>AF202973|1|G1|6573222|AAF17598.1|Helicobacter_pylori_NCTC_11637_=_CCUG_17874|+|1..3744|cagA|-|CagA
Length = 3744
Score = 1488 bits (3839), Expect = 0.0
Identities = 831/928 (90%)
Strand = Plus / Plus
Query: 1637 actcttcaaggtaacctaaagcatgatggcgtgatgtttgtcaattattccaatttcaaa 1696
|||||||||||||||||||| |||||| ||||||||||||| |||||||| |||||||||
Sbjct: 1462 actcttcaaggtaacctaaaacatgatagcgtgatgtttgttaattattctaatttcaaa 1521
Query: 1697 tacaccaacgcctccaagagtcctgatgagggtataggcgctacgaatggcgtttcccat 1756
||||||||||||||||||||||||||| ||||| |||||| ||| |||||||||||||||
Sbjct: 1522 tacaccaacgcctccaagagtcctgataagggtgtaggcgttacaaatggcgtttcccat 1581
Query: 1757 ttggaagcaaattttagcaaggtggctgtctttaatttgcctgatttaaatggtctcgct 1816
|| || ||| ||||||||||| ||||||||||||||||||||||||||| |||||||
Sbjct: 1582 ttagacgcaggctttagcaaggtagctgtctttaatttgcctgatttaaataatctcgct 1641
Query: 1817 atctctagttttgcaaggcggaatttagaggataaactgatcgctaaaggattgccccca 1876
||| ||||||| | |||||||||||||||| ||||||| || || |||||||| ||| |
Sbjct: 1642 atcactagtttcgtaaggcggaatttagagaataaactagtcactgaaggattgtcccta 1701
Query: 1877 aaagacgctaataagatcatcaaagactttttgaacagcaacaaggaattgcttgaaaaa 1936
|||| ||||||||| | |||||||| ||||||| ||||||||| |||||| ||| ||||
Sbjct: 1702 caagaagctaataagcttatcaaagattttttgagcagcaacaaagaattggttggaaaa 1761
Query: 1937 gctttagacttcaataaagctgtagctgaagctaaaaatacaggcaattatgacggagtg 1996
|||||| |||||||||||||||||||||| |||||||| |||||||| ||||| | ||||
Sbjct: 1762 gctttaaacttcaataaagctgtagctgacgctaaaaacacaggcaactatgatgaagtg 1821
Query: 1997 aaaaaagctcaaaaagatcttgaaaaatctataaggaaacgagagcgtttagagcaagaa 2056
||||||||||| |||||||||||||||||| ||||||||||||||| ||||||| |||||
Sbjct: 1822 aaaaaagctcagaaagatcttgaaaaatctctaaggaaacgagagcatttagagaaagaa 1881
Query: 2057 ataacgaaaaaatttgagaacaagagcggcaacaaaaataaaatggaagcgaaagttcaa 2116
|| ||||||||| |||| ||| ||||||||||||||||||||||||||||||| ||||
Sbjct: 1882 gtagagaaaaaattggagagcaaaagcggcaacaaaaataaaatggaagcgaaagctcaa 1941
Query: 2117 gctaacagccaaaaagatgggatttttaagcttatcaatgaagaggctcataaggaagca 2176
|||||||||||||||||| ||||||| | | |||||| |||||||| ||| ||| |||
Sbjct: 1942 gctaacagccaaaaagataagatttttgcgttgatcaataaagaggctaatagggacgca 2001
Query: 2177 agaatcgccgcttacgctcagaatcttaaaggcatcaggagggaattgtttgataaagtt 2236
||| ||||||| ||||||||||||||||||||| |||||||||| ||||||| ||
Sbjct: 2002 agagcaatcgcttactctcagaatcttaaaggcatcaaaagggaattgtctgataaactt 2061
Query: 2237 --aaaaatctcaacaagaatttgaaagactttgataaatcttttgatgcgctcaaaagtg 2294
||||| |||||||| |||||||||||||| |||||||||||||| |||||| ||
Sbjct: 2062 gaaaaaa--tcaacaaggatttgaaagactttagtaaatcttttgatgaattcaaaaatg 2119
Query: 2295 gcaaaaataaggatttcagcaaggcagaagaaacgctaaaagcccttgaaagctcggtga 2354
|||||||||||||||| |||||||||||||||||||||||||||||| || |||||||||
Sbjct: 2120 gcaaaaataaggattttagcaaggcagaagaaacgctaaaagcccttaaaggctcggtga 2179
Query: 2355 aagatttgggtatcaatccagaatggatttcaaaagttgaaaaccttaatgcagctttga 2414
||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 2180 aagatttaggtatcaatccggaatggatttcaaaagttgaaaaccttaatgcagctttga 2239
Query: 2415 atgaattcaaaaatggcaaaaataaggatttcagcaaggtaacacaagcaaaaagcgacc 2474
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 2240 atgaattcaaaaatggcaaaaataaggatttcagcaaggtaacgcaagcaaaaagcgacc 2299
Query: 2475 ttgaaaattccattaaggatgtgctcatcaatcaagagataacggataaagttgacaatc 2534
||||||||||| |||| |||||| ||||||||||| ||||||||||||||||||||||||
Sbjct: 2300 ttgaaaattccgttaaagatgtgatcatcaatcaaaagataacggataaagttgacaatc 2359
Query: 2535 tcaatcaggctgtattaagggctaaagc 2562
||||||| || |||| || |||||||||
Sbjct: 2360 tcaatcaagcggtatcaatggctaaagc 2387
Score = 845 bits (2179), Expect = e-245
Identities = 466/518 (90%)
Strand = Plus / Plus
Query: 56 cggcttttaatccacaacaatttatcaataatcttcaagtggcttttattaaacttgata 115
|||||||||| || || ||||||||||| |||||||||||||||||| ||||| ||||||
Sbjct: 41 cggcttttaacccgcagcaatttatcaacaatcttcaagtggcttttcttaaagttgata 100
Query: 116 gtgctgtcgcttcatttgatcccgatcaaaaaccaatcgttgataagaacgatagggata 175
||||||||||||| ||||| |||||||||||||||||||||||||| ||||||||||
Sbjct: 101 acgctgtcgcttcatacgatcctgatcaaaaaccaatcgttgataagaatgatagggata 160
Query: 176 acaggcaagcttttaatgtaatctcgcaattaagggaagaatacgccaataaagcgatca 235
|||||||||||||| ||| ||||||||||||||||||||||||| |||||||||||||||
Sbjct: 161 acaggcaagcttttgatggaatctcgcaattaagggaagaatactccaataaagcgatca 220
Query: 236 aaaatcccaccaaaaagaatcagtatttttcagactttatcgataaaagcaatgatttga 295
||||||| ||||||||||||||||||||||||||||||||| |||| ||||||||||| |
Sbjct: 221 aaaatcctaccaaaaagaatcagtatttttcagactttatcaataagagcaatgatttaa 280
Query: 296 tcaacaaaaacgatctcattgatacagattcttccacaaagagctttgaaaaatttgggg 355
|||||||| || |||||||||||| || |||||||| ||| |||||| | |||||||||
Sbjct: 281 tcaacaaagacaatctcattgatataggttcttccataaaaagctttcagaaatttggga 340
Query: 356 ctcagcgttaccaaatttttatgaattgggtgtcccatcaaaaagatccgtctaaaatca 415
|||||||||||| |||||| | | |||||||||||||||||| ||||||||||||||||
Sbjct: 341 ctcagcgttaccgaattttcacaagttgggtgtcccatcaaaacgatccgtctaaaatca 400
Query: 416 acacccaaaaaatccgagattttatggaaaatatcatacaaccccctatctctgatgata 475
|||||| | |||||| |||||||||||||||||||||||||||||||| ||||||| |
Sbjct: 401 acacccgatcgatccgaaattttatggaaaatatcatacaaccccctatccctgatgaca 460
Query: 476 aagaaaaagcggagtttttgaggtctgccaaacaatcttttgcaggaattatcataggga 535
|||||||||| |||||||||| |||||||||||||||||||||||||| || |||||||
Sbjct: 461 aagaaaaagcagagtttttgaaatctgccaaacaatcttttgcaggaatcattataggga 520
Query: 536 accaaacccgatcggatgaaaaattcatgggcgttttt 573
| |||| |||| ||||| |||| ||||||||||| |||
Sbjct: 521 atcaaatccgaacggatcaaaagttcatgggcgtgttt 558
Score = 562 bits (1450), Expect = e-160
Identities = 328/366 (90%)
Strand = Plus / Plus
Query: 1269 gaaatgggattaacaaccctagcttctatctctacaaaacagaccaactcacaggcttgg 1328
|||| ||||||||||||||||| || |||||||||||| |||||||||||||||||
Sbjct: 1095 gaaa-gggattaacaaccctagtttttatctctacaaagaagaccaactcacaggctcac 1153
Query: 1329 aacaagcgttgagtcaagaagagatccaaaacaaagtggatttcatggaacttcttgcac 1388
||| ||| ||||||||||||||||||| ||||||| | |||||||||||| |||||||||
Sbjct: 1154 aacgagcattgagtcaagaagagatccgaaacaaaatagatttcatggaatttcttgcac 1213
Query: 1389 aaaacaacgctagattagataacttgagcgaggaagagaaagaaaagttccaaactgaga 1448
||||||| |||| |||||| |||||||||||| ||||||||||||| ||||||| |||||
Sbjct: 1214 aaaacaatgctaaattagacaacttgagcgagaaagagaaagaaaaattccaaaatgaga 1273
Query: 1449 ttggaaatttccaaaaagaccctaaggcttatttagactccctagggaatgatcgcattg 1508
||| | |||| ||||||||| ||||||||||||||||| |||||||||||||||| ||||
Sbjct: 1274 ttgaagattttcaaaaagactctaaggcttatttagacgccctagggaatgatcgtattg 1333
Query: 1509 cttttgtttctaaaaaagacc-aaaagcatttagctttggttactgagtttggtaatggg 1567
| ||||||||||||||||||| |||| |||| |||||| |||||||||||||||| |||
Sbjct: 1334 cctttgtttctaaaaaagacccaaaa-cattcagctttaattactgagtttggtaagggg 1392
Query: 1568 gaattgagctatactctcaaagattatgggaaaaaacaagatagagctttagatagggag 1627
|| |||||||| |||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 1393 gatttgagctacactctcaaagattatgggaaaaaagcagatagagctttagatagggag 1452
Query: 1628 acaaaa 1633
| ||||
Sbjct: 1453 a-aaaa 1457
Score = 476 bits (1229), Expect = e-134
Identities = 255/274 (93%)
Strand = Plus / Plus
Query: 3016 agcgaaattggacaattacgctactaacagccacacacgcattaatagcaatgtcaaaaa 3075
||||||| | |||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct: 3354 agcgaaactagacaattacgctactaacagccacacacgcattaatagcaatatccaaaa 3413
Query: 3076 tggaacaatcaatgaaaaagcgatcggcatgctaacgcaaaaaaaccctgagtggctcaa 3135
|||| |||||||||||||||||| ||| ||||||||||||||||||||||||||||||||
Sbjct: 3414 tggagcaatcaatgaaaaagcgaccggtatgctaacgcaaaaaaaccctgagtggctcaa 3473
Query: 3136 gcttgtgaatgataagatagttgcgcataatgtgggaagcgctcctttgtcaggttatga 3195
||| ||||||||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct: 3474 gctcgtgaatgataagatagttgcgcataatgtgggaagcgttcctttgtcagagtatga 3533
Query: 3196 taaaattggattcaaccaaaagaatatgaaaggttattctgattcgttcaggttttccac 3255
||||||||| |||||||| ||||||||||||| ||||||||||||||||| |||||||||
Sbjct: 3534 taaaattggcttcaaccagaagaatatgaaagattattctgattcgttcaagttttccac 3593
Query: 3256 caagttgagcaatgccgtaaaaaacattaagtct 3289
|||||||| |||||| |||||| || ||||||||
Sbjct: 3594 caagttgaacaatgctgtaaaagacgttaagtct 3627
Score = 365 bits (941), Expect = e-101
Identities = 207/241 (86%)
Strand = Plus / Plus
Query: 2766 atctcggcggatcttcccctttgaaaaggtatgctaaagttgatgatctcagtaaggtag 2825
||||||||||| ||| ||||||||||||| ||| ||||||||||||||||||||||||||
Sbjct: 3113 atctcggcggacctttccctttgaaaaggcatgataaagttgatgatctcagtaaggtag 3172
Query: 2826 ggctttcaagggagcaagaattgaatgagaaaattggcaatctcaatcaggcagtgtcag 2885
||||||||||| | ||||||||| | ||||||||| |||||||| ||| || || ||||
Sbjct: 3173 ggctttcaaggaatcaagaattggctcagaaaattgacaatctcagtcaagcggtatcag 3232
Query: 2886 aagctaaagcaggttcttttggcaacctagaacaaatgatggatggactcaaagattcta 2945
||||||||||||||| |||| |||| ||||| |||| ||| || |||||||||||||
Sbjct: 3233 aagctaaagcaggtttttttagcaatctagagcaaacgatagacaagctcaaagattcta 3292
Query: 2946 caaaaaagaatgttgtgaatctatggtttgaaggtgcaagaaaagtgcctattagtttgc 3005
||||| | ||| ||||||||||||| ||||| |||||| |||||||||| |||||||
Sbjct: 3293 caaaatacaattctgtgaatctatgggttgaaagtgcaaaaaaagtgcctgctagtttgt 3352
Query: 3006 c 3006
|
Sbjct: 3353 c 3353
Score = 364 bits (939), Expect = e-101
Identities = 200/227 (88%)
Strand = Plus / Plus
Query: 1034 tacaagttcaaccagttaccgattcacaataacgctctgtcttctatgctaatggggagt 1093
||||||||||| || ||| ||||||||||||||||||||||||| || |||||||||||
Sbjct: 859 tacaagttcaatcaattattgattcacaataacgctctgtcttctgtgttaatggggagt 918
Query: 1094 catagcagcatagaacctgaaaaagtttcattgttgtatggggataatggtggtcctgaa 1153
|||| ||||||||||||||||||||||||| ||||||| || ||||||||| || |
Sbjct: 919 cataatggcatagaacctgaaaaagtttcattattgtatgcgggcaatggtggttttgga 978
Query: 1154 gctaggcatgattggaacgccaccgttggttataaaaaccaacaaggcaacaatgtggcc 1213
|| | ||| ||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 979 gccaagcacgattggaacgccaccgttggttataaaaaccaacaaggcgacaatgtggct 1038
Query: 1214 acactcatcaatgcgcatcttaaaaacggcagcgggttagtcatagc 1260
|||||||| |||| |||| | ||||||||||| || |||||||||||
Sbjct: 1039 acactcattaatgtgcatatgaaaaacggcagtggcttagtcatagc 1085
Score = 193 bits (499), Expect = 2e-49
Identities = 104/110 (95%)
Strand = Plus / Plus
Query: 924 tagcctctacccccacccacatacaaggcttaccgcctgaagctagggatttgcttgatg 983
||||| ||||| ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 719 tagccactaccaccacccacatacaaggcttaccgcctgaatctagggatttgcttgatg 778
Query: 984 aaaggggtgatttttctaaattcactcttggtgatatggaaatgttggat 1033
|||||||| |||||||||||||||||||||| |||||||||||||| |||
Sbjct: 779 aaaggggtaatttttctaaattcactcttggcgatatggaaatgttagat 828
Score = 192 bits (497), Expect = 4e-49
Identities = 103/110 (94%)
Strand = Plus / Plus
Query: 2656 ttatgctacgattgatgatctcggcggatcttcccctttgaaaaggtatgctaaagttga 2715
|||||||||||||||||||||||||||| ||| ||||||||||||| ||| |||||||||
Sbjct: 2892 ttatgctacgattgatgatctcggcggacctttccctttgaaaaggcatgataaagttga 2951
Query: 2716 tgatctcagtaaggtagggcaatcagatagccctgaacccatttacgcta 2765
|||||||||||||||||||| ||||| |||||||||||||||||| ||||
Sbjct: 2952 tgatctcagtaaggtagggcgatcagttagccctgaacccatttatgcta 3001
Score = 191 bits (492), Expect = 1e-48
Identities = 102/109 (94%)
Strand = Plus / Plus
Query: 2657 tatgctacgattgatgatctcggcggatcttcccctttgaaaaggtatgctaaagttgat 2716
||||||||||||||||||||||||||| ||| ||||||||||||| ||| ||||||||||
Sbjct: 2995 tatgctacgattgatgatctcggcggacctttccctttgaaaaggcatgataaagttgat 3054
Query: 2717 gatctcagtaaggtagggcaatcagatagccctgaacccatttacgcta 2765
||||||||||||||||||| ||||| |||||||||||||||||| ||||
Sbjct: 3055 gatctcagtaaggtagggcgatcagttagccctgaacccatttatgcta 3103
Score = 181 bits (466), Expect = 1e-45
Identities = 107/120 (89%)
Strand = Plus / Plus
Query: 767 gatgaatctttgaaagagaggcaagaagcacaaaacaatggagagcc---tgttggggat 823
||||||| |||||||| |||||||||||| |||| ||||||||||| || |||||||
Sbjct: 559 gatgaattcttgaaagaaaggcaagaagcagaaaaaaatggagagcctactggtggggat 618
Query: 824 tggcttgatatttttttatcgtttgtatttaacaaagaacaatcttctgatctcaaagaa 883
||| | |||||||||||||| |||||||||||||||||||||||||||||| ||||||||
Sbjct: 619 tggttggatatttttttatcatttgtatttaacaaagaacaatcttctgatgtcaaagaa 678
Score = 111 bits (286), Expect = 1e-24
Identities = 59/63 (94%)
Strand = Plus / Plus
Query: 2766 atctcggcggatcttcccctttgaaaaggtatgctaaagttgatgatctcagtaaggtag 2825
||||||||||| ||| ||||||||||||| ||| ||||||||||||||||||||||||||
Sbjct: 3011 atctcggcggacctttccctttgaaaaggcatgataaagttgatgatctcagtaaggtag 3070
Query: 2826 ggc 2828
|||
Sbjct: 3071 ggc 3073
Score = 42 bits (108), Expect = 8e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 2635 tcaaaaaaatgaaagtttcaat 2656
||||||||||||||||||||||
Sbjct: 2466 tcaaaaaaatgaaagtttcaat 2487
Score = 24 bits (61), Expect = 2e+02
Identities = 12/12 (100%)
Strand = Plus / Plus
Query: 2580 gggtagagcaag 2591
||||||||||||
Sbjct: 2405 gggtagagcaag 2416
Score = 13 bits (35), Expect = 3e+05
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 889 caatcaa 895
|||||||
Sbjct: 680 caatcaa 686 |