYVSPVTQKRRNAGLGTY  60
            MAVLTDTKARHIKPDDKPLPHGGITGLTLHPSSVKGRGKWVFRYVSPVTQKRRNAGLGTY
Sbjct  1    MAVLTDTKARHIKPDDKPLPHGGITGLTLHPSSVKGRGKWVFRYVSPVTQKRRNAGLGTY  60

Query  61   PEVSIAEAARTARIMREQLAAGDDPLEIKKAESEKVVIPTFADAARRVHAELSPGWENPK  120
            PEVSIAEAARTARIMREQLAAGDDPLEIKKAESEKVVIPTFADAARRVHAELSPGWENPK
Sbjct  61   PEVSIAEAARTARIMREQLAAGDDPLEIKKAESEKVVIPTFADAARRVHAELSPGWENPK  120

Query  121  HVRQWLSTLENYAFPQLGAKTLDSITAADVAETLRPVWLTLSETASRVKQRIHVVMQWGW  180
            HVRQWLSTLENYAFPQLGAKTLDSITAADVAETLRPVWLTLSETASRVKQRIHVVMQWGW
Sbjct  121  HVRQWLSTLENYAFPQLGAKTLDSITAADVAETLRPVWLTLSETASRVKQRIHVVMQWGW  180

Query  181  AHGFCVANPVDVVDHLLPQQTRGRDEHQPAMPWRQLPLFVATSVYSDEPYNVTRALLLMV  240
            AHGFCVANPVDVVDHLLPQQTRGRDEHQPAMPWRQLPLFVATSVYSDEPYNVTRALLLMV
Sbjct  181  AHGFCVANPVDVVDHLLPQQTRGRDEHQPAMPWRQLPLFVATSVYSDEPYNVTRALLLMV  240

Query  241  ILTATRSGEARGMRWAEIDFHKRVWTIPAERMKARLQHRVPLSRQAIYILENIRGLHDEL  300
            ILTATRSGEARGMRWAEIDFHKRVWTIPAERMKARLQHRVPLSRQAIYILENIRGLHDEL
Sbjct  241  ILTATRSGEARGMRWAEIDFHKRVWTIPAERMKARLQHRVPLSRQAIYILENIRGLHDEL  300

Query  301  VFPSPRKQQILSDMVLTSFLRKKKAVSDIPGRVATAHGFRSTFRDWCSEQGYSRDLAERA  360
            VFPSPRKQQILSDMVLTSFLRKKKAVSDIPGRVATAHGFRSTFRDWCSEQGYSRDLAERA
Sbjct  301  VFPSPRKQQILSDMVLTSFLRKKKAVSDIPGRVATAHGFRSTFRDWCSEQGYSRDLAERA  360

Query  361  LAHTLKNKVEAAYHRTDLLEQRVPMMQAWADYVMSQIVNK  400
            LAHTLKNKVEAAYHRTDLLEQRVPMMQAWADYVMSQ+ ++
Sbjct  361  LAHTLKNKVEAAYHRTDLLEQRVPMMQAWADYVMSQLAKN  400

4) c1165 in NC_004431


> AF326777|1|G1|15808697|AAL08426.1|Shigella_flexneri_2a_YSH6000|+|619..1836|int|-|integrase
Length=405

 Score =  654 bits (2471),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 396/400 (99%), Positives = 399/400 (99%), Gaps = 0/400 (0%)

Query  1    MAVLTDTKARHIKPDDKPLPHGGITGLTLHPSSVKGRGKWVFRYVSPVTQKRRNAGLGTY  60
            MAVLTDTKARHIKPDDKPLPHGGITGLTLHPSSVKGRGKWVFRYVSPVTQKRRNAGLGTY
Sbjct  1    MAVLTDTKARHIKPDDKPLPHGGITGLTLHPSSVKGRGKWVFRYVSPVTQKRRNAGLGTY  60

Query  61   PEVSIAEAARTARIMREQLAAGDDPLEIKKAESEKVVIPTFADAARRVHAELSPGWENPK  120
            PEVSIAEAARTARIMREQLAAGDDPLEIKKAESEKVVIPTFADAARRVHAELSPGWENPK
Sbjct  61   PEVSIAEAARTARIMREQLAAGDDPLEIKKAESEKVVIPTFADAARRVHAELSPGWENPK  120

Query  121  HVRQWLSTLENYAFPQLGAKTLDSITAADVAETLRPVWLTLSETASRVKQRIHVVMQWGW  180
            HVRQWLSTLENYAFPQLGAKTLDSITAADVAETLRPVWLTLSETASRVKQRIHVVMQWGW
Sbjct  121  HVRQWLSTLENYAFPQLGAKTLDSITAADVAETLRPVWLTLSETASRVKQRIHVVMQWGW  180

Query  181  AHGFCVANPVDVVDHLLPQQTRGRDEHQPAMPWRQLPLFVATSVYSDEPYNVTRALLLMV  240
            AHGFCVANPVDVVDHLLPQQTRGRDEHQPAMPWRQLPLFVATSVYSDEPYNVTRALLLMV
Sbjct  181  AHGFCVANPVDVVDHLLPQQTRGRDEHQPAMPWRQLPLFVATSVYSDEPYNVTRALLLMV  240

Query  241  ILTATRSGEARGMRWAEIDFHKRVWTIPAERMKARLQHRVPLSRQAIYILENIRGLHDEL  300
            ILTATRSGEARGMRWAEIDFHKRVWTIPAERMKARLQHRVPLSRQAIYILENIRGLHDEL
Sbjct  241  ILTATRSGEARGMRWAEIDFHKRVWTIPAERMKARLQHRVPLSRQAIYILENIRGLHDEL  300

Query  301  VFPSPRKQQILSDMVLTSFLRKKKAVSDIPGRVATAHGFRSTFRDWCSEQGYSRDLAERA  360
            VFPSPRKQQILSDMVLTSFLRKKKAVSDIPGRVATAHGFRSTFRDWCSEQGYSRDLAERA
Sbjct  301  VFPSPRKQQILSDMVLTSFLRKKKAVSDIPGRVATAHGFRSTFRDWCSEQGYSRDLAERA  360

Query  361  LAHTLKNKVEAAYHRTDLLEQRVPMMQAWADYVMSQIVNK  400
            LAHTLKNKVEAAYHRTDLLEQRVPMMQAWADYVMSQ+ ++
Sbjct  361  LAHTLKNKVEAAYHRTDLLEQRVPMMQAWADYVMSQLAKN  400

5) i14_1065 in NC_017652


> AF326777|1|G1|15808697|AAL08426.1|Shigella_flexneri_2a_YSH6000|+|619..1836|int|-|integrase
Length=405

 Score =  654 bits (2471),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 396/400 (99%), Positives = 399/400 (99%), Gaps = 0/400 (0%)

Query  1    MAVLTDTKARHIKPDDKPLPHGGITGLTLHPSSVKGRGKWVFRYVSPVTQKRRNAGLGTY  60
            MAVLTDTKARHIKPDDKPLPHGGITGLTLHPSSVKGRGKWVFRYVSPVTQKRRNAGLGTY
Sbjct  1    MAVLTDTKARHIKPDDKPLPHGGITGLTLHPSSVKGRGKWVFRYVSPVTQKRRNAGLGTY  60

Query  61   PEVSIAEAARTARIMREQLAAGDDPLEIKKAESEKVVIPTFADAARRVHAELSPGWENPK  120
            PEVSIAEAARTARIMREQLAAGDDPLEIKKAESEKVVIPTFADAARRVHAELSPGWENPK
Sbjct  61   PEVSIAEAARTARIMREQLAAGDDPLEIKKAESEKVVIPTFADAARRVHAELSPGWENPK  120

Query  121  HVRQWLSTLENYAFPQLGAKTLDSITAADVAETLRPVWLTLSETASRVKQRIHVVMQWGW  180
            HVRQWLSTLENYAFPQLGAKTLDSITAADVAETLRPVWLTLSETASRVKQRIHVVMQWGW
Sbjct  121  HVRQWLSTLENYAFPQLGAKTLDSITAADVAETLRPVWLTLSETASRVKQRIHVVMQWGW  180

Query  181  AHGFCVANPVDVVDHLLPQQTRGRDEHQPAMPWRQLPLFVATSVYSDEPYNVTRALLLMV  240
            AHGFCVANPVDVVDHLLPQQTRGRDEHQPAMPWRQLPLFVATSVYSDEPYNVTRALLLMV
Sbjct  181  AHGFCVANPVDVVDHLLPQQTRGRDEHQPAMPWRQLPLFVATSVYSDEPYNVTRALLLMV  240

Query  241  ILTATRSGEARGMRWAEIDFHKRVWTIPAERMKARLQHRVPLSRQAIYILENIRGLHDEL  300
            ILTATRSGEARGMRWAEIDFHKRVWTIPAERMKARLQHRVPLSRQAIYILENIRGLHDEL
Sbjct  241  ILTATRSGEARGMRWAEIDFHKRVWTIPAERMKARLQHRVPLSRQAIYILENIRGLHDEL  300

Query  301  VFPSPRKQQILSDMVLTSFLRKKKAVSDIPGRVATAHGFRSTFRDWCSEQGYSRDLAERA  360
            VFPSPRKQQILSDMVLTSFLRKKKAVSDIPGRVATAHGFRSTFRDWCSEQGYSRDLAERA
Sbjct  301  VFPSPRKQQILSDMVLTSFLRKKKAVSDIPGRVATAHGFRSTFRDWCSEQGYSRDLAERA  360

Query  361  LAHTLKNKVEAAYHRTDLLEQRVPMMQAWADYVMSQIVNK  400
            LAHTLKNKVEAAYHRTDLLEQRVPMMQAWADYVMSQ+ ++
Sbjct  361  LAHTLKNKVEAAYHRTDLLEQRVPMMQAWADYVMSQLAKN  400

6) i02_1065 in NC_017651


> AF326777|1|G1|15808697|AAL08426.1|Shigella_flexneri_2a_YSH6000|+|619..1836|int|-|integrase
Length=405

 Score =  654 bits (2471),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 396/400 (99%), Positives = 399/400 (99%), Gaps = 0/400 (0%)

Query  1    MAVLTDTKARHIKPDDKPLPHGGITGLTLHPSSVKGRGKWVFRYVSPVTQKRRNAGLGTY  60
            MAVLTDTKARHIKPDDKPLPHGGITGLTLHPSSVKGRGKWVFRYVSPVTQKRRNAGLGTY
Sbjct  1    MAVLTDTKARHIKPDDKPLPHGGITGLTLHPSSVKGRGKWVFRYVSPVTQKRRNAGLGTY  60

Query  61   PEVSIAEAARTARIMREQLAAGDDPLEIKKAESEKVVIPTFADAARRVHAELSPGWENPK  120
            PEVSIAEAARTARIMREQLAAGDDPLEIKKAESEKVVIPTFADAARRVHAELSPGWENPK
Sbjct  61   PEVSIAEAARTARIMREQLAAGDDPLEIKKAESEKVVIPTFADAARRVHAELSPGWENPK  120

Query  121  HVRQWLSTLENYAFPQLGAKTLDSITAADVAETLRPVWLTLSETASRVKQRIHVVMQWGW  180
            HVRQWLSTLENYAFPQLGAKTLDSITAADVAETLRPVWLTLSETASRVKQRIHVVMQWGW
Sbjct  121  HVRQWLSTLENYAFPQLGAKTLDSITAADVAETLRPVWLTLSETASRVKQRIHVVMQWGW  180

Query  181  AHGFCVANPVDVVDHLLPQQTRGRDEHQPAMPWRQLPLFVATSVYSDEPYNVTRALLLMV  240
            AHGFCVANPVDVVDHLLPQQTRGRDEHQPAMPWRQLPLFVATSVYSDEPYNVTRALLLMV
Sbjct  181  AHGFCVANPVDVVDHLLPQQTRGRDEHQPAMPWRQLPLFVATSVYSDEPYNVTRALLLMV  240

Query  241  ILTATRSGEARGMRWAEIDFHKRVWTIPAERMKARLQHRVPLSRQAIYILENIRGLHDEL  300
            ILTATRSGEARGMRWAEIDFHKRVWTIPAERMKARLQHRVPLSRQAIYILENIRGLHDEL
Sbjct  241  ILTATRSGEARGMRWAEIDFHKRVWTIPAERMKARLQHRVPLSRQAIYILENIRGLHDEL  300

Query  301  VFPSPRKQQILSDMVLTSFLRKKKAVSDIPGRVATAHGFRSTFRDWCSEQGYSRDLAERA  360
            VFPSPRKQQILSDMVLTSFLRKKKAVSDIPGRVATAHGFRSTFRDWCSEQGYSRDLAERA
Sbjct  301  VFPSPRKQQILSDMVLTSFLRKKKAVSDIPGRVATAHGFRSTFRDWCSEQGYSRDLAERA  360

Query  361  LAHTLKNKVEAAYHRTDLLEQRVPMMQAWADYVMSQIVNK  400
            LAHTLKNKVEAAYHRTDLLEQRVPMMQAWADYVMSQ+ ++
Sbjct  361  LAHTLKNKVEAAYHRTDLLEQRVPMMQAWADYVMSQLAKN  400

7) ECOK1_1080 in NC_017628


> AF326777|1|G1|15808697|AAL08426.1|Shigella_flexneri_2a_YSH6000|+|619..1836|int|-|integrase
Length=405

 Score =  654 bits (2472),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 395/400 (99%), Positives = 399/400 (99%), Gaps = 0/400 (0%)

Query  1    MAVLTDTKARHIKPDDKPLPHGGITGLTLHPSSVKGRGKWVFRYVSPVTQKRRNAGLGTY  60
            MAVLTDTKARHIKPDDKPLPHGGITGLTLHPSSVKGRGKWVFRYVSPVTQKRRNAGLGTY
Sbjct  1    MAVLTDTKARHIKPDDKPLPHGGITGLTLHPSSVKGRGKWVFRYVSPVTQKRRNAGLGTY  60

Query  61   PEVSIAEAARTARIMREQLAAGDDPLEIKKAESEKVVIPTFADAARRVHAELSPGWENPK  120
            PEVSIAEAARTARIMREQLAAGDDPLEIKKAESEKVVIPTFADAARRVHAELSPGWENPK
Sbjct  61   PEVSIAEAARTARIMREQLAAGDDPLEIKKAESEKVVIPTFADAARRVHAELSPGWENPK  120

Query  121  HVRQWLSTLENYAFPQLGAKTLDSITAADVAETLRPVWLTLSETASRVKQRIHVVMQWGW  180
            HVRQWLSTLENYAFPQLGAKTLDSITAADVAETLRPVWLTLSETASRVKQRIHVVMQWGW
Sbjct  121  HVRQWLSTLENYAFPQLGAKTLDSITAADVAETLRPVWLTLSETASRVKQRIHVVMQWGW  180

Query  181  AHGFCVANPVDVVDHLLPQQTRGRDEHQPAMPWRQLPLFVATSVYTDEPYNVTRALLLMV  240
            AHGFCVANPVDVVDHLLPQQTRGRDEHQPAMPWRQLPLFVATSVY+DEPYNVTRALLLMV
Sbjct  181  AHGFCVANPVDVVDHLLPQQTRGRDEHQPAMPWRQLPLFVATSVYSDEPYNVTRALLLMV  240

Query  241  ILTATRSGEARGMRWAEIDFHKRVWTIPAERMKARLQHRVPLSRQAIYILENIRGLHDEL  300
            ILTATRSGEARGMRWAEIDFHKRVWTIPAERMKARLQHRVPLSRQAIYILENIRGLHDEL
Sbjct  241  ILTATRSGEARGMRWAEIDFHKRVWTIPAERMKARLQHRVPLSRQAIYILENIRGLHDEL  300

Query  301  VFPSPRKQQILSDMVLTSFLRKKKAVSDIPGRVATAHGFRSTFRDWCSEQGYSRDLAERA  360
            VFPSPRKQQILSDMVLTSFLRKKKAVSDIPGRVATAHGFRSTFRDWCSEQGYSRDLAERA
Sbjct  301  VFPSPRKQQILSDMVLTSFLRKKKAVSDIPGRVATAHGFRSTFRDWCSEQGYSRDLAERA  360

Query  361  LAHTLKNKVEAAYHRTDLLEQRVPMMQAWADYVMSQIVNK  400
            LAHTLKNKVEAAYHRTDLLEQRVPMMQAWADYVMSQ+ ++
Sbjct  361  LAHTLKNKVEAAYHRTDLLEQRVPMMQAWADYVMSQLAKN  400

8) intA_1 in NC_022370


> AF326777|1|G1|15808697|AAL08426.1|Shigella_flexneri_2a_YSH6000|+|619..1836|int|-|integrase
Length=405

 Score =  654 bits (2472),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 395/400 (99%), Positives = 399/400 (99%), Gaps = 0/400 (0%)

Query  1    MAVLTDTKARHIKPDDKPLPHGGITGLTLHPSSVKGRGKWVFRYVSPVTQKRRNAGLGTY  60
            MAVLTDTKARHIKPDDKPLPHGGITGLTLHPSSVKGRGKWVFRYVSPVTQKRRNAGLGTY
Sbjct  1    MAVLTDTKARHIKPDDKPLPHGGITGLTLHPSSVKGRGKWVFRYVSPVTQKRRNAGLGTY  60

Query  61   PEVSIAEAARTARIMREQLAAGDDPLEIKKAESEKVVIPTFADAARRVHAELSPGWENPK  120
            PEVSIAEAARTARIMREQLAAGDDPLEIKKAESEKVVIPTFADAARRVHAELSPGWENPK
Sbjct  61   PEVSIAEAARTARIMREQLAAGDDPLEIKKAESEKVVIPTFADAARRVHAELSPGWENPK  120

Query  121  HVRQWLSTLENYAFPQLGAKTLDSITAADVAETLRPVWLTLSETASRVKQRIHVVMQWGW  180
            HVRQWLSTLENYAFPQLGAKTLDSITAADVAETLRPVWLTLSETASRVKQRIHVVMQWGW
Sbjct  121  HVRQWLSTLENYAFPQLGAKTLDSITAADVAETLRPVWLTLSETASRVKQRIHVVMQWGW  180

Query  181  AHGFCVANPVDVVDHLLPQQTRGRDEHQPAMPWRQLPLFVATSVYTDEPYNVTRALLLMV  240
            AHGFCVANPVDVVDHLLPQQTRGRDEHQPAMPWRQLPLFVATSVY+DEPYNVTRALLLMV
Sbjct  181  AHGFCVANPVDVVDHLLPQQTRGRDEHQPAMPWRQLPLFVATSVYSDEPYNVTRALLLMV  240

Query  241  ILTATRSGEARGMRWAEIDFHKRVWTIPAERMKARLQHRVPLSRQAIYILENIRGLHDEL  300
            ILTATRSGEARGMRWAEIDFHKRVWTIPAERMKARLQHRVPLSRQAIYILENIRGLHDEL
Sbjct  241  ILTATRSGEARGMRWAEIDFHKRVWTIPAERMKARLQHRVPLSRQAIYILENIRGLHDEL  300

Query  301  VFPSPRKQQILSDMVLTSFLRKKKAVSDIPGRVATAHGFRSTFRDWCSEQGYSRDLAERA  360
            VFPSPRKQQILSDMVLTSFLRKKKAVSDIPGRVATAHGFRSTFRDWCSEQGYSRDLAERA
Sbjct  301  VFPSPRKQQILSDMVLTSFLRKKKAVSDIPGRVATAHGFRSTFRDWCSEQGYSRDLAERA  360

Query  361  LAHTLKNKVEAAYHRTDLLEQRVPMMQAWADYVMSQIVNK  400
            LAHTLKNKVEAAYHRTDLLEQRVPMMQAWADYVMSQ+ ++
Sbjct  361  LAHTLKNKVEAAYHRTDLLEQRVPMMQAWADYVMSQLAKN  400

9) ECO111_1210 in NC_013364


> AF326777|1|G1|15808697|AAL08426.1|Shigella_flexneri_2a_YSH6000|+|619..1836|int|-|integrase
Length=405

 Score =  651 bits (2462),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 393/400 (99%), Positives = 398/400 (99%), Gaps = 0/400 (0%)

Query  1    MAVLTDTKARHIKPDDKPLPHGGITGLTLHPSSVKGRGKWVFRYVSPVTQKRRNAGLGTY  60
            MAVLTDTKARHIKPDDKPLPHGGITGLTLHPSSVKGRGKWVFRYVSPVTQKRRNAGLGTY
Sbjct  1    MAVLTDTKARHIKPDDKPLPHGGITGLTLHPSSVKGRGKWVFRYVSPVTQKRRNAGLGTY  60

Query  61   PEVSIAEAARTARIMREQLAAGDDPLEIKKAESEKVAIPTFADAARRVHAELSPGWENPK  120
            PEVSIAEAARTARIMREQLAAGDDPLEIKKAESEKV IPTFADAARRVHAELSPGWENPK
Sbjct  61   PEVSIAEAARTARIMREQLAAGDDPLEIKKAESEKVVIPTFADAARRVHAELSPGWENPK  120

Query  121  HVRQWLSTLENYAFPQLGAKTLDSITAADVAETLRPVWLTLSETASRVKQRIHVVMQWGW  180
            HVRQWLSTLENYAFPQLGAKTLDSITAADVAETLRPVWLTLSETASRVKQRIHVVMQWGW
Sbjct  121  HVRQWLSTLENYAFPQLGAKTLDSITAADVAETLRPVWLTLSETASRVKQRIHVVMQWGW  180

Query  181  AHGFCVANPVDVVDHLLPQQTRGRDEHQPAMPWRQLPLFVATSVYTDEPYNVTRALLLMV  240
            AHGFCVANPVDVVDHLLPQQTRGRDEHQPAMPWRQLPLFVATSVY+DEPYNVTRALLLMV
Sbjct  181  AHGFCVANPVDVVDHLLPQQTRGRDEHQPAMPWRQLPLFVATSVYSDEPYNVTRALLLMV  240

Query  241  ILTATRSGEARGMRWAEIDFHKRVWTIPAERMKARIQHRVPLSRQAIYILENIRGLHDEL  300
            ILTATRSGEARGMRWAEIDFHKRVWTIPAERMKAR+QHRVPLSRQAIYILENIRGLHDEL
Sbjct  241  ILTATRSGEARGMRWAEIDFHKRVWTIPAERMKARLQHRVPLSRQAIYILENIRGLHDEL  300

Query  301  VFPSPRKQQILSDMVLTSFLRKKKAVSDIPGRVATAHGFRSTFRDWCSEQGYSRDLAERA  360
            VFPSPRKQQILSDMVLTSFLRKKKAVSDIPGRVATAHGFRSTFRDWCSEQGYSRDLAERA
Sbjct  301  VFPSPRKQQILSDMVLTSFLRKKKAVSDIPGRVATAHGFRSTFRDWCSEQGYSRDLAERA  360

Query  361  LAHTLKNKVEAAYHRTDLLEQRVPMMQAWADYVMSQIVNK  400
            LAHTLKNKVEAAYHRTDLLEQRVPMMQAWADYVMSQ+ ++
Sbjct  361  LAHTLKNKVEAAYHRTDLLEQRVPMMQAWADYVMSQLAKN  400

10) ECH74115_1298 in NC_011353


> AF326777|1|G1|15808697|AAL08426.1|Shigella_flexneri_2a_YSH6000|+|619..1836|int|-|integrase
Length=405

 Score =  651 bits (2462),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 393/400 (99%), Positives = 398/400 (99%), Gaps = 0/400 (0%)

Query  1    MAVLTDTKARHIKPDDKPLPHGGITGLTLHPSSVKGRGKWVFRYVSPVTQKRRNAGLGTY  60
            MAVLTDTKARHIKPDDKPLPHGGITGLTLHPSSVKGRGKWVFRYVSPVTQKRRNAGLGTY
Sbjct  1    MAVLTDTKARHIKPDDKPLPHGGITGLTLHPSSVKGRGKWVFRYVSPVTQKRRNAGLGTY  60

Query  61   PEVSIAEAARTARIMREQLAAGDDPLEIKKAESEKVAIPTFADAARRVHAELSPGWENPK  120
            PEVSIAEAARTARIMREQLAAGDDPLEIKKAESEKV IPTFADAARRVHAELSPGWENPK
Sbjct  61   PEVSIAEAARTARIMREQLAAGDDPLEIKKAESEKVVIPTFADAARRVHAELSPGWENPK  120

Query  121  HVRQWLSTLENYAFPQLGAKTLDSITAADVAETLRPVWLTLSETASRVKQRIHVVMQWGW  180
            HVRQWLSTLENYAFPQLGAKTLDSITAADVAETLRPVWLTLSETASRVKQRIHVVMQWGW
Sbjct  121  HVRQWLSTLENYAFPQLGAKTLDSITAADVAETLRPVWLTLSETASRVKQRIHVVMQWGW  180

Query  181  AHGFCVANPVDVVDHLLPQQTRGRDEHQPAMPWRQLPLFVATSVYTDEPYNVTRALLLMV  240
            AHGFCVANPVDVVDHLLPQQTRGRDEHQPAMPWRQLPLFVATSVY+DEPYNVTRALLLMV
Sbjct  181  AHGFCVANPVDVVDHLLPQQTRGRDEHQPAMPWRQLPLFVATSVYSDEPYNVTRALLLMV  240

Query  241  ILTATRSGEARGMRWAEIDFHKRVWTIPAERMKARIQHRVPLSRQAIYILENIRGLHDEL  300
            ILTATRSGEARGMRWAEIDFHKRVWTIPAERMKAR+QHRVPLSRQAIYILENIRGLHDEL
Sbjct  241  ILTATRSGEARGMRWAEIDFHKRVWTIPAERMKARLQHRVPLSRQAIYILENIRGLHDEL  300

Query  301  VFPSPRKQQILSDMVLTSFLRKKKAVSDIPGRVATAHGFRSTFRDWCSEQGYSRDLAERA  360
            VFPSPRKQQILSDMVLTSFLRKKKAVSDIPGRVATAHGFRSTFRDWCSEQGYSRDLAERA
Sbjct  301  VFPSPRKQQILSDMVLTSFLRKKKAVSDIPGRVATAHGFRSTFRDWCSEQGYSRDLAERA  360

Query  361  LAHTLKNKVEAAYHRTDLLEQRVPMMQAWADYVMSQIVNK  400
            LAHTLKNKVEAAYHRTDLLEQRVPMMQAWADYVMSQ+ ++
Sbjct  361  LAHTLKNKVEAAYHRTDLLEQRVPMMQAWADYVMSQLAKN  400

11) Z1120 in NC_002655


> AF326777|1|G1|15808697|AAL08426.1|Shigella_flexneri_2a_YSH6000|+|619..1836|int|-|integrase
Length=405

 Score =  651 bits (2462),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 393/400 (99%), Positives = 398/400 (99%), Gaps = 0/400 (0%)

Query  1    MAVLTDTKARHIKPDDKPLPHGGITGLTLHPSSVKGRGKWVFRYVSPVTQKRRNAGLGTY  60
            MAVLTDTKARHIKPDDKPLPHGGITGLTLHPSSVKGRGKWVFRYVSPVTQKRRNAGLGTY
Sbjct  1    MAVLTDTKARHIKPDDKPLPHGGITGLTLHPSSVKGRGKWVFRYVSPVTQKRRNAGLGTY  60

Query  61   PEVSIAEAARTARIMREQLAAGDDPLEIKKAESEKVAIPTFADAARRVHAELSPGWENPK  120
            PEVSIAEAARTARIMREQLAAGDDPLEIKKAESEKV IPTFADAARRVHAELSPGWENPK
Sbjct  61   PEVSIAEAARTARIMREQLAAGDDPLEIKKAESEKVVIPTFADAARRVHAELSPGWENPK  120

Query  121  HVRQWLSTLENYAFPQLGAKTLDSITAADVAETLRPVWLTLSETASRVKQRIHVVMQWGW  180
            HVRQWLSTLENYAFPQLGAKTLDSITAADVAETLRPVWLTLSETASRVKQRIHVVMQWGW
Sbjct  121  HVRQWLSTLENYAFPQLGAKTLDSITAADVAETLRPVWLTLSETASRVKQRIHVVMQWGW  180

Query  181  AHGFCVANPVDVVDHLLPQQTRGRDEHQPAMPWRQLPLFVATSVYTDEPYNVTRALLLMV  240
            AHGFCVANPVDVVDHLLPQQTRGRDEHQPAMPWRQLPLFVATSVY+DEPYNVTRALLLMV
Sbjct  181  AHGFCVANPVDVVDHLLPQQTRGRDEHQPAMPWRQLPLFVATSVYSDEPYNVTRALLLMV  240

Query  241  ILTATRSGEARGMRWAEIDFHKRVWTIPAERMKARIQHRVPLSRQAIYILENIRGLHDEL  300
            ILTATRSGEARGMRWAEIDFHKRVWTIPAERMKAR+QHRVPLSRQAIYILENIRGLHDEL
Sbjct  241  ILTATRSGEARGMRWAEIDFHKRVWTIPAERMKARLQHRVPLSRQAIYILENIRGLHDEL  300

Query  301  VFPSPRKQQILSDMVLTSFLRKKKAVSDIPGRVATAHGFRSTFRDWCSEQGYSRDLAERA  360
            VFPSPRKQQILSDMVLTSFLRKKKAVSDIPGRVATAHGFRSTFRDWCSEQGYSRDLAERA
Sbjct  301  VFPSPRKQQILSDMVLTSFLRKKKAVSDIPGRVATAHGFRSTFRDWCSEQGYSRDLAERA  360

Query  361  LAHTLKNKVEAAYHRTDLLEQRVPMMQAWADYVMSQIVNK  400
            LAHTLKNKVEAAYHRTDLLEQRVPMMQAWADYVMSQ+ ++
Sbjct  361  LAHTLKNKVEAAYHRTDLLEQRVPMMQAWADYVMSQLAKN  400

12) Z1559 in NC_002655


> AF326777|1|G1|15808697|AAL08426.1|Shigella_flexneri_2a_YSH6000|+|619..1836|int|-|integrase
Length=405

 Score =  651 bits (2462),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 393/400 (99%), Positives = 398/400 (99%), Gaps = 0/400 (0%)

Query  1    MAVLTDTKARHIKPDDKPLPHGGITGLTLHPSSVKGRGKWVFRYVSPVTQKRRNAGLGTY  60
            MAVLTDTKARHIKPDDKPLPHGGITGLTLHPSSVKGRGKWVFRYVSPVTQKRRNAGLGTY
Sbjct  1    MAVLTDTKARHIKPDDKPLPHGGITGLTLHPSSVKGRGKWVFRYVSPVTQKRRNAGLGTY  60

Query  61   PEVSIAEAARTARIMREQLAAGDDPLEIKKAESEKVAIPTFADAARRVHAELSPGWENPK  120
            PEVSIAEAARTARIMREQLAAGDDPLEIKKAESEKV IPTFADAARRVHAELSPGWENPK
Sbjct  61   PEVSIAEAARTARIMREQLAAGDDPLEIKKAESEKVVIPTFADAARRVHAELSPGWENPK  120

Query  121  HVRQWLSTLENYAFPQLGAKTLDSITAADVAETLRPVWLTLSETASRVKQRIHVVMQWGW  180
            HVRQWLSTLENYAFPQLGAKTLDSITAADVAETLRPVWLTLSETASRVKQRIHVVMQWGW
Sbjct  121  HVRQWLSTLENYAFPQLGAKTLDSITAADVAETLRPVWLTLSETASRVKQRIHVVMQWGW  180

Query  181  AHGFCVANPVDVVDHLLPQQTRGRDEHQPAMPWRQLPLFVATSVYTDEPYNVTRALLLMV  240
            AHGFCVANPVDVVDHLLPQQTRGRDEHQPAMPWRQLPLFVATSVY+DEPYNVTRALLLMV
Sbjct  181  AHGFCVANPVDVVDHLLPQQTRGRDEHQPAMPWRQLPLFVATSVYSDEPYNVTRALLLMV  240

Query  241  ILTATRSGEARGMRWAEIDFHKRVWTIPAERMKARIQHRVPLSRQAIYILENIRGLHDEL  300
            ILTATRSGEARGMRWAEIDFHKRVWTIPAERMKAR+QHRVPLSRQAIYILENIRGLHDEL
Sbjct  241  ILTATRSGEARGMRWAEIDFHKRVWTIPAERMKARLQHRVPLSRQAIYILENIRGLHDEL  300

Query  301  VFPSPRKQQILSDMVLTSFLRKKKAVSDIPGRVATAHGFRSTFRDWCSEQGYSRDLAERA  360
            VFPSPRKQQILSDMVLTSFLRKKKAVSDIPGRVATAHGFRSTFRDWCSEQGYSRDLAERA
Sbjct  301  VFPSPRKQQILSDMVLTSFLRKKKAVSDIPGRVATAHGFRSTFRDWCSEQGYSRDLAERA  360

Query  361  LAHTLKNKVEAAYHRTDLLEQRVPMMQAWADYVMSQIVNK  400
            LAHTLKNKVEAAYHRTDLLEQRVPMMQAWADYVMSQ+ ++
Sbjct  361  LAHTLKNKVEAAYHRTDLLEQRVPMMQAWADYVMSQLAKN  400

13) ECs1299 in NC_002695


> AF326777|1|G1|15808697|AAL08426.1|Shigella_flexneri_2a_YSH6000|+|619..1836|int|-|integrase
Length=405

 Score =  651 bits (2462),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 393/400 (99%), Positives = 398/400 (99%), Gaps = 0/400 (0%)

Query  1    MAVLTDTKARHIKPDDKPLPHGGITGLTLHPSSVKGRGKWVFRYVSPVTQKRRNAGLGTY  60
            MAVLTDTKARHIKPDDKPLPHGGITGLTLHPSSVKGRGKWVFRYVSPVTQKRRNAGLGTY
Sbjct  1    MAVLTDTKARHIKPDDKPLPHGGITGLTLHPSSVKGRGKWVFRYVSPVTQKRRNAGLGTY  60

Query  61   PEVSIAEAARTARIMREQLAAGDDPLEIKKAESEKVAIPTFADAARRVHAELSPGWENPK  120
            PEVSIAEAARTARIMREQLAAGDDPLEIKKAESEKV IPTFADAARRVHAELSPGWENPK
Sbjct  61   PEVSIAEAARTARIMREQLAAGDDPLEIKKAESEKVVIPTFADAARRVHAELSPGWENPK  120

Query  121  HVRQWLSTLENYAFPQLGAKTLDSITAADVAETLRPVWLTLSETASRVKQRIHVVMQWGW  180
            HVRQWLSTLENYAFPQLGAKTLDSITAADVAETLRPVWLTLSETASRVKQRIHVVMQWGW
Sbjct  121  HVRQWLSTLENYAFPQLGAKTLDSITAADVAETLRPVWLTLSETASRVKQRIHVVMQWGW  180

Query  181  AHGFCVANPVDVVDHLLPQQTRGRDEHQPAMPWRQLPLFVATSVYTDEPYNVTRALLLMV  240
            AHGFCVANPVDVVDHLLPQQTRGRDEHQPAMPWRQLPLFVATSVY+DEPYNVTRALLLMV
Sbjct  181  AHGFCVANPVDVVDHLLPQQTRGRDEHQPAMPWRQLPLFVATSVYSDEPYNVTRALLLMV  240

Query  241  ILTATRSGEARGMRWAEIDFHKRVWTIPAERMKARIQHRVPLSRQAIYILENIRGLHDEL  300
            ILTATRSGEARGMRWAEIDFHKRVWTIPAERMKAR+QHRVPLSRQAIYILENIRGLHDEL
Sbjct  241  ILTATRSGEARGMRWAEIDFHKRVWTIPAERMKARLQHRVPLSRQAIYILENIRGLHDEL  300

Query  301  VFPSPRKQQILSDMVLTSFLRKKKAVSDIPGRVATAHGFRSTFRDWCSEQGYSRDLAERA  360
            VFPSPRKQQILSDMVLTSFLRKKKAVSDIPGRVATAHGFRSTFRDWCSEQGYSRDLAERA
Sbjct  301  VFPSPRKQQILSDMVLTSFLRKKKAVSDIPGRVATAHGFRSTFRDWCSEQGYSRDLAERA  360

Query  361  LAHTLKNKVEAAYHRTDLLEQRVPMMQAWADYVMSQIVNK  400
            LAHTLKNKVEAAYHRTDLLEQRVPMMQAWADYVMSQ+ ++
Sbjct  361  LAHTLKNKVEAAYHRTDLLEQRVPMMQAWADYVMSQLAKN  400

14) ECSP_1226 in NC_013008


> AF326777|1|G1|15808697|AAL08426.1|Shigella_flexneri_2a_YSH6000|+|619..1836|int|-|integrase
Length=405

 Score =  651 bits (2462),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 393/400 (99%), Positives = 398/400 (99%), Gaps = 0/400 (0%)

Query  1    MAVLTDTKARHIKPDDKPLPHGGITGLTLHPSSVKGRGKWVFRYVSPVTQKRRNAGLGTY  60
            MAVLTDTKARHIKPDDKPLPHGGITGLTLHPSSVKGRGKWVFRYVSPVTQKRRNAGLGTY
Sbjct  1    MAVLTDTKARHIKPDDKPLPHGGITGLTLHPSSVKGRGKWVFRYVSPVTQKRRNAGLGTY  60

Query  61   PEVSIAEAARTARIMREQLAAGDDPLEIKKAESEKVAIPTFADAARRVHAELSPGWENPK  120
            PEVSIAEAARTARIMREQLAAGDDPLEIKKAESEKV IPTFADAARRVHAELSPGWENPK
Sbjct  61   PEVSIAEAARTARIMREQLAAGDDPLEIKKAESEKVVIPTFADAARRVHAELSPGWENPK  120

Query  121  HVRQWLSTLENYAFPQLGAKTLDSITAADVAETLRPVWLTLSETASRVKQRIHVVMQWGW  180
            HVRQWLSTLENYAFPQLGAKTLDSITAADVAETLRPVWLTLSETASRVKQRIHVVMQWGW
Sbjct  121  HVRQWLSTLENYAFPQLGAKTLDSITAADVAETLRPVWLTLSETASRVKQRIHVVMQWGW  180

Query  181  AHGFCVANPVDVVDHLLPQQTRGRDEHQPAMPWRQLPLFVATSVYTDEPYNVTRALLLMV  240
            AHGFCVANPVDVVDHLLPQQTRGRDEHQPAMPWRQLPLFVATSVY+DEPYNVTRALLLMV
Sbjct  181  AHGFCVANPVDVVDHLLPQQTRGRDEHQPAMPWRQLPLFVATSVYSDEPYNVTRALLLMV  240

Query  241  ILTATRSGEARGMRWAEIDFHKRVWTIPAERMKARIQHRVPLSRQAIYILENIRGLHDEL  300
            ILTATRSGEARGMRWAEIDFHKRVWTIPAERMKAR+QHRVPLSRQAIYILENIRGLHDEL
Sbjct  241  ILTATRSGEARGMRWAEIDFHKRVWTIPAERMKARLQHRVPLSRQAIYILENIRGLHDEL  300

Query  301  VFPSPRKQQILSDMVLTSFLRKKKAVSDIPGRVATAHGFRSTFRDWCSEQGYSRDLAERA  360
            VFPSPRKQQILSDMVLTSFLRKKKAVSDIPGRVATAHGFRSTFRDWCSEQGYSRDLAERA
Sbjct  301  VFPSPRKQQILSDMVLTSFLRKKKAVSDIPGRVATAHGFRSTFRDWCSEQGYSRDLAERA  360

Query  361  LAHTLKNKVEAAYHRTDLLEQRVPMMQAWADYVMSQIVNK  400
            LAHTLKNKVEAAYHRTDLLEQRVPMMQAWADYVMSQ+ ++
Sbjct  361  LAHTLKNKVEAAYHRTDLLEQRVPMMQAWADYVMSQLAKN  400

15) ECO26_1259 in NC_013361


> AF326777|1|G1|15808697|AAL08426.1|Shigella_flexneri_2a_YSH6000|+|619..1836|int|-|integrase
Length=405

 Score =  651 bits (2462),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 393/400 (99%), Positives = 398/400 (99%), Gaps = 0/400 (0%)

Query  1    MAVLTDTKARHIKPDDKPLPHGGITGLTLHPSSVKGRGKWVFRYVSPVTQKRRNAGLGTY  60
            MAVLTDTKARHIKPDDKPLPHGGITGLTLHPSSVKGRGKWVFRYVSPVTQKRRNAGLGTY
Sbjct  1    MAVLTDTKARHIKPDDKPLPHGGITGLTLHPSSVKGRGKWVFRYVSPVTQKRRNAGLGTY  60

Query  61   PEVSIAEAARTARIMREQLAAGDDPLEIKKAESEKVAIPTFADAARRVHAELSPGWENPK  120
            PEVSIAEAARTARIMREQLAAGDDPLEIKKAESEKV IPTFADAARRVHAELSPGWENPK
Sbjct  61   PEVSIAEAARTARIMREQLAAGDDPLEIKKAESEKVVIPTFADAARRVHAELSPGWENPK  120

Query  121  HVRQWLSTLENYAFPQLGAKTLDSITAADVAETLRPVWLTLSETASRVKQRIHVVMQWGW  180
            HVRQWLSTLENYAFPQLGAKTLDSITAADVAETLRPVWLTLSETASRVKQRIHVVMQWGW
Sbjct  121  HVRQWLSTLENYAFPQLGAKTLDSITAADVAETLRPVWLTLSETASRVKQRIHVVMQWGW  180

Query  181  AHGFCVANPVDVVDHLLPQQTRGRDEHQPAMPWRQLPLFVATSVYTDEPYNVTRALLLMV  240
            AHGFCVANPVDVVDHLLPQQTRGRDEHQPAMPWRQLPLFVATSVY+DEPYNVTRALLLMV
Sbjct  181  AHGFCVANPVDVVDHLLPQQTRGRDEHQPAMPWRQLPLFVATSVYSDEPYNVTRALLLMV  240

Query  241  ILTATRSGEARGMRWAEIDFHKRVWTIPAERMKARIQHRVPLSRQAIYILENIRGLHDEL  300
            ILTATRSGEARGMRWAEIDFHKRVWTIPAERMKAR+QHRVPLSRQAIYILENIRGLHDEL
Sbjct  241  ILTATRSGEARGMRWAEIDFHKRVWTIPAERMKARLQHRVPLSRQAIYILENIRGLHDEL  300

Query  301  VFPSPRKQQILSDMVLTSFLRKKKAVSDIPGRVATAHGFRSTFRDWCSEQGYSRDLAERA  360
            VFPSPRKQQILSDMVLTSFLRKKKAVSDIPGRVATAHGFRSTFRDWCSEQGYSRDLAERA
Sbjct  301  VFPSPRKQQILSDMVLTSFLRKKKAVSDIPGRVATAHGFRSTFRDWCSEQGYSRDLAERA  360

Query  361  LAHTLKNKVEAAYHRTDLLEQRVPMMQAWADYVMSQIVNK  400
            LAHTLKNKVEAAYHRTDLLEQRVPMMQAWADYVMSQ+ ++
Sbjct  361  LAHTLKNKVEAAYHRTDLLEQRVPMMQAWADYVMSQLAKN  400

16) UM146_12475 in NC_017632


> AF326777|1|G1|15808697|AAL08426.1|Shigella_flexneri_2a_YSH6000|+|619..1836|int|-|integrase
Length=405

 Score =  651 bits (2460),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 394/400 (99%), Positives = 398/400 (99%), Gaps = 0/400 (0%)

Query  1    MAVLTDTKARHIKPDDKPLPHGGITGLTLHPSSVKGRGKWVFRYVSLVTQKRRNAGLGTY  60
            MAVLTDTKARHIKPDDKPLPHGGITGLTLHPSSVKGRGKWVFRYVS VTQKRRNAGLGTY
Sbjct  1    MAVLTDTKARHIKPDDKPLPHGGITGLTLHPSSVKGRGKWVFRYVSPVTQKRRNAGLGTY  60

Query  61   PEVSIAEAARTARIMREQLAAGDDPLEIKKAESEKVVIPTFADAARRVHAELSPGWENPK  120
            PEVSIAEAARTARIMREQLAAGDDPLEIKKAESEKVVIPTFADAARRVHAELSPGWENPK
Sbjct  61   PEVSIAEAARTARIMREQLAAGDDPLEIKKAESEKVVIPTFADAARRVHAELSPGWENPK  120

Query  121  HVRQWLSTLENYAFPQLGAKTLDSITAADVAETLRPVWLTLSETASRVKQRIHVVMQWGW  180
            HVRQWLSTLENYAFPQLGAKTLDSITAADVAETLRPVWLTLSETASRVKQRIHVVMQWGW
Sbjct  121  HVRQWLSTLENYAFPQLGAKTLDSITAADVAETLRPVWLTLSETASRVKQRIHVVMQWGW  180

Query  181  AHGFCVANPVDVVDHLLPQQTRGRDEHQPAMPWRQLPLFVATSVYTDEPYNVTRALLLMV  240
            AHGFCVANPVDVVDHLLPQQTRGRDEHQPAMPWRQLPLFVATSVY+DEPYNVTRALLLMV
Sbjct  181  AHGFCVANPVDVVDHLLPQQTRGRDEHQPAMPWRQLPLFVATSVYSDEPYNVTRALLLMV  240

Query  241  ILTATRSGEARGMRWAEIDFHKRVWTIPAERMKARLQHRVPLSRQAIYILENIRGLHDEL  300
            ILTATRSGEARGMRWAEIDFHKRVWTIPAERMKARLQHRVPLSRQAIYILENIRGLHDEL
Sbjct  241  ILTATRSGEARGMRWAEIDFHKRVWTIPAERMKARLQHRVPLSRQAIYILENIRGLHDEL  300

Query  301  VFPSPRKQQILSDMVLTSFLRKKKAVSDIPGRVATAHGFRSTFRDWCSEQGYSRDLAERA  360
            VFPSPRKQQILSDMVLTSFLRKKKAVSDIPGRVATAHGFRSTFRDWCSEQGYSRDLAERA
Sbjct  301  VFPSPRKQQILSDMVLTSFLRKKKAVSDIPGRVATAHGFRSTFRDWCSEQGYSRDLAERA  360

Query  361  LAHTLKNKVEAAYHRTDLLEQRVPMMQAWADYVMSQIVNK  400
            LAHTLKNKVEAAYHRTDLLEQRVPMMQAWADYVMSQ+ ++
Sbjct  361  LAHTLKNKVEAAYHRTDLLEQRVPMMQAWADYVMSQLAKN  400

17) UTI89_C1089 in NC_007946


> AF326777|1|G1|15808697|AAL08426.1|Shigella_flexneri_2a_YSH6000|+|619..1836|int|-|integrase
Length=405

 Score =  651 bits (2460),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 394/400 (99%), Positives = 398/400 (99%), Gaps = 0/400 (0%)

Query  1    MAVLTDTKARHIKPDDKPLPHGGITGLTLHPSSVKGRGKWVFRYVSLVTQKRRNAGLGTY  60
            MAVLTDTKARHIKPDDKPLPHGGITGLTLHPSSVKGRGKWVFRYVS VTQKRRNAGLGTY
Sbjct  1    MAVLTDTKARHIKPDDKPLPHGGITGLTLHPSSVKGRGKWVFRYVSPVTQKRRNAGLGTY  60

Query  61   PEVSIAEAARTARIMREQLAAGDDPLEIKKAESEKVVIPTFADAARRVHAELSPGWENPK  120
            PEVSIAEAARTARIMREQLAAGDDPLEIKKAESEKVVIPTFADAARRVHAELSPGWENPK
Sbjct  61   PEVSIAEAARTARIMREQLAAGDDPLEIKKAESEKVVIPTFADAARRVHAELSPGWENPK  120

Query  121  HVRQWLSTLENYAFPQLGAKTLDSITAADVAETLRPVWLTLSETASRVKQRIHVVMQWGW  180
            HVRQWLSTLENYAFPQLGAKTLDSITAADVAETLRPVWLTLSETASRVKQRIHVVMQWGW
Sbjct  121  HVRQWLSTLENYAFPQLGAKTLDSITAADVAETLRPVWLTLSETASRVKQRIHVVMQWGW  180

Query  181  AHGFCVANPVDVVDHLLPQQTRGRDEHQPAMPWRQLPLFVATSVYTDEPYNVTRALLLMV  240
            AHGFCVANPVDVVDHLLPQQTRGRDEHQPAMPWRQLPLFVATSVY+DEPYNVTRALLLMV
Sbjct  181  AHGFCVANPVDVVDHLLPQQTRGRDEHQPAMPWRQLPLFVATSVYSDEPYNVTRALLLMV  240

Query  241  ILTATRSGEARGMRWAEIDFHKRVWTIPAERMKARLQHRVPLSRQAIYILENIRGLHDEL  300
            ILTATRSGEARGMRWAEIDFHKRVWTIPAERMKARLQHRVPLSRQAIYILENIRGLHDEL
Sbjct  241  ILTATRSGEARGMRWAEIDFHKRVWTIPAERMKARLQHRVPLSRQAIYILENIRGLHDEL  300

Query  301  VFPSPRKQQILSDMVLTSFLRKKKAVSDIPGRVATAHGFRSTFRDWCSEQGYSRDLAERA  360
            VFPSPRKQQILSDMVLTSFLRKKKAVSDIPGRVATAHGFRSTFRDWCSEQGYSRDLAERA
Sbjct  301  VFPSPRKQQILSDMVLTSFLRKKKAVSDIPGRVATAHGFRSTFRDWCSEQGYSRDLAERA  360

Query  361  LAHTLKNKVEAAYHRTDLLEQRVPMMQAWADYVMSQIVNK  400
            LAHTLKNKVEAAYHRTDLLEQRVPMMQAWADYVMSQ+ ++
Sbjct  361  LAHTLKNKVEAAYHRTDLLEQRVPMMQAWADYVMSQLAKN  400

18) CDCO157_1245 in NC_017906


> AF326777|1|G1|15808697|AAL08426.1|Shigella_flexneri_2a_YSH6000|+|619..1836|int|-|integrase
Length=405

 Score =  651 bits (2462),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 393/400 (99%), Positives = 398/400 (99%), Gaps = 0/400 (0%)

Query  1    MAVLTDTKARHIKPDDKPLPHGGITGLTLHPSSVKGRGKWVFRYVSPVTQKRRNAGLGTY  60
            MAVLTDTKARHIKPDDKPLPHGGITGLTLHPSSVKGRGKWVFRYVSPVTQKRRNAGLGTY
Sbjct  1    MAVLTDTKARHIKPDDKPLPHGGITGLTLHPSSVKGRGKWVFRYVSPVTQKRRNAGLGTY  60

Query  61   PEVSIAEAARTARIMREQLAAGDDPLEIKKAESEKVAIPTFADAARRVHAELSPGWENPK  120
            PEVSIAEAARTARIMREQLAAGDDPLEIKKAESEKV IPTFADAARRVHAELSPGWENPK
Sbjct  61   PEVSIAEAARTARIMREQLAAGDDPLEIKKAESEKVVIPTFADAARRVHAELSPGWENPK  120

Query  121  HVRQWLSTLENYAFPQLGAKTLDSITAADVAETLRPVWLTLSETASRVKQRIHVVMQWGW  180
            HVRQWLSTLENYAFPQLGAKTLDSITAADVAETLRPVWLTLSETASRVKQRIHVVMQWGW
Sbjct  121  HVRQWLSTLENYAFPQLGAKTLDSITAADVAETLRPVWLTLSETASRVKQRIHVVMQWGW  180

Query  181  AHGFCVANPVDVVDHLLPQQTRGRDEHQPAMPWRQLPLFVATSVYTDEPYNVTRALLLMV  240
            AHGFCVANPVDVVDHLLPQQTRGRDEHQPAMPWRQLPLFVATSVY+DEPYNVTRALLLMV
Sbjct  181  AHGFCVANPVDVVDHLLPQQTRGRDEHQPAMPWRQLPLFVATSVYSDEPYNVTRALLLMV  240

Query  241  ILTATRSGEARGMRWAEIDFHKRVWTIPAERMKARIQHRVPLSRQAIYILENIRGLHDEL  300
            ILTATRSGEARGMRWAEIDFHKRVWTIPAERMKAR+QHRVPLSRQAIYILENIRGLHDEL
Sbjct  241  ILTATRSGEARGMRWAEIDFHKRVWTIPAERMKARLQHRVPLSRQAIYILENIRGLHDEL  300

Query  301  VFPSPRKQQILSDMVLTSFLRKKKAVSDIPGRVATAHGFRSTFRDWCSEQGYSRDLAERA  360
            VFPSPRKQQILSDMVLTSFLRKKKAVSDIPGRVATAHGFRSTFRDWCSEQGYSRDLAERA
Sbjct  301  VFPSPRKQQILSDMVLTSFLRKKKAVSDIPGRVATAHGFRSTFRDWCSEQGYSRDLAERA  360

Query  361  LAHTLKNKVEAAYHRTDLLEQRVPMMQAWADYVMSQIVNK  400
            LAHTLKNKVEAAYHRTDLLEQRVPMMQAWADYVMSQ+ ++
Sbjct  361  LAHTLKNKVEAAYHRTDLLEQRVPMMQAWADYVMSQLAKN  400

19) UMNK88_1178 in NC_017641


> AF326777|1|G1|15808697|AAL08426.1|Shigella_flexneri_2a_YSH6000|+|619..1836|int|-|integrase
Length=405

 Score =  649 bits (2455),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 392/400 (98%), Positives = 397/400 (99%), Gaps = 0/400 (0%)

Query  1    MAVLTDTKARHIKPDDKPLPHGGITGLTLHPSSVKGRGKWVFRYVSPVTQKRRNAGLGTY  60
            MAVLTDTKARHIKPDDKPLPHGGITGLTLHPSSVKGRGKWVFRYVSPVTQKRRNAGLGTY
Sbjct  1    MAVLTDTKARHIKPDDKPLPHGGITGLTLHPSSVKGRGKWVFRYVSPVTQKRRNAGLGTY  60

Query  61   PEVSIAEAARTARIMREQLAAGDDPLEIKKAESEKVAIPTFADAARRVHAELSPGWENPK  120
            PEVSIAEAARTARIMREQLAAGDDPLEIKKAESEKV IPTFADAARRVHAELSPGWENPK
Sbjct  61   PEVSIAEAARTARIMREQLAAGDDPLEIKKAESEKVVIPTFADAARRVHAELSPGWENPK  120

Query  121  HVRQWLSTLENYAFPQLGAKTLDSITAADVAETLRPVWLTLSETASRVKQRIHVVMQWGW  180
            HVRQWLSTLENYAFPQLGAKTLDSITAADVAETLRPVWLTLSETASRVKQRIHVVMQWGW
Sbjct  121  HVRQWLSTLENYAFPQLGAKTLDSITAADVAETLRPVWLTLSETASRVKQRIHVVMQWGW  180

Query  181  AHGFCVANPVDVVDHLLPQQTRGRDEHQPAMPWRQLPLFVATSVYTDEPYNVTRALLLMV  240
            AHGFCVANPVDVVDHLLPQQTRGRDEHQPAMPWRQLPLFVATSVY+DEPYNVTRALLLMV
Sbjct  181  AHGFCVANPVDVVDHLLPQQTRGRDEHQPAMPWRQLPLFVATSVYSDEPYNVTRALLLMV  240

Query  241  ILTATRSGEARGMRWAEIDFHKRVWTIPAERMKARIQHRVPLSRQAIYILENIRGLHDEL  300
            ILTATRSGEARGMRWAEIDFHKRVWTIPAERMKAR+QHRVPLSRQAIYILENIRGLHDEL
Sbjct  241  ILTATRSGEARGMRWAEIDFHKRVWTIPAERMKARLQHRVPLSRQAIYILENIRGLHDEL  300

Query  301  VFPSPRKQQILSDMVLTSFLRKKKAGSDIPGRVATAHGFRSTFRDWCSEQGYSRDLAERA  360
            VFPSPRKQQILSDMVLTSFLRKKKA SDIPGRVATAHGFRSTFRDWCSEQGYSRDLAERA
Sbjct  301  VFPSPRKQQILSDMVLTSFLRKKKAVSDIPGRVATAHGFRSTFRDWCSEQGYSRDLAERA  360

Query  361  LAHTLKNKVEAAYHRTDLLEQRVPMMQAWADYVMSQIVNK  400
            LAHTLKNKVEAAYHRTDLLEQRVPMMQAWADYVMSQ+ ++
Sbjct  361  LAHTLKNKVEAAYHRTDLLEQRVPMMQAWADYVMSQLAKN  400

20) EcSMS35_2277 in NC_010498


> AF326777|1|G1|15808697|AAL08426.1|Shigella_flexneri_2a_YSH6000|+|619..1836|int|-|integrase
Length=405

 Score =  648 bits (2451),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 387/402 (97%), Positives = 398/402 (99%), Gaps = 0/402 (0%)

Query  1    MAVLTDTKARHIKPDDKPLPHGGITGLTLHPSSVKGRGKWVFRYVSPVTQKRRNAGLGTY  60
            MAVLTDTKARHIKPDDKPLPHGGITGLTLHPSSVKGRGKWVFRYVSPVTQKRRNAGLGTY
Sbjct  1    MAVLTDTKARHIKPDDKPLPHGGITGLTLHPSSVKGRGKWVFRYVSPVTQKRRNAGLGTY  60

Query  61   PEVSIAEAARTARIMREQLAAGDDPLEIKKAEAEKVVIPTFADAARRVHAELSPGWENPK  120
            PEVSIAEAARTARIMREQLAAGDDPLEIKKAE+EKVVIPTFADAARRVHAELSPGWENPK
Sbjct  61   PEVSIAEAARTARIMREQLAAGDDPLEIKKAESEKVVIPTFADAARRVHAELSPGWENPK  120

Query  121  HVRQWLSTLENYAFPQLGAKTLDSITAADVAETLRPVWLTLSETASRVKQRIHVVMQWGW  180
            HVRQWLSTLENYAFPQLGAKTLDSITAADVAETLRPVWLTLSETASRVKQRIHVVMQWGW
Sbjct  121  HVRQWLSTLENYAFPQLGAKTLDSITAADVAETLRPVWLTLSETASRVKQRIHVVMQWGW  180

Query  181  AHGFCVANPVDVVDHLLPQQSRGRDEHQPAMPWRQLPLFVATSVYTDEPYNVTRALLLMV  240
            AHGFCVANPVDVVDHLLPQQ+RGRDEHQPAMPWRQLPLFVATSVY+DEPYNVTRALLLMV
Sbjct  181  AHGFCVANPVDVVDHLLPQQTRGRDEHQPAMPWRQLPLFVATSVYSDEPYNVTRALLLMV  240

Query  241  ILTATRSGEARGMRWAEIDFHKRIWTIPAERMKARIQHRVPLSRQAIHVLENIRGLHDEL  300
            ILTATRSGEARGMRWAEIDFHKR+WTIPAERMKAR+QHRVPLSRQAI +LENIRGLHDEL
Sbjct  241  ILTATRSGEARGMRWAEIDFHKRVWTIPAERMKARLQHRVPLSRQAIYILENIRGLHDEL  300

Query  301  VFPSPRKQQILSDMVLTSFLRKKKAISDIPGRVATAHGFRSTFRDWCSEQGYSRDLAERA  360
            VFPSPRKQQILSDMVLTSFLRKKKA+SDIPGRVATAHGFRSTFRDWCSEQGYSRDLAERA
Sbjct  301  VFPSPRKQQILSDMVLTSFLRKKKAVSDIPGRVATAHGFRSTFRDWCSEQGYSRDLAERA  360

Query  361  LAHTLKNKVEAAYHRTDLLDQRIPMMQAWADYVMSQIMENQR  402
            LAHTLKNKVEAAYHRTDLL+QR+PMMQAWADYVMSQ+  N +
Sbjct  361  LAHTLKNKVEAAYHRTDLLEQRVPMMQAWADYVMSQLAKNTK  402

21) O3M_15820 in NC_018650


> AF326777|1|G1|15808697|AAL08426.1|Shigella_flexneri_2a_YSH6000|+|619..1836|int|-|integrase
Length=405

 Score =  637 bits (2408),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 397/405 (99%), Positives = 404/405 (99%), Gaps = 0/405 (0%)

Query  1    MAVLTDTKARHIKPDDKPLPHGGITGLTLHPSSVKGRGKWVFRYVSPVTQKRRNAGLGTY  60
            MAVLTDTKARHIKPDDKPLPHGGITGLTLHPSSVKGRGKWVFRYVSPVTQKRRNAGLGTY
Sbjct  1    MAVLTDTKARHIKPDDKPLPHGGITGLTLHPSSVKGRGKWVFRYVSPVTQKRRNAGLGTY  60

Query  61   PEVSiaeaaraarimreQLAAGDDPLEIKKAEAEKVVIPTFADAARRVHAELSPGWENPK  120
            PEVSIAEAAR+ARIMREQLAAGDDPLEIKKAE+EKVVIPTFADAARRVHAELSPGWENPK
Sbjct  61   PEVSIAEAARTARIMREQLAAGDDPLEIKKAESEKVVIPTFADAARRVHAELSPGWENPK  120

Query  121  HVRQWLSTLENYAFPQLGAKTLDSITAADVAETLRPVWLTLSETASRVKQRIHVVMQWGW  180
            HVRQWLSTLENYAFPQLGAKTLDSITAADVAETLRPVWLTLSETASRVKQRIHVVMQWGW
Sbjct  121  HVRQWLSTLENYAFPQLGAKTLDSITAADVAETLRPVWLTLSETASRVKQRIHVVMQWGW  180

Query  181  AHGFCVANPVDVVDHLLPHQTRGRDEHQPAMPWRQLPLFVATSVYTDEPYNVTRALLLMV  240
            AHGFCVANPVDVVDHLLP+QTRGRDEHQPAMPWRQLPLFVATSVY+DEPYNVTRALLLMV
Sbjct  181  AHGFCVANPVDVVDHLLPQQTRGRDEHQPAMPWRQLPLFVATSVYSDEPYNVTRALLLMV  240

Query  241  ILTATRSGEARGMRWAEIDFHKRIWTIPAERMKARIQHRVPLSRQAIHILENIRGLHDEL  300
            ILTATRSGEARGMRWAEIDFHKR+WTIPAERMKAR+QHRVPLSRQAI ILENIRGLHDEL
Sbjct  241  ILTATRSGEARGMRWAEIDFHKRVWTIPAERMKARLQHRVPLSRQAIYILENIRGLHDEL  300

Query  301  VFPSPRKQQILSDMVLTSFLRKKKAISDIPGRVATAHGFRSTFRDWCSEQGYSRDLAERA  360
            VFPSPRKQQILSDMVLTSFLRKKKA+SDIPGRVATAHGFRSTFRDWCSEQGYSRDLAERA
Sbjct  301  VFPSPRKQQILSDMVLTSFLRKKKAVSDIPGRVATAHGFRSTFRDWCSEQGYSRDLAERA  360

Query  361  LAHTLKNKVEAAYHRTDLLEQRVPMMQAWADYVMSQLAKNTKEFA  405
            LAHTLKNKVEAAYHRTDLLEQRVPMMQAWADYVMSQLAKNTKEFA
Sbjct  361  LAHTLKNKVEAAYHRTDLLEQRVPMMQAWADYVMSQLAKNTKEFA  405

22) O3O_09460 in NC_018661


> AF326777|1|G1|15808697|AAL08426.1|Shigella_flexneri_2a_YSH6000|+|619..1836|int|-|integrase
Length=405

 Score =  637 bits (2408),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 397/405 (99%), Positives = 404/405 (99%), Gaps = 0/405 (0%)

Query  1    MAVLTDTKARHIKPDDKPLPHGGITGLTLHPSSVKGRGKWVFRYVSPVTQKRRNAGLGTY  60
            MAVLTDTKARHIKPDDKPLPHGGITGLTLHPSSVKGRGKWVFRYVSPVTQKRRNAGLGTY
Sbjct  1    MAVLTDTKARHIKPDDKPLPHGGITGLTLHPSSVKGRGKWVFRYVSPVTQKRRNAGLGTY  60

Query  61   PEVSiaeaaraarimreQLAAGDDPLEIKKAEAEKVVIPTFADAARRVHAELSPGWENPK  120
            PEVSIAEAAR+ARIMREQLAAGDDPLEIKKAE+EKVVIPTFADAARRVHAELSPGWENPK
Sbjct  61   PEVSIAEAARTARIMREQLAAGDDPLEIKKAESEKVVIPTFADAARRVHAELSPGWENPK  120

Query  121  HVRQWLSTLENYAFPQLGAKTLDSITAADVAETLRPVWLTLSETASRVKQRIHVVMQWGW  180
            HVRQWLSTLENYAFPQLGAKTLDSITAADVAETLRPVWLTLSETASRVKQRIHVVMQWGW
Sbjct  121  HVRQWLSTLENYAFPQLGAKTLDSITAADVAETLRPVWLTLSETASRVKQRIHVVMQWGW  180

Query  181  AHGFCVANPVDVVDHLLPHQTRGRDEHQPAMPWRQLPLFVATSVYTDEPYNVTRALLLMV  240
            AHGFCVANPVDVVDHLLP+QTRGRDEHQPAMPWRQLPLFVATSVY+DEPYNVTRALLLMV
Sbjct  181  AHGFCVANPVDVVDHLLPQQTRGRDEHQPAMPWRQLPLFVATSVYSDEPYNVTRALLLMV  240

Query  241  ILTATRSGEARGMRWAEIDFHKRIWTIPAERMKARIQHRVPLSRQAIHILENIRGLHDEL  300
            ILTATRSGEARGMRWAEIDFHKR+WTIPAERMKAR+QHRVPLSRQAI ILENIRGLHDEL
Sbjct  241  ILTATRSGEARGMRWAEIDFHKRVWTIPAERMKARLQHRVPLSRQAIYILENIRGLHDEL  300

Query  301  VFPSPRKQQILSDMVLTSFLRKKKAISDIPGRVATAHGFRSTFRDWCSEQGYSRDLAERA  360
            VFPSPRKQQILSDMVLTSFLRKKKA+SDIPGRVATAHGFRSTFRDWCSEQGYSRDLAERA
Sbjct  301  VFPSPRKQQILSDMVLTSFLRKKKAVSDIPGRVATAHGFRSTFRDWCSEQGYSRDLAERA  360

Query  361  LAHTLKNKVEAAYHRTDLLEQRVPMMQAWADYVMSQLAKNTKEFA  405
            LAHTLKNKVEAAYHRTDLLEQRVPMMQAWADYVMSQLAKNTKEFA
Sbjct  361  LAHTLKNKVEAAYHRTDLLEQRVPMMQAWADYVMSQLAKNTKEFA  405

23) O3K_15835 in NC_018658


> AF326777|1|G1|15808697|AAL08426.1|Shigella_flexneri_2a_YSH6000|+|619..1836|int|-|integrase
Length=405

 Score =  637 bits (2408),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 397/405 (99%), Positives = 404/405 (99%), Gaps = 0/405 (0%)

Query  1    MAVLTDTKARHIKPDDKPLPHGGITGLTLHPSSVKGRGKWVFRYVSPVTQKRRNAGLGTY  60
            MAVLTDTKARHIKPDDKPLPHGGITGLTLHPSSVKGRGKWVFRYVSPVTQKRRNAGLGTY
Sbjct  1    MAVLTDTKARHIKPDDKPLPHGGITGLTLHPSSVKGRGKWVFRYVSPVTQKRRNAGLGTY  60

Query  61   PEVSiaeaaraarimreQLAAGDDPLEIKKAEAEKVVIPTFADAARRVHAELSPGWENPK  120
            PEVSIAEAAR+ARIMREQLAAGDDPLEIKKAE+EKVVIPTFADAARRVHAELSPGWENPK
Sbjct  61   PEVSIAEAARTARIMREQLAAGDDPLEIKKAESEKVVIPTFADAARRVHAELSPGWENPK  120

Query  121  HVRQWLSTLENYAFPQLGAKTLDSITAADVAETLRPVWLTLSETASRVKQRIHVVMQWGW  180
            HVRQWLSTLENYAFPQLGAKTLDSITAADVAETLRPVWLTLSETASRVKQRIHVVMQWGW
Sbjct  121  HVRQWLSTLENYAFPQLGAKTLDSITAADVAETLRPVWLTLSETASRVKQRIHVVMQWGW  180

Query  181  AHGFCVANPVDVVDHLLPHQTRGRDEHQPAMPWRQLPLFVATSVYTDEPYNVTRALLLMV  240
            AHGFCVANPVDVVDHLLP+QTRGRDEHQPAMPWRQLPLFVATSVY+DEPYNVTRALLLMV
Sbjct  181  AHGFCVANPVDVVDHLLPQQTRGRDEHQPAMPWRQLPLFVATSVYSDEPYNVTRALLLMV  240

Query  241  ILTATRSGEARGMRWAEIDFHKRIWTIPAERMKARIQHRVPLSRQAIHILENIRGLHDEL  300
            ILTATRSGEARGMRWAEIDFHKR+WTIPAERMKAR+QHRVPLSRQAI ILENIRGLHDEL
Sbjct  241  ILTATRSGEARGMRWAEIDFHKRVWTIPAERMKARLQHRVPLSRQAIYILENIRGLHDEL  300

Query  301  VFPSPRKQQILSDMVLTSFLRKKKAISDIPGRVATAHGFRSTFRDWCSEQGYSRDLAERA  360
            VFPSPRKQQILSDMVLTSFLRKKKA+SDIPGRVATAHGFRSTFRDWCSEQGYSRDLAERA
Sbjct  301  VFPSPRKQQILSDMVLTSFLRKKKAVSDIPGRVATAHGFRSTFRDWCSEQGYSRDLAERA  360

Query  361  LAHTLKNKVEAAYHRTDLLEQRVPMMQAWADYVMSQLAKNTKEFA  405
            LAHTLKNKVEAAYHRTDLLEQRVPMMQAWADYVMSQLAKNTKEFA
Sbjct  361  LAHTLKNKVEAAYHRTDLLEQRVPMMQAWADYVMSQLAKNTKEFA  405

24) AHML_07080 in NC_021290


> AF326777|1|G1|15808697|AAL08426.1|Shigella_flexneri_2a_YSH6000|+|619..1836|int|-|integrase
Length=405

 Score =  474 bits (1788),  Expect = 2e-135, Method: Compositional matrix adjust.
 Identities = 265/402 (66%), Positives = 336/402 (84%), Gaps = 2/402 (0%)

Query  1    MATLTDTKARNLKPEEKPLPHGGVTGLALHPSTIKGRGKWVLRYVSPITGKRRNAGLGSY  60
            MA LTDTKAR++KP++KPLPHGG+TGL+LHPS++KGRGKWV+RYVSP+T KRRNAGLG+Y
Sbjct  1    MAVLTDTKARHIKPDDKPLPHGGITGLTLHPSSVKGRGKWVFRYVSPVTQKRRNAGLGTY  60

Query  61   PEVSVADAGNQARLMREQLSQGLDPLEMKREEATKPTIPTVEIAARQVHQQLLPGWRNPK  120
            PEVS+A+A+  AR+MREQL+ G DPLE+K+ E+ K  IPT   AAR+VH +L PGW NPK
Sbjct  61   PEVSIAEAARTARIMREQLAAGDDPLEIKKAESEKVVIPTFADAARRVHAELSPGWENPK  120

Query  121  HGKQWISTLEQYAFPVVGQQPIDSITPAQIARVLQPIWLTIPETATRVKQRLHAVMAWAW  180
            H +QW+STLE+YAFP +G + +DSIT+A++A  L+P+WLT++ETA+RVKQR+H VM W+W
Sbjct  121  HVRQWLSTLENYAFPQLGAKTLDSITAADVAETLRPVWLTLSETASRVKQRIHVVMQWGW  180

Query  181  ANGFCSANPVDVVDKLLPQQPSKTIRTQHQPAMDWRLLPEFYQEHLANSERFDVSRALLS  240
            A+GFC ANPVDVVD LLPQQ     R +HQPAM WR LP F    + + E ++V+RALL 
Sbjct  181  AHGFCVANPVDVVDHLLPQQTRG--RDEHQPAMPWRQLPLFVATSVYSDEPYNVTRALLL  238

Query  241  FVILTACRSGEARNMRWEELDLNTAIWTIPADRMKTQVTHRVPLSLQAITVLEKVEGLHS  300
             VILTA RSGEAR MRW E+D++  +WTIPA+RMK+++ HRVPLS QAI +LE++ GLH 
Sbjct  239  MVILTATRSGEARGMRWAEIDFHKRVWTIPAERMKARLQHRVPLSRQAIYILENIRGLHD  298

Query  301  EWVFPSPRKQIPLTDMAMTSLLRRLDAQSTTPGRVATAHGFRSSFRDWCSEQGYARDLAE  360
            E VFPSPRKQ  L+DM +TS+LR+  A S  PGRVATAHGFRS+FRDWCSEQGY+RDLAE
Sbjct  299  ELVFPSPRKQQILSDMVLTSFLRKKKAVSDIPGRVATAHGFRSTFRDWCSEQGYSRDLAE  358

Query  361  RALAHTVQNKVEAAYHRTDLLDQRRPMMDAWAEFVSGHLSAE  402
            RALAHT++NKVEAAYHRTDLL+QR PMM+AWA++V ++L+ +
Sbjct  359  RALAHTLKNKVEAAYHRTDLLEQRVPMMQAWADYVMSQLAKN  400

25) R2APBS1_2615 in NC_020541


> AF326777|1|G1|15808697|AAL08426.1|Shigella_flexneri_2a_YSH6000|+|619..1836|int|-|integrase
Length=405

 Score =  454 bits (1711),  Expect = 3e-129, Method: Compositional matrix adjust.
 Identities = 261/398 (66%), Positives = 330/398 (83%), Gaps = 5/398 (1%)

Query  1    MALLTDTKVRSVKPGGAPLAHGGVTGLTLHPSPSNKGQGKWVLRYVSPVTKKRRNAGLGS  60
            MA+LTDTK R +KP++ PL+HGG+TGLTLHPS S KG+GKWV+RYVSPVT+KRRNAGLG+
Sbjct  1    MAVLTDTKARHIKPDDKPLPHGGITGLTLHPS-SVKGRGKWVFRYVSPVTQKRRNAGLGT  59

Query  61   YPEVSIAEAAQQARFMREQIAHGKDPLETRAAEAAQPHLPKLKEAAKTLHKELAPGWKNP  120
            YPEVSIAEAA+ AR+MREQ+A G DPLE + AE+ +  +P + +AA+ +H EL+PGW NP
Sbjct  60   YPEVSIAEAARTARIMREQLAAGDDPLEIKKAESEKVVIPTFADAARRVHAELSPGWENP  119

Query  121  KHSQQWINTLTEYAFPLIGAMPLDQIQPRHIADVLRPIWLEKAETAGRVKQRLHAVMAWG  180
            KH +QW++TL +YAFP +GA  LD I + ++A+ LRP+WL  +ETA+RVKQR+H VM WG
Sbjct  120  KHVRQWLSTLENYAFPQLGAKTLDSITAADVAETLRPVWLTLSETASRVKQRIHVVMQWG  179

Query  181  WAHGFCQSNPVDVVNHLLPLQPGKTVRTQHQPAMPWTLIPAFVADHL--PQSLEVSRQLL  238
            WAHGFC +NPVDVV+HLLP Q     R +HQPAMPW  +P FVA  +   ++ +V+R LL
Sbjct  180  WAHGFCVANPVDVVDHLLPQQT--RGRDEHQPAMPWRQLPLFVATSVYSDEPYNVTRALL  237

Query  239  GFVILTAARSGEVRHMTWDEVDLDAKLWTVPAERMKAKLTHRVPLSKQAVALLKHQQGLH  298
              VILTA+RSGE R M W E+D++ ++WT+PAERMKA+L HRVPLS+QA+ +L + +GLH
Sbjct  238  LMVILTATRSGEARGMRWAEIDFHKRVWTIPAERMKARLQHRVPLSRQAIYILENIRGLH  297

Query  299  HTFVFPSVRKGVPLSDMVLTAFLRRAKAVSDVPGRVATAHGFRSSFRDWCSEKGYARDLA  358
            + +VFPS RK   LSDMVLT+FLR+ KAVSD+PGRVATAHGFRS+FRDWCSE+GY+RDLA
Sbjct  298  DELVFPSPRKQQILSDMVLTSFLRKKKAVSDIPGRVATAHGFRSTFRDWCSEQGYSRDLA  357

Query  359  ERALAHTVQNKVEAAYHRTDLLEQRRPLMQAWADFVTS  396
            ERALAHT++NKVEAAYHRTDLLEQR P+MQAWAD+V S
Sbjct  358  ERALAHTLKNKVEAAYHRTDLLEQRVPMMQAWADYVMS  395

26) C380_06325 in NC_018708


> AF326777|1|G1|15808697|AAL08426.1|Shigella_flexneri_2a_YSH6000|+|619..1836|int|-|integrase
Length=405

 Score =  453 bits (1708),  Expect = 6e-129, Method: Compositional matrix adjust.
 Identities = 255/400 (64%), Positives = 328/400 (82%), Gaps = 2/400 (0%)

Query  1    MATITDTKARNIKPSDTAIPHGSVTGLALHPSNLKGHGKWVLRYVSPVSGKRRNAGLGSY  60
            MA +TDTKAR+IKP D ++PHG++TGL+LHPS++KG+GKWV+RYVSPV+ KRRNAGLG+Y
Sbjct  1    MAVLTDTKARHIKPDDKPLPHGGITGLTLHPSSVKGRGKWVFRYVSPVTQKRRNAGLGTY  60

Query  61   PEISIAEVGKRATAMRIALAEGKDPLEEKAKLEDKPKIPTFKEAALNLHGDLLPGWKNPK  120
            PE+SIAE ++ A  MR  LA G DPLE K    +K  IPTF +AA  +H++L PGW NPK
Sbjct  61   PEVSIAEAARTARIMREQLAAGDDPLEIKKAESEKVVIPTFADAARRVHAELSPGWENPK  120

Query  121  HGRQWINTLEEYVFPRLGGKFLHEIQPGDVAEVLKPIWLTKAETASRVKQRIHAVIAWGW  180
            H RQW++TLE+Y FP+LG+K L+ I ++DVAE L+P+WLT +ETASRVKQRIH V+ WGW
Sbjct  121  HVRQWLSTLENYAFPQLGAKTLDSITAADVAETLRPVWLTLSETASRVKQRIHVVMQWGW  180

Query  181  AHGYCQSNPVDVVGHLLAQQPGKAVRTQHHPAMPWREIPKFVQEHLWQSTRPEVTRTMLE  240
            AHG+C +NPVDVV+HLL+QQ     R +H+PAMPWR++P FV   +      +VTR++L 
Sbjct  181  AHGFCVANPVDVVDHLLPQQT--RGRDEHQPAMPWRQLPLFVATSVYSDEPYNVTRALLL  238

Query  241  FVILTASRSGEARGMRWSELDLKNKVWTIPAERMKAKLPHRLPLSPRAMTLIERQKGQHE  300
             VILTA+RSGEARGMRW+E+D+ ++VWTIPAERMKA+L HR+PLS +A+ ++E  +G H+
Sbjct  239  MVILTATRSGEARGMRWAEIDFHKRVWTIPAERMKARLQHRVPLSRQAIYILENIRGLHD  298

Query  301  NLVFPSIRDRVELSDMALTSLLRKLKARSDTPGRVATTHGFRSSFRDWCSEMGYSRDLAE  360
            +LVFPS R +  LSDM LTS+LRK KA SD PGRVAT+HGFRS+FRDWCSE GYSRDLAE
Sbjct  299  ELVFPSPRKQQILSDMVLTSFLRKKKAVSDIPGRVATAHGFRSTFRDWCSEQGYSRDLAE  358

Query  361  RSLAHTIKDKVEAAYHRTDLLEQRREVMNAWAAFVSGKLS  400
            R+LAHT+K+KVEAAYHRTDLLEQR  +M+AWA +V ++L+
Sbjct  359  RALAHTLKNKVEAAYHRTDLLEQRVPMMQAWADYVMSQLA  398

27) DSC_11940 in NC_016147


> AF326777|1|G1|15808697|AAL08426.1|Shigella_flexneri_2a_YSH6000|+|619..1836|int|-|integrase
Length=405

 Score =  432 bits (1625),  Expect = 2e-122, Method: Compositional matrix adjust.
 Identities = 246/396 (63%), Positives = 318/396 (81%), Gaps = 3/396 (0%)

Query  6    MPLITDAKARSTGCGGQAVPHGGVTGLTLLPSATQKGQGKWVLRFVSPVTGKRRNAGLGS  65
            M+++TD+KAR    +++++PHGG+TGLTL PS+  KG+GKWV+R+VSPVT KRRNAGLG+
Sbjct  1    MAVLTDTKARHIKPDDKPLPHGGITGLTLHPSSV-KGRGKWVFRYVSPVTQKRRNAGLGT  59

Query  66   YPQVGIASAGRLAREMREQIAAGRDPLETKAANRAKPKTPTFQEAAEQLHGELKPGWKNP  125
            YP+V+IA A+R AR MREQ+AAG DPLE K A+  K   PTF +AA ++H+EL PGW NP
Sbjct  60   YPEVSIAEAARTARIMREQLAAGDDPLEIKKAESEKVVIPTFADAARRVHAELSPGWENP  119

Query  126  KHAQQWLNTLADYAFPRVGSLPIDEIQPRHIADVLRPIWLEKAETASRVKQRLHAVMAWG  185
            KH +QWL+TL +YAFP++G+  +D I + ++A+ LRP+WL  +ETASRVKQR+H VM WG
Sbjct  120  KHVRQWLSTLENYAFPQLGAKTLDSITAADVAETLRPVWLTLSETASRVKQRIHVVMQWG  179

Query  186  WAHGFNQANPVGVVTHLLPLQPGKAVRQEHQPAMPWATVPSFVQTELAGAGDLEVTRIAL  245
            WAHGF  ANPV+VV HLLP Q  ++ R+EHQPAMPW  +P FV T + +    +VTR  L
Sbjct  180  WAHGFCVANPVDVVDHLLP-QQTRG-RDEHQPAMPWRQLPLFVATSVYSDEPYNVTRALL  237

Query  246  LFLILNASRSGEVRGMTWNEVNLRVKQWTIPAARMKAKQAHRVPLSDQSVELLKRLEGLH  305
            L +IL A+RSGE RGM W E++++ + WTIPA RMKA+  HRVPLS Q++ +L  + GLH
Sbjct  238  LMVILTATRSGEARGMRWAEIDFHKRVWTIPAERMKARLQHRVPLSRQAIYILENIRGLH  297

Query  306  VELVFPSVQARSIMSDMTLTALLRRVNAASDTPGRVATAHGFRSSFRDWCSEKGYARDLA  365
             ELVFPS + + I+SDM LT++LR+ +A SD PGRVATAHGFRS+FRDWCSE+GY+RDLA
Sbjct  298  DELVFPSPRKQQILSDMVLTSFLRKKKAVSDIPGRVATAHGFRSTFRDWCSEQGYSRDLA  357

Query  366  ERALAHTVKDKVEAAYHRTDLLEQRRPMMQAWSDFV  401
            ERALAHT+K+KVEAAYHRTDLLEQR PMMQAW+D+V
Sbjct  358  ERALAHTLKNKVEAAYHRTDLLEQRVPMMQAWADYV  393

28) NH8B_1048 in NC_016002


> AF326777|1|G1|15808697|AAL08426.1|Shigella_flexneri_2a_YSH6000|+|619..1836|int|-|integrase
Length=405

 Score =  386 bits (1452),  Expect = 1e-108, Method: Compositional matrix adjust.
 Identities = 224/403 (56%), Positives = 306/403 (76%), Gaps = 9/403 (2%)

Query  1    MAVITDTKARNVKPSDKPIAHGGVTGLRLEPGSTKGTGKWTLRFISPVTGKRRDMGLGRY  60
            MAV+TDTKAR++KP DKP++HGG+TGL L+P+S KG GKW +R++SPVT KRR+ GLG Y
Sbjct  1    MAVLTDTKARHIKPDDKPLPHGGITGLTLHPSSVKGRGKWVFRYVSPVTQKRRNAGLGTY  60

Query  61   PDIGIADVGKTALEAREQIAKGVDPIEQRQTKVAAQRAELEALTFEQAARQVHIEQSPGW  120
            P+++IA+ ++TA   REQ+A G DP+E +  K  +++  +   TF +AAR+VH E SPGW
Sbjct  61   PEVSIAEAARTARIMREQLAAGDDPLEIK--KAESEKVVIP--TFADAARRVHAELSPGW  116

Query  121  KNPKHAAQWITTLETYVFPTLGKVKVADLTPKHFADALRPIWLEKPETASRTKQRCHAVM  180
             NPKH  QW++TLE Y FP LG   +  +T+ + A++LRP+WL  +ETASR KQR H VM
Sbjct  117  ENPKHVRQWLSTLENYAFPQLGAKTLDSITAADVAETLRPVWLTLSETASRVKQRIHVVM  176

Query  181  AWCWAHGKVAANPIDVIEHLLPKQIPT-EQHQPAMPWAKIPTYIKDHLKDRQPGDSTRAA  239
             W WAHG   ANP+DV++HLLP+Q    ++HQPAMPW ++P ++   +   +P + TRA 
Sbjct  177  QWGWAHGFCVANPVDVVDHLLPQQTRGRDEHQPAMPWRQLPLFVATSVYSDEPYNVTRAL  236

Query  240  LEFLILTAARSGAVRMMTWSEVNFDEAIWTIPPEAGRKTGVARRMPLSGRAIEILQQQRA  299
            L  +ILTA+RSG  R M W+E++F+  +WTIP+E   K+ + +R+PLS +AI IL++ R 
Sbjct  237  LLMVILTATRSGEARGMRWAEIDFHKRVWTIPAER-MKARLQHRVPLSRQAIYILENIR-  294

Query  300  IGLSDELVFPAPR-GGVLSDMTLTSLLRRTKAESETPGRVATAHGFRSAFRDWASEHGYS  358
             GL DELVFP+PR   +LSDM LTS+LR+ KA S+ PGRVATAHGFRS+FRDW SE+GYS
Sbjct  295  -GLHDELVFPSPRKQQILSDMVLTSFLRKKKAVSDIPGRVATAHGFRSTFRDWCSEQGYS  353

Query  359  RDLAERQLSHEISNKVEAAYHRTDLLEQRRPMVQSWTNFLTNE  401
            RDLAER L+H + NKVEAAYHRTDLLEQR PM+Q+W++++ ++
Sbjct  354  RDLAERALAHTLKNKVEAAYHRTDLLEQRVPMMQAWADYVMSQ  396

29) LHK_01534 in NC_012559


> AF326777|1|G1|15808697|AAL08426.1|Shigella_flexneri_2a_YSH6000|+|619..1836|int|-|integrase
Length=405

 Score =  313 bits (1172),  Expect = 1e-86, Method: Compositional matrix adjust.
 Identities = 192/402 (48%), Positives = 274/402 (69%), Gaps = 10/402 (2%)

Query  1    MAVLTDRQAANIRPTDKAKAHGGVVGLWLIPLKEKGTGRWIFRFTSPTSKKRRDLGLGKY  60
            MAVLTD +A +I+P DK+ +HGG+ GL L P   KG G+W+FR+ SP ++KRR+ GLG Y
Sbjct  1    MAVLTDTKARHIKPDDKPLPHGGITGLTLHPSSVKGRGKWVFRYVSPVTQKRRNAGLGTY  60

Query  61   PAITIKQAGELGEAARLLVLQGIDPIDHKReqeaaaeaaneRITFEQAAIHTHETLSPGW  120
            P ++I +A+  +   R  +  G DP++ K+ +      +    TF +AA + H  LSPGW
Sbjct  61   PEVSIAEAARTARIMREQLAAGDDPLEIKKAESEKVVIP----TFADAARRVHAELSPGW  116

Query  121  SNRHASADWINSLRRHVFPKIGDKPVADLVRRDFAAVLLPIWLVLPETAARVRQRMQTVM  180
             N     +W+++L    FP++G K +  +   D A  L P+WL L+ETA+RV+QR++ VM
Sbjct  117  ENPKHVRQWLSTLENYAFPQLGAKTLDSITAADVAETLRPVWLTLSETASRVKQRIHVVM  176

Query  181  EWCLARDLIAANQCDSALSRLLPKQPSKAEREEHHPAMPWRLLPAFVAAHLGEGRPVSVA  240
            +W  A+++  AN  D  + +LLP+Q     R+EH+PAMPWR LP FVA+ +  + P +V+
Sbjct  177  QWGWAHGFCVANPVD-VVDHLLPQQTR--GRDEHQPAMPWRQLPLFVATSVYSDEPYNVT  233

Query  241  RPMLEFLILTAARSGEVRGMVWDEVDLSAKVWTIPGERMKAGATHQVPLSDRAMAILRQQ  300
            R++L  +ILTA+RSGE RGM W E+D+  +VWTIP+ERMKA   H+VPLS +A+ IL + 
Sbjct  234  RALLLMVILTATRSGEARGMRWAEIDFHKRVWTIPAERMKARLQHRVPLSRQAIYILENI  293

Query  301  RERHPFSAMVFP-PNRGRVVSDMTLTRYLHEVDAPSDTEGRHATVHGFRSTFKDWAIEHG  359
            R  H    +VFP P + +++SDM LT +L+   A SD  GR AT HGFRSTF+DW  E+G
Sbjct  294  RGLH--DELVFPSPRKQQILSDMVLTSFLRKKKAVSDIPGRVATAHGFRSTFRDWCSEQG  351

Query  360  YPGELSEKALAHMIKNKVEAAYHRSSQLEQRRALMQAWADYV  401
            Y+ +L+E+ALAH +KNKVEAAYHR+  LEQR ++MQAWADYV
Sbjct  352  YSRDLAERALAHTLKNKVEAAYHRTDLLEQRVPMMQAWADYV  393

30) LHK_02463 in NC_012559


> AF326777|1|G1|15808697|AAL08426.1|Shigella_flexneri_2a_YSH6000|+|619..1836|int|-|integrase
Length=405

 Score =  282 bits (1054),  Expect = 2e-77, Method: Compositional matrix adjust.
 Identities = 168/347 (49%), Positives = 239/347 (69%), Gaps = 10/347 (2%)

Query  2    GLGSYPATSIKQAGESGEAARLLVLQGVDPIDHKREQEAAAKAASECLTFENAAIRTYET  61
            GLG+YP  SI +A+ ++   R  +  G DP++ K+ +      +    TF +AA R    
Sbjct  56   GLGTYPEVSIAEAARTARIMREQLAAGDDPLEIKKAESEKVVIP----TFADAARRVHAE  111

Query  62   LSPGWSNRHHGVDWINSLRRHVFPKIGARPVADLVRADFADVLQPIWLALPDTAGRVRRR  121
            LSPGW N  H  +W+++L    FP++GA+ +  +  AD A+ L+P+WL+L++TA+RV++R
Sbjct  112  LSPGWENPKHVRQWLSTLENYAFPQLGAKTLDSITAADVAETLRPVWLTLSETASRVKQR  171

Query  122  MHTVMEWCLARDLIAANQCDSALSRLLPKQPSKAEREEHHPAMPWRLLPAFVAAHLGDGK  181
            +H VM+W  A+++  AN  D  + +LLP+Q     R+EH+PAMPWR LP FVA+ +  + 
Sbjct  172  IHVVMQWGWAHGFCVANPVD-VVDHLLPQQTR--GRDEHQPAMPWRQLPLFVATSVYSDE  228

Query  182  RYSVIRPMLEFLILTAARSGEVRGMTWGEVDLKANIWTIPGERMKAGVTHQVPLSDRAIT  241
             Y+V R++L  +ILTA+RSGE RGM W+E+D+   +WTIP+ERMKA + H+VPLS +AI 
Sbjct  229  PYNVTRALLLMVILTATRSGEARGMRWAEIDFHKRVWTIPAERMKARLQHRVPLSRQAIY  288

Query  242  ILRQQREQHPLASLVFPAPR-GGVASDMTLTKYLRDVDAPSDTEGRPATAHGFRSTFKDW  300
            IL + R  H    LVFP+PR   + SDM LT +LR   A SD  GR ATAHGFRSTF+DW
Sbjct  289  ILENIRGLH--DELVFPSPRKQQILSDMVLTSFLRKKKAVSDIPGRVATAHGFRSTFRDW  346

Query  301  AIEHGYPGELSEKALAHTIKNKVEAAYHRSSQLEQRRELMQAWSEYV  347
              E+GY+ +L+E+ALAHT+KNKVEAAYHR+  LEQR  +MQAW++YV
Sbjct  347  CSEQGYSRDLAERALAHTLKNKVEAAYHRTDLLEQRVPMMQAWADYV  393

31) AZOLI_p10794 in NC_016585


> AF326777|1|G1|15808697|AAL08426.1|Shigella_flexneri_2a_YSH6000|+|619..1836|int|-|integrase
Length=405

 Score =  235 bits (876),  Expect = 3e-63, Method: Compositional matrix adjust.
 Identities = 171/388 (45%), Positives = 250/388 (65%), Gaps = 21/388 (5%)

Query  22   KPGRHADGNGLYLDVDESGAR-RWLLRIT--IHGRRRDIGLGSASLVTLAEARDAALEMR  78
            KP  H++  GL L+     +R +W++R    +  +RR+ GLG+ + V++AEA  +A  MR
Sbjct  17   KPLPHGGITGLTLHPSSVKGRGKWVFRYVSPVTQKRRNAGLGTYPEVSIAEAARTARIMR  76

Query  79   RVARAGGDPLAERKAA--RRVVPSFAEAARTCHEERKDGWKNGKHADQWLNTLETYAFPQ  136
                AG+DPL  +KA   + V+P+FA+AAR  H E   GW N KH  QWL+TLE YAFPQ
Sbjct  77   EQLAAGDDPLEIKKAESEKVVIPTFADAARRVHAELSPGWENPKHVRQWLSTLENYAFPQ  136

Query  137  LGTLTVDRIGTPEVRDVLLPIWLEKPETARRLRQRIGIVLDWAAAKGFRDGENPVRGVTK  196
            LG+ T+D I +++V + L P+WL  +ETA R++QRI +V++W+ A GF  + NPV  V  
Sbjct  137  LGAKTLDSITAADVAETLRPVWLTLSETASRVKQRIHVVMQWGWAHGFCVA-NPVDVVDH  195

Query  197  GLPKQ-KEAGGHFAALPYDDVPSFLTKLRGSNKAGPVVALAMEFLILTAVRSGEMRGAVW  255
             LP+Q +  + H +A+P  ++P F++    S+ +  V    +  +ILTA RSGE RG  W
Sbjct  196  LLPQQTRGRDEHQPAMPWRQLPLFVATSVYSDEPYNVTRALLLMVILTATRSGEARGMRW  255

Query  256  REFDLEGGLWTIPAERMKAGKPHVVPLAPRALQILQEARALARKPDDPEALVFEGAKPGK  315
             E+D++  +WTIPAERMKA   H VPL+ +A+ IL++ R+L       + LVF +++  +
Sbjct  256  AEIDFHKRVWTIPAERMKARLQHRVPLSRQAIYILENIRGL------HDELVFPSPRKQQ  309

Query  316  PMSDMTLTMLLRRMEV-------EATAHGFRSAFRDWTAETTNTPSDVAEMALAHTIKNK  368
             +SDM LT +LR+           ATAHGFRS+FRDW +E   +  D+AE ALAHT+KNK
Sbjct  310  ILSDMVLTSFLRKKKAVSDIPGRVATAHGFRSTFRDWCSEQGYS-RDLAERALAHTLKNK  368

Query  369  VEAAYRRGDLLEKRRVLMKAWASFCMRE  396
            VEAAY+R DLLE+R  +M+AWA + M +
Sbjct  369  VEAAYHRTDLLEQRVPMMQAWADYVMSQ  396

32) bgla_1g09080 in NC_015381


> AF326777|1|G1|15808697|AAL08426.1|Shigella_flexneri_2a_YSH6000|+|619..1836|int|-|integrase
Length=405

 Score =  231 bits (861),  Expect = 4e-62, Method: Compositional matrix adjust.
 Identities = 157/390 (41%), Positives = 252/390 (65%), Gaps = 28/390 (7%)

Query  25   GGVAGLALQVSPTGARS-WILR--ATVGGRRREIGLGSFSPQGLSLKEARARAQATRDEI  81
            GG++GL+L+ S+  +R+ W++R  + V  +RR+ GLG+++   +S+ EA   A+  R+++
Sbjct  22   GGITGLTLHPSSVKGRGKWVFRYVSPVTQKRRNAGLGTYP--EVSIAEAARTARIMREQL  79

Query  82   QGGTDPVLARKEAASRLRASQAFEITFEDAAKRFIKAKAPEWKNAKHGDQWRNTLGEYVY  141
             +G DP+  +K  + ++  +     TF DAA+R     +P W N+KH  QW +TL +Y +
Sbjct  80   AAGDDPLEIKKAESEKVVIP-----TFADAARRVHAELSPGWENPKHVRQWLSTLENYAF  134

Query  142  PKIGSLMVRHISRAHVVDVLEPIWTTKTETASRLRGRIEAILDWARVKGFRDDGVNPATW  201
            P++G+  +  I+ A+V + L P+W T +ETASR++ RI+ +++W++  GF     NP   
Sbjct  135  PQLGAKTLDSITAADVAETLRPVWLTLSETASRVKQRIHVVMQWGWAHGFC--VANPV--  190

Query  202  RGNLDKLLSAPKRTKRVRNHPALPIEQMGDFMAT--LRATPGVSARCLEF-VILTVARSG  258
             + +D LL+   R  R  ++PA+P  Q+  F+AT      P   +R L + VILT +RSG
Sbjct  191  -DVVDHLLPQQTRG-RDEHQPAMPWRQLPLFVATSVYSDEPYNVTRALLLMVILTATRSG  248

Query  259  EARGATWEEIDLRRAIWAIPGDRMKAKKEHRVPLSSSAVALLKSMERQPHQDLVFPSPRS  318
            EARG  W EID+++ +W+IP++RMKA+ +HRVPLS  A+ +L ++ R  H++LVFPSPR 
Sbjct  249  EARGMRWAEIDFHKRVWTIPAERMKARLQHRVPLSRQAIYILENI-RGLHDELVFPSPRK  307

Query  319  GGALSDMSLLELMRRQRL-------EATPHGFRSTFRDWASEHTNYPRELAEVALAHIKS  371
               LSDM L  ++R+++         AT+HGFRSTFRDW SE+  Y+R+LAE ALAH   
Sbjct  308  QQILSDMVLTSFLRKKKAVSDIPGRVATAHGFRSTFRDWCSEQ-GYSRDLAERALAHTLK  366

Query  372  DATEAAYWRSDVLEKRREMMNEWANFLKEK  401
            +  EAAY R+D+LE+R  MM+ WA+++  +
Sbjct  367  NKVEAAYHRTDLLEQRVPMMQAWADYVMSQ  396

33) Alide2_1079 in NC_015422


> AF326777|1|G1|15808697|AAL08426.1|Shigella_flexneri_2a_YSH6000|+|619..1836|int|-|integrase
Length=405

 Score =  230 bits (858),  Expect = 9e-62, Method: Compositional matrix adjust.
 Identities = 173/399 (44%), Positives = 250/399 (63%), Gaps = 37/399 (9%)

Query  27   GGVRGLILNVTMYGSRS-WVLRY--QVAGKRRDLGLGSYPSVTLadareaaraaraklaQ  83
            GG+ GL L+ +   +R+ WV+RY   V+ KRR+ GLG+YP V++A+A  +AR  R +LA 
Sbjct  22   GGITGLTLHPSSVKGRGKWVFRYVSPVTQKRRNAGLGTYPEVSIAEAARTARIMREQLAA  81

Query  84   GIDPIEDARRARARLVAEIHTSMTFGEAAKRYIASHEKGWKNAKHAQQWQRSLDMYATPV  143
            G DP+E  +    ++V       TF++AA+R  A    GW N+KH +QW  +L+ YA P 
Sbjct  82   GDDPLEIKKAESEKVVIP-----TFADAARRVHAELSPGWENPKHVRQWLSTLENYAFPQ  136

Query  144  LGKMPVRDISLAMVLKVLEPIWSSKTETATRLRGRIESVIDWAIARGYRTDSNPARWKGL  203
            LG   +  I+ A V   L P+W + +ETA+R++ RI+ V++W+ A+G+   +NP    ++
Sbjct  137  LGAKTLDSITAADVAETLRPVWLTLSETASRVKQRIHVVMQWGWAHGFCV-ANPV---DV  192

Query  204  LDKLLPAPGKVTKTTHFQALPYAQLPVFMEQLVGQE---GMGAKALLFLILTAARSGEVR  260
            +D LLP   +  +  H  A+P  QLP+F+   V  +    +    LL +ILTA+RSGE R
Sbjct  193  VDHLLPQQTR-GRDEHQPAMPWRQLPLFVATSVYSDEPYNVTRALLLMVILTATRSGEAR  251

Query  261  GATWEEIDLAARVWTIPAERMKASKAHRVPLSDAAIALLQEMKSLTLAAGRASGKAYVFP  320
            G  W EID+  RVWTIPAERMKA   HRVPLS  AI +L+++++L            VFP
Sbjct  252  GMRWAEIDFHKRVWTIPAERMKARLQHRVPLSRQAIYILENIRGLH--------DELVFP  303

Query  321  SPNSRDPELGSQLSDMTLTAVLRRLK-LEAVP------HGFRSTFRDWCAEQTDYPNEVA  373
            SP  ++      LSDM LT+ LR+ K +  +P      HGFRSTFRDWC+EQ +Y+ ++A
Sbjct  304  SPRKQQ-----ILSDMVLTSFLRKKKAVSDIPGRVATAHGFRSTFRDWCSEQ-GYSRDLA  357

Query  374  EMALAHTVGNKVEAAYRRGDLLAKRQQLMQDWADYALGR  412
            E ALAHT+ NKVEAAY+R DLL +R  +MQ WADY +++
Sbjct  358  ERALAHTLKNKVEAAYHRTDLLEQRVPMMQAWADYVMSQ  396

34) PP1Y_AT25938 in NC_015580


> AF326777|1|G1|15808697|AAL08426.1|Shigella_flexneri_2a_YSH6000|+|619..1836|int|-|integrase
Length=405

 Score =  229 bits (852),  Expect = 3e-61, Method: Compositional matrix adjust.
 Identities = 160/386 (42%), Positives = 247/386 (64%), Gaps = 22/386 (5%)

Query  9    VKAATNPGRYSDGDGLFLLVGPTGARS-WIVR--VQKDKKRRDFGLGSAAKVPLALARER  65
            +K+  +P   ++  GL L  ++  +R+ W+ R      +KRR+ GLG+ + V++A A   
Sbjct  12   IKPDDKPLPHGGITGLTLHPSSVKGRGKWVFRYVSPVTQKRRNAGLGTYPEVSIAEAART  71

Query  66   ARTVRSQIEAGIDPISERRKAAG---IPTFREAAASVHAEHKGGWKNDKHRKQWLATLEA  122
            AR +R Q+ AG DP+  ++  +    IPTF +AA  VHAE   GW N KH +QWL+TLE 
Sbjct  72   ARIMREQLAAGDDPLEIKKAESEKVVIPTFADAARRVHAELSPGWENPKHVRQWLSTLEN  131

Query  123  YVFPAFGDVSVGTVDAPAVRDVLAAIWLTKPETARRLRQRIVTVIDWAVAKGYRDGPLAM  182
            Y FP +G  +++++ A+ V + L ++WLT +ETA R++QRI  V++W+ A G+  +  ++
Sbjct  132  YAFPQLGAKTLDSITAADVAETLRPVWLTLSETASRVKQRIHVVMQWGWAHGFCVAN-PV  190

Query  183  AVIDKALPKQ-RAKVKHHTALPYADLPAFMMT---LRESESMGRLALEAVILTAARSGEV  238
             V+D  LP+Q R++  H+ A+P  +LP F+ T     E+ ++ R  L  VILTA+RSGE 
Sbjct  191  DVVDHLLPQQTRGRDEHQPAMPWRQLPLFVATSVYSDEPYNVTRALLLMVILTATRSGEA  250

Query  239  RMMEWAELDLDAGLWTVPAERMKAGREHVVPLPSQAVAFFERMKAHKRGDSDLVFPGNKR  298
            R M WAE+D++  +WT+PAERMKA  +H VPL+ QA+ ++E +++    + +LVFP+ ++
Sbjct  251  RGMRWAEIDFHKRVWTIPAERMKARLQHRVPLSRQAIYILENIRGL---HDELVFPSPRK  307

Query  299  GKPLSDMTLTKALR-DMEVDAVP------HGFRSTFRDWVAEQTHWPAELAEAALAHVIS  351
             + LSDM LT  LR    V  +P      HGFRSTFRDW +EQ   + +LAE ALAH + 
Sbjct  308  QQILSDMVLTSFLRKKKAVSDIPGRVATAHGFRSTFRDWCSEQGY-SRDLAERALAHTLK  366

Query  352  DKTVAAYQRGSMLEKRRELMAAWANY  377
            +K  AAY+R  +LE+R  +M AWA+Y
Sbjct  367  NKVEAAYHRTDLLEQRVPMMQAWADY  392

35) MexAM1_META1p4086 in NC_012808


> AF326777|1|G1|15808697|AAL08426.1|Shigella_flexneri_2a_YSH6000|+|619..1836|int|-|integrase
Length=405

 Score =  221 bits (824),  Expect = 4e-59, Method: Compositional matrix adjust.
 Identities = 163/371 (44%), Positives = 248/371 (67%), Gaps = 20/371 (5%)

Query  20   LVVDPSGAK---RWLLRLV--VQGRRRDIGLGGaalvtlaeareralaYRKTAREGGDPL  74
            L ++PS+ K   +W++R V  V  +RR+ GLG  + V++AEA   A   R     G+DPL
Sbjct  27   LTLHPSSVKGRGKWVFRYVSPVTQKRRNAGLGTYPEVSIAEAARTARIMREQLAAGDDPL  86

Query  75   AERRKAQD--VVPTFAEAVERVHSEHKASWANAKHAQQWRNTLQQYACPQLGTRRVDQID  132
              ++   +  V+PTFA+A  RVH+E  ++W N+KH +QW +TL++YA PQLG++ +D I 
Sbjct  87   EIKKAESEKVVIPTFADAARRVHAELSPGWENPKHVRQWLSTLENYAFPQLGAKTLDSIT  146

Query  133  TPDVLRVLAPIWLTKPETARRVRQRIGTVLDWAKAAGYRNGENPIEGVAKGLPKQG-DRD  191
            ++DV   L P+WLT +ETA RV+QRI  V++W+ A G+  + NP++ V   LP+Q  +RD
Sbjct  147  AADVAETLRPVWLTLSETASRVKQRIHVVMQWGWAHGFCVA-NPVDVVDHLLPQQTRGRD  205

Query  192  EHHAALPYEQVPSFI-TQLRAAEASEGGRLAFEFLILTAARTGEVLGARWDEISVANRLW  250
            EH++A+P  Q+P F+ T + + E+ +  R  +  +ILTA+R+GE  G RW EI   +R+W
Sbjct  206  EHQPAMPWRQLPLFVATSVYSDEPYNVTRALLLMVILTATRSGEARGMRWAEIDFHKRVW  265

Query  251  TVPATRMKAKREHRVPLSDrslailtraralaaGSPLVFPGRSGEKPLSNMVFLMLLRRM  310
            T+PA RMKA+ +HRVPLS +++ IL   R+L     LVFP+   ++ LS+MV+  +LR+ 
Sbjct  266  TIPAERMKARLQHRVPLSRQAIYILENIRGLH--DELVFPSPRKQQILSDMVLTSFLRKK  323

Query  311  EL-------AITAHGFRSSFRDWAGERTSLPREVAEMALAHAVENRVEAAYARSDLLERR  363
                       TAHGFRS+FRDW +E+ + +R++AE ALAH++ N+VEAAY R+DLLE+R
Sbjct  324  KAVSDIPGRVATAHGFRSTFRDWCSEQ-GYSRDLAERALAHTLKNKVEAAYHRTDLLEQR  382

Query  364  RDLMEQWATYV  374
              +M+ WA YV
Sbjct  383  VPMMQAWADYV  393

36) GbCGDNIH1_1508 in NC_008343


> AF326777|1|G1|15808697|AAL08426.1|Shigella_flexneri_2a_YSH6000|+|619..1836|int|-|integrase
Length=405

 Score =  220 bits (818),  Expect = 1e-58, Method: Compositional matrix adjust.
 Identities = 159/394 (41%), Positives = 245/394 (63%), Gaps = 22/394 (5%)

Query  1    MGKLSATSVKASKEPGRYGDGDGLYLVISPRGGKS-WVCR--VQKDGKRRDVGLGSAKKV  57
            +    A  +K+   P   G+  GL L  S+  G++ WV R       KRR+ GLG+   V
Sbjct  4    LTDTKARHIKPDDKPLPHGGITGLTLHPSSVKGRGKWVFRYVSPVTQKRRNAGLGTYPEV  63

Query  58   SLALARERAAKVRTQVEVGLDPVAERRKEAG---IPTFKEAAALVFAEHKASWRNQKHRA  114
            S+A A   A  +R Q+  G DP+  ++ E+    IPTF +AA  V AE  ++W N KH  
Sbjct  64   SIAEAARTARIMREQLAAGDDPLEIKKAESEKVVIPTFADAARRVHAELSPGWENPKHVR  123

Query  115  QWLSTLETYAFPTLGDLSVALIDGHHVRDAVISIWLEKPETARRVRQRINTVIDWAIGKG  174
            QWLSTLE YAFP LG  ++  I + +V +++ ++WL  +ETA RV+QRI+ V++W+ + G
Sbjct  124  QWLSTLENYAFPQLGAKTLDSITAADVAETLRPVWLTLSETASRVKQRIHVVMQWGWAHG  183

Query  175  YRTTPLPIAAMNKSMP-KVKAKGVHHTALPYAEVPAFVAK---LKERDTVGRLALEALIL  230
            +  +  P+  ++  +P + ++++ H+ A+P  ++P FVA      E   V R  L  +IL
Sbjct  184  FCVAN-PVDVVDHLLPQQTRGRDEHQPAMPWRQLPLFVATSVYSDEPYNVTRALLLMVIL  242

Query  231  TATRSGEIRGATWGDLDLDRGLWTIPAERMKAGKEHVVPLSSAALGVFQRAQRYREARSE  290
            TATRSGE RG  W+++D+++ +WTIPAERMKA  +H VPLS  A+ +++     R  + E
Sbjct  243  TATRSGEARGMRWAEIDFHKRVWTIPAERMKARLQHRVPLSRQAIYILENI---RGLHDE  299

Query  291  LVFPGQRGGKPLSDMTLTK-ICRDMEVAAVP------HGFRSSFRDWVADETNFDGDIAE  343
            LVFP+ R  + LSDM LT  + +   V+ +P      HGFRS+FRDW +++  +  D+AE
Sbjct  300  LVFPSPRKQQILSDMVLTSFLRKKKAVSDIPGRVATAHGFRSTFRDWCSEQ-GYSRDLAE  358

Query  344  MALAHAIGSKVEAAYRRGNLLEKRKALMEAWGDY  377
             ALAH++ +KVEAAY+R +LLE+R ++M+AW+DY
Sbjct  359  RALAHTLKNKVEAAYHRTDLLEQRVPMMQAWADY  392

37) Mext_0253 in NC_010172


> AF326777|1|G1|15808697|AAL08426.1|Shigella_flexneri_2a_YSH6000|+|619..1836|int|-|integrase
Length=405

 Score =  220 bits (821),  Expect = 8e-59, Method: Compositional matrix adjust.
 Identities = 156/374 (42%), Positives = 240/374 (65%), Gaps = 20/374 (5%)

Query  44   LVVEPSGSK---RWLLRTI--VQGRRRDIGLGGAGLVTLAEAREKALAYRKLARDGGDPL  98
            L ++PS+ K   +W++R +  V  +RR+ GLG    V++AEA   A   R     G+DPL
Sbjct  27   LTLHPSSVKGRGKWVFRYVSPVTQKRRNAGLGTYPEVSIAEAARTARIMREQLAAGDDPL  86

Query  99   AERR--KARATVPTFAEAAEQVHEEHKASWKNPKHAAQWITTLRTYANPHLGARRVDQIE  156
              ++    +  +PTFA+AA +VH E  ++W NPKH  QW++TL  YA P+LGA+ +D I 
Sbjct  87   EIKKAESEKVVIPTFADAARRVHAELSPGWENPKHVRQWLSTLENYAFPQLGAKTLDSIT  146

Query  157  TPDVLRALSPIWLTKGETARRVRQRIGTVLDWAKAAGHRTGDNPVESVAKGLPKQG-ERD  215
            ++DV  +L P+WLT +ETA RV+QRI  V++W+ A G   + NPV+ V   LP+Q   RD
Sbjct  147  AADVAETLRPVWLTLSETASRVKQRIHVVMQWGWAHGFCVA-NPVDVVDHLLPQQTRGRD  205

Query  216  EHHAALPYAEVPAFV-TRLQSSDHGEAARLAFEFLILTAARTSEVLRAEWREIDEAEALW  274
            EH++A+P  ++P FV T + S +  + +R  +  +ILTA+R++E     W EID    +W
Sbjct  206  EHQPAMPWRQLPLFVATSVYSDEPYNVTRALLLMVILTATRSGEARGMRWAEIDFHKRVW  265

Query  275  TVPAARMKAGREHRVPLSKRSLEIVRRAKLLAGDSAFIFPGRSTGKPMSNMVFLMALRRM  334
            T+PA RMKA  +HRVPLS++++ I+   + L ++  ++FP+    + +S+MV+   LR+ 
Sbjct  266  TIPAERMKARLQHRVPLSRQAIYILENIRGLHDE--LVFPSPRKQQILSDMVLTSFLRKK  323

Query  335  KL-------TVTAHGFRSSFRDWAAEATSLPREVAEMALAHTIENRVEAAYRRGDLLAKR  387
            K          TAHGFRS+FRDW +E  + +R++AE ALAHT+ N+VEAAY+R DLL +R
Sbjct  324  KAVSDIPGRVATAHGFRSTFRDWCSEQ-GYSRDLAERALAHTLKNKVEAAYHRTDLLEQR  382

Query  388  REMMEQWSTFVASK  401
              MM+ W+ +V S+
Sbjct  383  VPMMQAWADYVMSQ  396

38) Bpro_0966 in NC_007948


> AF326777|1|G1|15808697|AAL08426.1|Shigella_flexneri_2a_YSH6000|+|619..1836|int|-|integrase
Length=405

 Score =  216 bits (804),  Expect = 1e-57, Method: Compositional matrix adjust.
 Identities = 159/392 (41%), Positives = 255/392 (66%), Gaps = 26/392 (6%)

Query  25   GGVAGLHLWVKPSGNRS-WILRVL--VGAIRKDIGLGGYPDVTLAGardaarrardQILQ  81
            GG++GL L   +   R+ W++R +  V   R++ GLG YP+V++A A  +AR  R+Q+  
Sbjct  22   GGITGLTLHPSSVKGRGKWVFRYVSPVTQKRRNAGLGTYPEVSIAEAARTARIMREQLAA  81

Query  82   GVNPIEQRRQAKALLMADQAKAKTFKDCSAAFIEDRGDEWRNPKHRQQWHNTLETYAFPF  141
            G +P+E ++       +++    TF D +     + +  W NPKH +QW +TLE YAFP 
Sbjct  82   GDDPLEIKKAE-----SEKVVIPTFADAARRVHAELSPGWENPKHVRQWLSTLENYAFPQ  136

Query  142  IGGLFVRDISLAHVLEVLRPIWKTKTETAARVRGRIETVLDWAAVRGYRAGDNPARWKGH  201
            +G+  +  I+ A+V E LRP+W T +ETA+RV+ RI+ V++W+  +G+  ++      + 
Sbjct  137  LGAKTLDSITAADVAETLRPVWLTLSETASRVKQRIHVVMQWGWAHGFCVANPV----DV  192

Query  202  LDQVLPKPSKVKKVEHHSAVGLDDLAGFIAAV--RRVPGMGARALEF-AILTAARSGEVR  258
            +D++LP+ ++ +  EH++A+   +L+ F+A+      P   +RAL +  ILTA+RSGE R
Sbjct  193  VDHLLPQQTRGRD-EHQPAMPWRQLPLFVATSVYSDEPYNVTRALLLMVILTATRSGEAR  251

Query  259  GALWSEFDLKAAQWIVPPERMKAGEEHRVPLSKQAIKLLKSIPRFEGSDVVF-CGIKGQV  317
            G  W+E+D+    W +P+ERMKA  +HRVPLS+QAI +L +I  +++ ++VF    K Q+
Sbjct  252  GMRWAEIDFHKRVWTIPAERMKARLQHRVPLSRQAIYILENIRGLHD-ELVFPSPRKQQI  310

Query  318  LSDMTLSAVMR-RMEVNAVP------HGFRSTFRDWASERTNFPRELAEKALAHTIESKV  370
            LSDM L++ +R +  V+ +P      HGFRSTFRDW SE+  ++R+LAE+ALAHT+ +KV
Sbjct  311  LSDMVLTSFLRKKKAVSDIPGRVATAHGFRSTFRDWCSEQ-GYSRDLAERALAHTLKNKV  369

Query  371  EAAYRRGDLLAKRMQMMQAWADFCETPVNKGT  402
            EAAY+R DLL +R+ MMQAWAD+  + + K T
Sbjct  370  EAAYHRTDLLEQRVPMMQAWADYVMSQLAKNT  401

39) HYPMC_2026 in NC_015717


> AF326777|1|G1|15808697|AAL08426.1|Shigella_flexneri_2a_YSH6000|+|619..1836|int|-|integrase
Length=405

 Score =  212 bits (790),  Expect = 2e-56, Method: Compositional matrix adjust.
 Identities = 157/376 (42%), Positives = 238/376 (64%), Gaps = 18/376 (4%)

Query  32   GDGNGLMLVVDQ-SGASRWVLR--VQTNGRRRDIGLGGTSVVSLSEARDLAHEIRRKAKA  88
            G+  GL L      G ++WV+R       +RR+ GLG  + VS++EA   A+ +R +  A
Sbjct  22   GGITGLTLHPSSVKGRGKWVFRYVSPVTQKRRNAGLGTYPEVSIAEAARTARIMREQLAA  81

Query  89   GLDPVAVRRAERQGV--PTFEDCAKIVHAANLKTWRNGKHTDQWLNTLEAYAFPVIGKRP  146
            G DP+ +++AE + V  PTF D A+ VHA     W N KH  QWL+TLE YAFP +G + 
Sbjct  82   GDDPLEIKKAESEKVVIPTFADAARRVHAELSPGWENPKHVRQWLSTLENYAFPQLGAKT  141

Query  147  VNKVETGDILKILMPIWTDKAETARRVLQRLRTVLDHATAAGHRSGENPCRIAAIGLPKQ  206
            ++ + ++D+   L P+W   +ETA RV QR++ V++ + A G     NP  +    LP+Q
Sbjct  142  LDSITAADVAETLRPVWLTLSETASRVKQRIHVVMQWGWAHGF-CVANPVDVVDHLLPQQ  200

Query  207  G-SSVKHFAALPYADLPAFLTKLRGADDHDPIIKLALEFLILTAARSGEVRGAPPLEFDL  265
              +   H +A+P  +LP F++    +D+   + +  L  +ILTA+RSGE RG    E+D+
Sbjct  201  TRGRDEHQPAMPWRQLPLFVATSVYSDEPYNVTRALLLMVILTATRSGEARGMRWAEIDF  260

Query  266  RAKLWTIPASRMKAEREHIVPLSPRAIEIIQEAQRLAPNAEFVFASKRTRGKPLSDMALT  325
            + ++WTIPA RMKA  +H VPLS +AI I+++ + L  + E+VF+S R + + LSDM LT
Sbjct  261  HKRVWTIPAERMKARLQHRVPLSRQAIYILENIRGL--HDELVFPSPR-KQQILSDMVLT  317

Query  326  MLLRRLKV-------DATAHGFRSSFRDWCSEETDFPSEVAEMALAHAIDSKVEAAYRRG  378
             +LR+ K         ATAHGFRS+FRDWCSE+ +++ ++AE ALAH++ +KVEAAY+R 
Sbjct  318  SFLRKKKAVSDIPGRVATAHGFRSTFRDWCSEQ-GYSRDLAERALAHTLKNKVEAAYHRT  376

Query  379  KLLEKRRSLMNAWAKY  394
             LLE+R ++M+AWA Y
Sbjct  377  DLLEQRVPMMQAWADY  392

40) OA238_c14350 in NC_020908


> AF326777|1|G1|15808697|AAL08426.1|Shigella_flexneri_2a_YSH6000|+|619..1836|int|-|integrase
Length=405

 Score =  212 bits (790),  Expect = 2e-56, Method: Compositional matrix adjust.
 Identities = 149/361 (42%), Positives = 229/361 (64%), Gaps = 18/361 (4%)

Query  49   GAKRWVQRIV--VRGKRTEIGLGSASLVSLAEARETALENRKLARAGGDPLQAKRTSEA-  105
            G  +WV R V  V  KR + GLG+ + VS+AEA  TA   R    AG+DPL+ K++    
Sbjct  36   GRGKWVFRYVSPVTQKRRNAGLGTYPEVSIAEAARTARIMREQLAAGDDPLEIKKAESEK  95

Query  106  --LLTFEEASRKVHKIHEPTWRNKKHAAQFLSTLETYTFPRMSNLKVSEVTTADVLAVLQ  163
              + TF +A+R+VH    P W N KH  Q LSTLE Y+FP+++   +  +T+ADV   L+
Sbjct  96   VVIPTFADAARRVHAELSPGWENPKHVRQWLSTLENYAFPQLGAKTLDSITAADVAETLR  155

Query  164  PIWLEKPETAKRVRQRIGTVMKWAVANGWRQDNPAGAISQALPKQ-KQPVKHRKSLPYDE  222
            P+WL  +ETA RV+QRI  VM+W+ A+G    NP + + + LP+Q +    H+ ++P  +
Sbjct  156  PVWLTLSETASRVKQRIHVVMQWGWAHGFCVANPVDVVDHLLPQQTRGRDEHQPAMPWRQ  215

Query  223  VSGCL-VAVRSSRAFNATKLALELTVLTACRSGEVRLAEWSEIDLAKAEWTIPAQRMKAS  281
            ++  +  +V S  ++N T+  L + +LTA RSGE R   W+EID+ K  WTIPA+RMKA 
Sbjct  216  LPLFVATSVYSDEPYNVTRALLLMVILTATRSGEARGMRWAEIDFHKRVWTIPAERMKAR  275

Query  282  KEHRIPLSGRAVEVLEAAKALDDGTGLVFPSTTGNP-LSDMTLSKLVKGLGYDVDV----  336
             +HR+PLS +A+ +LE  ++L+D   LVFPS   +  LSDM L+ +++      D+    
Sbjct  276  LQHRVPLSRQAIYILENIRGLHD--ELVFPSPRKQQILSDMVLTSFLRKKKAVSDIPGRV  333

Query  337  ---HGFRTSFKTWCQERTTTAREVSEAALAHSIQNKAEAAYARSDLFEKRRKLMEQWSCF  393
               HGFR++F+ WC E+  + R+++E ALAH+++NK EAAY R+DL+E+R  +M+ W+ +
Sbjct  334  ATAHGFRSTFRDWCSEQGYS-RDLAERALAHTLKNKVEAAYHRTDLLEQRVPMMQAWADY  392

Query  394  V  394
            V
Sbjct  393  V  393

41) intZ [H] in NC_019902


> AF326777|1|G1|15808697|AAL08426.1|Shigella_flexneri_2a_YSH6000|+|619..1836|int|-|integrase
Length=405

 Score =  208 bits (774),  Expect = 4e-55, Method: Compositional matrix adjust.
 Identities = 165/381 (44%), Positives = 240/381 (63%), Gaps = 34/381 (8%)

Query  38   GAKSWVFRYALPITRTSSTGRPFAARRDAGLGAYPDVTLAQAREKARALREQIASGVDPV  97
            G   WVFRY  P+T+          RR+AGLG+YP+V++A+A   AR +REQ+A+G DP+
Sbjct  36   GRGKWVFRYVSPVTQK---------RRNAGLGTYPEVSIAEAARTARIMREQLAAGDDPL  86

Query  98   QarrearaaraaaeaKALTFDEAARKLLAAKTREFRNPKHALQWSATLNAYASPVLGALP  157
            + ++        +     TF +AAR++ A  +    NPKH  QW +TL+ YA P LGA  
Sbjct  87   EIKKAESEKVVIP-----TFADAARRVHAELSPGWENPKHVRQWLSTLENYAFPQLGAKT  141

Query  158  VDAIELAHVVEALSRDDLWTTKPETASRVRGRIEAVLNWATASGHRSGDNPARWRGNLDA  217
            +D+I  A+V E+L    +W T +ETASRV+ RI+ V++W+ A G     NP    + +D 
Sbjct  142  LDSITAADVAETLRP--VWLTLSETASRVKQRIHVVMQWGWAHGF-CVANPV---DVVDH  195

Query  218  VLPKPTRLKRVRHHKALPIPEMHDFMMALRQREG--MAARALEFL-ILTAARSGEVRGAT  274
            +LP+ TR  R  H+ A+P  ++  F+ +    +     +RAL ++ ILTA+RSGE RG  
Sbjct  196  LLPQQTR-GRDEHQPAMPWRQLPLFVATSVYSDEPYNVTRALLLMVILTATRSGEARGMR  254

Query  275  WAEIDLQARTWTIPADRMKAGREHVVPLCDDAIRLLKALPQHEGCDLVFASPRLGQ-LSD  333
            WAEID++ R WTIPA+RMKA  +H VPL  +AI +L  +   ++ +LVF+SPR  Q LSD
Sbjct  255  WAEIDFHKRVWTIPAERMKARLQHRVPLSRQAIYILENIRGLHD-ELVFPSPRKQQILSD  313

Query  334  MSISAVLRRMK-VDAVP------HGFRSTFRDWCSEFTSYPHEVAEMALAHTIPNAVERA  386
            M +++ LR+ K V  +P      HGFRSTFRDWCSE  +Y++++AE ALAHT+ N VE A
Sbjct  314  MVLTSFLRKKKAVSDIPGRVATAHGFRSTFRDWCSE-QGYSRDLAERALAHTLKNKVEAA  372

Query  387  YRRGDLLTKRRRLMEDWAKLL  407
            Y+R DLL +R  +M+ WA  +
Sbjct  373  YHRTDLLEQRVPMMQAWADYV  393

42) HYPDE_30553 in NC_021172


> AF326777|1|G1|15808697|AAL08426.1|Shigella_flexneri_2a_YSH6000|+|619..1836|int|-|integrase
Length=405

 Score =  178 bits (659),  Expect = 4e-46, Method: Compositional matrix adjust.
 Identities = 148/356 (42%), Positives = 219/356 (62%), Gaps = 19/356 (5%)

Query  42   GDGNGLYLIVDPSKA-SRWVLR--VQSSGRRRDVGLGGTKSVTLAEARDLAYEVRKKARV  98
            G+  GL L   + K+ ++WV+R     + +RR+ GLG    V++AEA   A  +R +   
Sbjct  22   GGITGLTLHPSSVKGRGKWVFRYVSPVTQKRRNAGLGTYPEVSIAEAARTARIMREQLAA  81

Query  99   GLDPVVVRRAEREGV--PTFENCAKTVHAANLKTWRNGKHTAQWLNTLETYAYPTIGKRQ  156
            G DP+ +++AE E V  PTF + A+ VHA     W N KH  QWL+TLE YA+P +G + 
Sbjct  82   GDDPLEIKKAESEKVVIPTFADAARRVHAELSPGWENPKHVRQWLSTLENYAFPQLGAKT  141

Query  157  VNKIETGDILKILMPIWTEKPETARRVLQRLRTVLDHATAAGHRSGENPCRIAVIGLPKQ  216
            ++ I ++D+   L P+W   +ETA RV QR++ V++ + A G     NP  +    LP+Q
Sbjct  142  LDSITAADVAETLRPVWLTLSETASRVKQRIHVVMQWGWAHGF-CVANPVDVVDHLLPQQ  200

Query  217  I-GNVKHFAALPYADVPAFI-MKLRSADCDPMIRLALEFLILTAARSGEVRGAPPEEFDL  274
              G   H +A+P  ++P F+   + S +   + R  L  +ILTA+RSGE RG    E+D+
Sbjct  201  TRGRDEHQPAMPWRQLPLFVATSVYSDEPYNVTRALLLMVILTATRSGEARGMRWAEIDF  260

Query  275  EAKLWTIPAERMKAEREHVVPLSPRAIEIVEEARKLAPESEFVFPSRRTNGKALSDMAMT  334
            + ++WTIPAERMKA  +H VPLS +AI I+E+ R L  + E+VFPS R + + LSDM +T
Sbjct  261  HKRVWTIPAERMKARLQHRVPLSRQAIYILENIRGL--HDELVFPSPRKQ-QILSDMVLT  317

Query  335  MLLRRLKI-------DATAHGFRSTFRDWASEETDFPSEVCEMALAHAIDNKVEAD  383
             +LR+ K         ATAHGFRSTFRDW SE+ +++ ++ E ALAH++ NKVEA 
Sbjct  318  SFLRKKKAVSDIPGRVATAHGFRSTFRDWCSEQ-GYSRDLAERALAHTLKNKVEAA  372

43) XAC29_08375 in NC_020800


> AF326777|1|G1|15808697|AAL08426.1|Shigella_flexneri_2a_YSH6000|+|619..1836|int|-|integrase
Length=405

 Score =  172 bits (636),  Expect = 2e-44, Method: Compositional matrix adjust.
 Identities = 117/286 (41%), Positives = 178/286 (63%), Gaps = 19/286 (6%)

Query  3    NDKHKAQWRSTLETYAYPYIGDLDVKQIDTPHVLAALDPIWITKNETASRVRGRIERVLA  62
            N KH  QW STLE YA+P +G   +  I +++V  +L P+W+T +ETASRV+ RI+ V+ 
Sbjct  118  NPKHVRQWLSTLENYAFPQLGAKTLDSITAADVAETLRPVWLTLSETASRVKQRIHVVMQ  177

Query  63   WATVSGHRTGDNPARWRGHLSEALAAPAQAKKVEHHAALPYAELPAFLSAL---QGQIGI  119
            W+   G   ++       ++ + L +     + EH++A+P  +LP F+++    +    +
Sbjct  178  WGWAHGFCVANP-----VDVVDHLLPQQTRGRDEHQPAMPWRQLPLFVATSVYSDEPYNV  232

Query  120  GAHALRFAILTATRTGEVIGARWDEFDLEENVWTIPVERMKAGKEHRVPLSSAALEILSA  179
                L   ILTATR+GE  G RW E+D++  VWTIP ERMKA  +HRVPLS  A+ IL  
Sbjct  233  TRALLLMVILTATRSGEARGMRWAEIDFHKRVWTIPAERMKARLQHRVPLSRQAIYILEN  292

Query  180  MRNFATGSGDGFVFPGAKNGSPLSNMAMLATL-KRMGRTDI-----TAHGFRSTFRDWAG  233
            +R +     D +VFP++++   LS+M + + L K+ + +DI     TAHGFRSTFRDW +
Sbjct  293  IRGLH----DELVFPSPRKQQILSDMVLTSFLRKKKAVSDIPGRVATAHGFRSTFRDWCS  348

Query  234  QETHHPREVIEHALAHQLKSKTEAAYARGDLLRKRRALMDEWATYA  279
            ++   +R++ E+ALAH LK+K EAAY R DLL +R ++M+ WA Y 
Sbjct  349  EQG-YSRDLAERALAHTLKNKVEAAYHRTDLLEQRVPMMQAWADYV  393