Homolog Viewer

PAthogenisity Island DataBase (PAI DB)

Home PAIs REIs Genomes Search Links

Homologs of int gene of AF141323

564

protein-level

Hit (GenBank Accn)

Product

Source Genome

Eval.

Ident.(%)

1) intC
( YP_691185.1 )

integrase

NC_008258
(Shigella flexneri 8401)

0.0

100

2) O3M_00580
( YP_006767801.1 )

hypothetical protein

NC_018650
(Escherichia coli 2009EL-2050)

0.0

3) O3O_25120
( YP_006781906.1 )

hypothetical protein

NC_018661
(Escherichia coli 2009EL-2071)

0.0

4) O3K_00550
( YP_006776846.1 )

hypothetical protein

NC_018658
(Escherichia coli 2011C-3493)

0.0

5) SFxv_4026
( YP_005729297.1 )

Sai integrase

NC_017328
(Shigella flexneri 2002017)

0.0

6) S4835
( NP_839238.1 )

integrase

NC_004741
(Shigella flexneri 2457T)

0.0

7) SF3698
( NP_709437.1 )

integrase

NC_004337
(Shigella flexneri 301)

0.0

8) ybl160
( YP_003001213.1 )

ybl160

NC_012892
(Escherichia coli BL21(DE3))

0.0

9) ECD_03516
( YP_003056085.1 )

hypothetical protein

NC_012971
(Escherichia coli BL21(DE3))

0.0

10) CE10_4227
( YP_006146216.1 )

putative prophage integrase

NC_017646
(Escherichia coli CE10)

0.0

11) intC
( NP_756353.1 )

prophage integrase

NC_004431
(Escherichia coli CFT073)

0.0

12) ECBD_0066
( YP_003034330.1 )

integrase

NC_012947
(Escherichia coli Escherichia coli BL21-Gold(DE3)pLysS AG)

0.0

13) ECIAI39_4188
( YP_002410064.1 )

putative prophage integrase

NC_011750
(Escherichia coli IAI39)

0.0

14) ECB_03516
( YP_003046695.1 )

Int

NC_012967
(Escherichia coli REL606)

0.0

15) SSON_3744
( YP_312525.1 )

integrase

NC_007384
(Shigella sonnei Ss046)

0.0

16) ETEC_3899
( YP_006117440.1 )

integrase

NC_017633
(Escherichia coli ETEC H10407)

0.0

17) ECABU_c41260
( YP_006108090.1 )

putative phage integrase

NC_017631
(Escherichia coli ABU 83972)

1e-180

18) intC
( YP_006156223.1 )

putative prophage integrase

NC_017652
(Escherichia coli clone D i14)

1e-180

19) intC
( YP_006151304.1 )

putative prophage integrase

NC_017651
(Escherichia coli clone D i2)

1e-180

20) intL
( NP_290239.1 )

integrase for prophage 933L and the LEE pathogenicity island

NC_002655
(Escherichia coli EDL933)

1e-180

21) ECO55CA74_21080
( YP_006161321.1 )

putative integrase for prophage 933L and the LEE pathogenicity island

NC_017656
(Escherichia coli RM12579)

1e-180

22) ECs4534
( NP_312561.1 )

integrase

NC_002695
(Escherichia coli Sakai)

1e-180

23) intL
( YP_003080451.1 )

integrase for prophage 933L and the LEE pathogenicity island

NC_013008
(Escherichia coli TW14359)

1e-180

24) CDCO157_4272
( YP_006315138.1 )

putative integrase

NC_017906
(Escherichia coli Xuzhou21)

1e-180

25) intL
( YP_003501848.1 )

CP4-like integrase

NC_013941
(Escherichia coli CB9615)

3e-180

26) ECH74115_5032
( YP_002273139.1 )

integrase

NC_011353
(Escherichia coli EC4115)

3e-180

27) ECP_3765
( YP_671637.1 )

phage integrase

NC_008253
(Escherichia coli 536)

2e-177

28) SSON53_21650
( YP_005458822.1 )

hypothetical protein

NC_016822
(Shigella sonnei 53G)

1e-160

29) YE4117
( YP_001008254.1 )

putative phage integrase

NC_008800
(Yersinia enterocolitica 8081)

9e-155

30) YPTB3886
( YP_072362.1 )

integrase

NC_006155
(Yersinia pseudotuberculosis IP 32953)

8e-151

31) YPTS_4103
( YP_001874506.1 )

integrase family protein

NC_010634
(Yersinia pseudotuberculosis PB1/+)

8e-151

32) EAE_06555
( YP_004591514.1 )

hypothetical protein

NC_015663
(Enterobacter aerogenes KCTC 2190)

3e-150

33) P12B_c3788
( YP_006170775.1 )

Sai integrase-like protein

NC_017663
(Escherichia coli P12b)

2e-149

34) plu0125
( NP_927495.1 )

hypothetical protein

NC_005126
(Photorhabdus luminescens TTO1)

2e-148

35) EKO11_0064
( YP_005275792.1 )

integrase family protein

NC_016902
(Escherichia coli KO11FL)

4e-148

36) KO11_04405
( YP_006163219.1 )

hypothetical protein

NC_017660
(Escherichia coli KO11FL)

4e-148

37) LY180_18845
( YP_008566814.1 )

integrase

NC_022364
(Escherichia coli LY180)

4e-148

38) ECW_m3936
( YP_006126516.1 )

putative integrase

NC_017635
(Escherichia coli W)

4e-148

39) WFL_19235
( YP_006175275.1 )

hypothetical protein

NC_017664
(Escherichia coli W)

4e-148

40) SMWW4_v1c00920
( YP_007403919.1 )

phage integrase

NC_020211
(Serratia marcescens WW4)

7e-144

41) ETAE_3428
( YP_003297470.1 )

integrase

NC_013508
(Edwardsiella tarda EIB202)

2e-143

42) YE105_C3845
( YP_004300042.1 )

putative phage integrase

NC_015224
(Yersinia enterocolitica 105.5R(r))

2e-141

43) YPK_0061
( YP_001718828.1 )

integrase family protein

NC_010465
(Yersinia pseudotuberculosis YPIII)

4e-141

44) Y11_30661
( YP_006006565.1 )

phage integrase

NC_017564
(Yersinia enterocolitica Y11)

7e-141

45) xerC4
( NP_994679.1 )

phage integrase

NC_005810
(Yersinia pestis 91001)

1e-139

46) A1122_05665
( YP_005520819.1 )

putative phage integrase

NC_017168
(Yersinia pestis A1122)

1e-139

47) YpAngola_A4153
( YP_001608430.1 )

phage integrase family site specific recombinase

NC_010159
(Yersinia pestis Angola)

1e-139

48) YPA_4123
( YP_654029.1 )

putative phage integrase

NC_008150
(Yersinia pestis Antiqua)

1e-139

49) YPO4033
( YP_002348896.1 )

phage integrase

NC_003143
(Yersinia pestis CO92)

1e-139

50) YPD4_3547
( YP_005506754.1 )

putative phage integrase

NC_017154
(Yersinia pestis D106004)

1e-139

51) YPD8_3553
( YP_005510614.1 )

putative phage integrase

NC_017160
(Yersinia pestis D182038)

1e-139

52) y4052
( NP_671345.1 )

integrase

NC_004088
(Yersinia pestis KIM)

1e-139

53) YPN_3680
( YP_649607.1 )

phage integrase

NC_008149
(Yersinia pestis Nepal516)

1e-139

54) YPDSF_3775
( YP_001165093.1 )

phage integrase

NC_009381
(Yersinia pestis Pestoides F)

1e-139

55) ECO26_4941
( YP_003231837.1 )

integrase

NC_013361
(Escherichia coli 11368)

9e-140

56) SEEH1578_04845
( YP_008245042.1 )

integrase

NC_021810
(Salmonella enterica 41578)

9e-140

57) EC042_3992
( YP_006098276.1 )

integrase

NC_017626
(Escherichia coli 042)

2e-139

58) YPC_4545
( YP_005626217.1 )

putative phage integrase

NC_017265
(Yersinia pestis Harbin 35)

4e-139

59) A3UG_00595
( YP_006475574.1 )

hypothetical protein

NC_018079
(Enterobacter cloacae SDM)

9e-139

60) EcSMS35_4002
( YP_001745965.1 )

phage integrase family site specific recombinase

NC_010498
(Escherichia coli SMS-3-5)

3e-138

61) EbC_44590
( YP_003743837.1 )

phage integrase

NC_014306
(Erwinia billingiae Eb661)

4e-138

62) Spro_0108
( YP_001476346.1 )

integrase family protein

NC_009832
(Serratia proteamaculans 568)

5e-137

63) ENC_02820
( YP_007844422.1 )

Integrase

NC_021046
(Enterobacter cloacae NCTC 9394)

5e-137

64) A79E_0092
( YP_006633935.1 )

phage integrase, Phage P4-associated

NC_018522
(Klebsiella pneumoniae 1084)

2e-136

65) KP1_5380
( YP_002921868.1 )

phage integrase family protein

NC_012731
(Klebsiella pneumoniae NTUH-K2044)

2e-136

66) EcolC_0053
( YP_001723066.1 )

integrase family protein

NC_010468
(Escherichia coli ATCC 8739)

2e-136

67) SARI_03887
( YP_001572823.1 )

hypothetical protein

NC_010067
(Salmonella enterica RSK2980)

9e-135

68) YPK_3149
( YP_001721873.1 )

integrase family protein

NC_010465
(Yersinia pseudotuberculosis YPIII)

2e-131

69) SEEB0189_04710
( YP_008307295.1 )

integrase

NC_021844
(Salmonella enterica CFSAN000189)

2e-130

70) A225_4904
( YP_006500577.1 )

phage integrase

NC_018106
(Klebsiella oxytoca E718)

6e-130

71) EAE_02780
( YP_004590770.1 )

Integrase

NC_015663
(Enterobacter aerogenes KCTC 2190)

1e-129

72) YpsIP31758_0884
( YP_001399868.1 )

phage integrase family site specific recombinase

NC_009708
(Yersinia pseudotuberculosis IP 31758)

5e-129

73) int
( YP_071664.1 )

phage integrase

NC_006155
(Yersinia pseudotuberculosis IP 32953)

5e-129

74) YPTS_3293
( YP_001873705.1 )

integrase family protein

NC_010634
(Yersinia pseudotuberculosis PB1/+)

5e-129

75) YPK_0925
( YP_001719679.1 )

integrase family protein

NC_010465
(Yersinia pseudotuberculosis YPIII)

5e-129

76) KOX_02335
( YP_005016447.1 )

Integrase

NC_016612
(Klebsiella oxytoca KCTC 1686)

6e-129

77) int
( YP_008137204.1 )

integrase Int

NC_021591
(Serratia odorifera 4Rx13)

7e-129

78) int4
( NP_994857.1 )

integrase

NC_005810
(Yersinia pestis 91001)

8e-129

79) A1122_00590
( YP_005519823.1 )

integrase

NC_017168
(Yersinia pestis A1122)

8e-129

80) YpAngola_A3853
( YP_001608158.1 )

phage integrase family site specific recombinase

NC_010159
(Yersinia pestis Angola)

8e-129

81) int
( YP_002345935.1 )

integrase

NC_003143
(Yersinia pestis CO92)

8e-129

82) int
( YP_005504005.1 )

integrase

NC_017154
(Yersinia pestis D106004)

8e-129

83) int
( YP_005507871.1 )

integrase

NC_017160
(Yersinia pestis D182038)

8e-129

84) YPC_0922
( YP_005622895.1 )

integrase

NC_017265
(Yersinia pestis Harbin 35)

8e-129

85) y3271
( NP_670570.1 )

integrase

NC_004088
(Yersinia pestis KIM)

8e-129

86) YPN_3086
( YP_649013.1 )

integrase

NC_008149
(Yersinia pestis Nepal516)

8e-129

87) int
( YP_003567008.1 )

integrase

NC_014029
(Yersinia pestis Z176003)

8e-129

88) YPDSF_0629
( YP_001162011.1 )

integrase

NC_009381
(Yersinia pestis Pestoides F)

2e-128

89) M621_05660
( YP_008157963.1 )

integrase

NC_021659
(Serratia plymuthica S13)

2e-128

90) int
( YP_002383909.1 )

Integrase

NC_011740
(Escherichia fergusonii ATCC 35469)

3e-128

91) PAU_01003
( YP_003039840.1 )

putative phage integrase

NC_012962
(Photorhabdus asymbiotica ATCC 43949)

1e-127

92) EcHS_A0329
( YP_001457101.1 )

site-specific recombinase, phage integrase

NC_009800
(Escherichia coli HS)

5e-127

93) ETAC_13020
( YP_007630085.1 )

Prophage integrase

NC_020796
(Edwardsiella tarda C07-087)

9e-127

94) Dda3937_00938
( YP_003884289.1 )

Integrase

NC_014500
(Dickeya dadantii 3937)

1e-126

95) A3UG_04555
( YP_006476358.1 )

prophage CPS-53 integrase

NC_018079
(Enterobacter cloacae SDM)

5e-126

96) ECO55CA74_01660
( YP_006157517.1 )

Integrase for prophage CP-933I

NC_017656
(Escherichia coli RM12579)

1e-125

97) ETEC_0316
( YP_006113905.1 )

prophage integrase

NC_017633
(Escherichia coli ETEC H10407)

2e-125

98) G2583_0351
( YP_003497974.1 )

Integrase for prophage CP-933I

NC_013941
(Escherichia coli CB9615)

3e-125

99) EcSMS35_0299
( YP_001742404.1 )

phage integrase family site specific recombinase

NC_010498
(Escherichia coli SMS-3-5)

3e-125

100) ECSE_0264
( YP_002291539.1 )

putative phage integrase

NC_011415
(Escherichia coli SE11)

4e-125

101) ECs0289
( NP_308316.1 )

integrase

NC_002695
(Escherichia coli Sakai)

4e-125

102) ECABU_c03450
( YP_006104480.1 )

DNA integration/recombination/invertion protein

NC_017631
(Escherichia coli ABU 83972)

5e-125

103) PAGR_g2495
( YP_005993222.1 )

site-specific recombinase, phage integrase family

NC_017554
(Pantoea ananatis PA13)

1e-124

104) Z0324
( NP_285976.1 )

integrase for prophage CP-933I

NC_002655
(Escherichia coli EDL933)

1e-124

105) int
( YP_002399202.1 )

Integrase from prophage

NC_011745
(Escherichia coli ED1a)

9e-125

106) Dd586_2842
( YP_003334387.1 )

integrase family protein

NC_013592
(Dickeya dadantii Ech586)

2e-124

107) ETAF_0751
( YP_005698365.1 )

Integrase

NC_017309
(Edwardsiella tarda FL6-60)

3e-124

108) O3K_20180
( YP_006780702.1 )

prophage CPS-53 integrase

NC_018658
(Escherichia coli 2011C-3493)

4e-124

109) EC55989_0268
( YP_002401394.1 )

prophage CPS-53 integrase

NC_011748
(Escherichia coli 55989)

4e-124

110) SMWW4_v1c08950
( YP_007404718.1 )

putative site specific integrase

NC_020211
(Serratia marcescens WW4)

4e-124

111) int
( YP_001908356.1 )

Prophage integrase

NC_010694
(Erwinia tasmaniensis Et1/99)

4e-124

112) KPK_4426
( YP_002240225.1 )

phage integrase family site-specific recombinase

NC_011283
(Klebsiella pneumoniae 342)

2e-123

113) ECENHK_04640
( YP_006577439.1 )

integrase

NC_018405
(Enterobacter cloacae ENHKU01)

3e-123

114) Spro_3887
( YP_001480111.1 )

integrase family protein

NC_009832
(Serratia proteamaculans 568)

3e-123

115) SerAS9_4095
( YP_004507455.1 )

integrase

NC_015567
(Serratia plymuthica AS9)

5e-123

116) SerAS12_4096
( YP_004502503.1 )

integrase family protein

NC_015566
(Serratia sp. AS12)

5e-123

117) SerAS13_4096
( YP_006026917.1 )

integrase family protein

NC_017573
(Serratia sp. AS13)

5e-123

118) intS
( YP_003466695.1 )

CPS-53 (KpLE1) prophage; Sf6-like integrase

NC_013892
(Xenorhabdus bovienii SS-2004)

6e-123

119) ETAC_11945
( YP_007629870.1 )

putative phage integrase

NC_020796
(Edwardsiella tarda C07-087)

7e-123

120) W5S_3565
( YP_006284507.1 )

Putative prophage CPS-53 integrase, CPS-53 (KpLE1) prophage

NC_017845
(Pectobacterium sp. SCC3193)

1e-122

121) ECNA114_2439
( YP_006139547.1 )

putative phage integrase

NC_017644
(Escherichia coli NA114)

2e-122

122) ECSF_2224
( YP_003350214.1 )

putative phage integrase

NC_013654
(Escherichia coli SE15)

2e-122

123) PC1_3281
( YP_003018833.1 )

integrase family protein

NC_012917
(Pectobacterium carotovorum PC1)

2e-122

124) ECH74115_0306
( YP_002268886.1 )

site-specific recombinase, phage integrase family

NC_011353
(Escherichia coli EC4115)

4e-122

125) SEEH1578_21245
( YP_008248300.1 )

integrase

NC_021810
(Salmonella enterica 41578)

1e-121

126) intS
( YP_004950715.1 )

prophage CPS-53 integrase

NC_016514
(Enterobacter cloacae EcWSU1)

1e-121

127) CFSAN002069_19870
( YP_008252715.1 )

integrase

NC_021812
(Salmonella enterica CFSAN002069)

9e-122

128) SeHA_C2638
( YP_002046450.1 )

integrase

NC_011083
(Salmonella enterica SL476)

9e-122

129) int
( YP_003713510.1 )

integrase

NC_014228
(Xenorhabdus nematophila ATCC 19061)

2e-121

130) PC1_2828
( YP_003018394.1 )

integrase family protein

NC_012917
(Pectobacterium carotovorum PC1)

2e-121

131) SeSA_A0666
( YP_002113632.1 )

integrase

NC_011094
(Salmonella enterica CVM19633)

2e-121

132) Pecwa_1377
( YP_003258785.1 )

integrase

NC_013421
(Pectobacterium wasabiae WPP163)

4e-121

133) SeSA_A0374
( YP_002113350.1 )

site-specific recombinase, phage integrase family protein

NC_011094
(Salmonella enterica CVM19633)

6e-121

134) PC1_2870
( YP_003018435.1 )

integrase family protein

NC_012917
(Pectobacterium carotovorum PC1)

2e-120

135) KPHS_10130
( YP_005225313.1 )

putative site specific integrase

NC_016845
(Klebsiella pneumoniae HS11286)

2e-120

136) N559_4136
( YP_008427041.1 )

site specific integrase

NC_022082
(Klebsiella pneumoniae JM45)

2e-120

137) PAU_02730
( YP_003041563.1 )

putative prophage integrase

NC_012962
(Photorhabdus asymbiotica ATCC 43949)

3e-120

138) A225_1133
( YP_006496884.1 )

phage integrase

NC_018106
(Klebsiella oxytoca E718)

3e-120

139) W5S_1285
( YP_006282258.1 )

Putative prophage CPS-53 integrase, CPS-53 (KpLE1) prophage

NC_017845
(Pectobacterium sp. SCC3193)

4e-120

140) Pecwa_1403
( YP_003258809.1 )

integrase

NC_013421
(Pectobacterium wasabiae WPP163)

4e-120

141) S70_17360
( YP_006217973.1 )

CPS-53 (KpLE1) prophage, Sf6-like integrase

NC_017731
(Providencia stuartii MRSN 2154)

7e-120

142) ETAE_0799
( YP_003294855.1 )

site specific integrase

NC_013508
(Edwardsiella tarda EIB202)

1e-119

143) EcE24377A_3377
( YP_001464377.1 )

site-specific recombinase, phage integrase

NC_009801
(Escherichia coli E24377A)

8e-119

144) EcSMS35_3112
( YP_001745129.1 )

site-specific recombinase, phage integrase family protein

NC_010498
(Escherichia coli SMS-3-5)

9e-119

145) SN31241_7100
( YP_008358628.1 )

CP4-like integrase

NC_021902
(Salmonella enterica USMARC-S3124.1)

3e-118

146) SeHA_C4738
( YP_002048369.1 )

integrase

NC_011083
(Salmonella enterica SL476)

4e-118

147) ESA_03025
( YP_001439090.1 )

hypothetical protein

NC_009778
(Cronobacter sakazakii ATCC BAA-894)

5e-118

148) YE105_C2844
( YP_004299043.1 )

Integrase

NC_015224
(Yersinia enterocolitica 105.5R(r))

5e-118

149) ETAF_0741
( YP_005698355.1 )

prophage CP-933I integrase protein

NC_017309
(Edwardsiella tarda FL6-60)

6e-118

150) ECL_01076
( YP_003611586.1 )

hypothetical protein

NC_014121
(Enterobacter cloacae ATCC 13047)

8e-118

151) Pat9b_1012
( YP_004114892.1 )

integrase family protein

NC_014837
(Pantoea sp. At-9b)

9e-116

152) EAE_24695
( YP_004595111.1 )

putative integrase

NC_015663
(Enterobacter aerogenes KCTC 2190)

2e-115

153) CSSP291_04405
( YP_007439767.1 )

putative integrase

NC_020260
(Cronobacter sakazakii Sp291)

7e-115

154) ECL_03688
( YP_003614171.1 )

putative integrase

NC_014121
(Enterobacter cloacae ATCC 13047)

7e-115

155) SU5_02989
( YP_006088602.1 )

Phage integrase, Phage P4-associated

NC_017623
(Salmonella enterica B182)

1e-113

156) SEEH1578_01295
( YP_008244336.1 )

Phage integrase, Phage P4-associated protein

NC_021810
(Salmonella enterica 41578)

6e-113

157) SU5_03538
( YP_006089141.1 )

Phage integrase, Phage P4-associated

NC_017623
(Salmonella enterica B182)

6e-113

158) CFSAN002069_16980
( YP_008252158.1 )

integrase

NC_021812
(Salmonella enterica CFSAN002069)

6e-113

159) SeHA_C3266
( YP_002047021.1 )

site-specific recombinase, phage integrase family

NC_011083
(Salmonella enterica SL476)

6e-113

160) intS
( YP_003712222.1 )

CPS-53 (KpLE1) prophage; Sf6-like integrase

NC_014228
(Xenorhabdus nematophila ATCC 19061)

1e-112

161) PAU_01009
( YP_003039846.1 )

putative phage integrase

NC_012962
(Photorhabdus asymbiotica ATCC 43949)

5e-111

162) ENC_24500
( YP_007846063.1 )

Integrase

NC_021046
(Enterobacter cloacae NCTC 9394)

6e-111

163) CFSAN001992_09575
( YP_007471661.1 )

prophage CPS-53 integrase

NC_020307
(Salmonella enterica CFSAN001992)

2e-110

164) ECA3460
( YP_051550.1 )

phage integrase

NC_004547
(Pectobacterium atrosepticum SCRI1043)

5e-110

165) PputGB1_0681
( YP_001666927.1 )

integrase family protein

NC_010322
(Pseudomonas putida GB-1)

8e-108

166) PST_0259
( YP_001170808.1 )

phage integrase family site specific recombinase

NC_009434
(Pseudomonas stutzeri A1501)

2e-107

167) Psest_4016
( YP_007242119.1 )

integrase

NC_019936
(Pseudomonas stutzeri RCH2)

2e-107

168) A225_1439
( YP_006497184.1 )

integrase

NC_018106
(Klebsiella oxytoca E718)

8e-107

169) M495_08725
( YP_008229693.1 )

integrase

NC_021741
(Serratia liquefaciens ATCC 27592)

2e-105

170) SBG_2173
( YP_004731002.1 )

phage integrase

NC_015761
(Salmonella bongori NCTC 12419)

2e-103

171) YPA_0385
( YP_650298.1 )

integrase

NC_008150
(Yersinia pestis Antiqua)

6e-103

172) ECNA114_4679
( YP_006141802.1 )

Putative integrase

NC_017644
(Escherichia coli NA114)

2e-97

173) CDCO157_0285
( YP_006311144.1 )

putative integrase

NC_017906
(Escherichia coli Xuzhou21)

1e-96

174) ECED1_5046
( YP_002400791.1 )

putative prophage integrase

NC_011745
(Escherichia coli ED1a)

2e-95

175) vinT
( YP_007990957.1 )

hypothetical protein

NC_021232
(Klebsiella pneumoniae SB3432)

2e-91

176) EbC_31530
( YP_003742531.1 )

integrase

NC_014306
(Erwinia billingiae Eb661)

2e-90

177) intC
( YP_003296511.1 )

prophage Sf6-like integrase

NC_013508
(Edwardsiella tarda EIB202)

5e-90

178) GM21_1254
( YP_003021073.1 )

integrase family protein

NC_012918
(Geobacter sp. M21)

3e-89

179) RSc0968
( NP_519089.1 )

cp4-like integrase

NC_003295
(Ralstonia solanacearum GMI1000)

1e-87

180) intB
( NP_900321.1 )

prophage CP4-like integrase

NC_005085
(Chromobacterium violaceum ATCC 12472)

2e-87

181) i14_4873a
( YP_006156926.1 )

prophage P4 integrase

NC_017652
(Escherichia coli clone D i14)

4e-87

182) i02_4873a
( YP_006152007.1 )

prophage P4 integrase

NC_017651
(Escherichia coli clone D i2)

4e-87

183) D782_3965
( YP_007342049.1 )

Integrase

NC_020063
(Enterobacteriaceae bacterium FGI 57)

6e-87

184) PSPTO_5344
( NP_795075.1 )

site-specific recombinase, phage integrase family

NC_004578
(Pseudomonas syringae DC3000)

2e-86

185) EcSMS35_4753
( YP_001746674.1 )

phage integrase family site specific recombinase

NC_010498
(Escherichia coli SMS-3-5)

2e-86

186) CFSAN001992_11535
( YP_007472047.1 )

phage integrase family site-specific recombinase

NC_020307
(Salmonella enterica CFSAN001992)

3e-86

187) intC
( YP_006169453.1 )

putative prophage integrase

NC_017663
(Escherichia coli P12b)

6e-86

188) Rfer_1354
( YP_522619.1 )

phage integrase

NC_007908
(Rhodoferax ferrireducens T118)

6e-86

189) Dd586_0394
( YP_003331995.1 )

integrase family protein

NC_013592
(Dickeya dadantii Ech586)

7e-86

190) MICA_2451
( YP_004866754.1 )

phage integrase family protein

NC_016026
(Micavibrio aeruginosavorus ARL-13)

1e-85

191) Ser39006_0951
( YP_008521333.1 )

protein of unknown function DUF4102

NC_022268
(Serratia sp. ATCC 39006)

1e-85

192) ECA2879
( YP_050970.1 )

integrase

NC_004547
(Pectobacterium atrosepticum SCRI1043)

2e-85

193) ECP_4521
( YP_672358.1 )

prophage P4 integrase

NC_008253
(Escherichia coli 536)

2e-85

194) XBJ1_1315
( YP_003467235.1 )

CPS-53 (KpLE1) prophage; Sf6-like integrase (fragment)

NC_013892
(Xenorhabdus bovienii SS-2004)

9e-86

195) EKO11_1417
( YP_005277110.1 )

integrase family protein

NC_016902
(Escherichia coli KO11FL)

2e-85

196) UMNK88_2903
( YP_006134630.1 )

integrase

NC_017641
(Escherichia coli UMNK88)

2e-85

197) intS
( YP_006125209.1 )

prophage integrase

NC_017635
(Escherichia coli W)

2e-85

198) intS
( YP_006173930.1 )

putative integrase

NC_017664
(Escherichia coli W)

2e-85

199) O3M_07705
( YP_006769202.1 )

prophage CPS-53 integrase

NC_018650
(Escherichia coli 2009EL-2050)

3e-85

200) O3O_17880
( YP_006783329.1 )

prophage CPS-53 integrase

NC_018661
(Escherichia coli 2009EL-2071)

3e-85

201) O3K_07755
( YP_006778258.1 )

prophage CPS-53 integrase, CPS-53 (KpLE1) prophage

NC_018658
(Escherichia coli 2011C-3493)

3e-85

202) intS
( YP_002403615.1 )

prophage CPS-53 integrase; CPS-53 (KpLE1) prophage

NC_011748
(Escherichia coli 55989)

3e-85

203) ECABU_c48360
( YP_006108746.1 )

prophage P4 integrase

NC_017631
(Escherichia coli ABU 83972)

3e-85

204) UM146_21610
( YP_006113162.1 )

prophage P4 integrase

NC_017632
(Escherichia coli UM146)

3e-85

205) EKO11_4021
( YP_005279654.1 )

integrase family protein

NC_016902
(Escherichia coli KO11FL)

3e-85

206) KO11_23100
( YP_006166928.1 )

site-specific recombinase, phage integrase family protein

NC_017660
(Escherichia coli KO11FL)

3e-85

207) LY180_22530
( YP_008567507.1 )

integrase

NC_022364
(Escherichia coli LY180)

3e-85

208) ECW_m4652
( YP_006127166.1 )

putative P4-type integrase

NC_017635
(Escherichia coli W)

3e-85

209) WFL_22655
( YP_006175953.1 )

site-specific recombinase, phage integrase family protein

NC_017664
(Escherichia coli W)

3e-85

210) ECO26_3335
( YP_003230282.1 )

integrase

NC_013361
(Escherichia coli 11368)

4e-85

211) CE10_2735
( YP_006144782.1 )

CPS-53 (KpLE1) prophage prophage CPS-53 integrase

NC_017646
(Escherichia coli CE10)

6e-85

212) intS
( YP_002408455.1 )

putative prophage CPS-53 integrase; CPS-53 (KpLE1) prophage

NC_011750
(Escherichia coli IAI39)

6e-85

213) APECO78_02320
( YP_007379647.1 )

phage integrase family site specific recombinase

NC_020163
(Escherichia coli APEC O78)

8e-85

214) CE10_5017
( YP_006146968.1 )

phage integrase family site specific recombinase

NC_017646
(Escherichia coli CE10)

8e-85

215) intB
( YP_543812.1 )

prophage P4 integrase

NC_007946
(Escherichia coli UTI89)

8e-85

216) APECO1_4218
( YP_853449.1 )

phage integrase

NC_008563
(Escherichia coli APEC O1)

1e-84

217) EcDH1_1309
( YP_006091271.1 )

integrase family protein

NC_017625
(Escherichia coli DH1)

1e-84

218) intS
( YP_006129687.1 )

prophage integrase

NC_017638
(Escherichia coli DH1)

1e-84

219) E2348C_2486
( YP_002329990.1 )

integrase

NC_011601
(Escherichia coli E2348/69)

1e-84

220) ECOK1_2630
( YP_006101776.1 )

phage integrase family protein

NC_017628
(Escherichia coli IHE3034)

1e-84

221) intS
( YP_001731284.1 )

CPS-53 (KpLE1) prophage; prophage CPS-53 integrase

NC_010473
(Escherichia coli K-12)

1e-84

222) intS
( YP_002927317.1 )

CPS-53 (KpLE1) prophage; putative prophage CPS-53 integrase

NC_012759
(Escherichia coli K-12)

1e-84

223) intS
( YP_490590.1 )

prophage CPS-53 integrase

NC_007779
(Escherichia coli K-12)

1e-84

224) intS
( NP_416850.1 )

CPS-53 (KpLE1) prophage; predicted prophage CPS-53 integrase

NC_000913
(Escherichia coli K12)

1e-84

225) intS_2
( YP_008572328.1 )

Putative prophage CPS-53 integrase

NC_022370
(Escherichia coli PMV-1)

1e-84

226) intS
( YP_002392173.1 )

prophage CPS-53 integrase; CPS-53 (KpLE1) prophage

NC_011742
(Escherichia coli S88)

1e-84

227) ECs3231
( NP_311258.1 )

prophage Sf6-like integrase

NC_002695
(Escherichia coli Sakai)

1e-84

228) intS
( YP_003079150.1 )

CPS-53 (KpLE1) prophage; prophage CPS-53 integrase

NC_013008
(Escherichia coli TW14359)

1e-84

229) UM146_05080
( YP_006109933.1 )

CPS-53 (KpLE1) prophage; putative prophage CPS-53 integrase

NC_017632
(Escherichia coli UM146)

1e-84

230) intC
( YP_541631.1 )

prophage integrase

NC_007946
(Escherichia coli UTI89)

2e-84

231) ECH74115_3582
( YP_002271839.1 )

integrase

NC_011353
(Escherichia coli EC4115)

2e-84

232) intC
( NP_288921.1 )

prophage integrase

NC_002655
(Escherichia coli EDL933)

2e-84

233) CDCO157_2996
( YP_006313865.1 )

putative prophage Sf6-like integrase

NC_017906
(Escherichia coli Xuzhou21)

2e-84

234) AvCA_40500
( YP_007894968.1 )

Phage integrase

NC_021149
(Azotobacter vinelandii CA)

4e-84

235) AvCA6_40500
( YP_007900017.1 )

Phage integrase

NC_021150
(Azotobacter vinelandii CA6)

4e-84

236) Avin_40500
( YP_002801161.1 )

phage integrase

NC_012560
(Azotobacter vinelandii DJ)

4e-84

237) SSON53_14055
( YP_005457328.1 )

prophage Sf6-like integrase

NC_016822
(Shigella sonnei 53G)

5e-84

238) intC
( YP_311283.1 )

prophage Sf6-like integrase

NC_007384
(Shigella sonnei Ss046)

5e-84

239) EKO11_4043
( YP_005279675.1 )

integrase family protein

NC_016902
(Escherichia coli KO11FL)

5e-84

240) KO11_22995
( YP_006166907.1 )

hypothetical protein

NC_017660
(Escherichia coli KO11FL)

5e-84

241) LY180_22420
( YP_008567485.1 )

integrase

NC_022364
(Escherichia coli LY180)

5e-84

242) WFL_22550
( YP_006175932.1 )

hypothetical protein

NC_017664
(Escherichia coli W)

5e-84

243) ECO26_4069
( YP_003230994.1 )

integrase

NC_013361
(Escherichia coli 11368)

5e-84

244) ECUMN_3322
( YP_002414004.1 )

integrase

NC_011751
(Escherichia coli UMN026)

7e-84

245) intS
( YP_003500406.1 )

prophage integrase

NC_013941
(Escherichia coli CB9615)

1e-83

246) ECABU_c32560
( YP_006107255.1 )

site-specific recombinase

NC_017631
(Escherichia coli ABU 83972)

1e-83

247) int
( YP_859807.1 )

Int ( P4-type integrase)

NC_008563
(Escherichia coli APEC O1)

1e-83

248) CE10_3417
( YP_006145430.1 )

integrase

NC_017646
(Escherichia coli CE10)

1e-83

249) c3556
( NP_755431.1 )

prophage P4 integrase

NC_004431
(Escherichia coli CFT073)

1e-83

250) c5216
( NP_757064.1 )

prophage P4 integrase

NC_004431
(Escherichia coli CFT073)

1e-83

251) i14_3273
( YP_006155358.1 )

prophage P4 integrase

NC_017652
(Escherichia coli clone D i14)

1e-83

252) i02_3273
( YP_006150439.1 )

prophage P4 integrase

NC_017651
(Escherichia coli clone D i2)

1e-83

253) EcE24377A_3314
( YP_001464322.1 )

site-specific recombinase, phage integrase

NC_009801
(Escherichia coli E24377A)

1e-83

254) int
( YP_002400684.1 )

Prophage integrase

NC_011745
(Escherichia coli ED1a)

1e-83

255) int
( YP_006141472.1 )

Integrase

NC_017644
(Escherichia coli NA114)

1e-83

256) ECS88_4720
( YP_002394207.1 )

integrase

NC_011742
(Escherichia coli S88)

1e-83

257) ECO55CA74_14300
( YP_006159989.1 )

prophage integrase

NC_017656
(Escherichia coli RM12579)

9e-84

258) ECO111_5079
( YP_003237359.1 )

putative integrase

NC_013364
(Escherichia coli 11128)

9e-84

259) ECO26_5300
( YP_003232178.1 )

integrase

NC_013361
(Escherichia coli 11368)

9e-84

260) ECO103_3550
( YP_003223418.1 )

integrase

NC_013353
(Escherichia coli 12009)

9e-84

261) ECO103_4929
( YP_003224745.1 )

integrase

NC_013353
(Escherichia coli 12009)

9e-84

262) E2348C_3220
( YP_002330696.1 )

integrase

NC_011601
(Escherichia coli E2348/69)

9e-84

263) Q7A_2891
( YP_006297314.1 )

integrase

NC_017857
(Methylophaga sp. JAM1)

2e-83

264) EC042_3174
( YP_006097466.1 )

integrase

NC_017626
(Escherichia coli 042)

2e-83

265) EC042_4610
( YP_006098876.1 )

integrase

NC_017626
(Escherichia coli 042)

2e-83

266) O3M_04655
( YP_006768605.1 )

Prophage integrase

NC_018650
(Escherichia coli 2009EL-2050)

2e-83

267) O3O_21040
( YP_006782711.1 )

Prophage integrase

NC_018661
(Escherichia coli 2009EL-2071)

2e-83

268) O3K_04610
( YP_006777642.1 )

Prophage integrase

NC_018658
(Escherichia coli 2011C-3493)

2e-83

269) ECP_2962
( YP_670846.1 )

P4-type integrase

NC_008253
(Escherichia coli 536)

2e-83

270) int
( YP_002404232.1 )

Prophage integrase

NC_011748
(Escherichia coli 55989)

2e-83

271) EcolC_0747
( YP_001723746.1 )

integrase family protein

NC_010468
(Escherichia coli ATCC 8739)

2e-83

272) UMNK88_3667
( YP_006135366.1 )

phage integrase

NC_017641
(Escherichia coli UMNK88)

2e-83

273) intB
( YP_004950346.1 )

prophage P4 integrase

NC_016514
(Enterobacter cloacae EcWSU1)

3e-83

274) Ent638_0463
( YP_001175202.1 )

phage integrase family protein

NC_009436
(Enterobacter sp. 638)

3e-83

275) EC042_4741
( YP_006098991.1 )

integrase

NC_017626
(Escherichia coli 042)

3e-83

276) ROD_50201
( YP_003368377.1 )

integrase

NC_013716
(Citrobacter rodentium ICC168)

3e-83

277) Entcl_3878
( YP_003943402.1 )

integrase family protein

NC_014618
(Enterobacter cloacae SCF1)

3e-83

278) ECED1_3430
( YP_002399303.1 )

integrase

NC_011745
(Escherichia coli ED1a)

4e-83

279) SARI_03312
( YP_001572286.1 )

hypothetical protein

NC_010067
(Salmonella enterica RSK2980)

5e-83

280) APECO1_3534
( YP_854214.1 )

P4-like integrase

NC_008563
(Escherichia coli APEC O1)

5e-83

281) EcolC_3878
( YP_001726809.1 )

integrase family protein

NC_010468
(Escherichia coli ATCC 8739)

5e-83

282) intB
( YP_003501106.1 )

Site-specific recombinase, phage integrase family protein

NC_013941
(Escherichia coli CB9615)

5e-83

283) CE10_4872
( YP_006146828.1 )

Prophage integrase

NC_017646
(Escherichia coli CE10)

5e-83

284) ECH74115_4272
( YP_002272448.1 )

site-specific recombinase, phage integrase family protein

NC_011353
(Escherichia coli EC4115)

5e-83

285) Z4313
( NP_289539.1 )

pathogenicity island integrase

NC_002655
(Escherichia coli EDL933)

5e-83

286) ECO55CA74_17295
( YP_006160577.1 )

Site-specific recombinase, phage integrase family protein

NC_017656
(Escherichia coli RM12579)

5e-83

287) int
( YP_002392871.1 )

Prophage integrase

NC_011742
(Escherichia coli S88)

5e-83

288) ECs3843
( NP_311870.1 )

integrase

NC_002695
(Escherichia coli Sakai)

5e-83

289) ECSP_3940
( YP_003079757.1 )

pathogenicity island integrase

NC_013008
(Escherichia coli TW14359)

5e-83

290) CDCO157_3594
( YP_006314460.1 )

integrase

NC_017906
(Escherichia coli Xuzhou21)

5e-83

291) H650_18115
( YP_008109377.1 )

integrase

NC_021500
(Enterobacter sp. R4-368)

6e-83

292) int
( YP_002409310.1 )

Prophage integrase

NC_011750
(Escherichia coli IAI39)

1e-82

293) int
( YP_002389727.1 )

Prophage integrase

NC_011741
(Escherichia coli IAI1)

7e-83

294) PAGR_g3659
( YP_005994368.1 )

integrase

NC_017554
(Pantoea ananatis PA13)

8e-83

295) ECENHK_02620
( YP_006577041.1 )

phage integrase family site-specific recombinase

NC_018405
(Enterobacter cloacae ENHKU01)

1e-82

296) H650_18245
( YP_008109403.1 )

integrase

NC_021500
(Enterobacter sp. R4-368)

1e-82

297) int
( YP_002410463.1 )

Prophage integrase

NC_011750
(Escherichia coli IAI39)

1e-82

298) EAM_3037
( YP_003540101.1 )

integrase

NC_013971
(Erwinia amylovora ATCC 49946)

2e-82

299) intB
( YP_003529741.1 )

integrase

NC_013961
(Erwinia amylovora CFBP1430)

2e-82

300) ECO55CA74_24440
( YP_006161977.1 )

Prophage integrase

NC_017656
(Escherichia coli RM12579)

2e-82

301) EAE_09085
( YP_004592016.1 )

prothage integrase

NC_015663
(Enterobacter aerogenes KCTC 2190)

2e-82

302) EBL_c34780
( YP_006321045.1 )

prophage P4 integrase

NC_017910
(Escherichia blattae DSM 4481)

2e-82

303) CFSAN002050_05850
( YP_008259116.1 )

integrase

NC_021818
(Salmonella enterica CFSAN002050)

2e-82

304) ETAF_2789
( YP_005700383.1 )

Integrase

NC_017309
(Edwardsiella tarda FL6-60)

3e-82

305) SbBS512_E4814
( YP_001882951.1 )

site-specific recombinase, phage integrase family protein

NC_010658
(Shigella boydii CDC 3083-94)

3e-82

306) ETAC_14745
( YP_007630430.1 )

Prophage integrase

NC_020796
(Edwardsiella tarda C07-087)

4e-82

307) CFSAN002050_22445
( YP_008262355.1 )

integrase

NC_021818
(Salmonella enterica CFSAN002050)

4e-82

308) ECO103_5061
( YP_003224874.1 )

integrase

NC_013353
(Escherichia coli 12009)

5e-82

309) A225_0566
( YP_006496338.1 )

integrase

NC_018106
(Klebsiella oxytoca E718)

5e-82

310) CKO_03532
( YP_001455048.1 )

hypothetical protein

NC_009792
(Citrobacter koseri ATCC BAA-895)

6e-82

311) Gbem_3253
( YP_002140046.1 )

bacteriophage P4-type integrase

NC_011146
(Geobacter bemidjiensis Bem)

7e-82

312) ECO111_3718
( YP_003236059.1 )

putative integrase

NC_013364
(Escherichia coli 11128)

8e-82

313) W5S_1543
( YP_006282507.1 )

Prophage P4 integrase

NC_017845
(Pectobacterium sp. SCC3193)

2e-81

314) Gbem_2993
( YP_002139792.1 )

bacteriophage P4-type integrase

NC_011146
(Geobacter bemidjiensis Bem)

4e-81

315) GBP346_A1152
( YP_002895874.1 )

site-specific recombinase, phage integrase family

NC_012695
(Burkholderia pseudomallei MSHR346)

5e-81

316) HYPMC_0824
( YP_004674631.1 )

Integrase

NC_015717
(Hyphomicrobium sp. MC1)

1e-80

317) Neut_1125
( YP_747345.1 )

phage integrase family protein

NC_008344
(Nitrosomonas eutropha C91)

1e-80

318) Neut_1755
( YP_747954.1 )

phage integrase family protein

NC_008344
(Nitrosomonas eutropha C91)

1e-80

319) KOX_09480
( YP_005017861.1 )

phage integrase family protein

NC_016612
(Klebsiella oxytoca KCTC 1686)

8e-81

320) A11S_2095
( YP_007643514.1 )

Integrase

NC_020812
(Micavibrio aeruginosavorus EPB)

2e-80

321) Pecwa_1669
( YP_003259066.1 )

integrase

NC_013421
(Pectobacterium wasabiae WPP163)

2e-80

322) SPC_4619
( YP_002640109.1 )

integrase

NC_012125
(Salmonella enterica RKS4594)

2e-80

323) Ser39006_3432
( YP_008523814.1 )

integrase family protein

NC_022268
(Serratia sp. ATCC 39006)

2e-80

324) Galf_2041
( YP_003847811.1 )

integrase family protein

NC_014394
(Gallionella capsiferriformans ES-2)

5e-80

325) DVU1527
( YP_010746.1 )

phage integrase site specific recombinase

NC_002937
(Desulfovibrio vulgaris Hildenborough)

5e-80

326) Deval_1767
( YP_005702556.1 )

integrase family protein

NC_017310
(Desulfovibrio vulgaris RCH1)

5e-80

327) O3M_22875
( YP_006772189.1 )

Prophage integrase

NC_018650
(Escherichia coli 2009EL-2050)

7e-80

328) O3K_22970
( YP_006781250.1 )

Prophage integrase

NC_018658
(Escherichia coli 2011C-3493)

7e-80

329) int
( YP_002405550.1 )

Prophage integrase

NC_011748
(Escherichia coli 55989)

7e-80

330) SFxv_3245
( YP_005728584.1 )

Site-specific recombinase, phage integrase family protein

NC_017328
(Shigella flexneri 2002017)

7e-80

331) S4822
( NP_838459.1 )

P4-type integrase

NC_004741
(Shigella flexneri 2457T)

7e-80

332) SF2964
( NP_708738.1 )

P4-type integrase

NC_004337
(Shigella flexneri 301)

7e-80

333) KPN2242_01530
( YP_005952795.1 )

site-specific recombinase, phage integrase family protein

NC_017540
(Klebsiella pneumoniae KCTC 2242)

1e-79

334) KPK_4978
( YP_002240755.1 )

phage integrase family site-specific recombinase

NC_011283
(Klebsiella pneumoniae 342)

2e-79

335) A1122_08715
( YP_005521414.1 )

integrase

NC_017168
(Yersinia pestis A1122)

2e-79

336) YPA_2939
( YP_652846.1 )

integrase

NC_008150
(Yersinia pestis Antiqua)

2e-79

337) intB
( YP_002348329.1 )

integrase

NC_003143
(Yersinia pestis CO92)

2e-79

338) intB
( YP_005506227.1 )

integrase

NC_017154
(Yersinia pestis D106004)

2e-79

339) intB
( YP_005510085.1 )

integrase

NC_017160
(Yersinia pestis D182038)

2e-79

340) YPN_0651
( YP_646583.1 )

integrase

NC_008149
(Yersinia pestis Nepal516)

2e-79

341) intB
( YP_003569204.1 )

integrase

NC_014029
(Yersinia pestis Z176003)

2e-79

342) S70_13465
( YP_006217222.1 )

Prophage integrase

NC_017731
(Providencia stuartii MRSN 2154)

3e-79

343) YpAngola_A4051
( YP_001608341.1 )

phage integrase family site specific recombinase

NC_010159
(Yersinia pestis Angola)

3e-79

344) YpsIP31758_3540
( YP_001402494.1 )

phage integrase family site specific recombinase

NC_009708
(Yersinia pseudotuberculosis IP 31758)

3e-79

345) intB
( NP_992037.1 )

integrase

NC_005810
(Yersinia pestis 91001)

4e-79

346) intB
( NP_668085.1 )

integrase

NC_004088
(Yersinia pestis KIM)

4e-79

347) YpsIP31758_0809
( YP_001399793.1 )

phage integrase family site specific recombinase

NC_009708
(Yersinia pseudotuberculosis IP 31758)

4e-79

348) Tbd_0943
( YP_314701.1 )

integrase prophage protein

NC_007404
(Thiobacillus denitrificans ATCC 25259)

5e-79

349) S70_06120
( YP_006215787.1 )

Prophage integrase

NC_017731
(Providencia stuartii MRSN 2154)

5e-79

350) YPK_3676
( YP_001722396.1 )

integrase family protein

NC_010465
(Yersinia pseudotuberculosis YPIII)

6e-79

351) SFxv_4606
( YP_005729812.1 )

putative P4-type integrase

NC_017328
(Shigella flexneri 2002017)

7e-79

352) S4839
( NP_839619.1 )

P4-type integrase

NC_004741
(Shigella flexneri 2457T)

7e-79

353) SF4224
( NP_709936.2 )

P4-type integrase

NC_004337
(Shigella flexneri 301)

7e-79

354) AHML_14825
( YP_008044080.1 )

phage integrase

NC_021290
(Aeromonas hydrophila ML09-119)

9e-79

355) SFV_4227
( YP_691515.1 )

P4-type integrase

NC_008258
(Shigella flexneri 8401)

9e-79

356) Xaut_3444
( YP_001418330.1 )

integrase family protein

NC_009720
(Xanthobacter autotrophicus Py2)

2e-78

357) YPDSF_3248
( YP_001164578.1 )

integrase

NC_009381
(Yersinia pestis Pestoides F)

2e-78

358) Mpe_A1087
( YP_001020283.1 )

prophage CP4-like integrase

NC_008825
(Methylibium petroleiphilum PM1)

3e-78

359) intB
( YP_005625501.1 )

integrase

NC_017265
(Yersinia pestis Harbin 35)

4e-78

360) NAL212_1009
( YP_004294089.1 )

integrase family protein

NC_015222
(Nitrosomonas sp. AL212)

4e-78

361) SYN_01916
( YP_461774.1 )

DNA integration/recombination/inversion protein

NC_007759
(Syntrophus aciditrophicus SB)

6e-78

362) Ppro_2300
( YP_901965.1 )

phage integrase family protein

NC_008609
(Pelobacter propionicus DSM 2379)

6e-78

363) SARI_03082
( YP_001572064.1 )

hypothetical protein

NC_010067
(Salmonella enterica RSK2980)

6e-78

364) Dd586_0881
( YP_003332472.1 )

integrase family protein

NC_013592
(Dickeya dadantii Ech586)

1e-77

365) KN400_0440
( YP_006889485.1 )

integrase, bacteriophage P4-type

NC_017454
(Geobacter sulfurreducens KN400)

8e-78

366) intB
( YP_001242175.1 )

P4-like integrase

NC_009485
(Bradyrhizobium sp. BTAi1)

2e-77

367) A11S_1005
( YP_007642445.1 )

phage integrase

NC_020812
(Micavibrio aeruginosavorus EPB)

2e-77

368) PputW619_4347
( YP_001751196.1 )

integrase family protein

NC_010501
(Pseudomonas putida W619)

2e-77

369) SMD_1781
( YP_006184502.1 )

integrase

NC_017671
(Stenotrophomonas maltophilia D457)

2e-77

370) intB
( YP_002153152.1 )

prophage integrase

NC_010554
(Proteus mirabilis HI4320)

5e-77

371) C380_06330
( YP_006853614.1 )

phage integrase

NC_018708
(Acidovorax sp. KKS102)

5e-77

372) MU9_135
( YP_007503554.1 )

prophage integrase

NC_020418
(Morganella morganii KT)

1e-76

373) intB
( YP_005802313.1 )

protein intB

NC_017390
(Erwinia pyrifoliae DSM 12163)

6e-77

374) EpC_14570
( YP_002648472.1 )

phage integrase family protein

NC_012214
(Erwinia pyrifoliae Ep1/96)

6e-77

375) intB
( YP_001143574.1 )

phage integrase

NC_009348
(Aeromonas salmonicida A449)

7e-77

376) Dda3937_03406
( YP_003881783.1 )

Integrase

NC_014500
(Dickeya dadantii 3937)

8e-77

377) SEEB0189_19950
( YP_008310270.1 )

integrase

NC_021844
(Salmonella enterica CFSAN000189)

2e-76

378) Ent638_2887
( YP_001177603.1 )

phage integrase family protein

NC_009436
(Enterobacter sp. 638)

2e-76

379) ECOK1_4788
( YP_006103840.1 )

site-specific recombinase, phage integrase family

NC_017628
(Escherichia coli IHE3034)

4e-76

380) LHK_01737
( YP_002795731.1 )

CP4 integrase protein

NC_012559
(Laribacter hongkongensis HLHK9)

4e-76

381) intB
( YP_002405686.1 )

integrase; KpLE2 phage-like element

NC_011748
(Escherichia coli 55989)

4e-76

382) SSPA3984
( YP_002144818.1 )

integrase

NC_011147
(Salmonella enterica AKU12601)

6e-76

383) int
( YP_153333.1 )

integrase

NC_006511
(Salmonella enterica ATCC 9150)

6e-76

384) NCGM2_0360
( YP_005978635.1 )

site-specific recombinase

NC_017549
(Pseudomonas aeruginosa NCGM2.S1)

7e-76

385) PC1_0871
( YP_003016457.1 )

integrase family protein

NC_012917
(Pectobacterium carotovorum PC1)

9e-76

386) AMBLS11_09695
( YP_006824971.1 )

prophage CP4-like integrase

NC_018692
(Alteromonas macleodii Black Sea 11)

9e-76

387) NAL212_2545
( YP_004295511.1 )

integrase family protein

NC_015222
(Nitrosomonas sp. AL212)

1e-75

388) NH8B_1979
( YP_004847208.1 )

phage integrase family protein

NC_016002
(Pseudogulbenkiania sp. NH8B)

1e-75

389) SNSL254_A4836
( YP_002043726.1 )

integrase

NC_011080
(Salmonella enterica SL254)

1e-75

390) plu4477
( NP_931643.1 )

hypothetical protein

NC_005126
(Photorhabdus luminescens TTO1)

1e-75

391) KPHS_05400
( YP_005224840.1 )

putative P4-type integrase

NC_016845
(Klebsiella pneumoniae HS11286)

2e-75

392) N559_4601
( YP_008427480.1 )

P4-type integrase

NC_022082
(Klebsiella pneumoniae JM45)

2e-75

393) SN31241_8570
( YP_008358775.1 )

Integrase

NC_021902
(Salmonella enterica USMARC-S3124.1)

2e-75

394) Dret_1610
( YP_003198472.1 )

integrase family protein

NC_013223
(Desulfohalobium retbaense DSM 5692)

2e-75

395) ENC_43890
( YP_007847599.1 )

Integrase

NC_021046
(Enterobacter cloacae NCTC 9394)

2e-75

396) LHK_01566
( YP_002795563.1 )

integrase

NC_012559
(Laribacter hongkongensis HLHK9)

2e-75

397) STY4821
( NP_458899.1 )

integrase

NC_003198
(Salmonella enterica CT18)

2e-75

398) t4518
( NP_808103.1 )

integrase

NC_004631
(Salmonella enterica Ty2)

2e-75

399) TY21A_22985
( YP_007928753.1 )

integrase

NC_021176
(Salmonella enterica Ty21a)

2e-75

400) GBP346_A3075
( YP_002897757.1 )

integrase

NC_012695
(Burkholderia pseudomallei MSHR346)

2e-75

401) Nit79A3_1833
( YP_004695037.1 )

integrase

NC_015731
(Nitrosomonas sp. Is79A3)

3e-75

402) MU9_117
( YP_007503536.1 )

prophage integrase

NC_020418
(Morganella morganii KT)

4e-75

403) ETAE_3092
( YP_003297134.1 )

integrase

NC_013508
(Edwardsiella tarda EIB202)

4e-75

404) ECABU_c49370
( YP_006108845.1 )

prophage P4 integrase

NC_017631
(Escherichia coli ABU 83972)

4e-75

405) intA_4
( YP_008574436.1 )

Prophage CP4-57 integrase

NC_022370
(Escherichia coli PMV-1)

5e-75

406) Pcar_1823
( YP_006717564.1 )

integrase, bacteriophage P4-type

NC_007498
(Pelobacter carbinolicus DSM 2380)

6e-75

407) Cpha266_1627
( YP_912072.1 )

phage integrase family protein

NC_008639
(Chlorobium phaeobacteroides DSM 266)

1e-74

408) Varpa_2722
( YP_004155031.1 )

integrase family protein

NC_014931
(Variovorax paradoxus EPS)

1e-74

409) EcDH1_3727
( YP_006093621.1 )

integrase family protein

NC_017625
(Escherichia coli DH1)

1e-74

410) intB
( YP_006131525.1 )

site-specific recombinase

NC_017638
(Escherichia coli DH1)

1e-74

411) intB
( YP_001733029.1 )

KpLE2 phage-like element; integrase

NC_010473
(Escherichia coli K-12)

1e-74

412) intB
( YP_492408.1 )

integrase

NC_007779
(Escherichia coli K-12)

1e-74

413) intB
( YP_002415396.1 )

putative integrase; KpLE2 phage-like element

NC_011751
(Escherichia coli UMN026)

1e-74

414) ECO26_5435
( YP_003232308.1 )

integrase

NC_013361
(Escherichia coli 11368)

9e-75

415) ETEC_4611
( YP_006118149.1 )

putative phage integrase

NC_017633
(Escherichia coli ETEC H10407)

1e-74

416) intB
( YP_002410602.1 )

putative integrase; KpLE2 phage-like element

NC_011750
(Escherichia coli IAI39)

1e-74

417) c5371
( NP_757219.1 )

prophage P4 integrase

NC_004431
(Escherichia coli CFT073)

2e-74

418) i14_4891
( YP_006156950.1 )

prophage P4 integrase

NC_017652
(Escherichia coli clone D i14)

2e-74

419) i02_4891
( YP_006152031.1 )

prophage P4 integrase

NC_017651
(Escherichia coli clone D i2)

2e-74

420) Selin_1494
( YP_004112783.1 )

integrase family protein

NC_014836
(Desulfurispirillum indicum S5)

2e-74

421) Pecwa_0718
( YP_003258145.1 )

integrase

NC_013421
(Pectobacterium wasabiae WPP163)

2e-74

422) intB
( YP_003001820.1 )

intB

NC_012892
(Escherichia coli BL21(DE3))

2e-74

423) intB
( YP_003056695.1 )

integrase

NC_012971
(Escherichia coli BL21(DE3))

2e-74

424) intB
( YP_002400869.1 )

putative integrase; KpLE2 phage-like element

NC_011745
(Escherichia coli ED1a)

2e-74

425) ECBD_3766
( YP_003037938.1 )

integrase

NC_012947
(Escherichia coli Escherichia coli BL21-Gold(DE3)pLysS AG)

2e-74

426) intB
( YP_006171360.1 )

Prophage P4 integrase (Int(P4))

NC_017663
(Escherichia coli P12b)

2e-74

427) intB
( YP_003047305.1 )

putative integrase

NC_012967
(Escherichia coli REL606)

2e-74

428) GM18_2022
( YP_004198761.1 )

integrase family protein

NC_014973
(Geobacter sp. M18)

3e-74

429) intB
( YP_007493033.1 )

putative prophage P4 integrase

NC_020409
(Desulfovibrio piezophilus C1TLV30)

4e-74

430) Galf_1827
( YP_003847601.1 )

integrase family protein

NC_014394
(Gallionella capsiferriformans ES-2)

5e-74

431) GM18_2884
( YP_004199604.1 )

integrase family protein

NC_014973
(Geobacter sp. M18)

6e-74

432) intB
( YP_410419.1 )

prophage P4 integrase

NC_007613
(Shigella boydii Sb227)

6e-74

433) Dd1591_3702
( YP_003005986.1 )

integrase family protein

NC_012912
(Dickeya zeae Ech1591)

8e-74

434) EcolC_1237
( YP_001724230.1 )

integrase family protein

NC_010468
(Escherichia coli ATCC 8739)

2e-73

435) Glov_1135
( YP_001951377.1 )

integrase

NC_010814
(Geobacter lovleyi SZ)

2e-73

436) SPAB_03412
( YP_001589593.1 )

hypothetical protein

NC_010102
(Salmonella enterica SGSC4150; SPB7)

4e-73

437) Dd703_3541
( YP_002989121.1 )

integrase family protein

NC_012880
(Dickeya dadantii Ech703)

5e-73

438) NH8B_1001
( YP_004846247.1 )

prophage CP4-like integrase

NC_016002
(Pseudogulbenkiania sp. NH8B)

1e-72

439) Dd586_3778
( YP_003335314.1 )

integrase family protein

NC_013592
(Dickeya dadantii Ech586)

6e-72

440) MADE_1010570
( YP_004427250.1 )

integrase

NC_011138
(Alteromonas macleodii Deep ecotype)

2e-71

441) intZ
( YP_002927401.1 )

CPZ-55 prophage; putative integrase

NC_012759
(Escherichia coli K-12)

2e-71

442) intZ
( NP_416937.2 )

CPZ-55 prophage; predicted integrase

NC_000913
(Escherichia coli K12)

2e-71

443) RSc1871
( NP_519992.1 )

integrase prophage protein

NC_003295
(Ralstonia solanacearum GMI1000)

4e-71

444) intZ
( YP_001731371.1 )

CPZ-55 prophage; integrase

NC_010473
(Escherichia coli K-12)

4e-71

445) Tbd_2005
( YP_315763.1 )

cp4-like integrase

NC_007404
(Thiobacillus denitrificans ATCC 25259)

5e-71

446) Despr_0274
( YP_004193749.1 )

integrase family protein

NC_014972
(Desulfobulbus propionicus DSM 2032)

5e-71

447) amb0488
( YP_419851.1 )

integrase

NC_007626
(Magnetospirillum magneticum AMB-1)

5e-71

448) PAU_03981
( YP_003042810.1 )

p4 integrase-like protein

NC_012962
(Photorhabdus asymbiotica ATCC 43949)

7e-71

449) Ppro_1315
( YP_900993.1 )

phage integrase family protein

NC_008609
(Pelobacter propionicus DSM 2379)

2e-70

450) SBO_4322
( YP_410566.1 )

P4-type integrase

NC_007613
(Shigella boydii Sb227)

2e-70

451) lpa_00270
( YP_003617389.1 )

hypothetical protein

NC_014125
(Legionella pneumophila 2300/99 Alcoy)

2e-70

452) LPC_0202
( YP_001249546.1 )

integrase

NC_009494
(Legionella pneumophila Corby)

2e-70

453) SbBS512_E4662
( YP_001882825.1 )

site-specific recombinase, phage integrase family protein

NC_010658
(Shigella boydii CDC 3083-94)

2e-70

454) Ent638_3101
( YP_001177816.1 )

phage integrase family protein

NC_009436
(Enterobacter sp. 638)

3e-70

455) intB
( YP_003469249.1 )

KpLE2 phage-like element; P4-like integrase

NC_013892
(Xenorhabdus bovienii SS-2004)

3e-70

456) intC
( YP_001352573.1 )

prophage integrase

NC_009659
(Janthinobacterium sp. Marseille)

4e-70

457) SSON53_18230
( YP_005458150.1 )

P4-type integrase

NC_016822
(Shigella sonnei 53G)

4e-70

458) GM21_0997
( YP_003020820.1 )

integrase family protein

NC_012918
(Geobacter sp. M21)

6e-70

459) Fraau_1988
( YP_005378057.1 )

Integrase

NC_017033
(Frateuria aurantia DSM 6220)

1e-69

460) RCFBP_11461
( YP_003745377.1 )

prophage integrase

NC_014307
(Ralstonia solanacearum CFBP2957)

1e-69

461) SG1638
( YP_455318.1 )

phage integrase

NC_007712
(Sodalis glossinidius morsitans)

2e-69

462) Acife_3075
( YP_004785473.1 )

integrase family protein

NC_015942
(Acidithiobacillus ferrivorans SS3)

2e-69

463) intB
( YP_003468561.1 )

prophage like-integrase

NC_013892
(Xenorhabdus bovienii SS-2004)

2e-69

464) ESA_00630
( YP_001436750.1 )

hypothetical protein

NC_009778
(Cronobacter sakazakii ATCC BAA-894)

3e-69

465) intB
( YP_003713602.1 )

integrase

NC_014228
(Xenorhabdus nematophila ATCC 19061)

7e-69

466) UMN798_2960
( YP_005398107.1 )

bacteriophage integrase

NC_017046
(Salmonella enterica 798)

8e-69

467) SL1344_2712
( YP_005182607.1 )

bacteriophage integrase

NC_016810
(Salmonella enterica SL1344)

8e-69

468) STM474_2864
( YP_005243712.1 )

site-specific recombinase, phage integrase family

NC_016857
(Salmonella enterica ST4/74)

8e-69

469) ECA0835
( YP_048945.1 )

prophage integrase

NC_004547
(Pectobacterium atrosepticum SCRI1043)

9e-69

470) int
( YP_160175.1 )

integrase

NC_006513
(Aromatoleum aromaticum EbN1)

1e-68

471) EBL_c09420
( YP_006318568.1 )

putative phage integrase

NC_017910
(Escherichia blattae DSM 4481)

1e-68

472) SPAB_01138
( YP_001587388.1 )

hypothetical protein

NC_010102
(Salmonella enterica SGSC4150; SPB7)

1e-68

473) Pecwa_0447
( YP_003257894.1 )

integrase

NC_013421
(Pectobacterium wasabiae WPP163)

9e-69

474) Nmul_A2184
( YP_412868.1 )

Phage integrase

NC_007614
(Nitrosospira multiformis ATCC 25196)

2e-68

475) W5S_0459
( YP_006281457.1 )

P4-like integrase

NC_017845
(Pectobacterium sp. SCC3193)

2e-68

476) CFSAN001992_19740
( YP_007473660.1 )

phage integrase family protein

NC_020307
(Salmonella enterica CFSAN001992)

2e-68

477) SNSL254_A2952
( YP_002041998.1 )

phage integrase family protein

NC_011080
(Salmonella enterica SL254)

2e-68

478) SN31241_38450
( YP_008361760.1 )

Prophage CP4-57 integrase

NC_021902
(Salmonella enterica USMARC-S3124.1)

2e-68

479) A79E_1796
( YP_006635603.1 )

integrase

NC_018522
(Klebsiella pneumoniae 1084)

3e-68

480) Fraau_3064
( YP_005379074.1 )

Integrase

NC_017033
(Frateuria aurantia DSM 6220)

3e-68

481) W5S_0850
( YP_006281840.1 )

Prophage CP4-57 integrase

NC_017845
(Pectobacterium sp. SCC3193)

3e-68

482) intB
( YP_003712791.1 )

KpLE2 phage-like element; P4-like integrase

NC_014228
(Xenorhabdus nematophila ATCC 19061)

4e-68

483) SBO_4174
( YP_410429.1 )

P4-type integrase

NC_007613
(Shigella boydii Sb227)

5e-68

484) ETAE_2742
( YP_003296788.1 )

integrase

NC_013508
(Edwardsiella tarda EIB202)

6e-68

485) Dsui_1791
( YP_005028016.1 )

Integrase

NC_016616
(Dechlorosoma suillum PS)

1e-67

486) A464_4477
( YP_008325069.1 )

Integrase

NC_021870
(Salmonella bongori N268-08)

1e-67

487) YE105_C1329
( YP_004297528.1 )

putative cp4-like integrase protein

NC_015224
(Yersinia enterocolitica 105.5R(r))

2e-67

488) M301_1146
( YP_003674107.1 )

integrase family protein

NC_014207
(Methylotenera versatilis 301)

2e-67

489) H650_08995
( YP_008107625.1 )

integrase

NC_021500
(Enterobacter sp. R4-368)

3e-67

490) Pecwa_0958
( YP_003258382.1 )

integrase

NC_013421
(Pectobacterium wasabiae WPP163)

4e-67

491) ETA_03770
( YP_001906331.1 )

P4-type integrase

NC_010694
(Erwinia tasmaniensis Et1/99)

4e-67

492) PAU_03975
( YP_003042804.1 )

prophage p4 integrase

NC_012962
(Photorhabdus asymbiotica ATCC 43949)

5e-67

493) NMBM01240355_1501
( YP_005902124.1 )

Prophage CP4-57 integrase

NC_017517
(Neisseria meningitidis M01-240355)

6e-67

494) A225_4472
( YP_006500153.1 )

phage integrase

NC_018106
(Klebsiella oxytoca E718)

8e-67

495) intA
( YP_003521207.1 )

IntA

NC_013956
(Pantoea ananatis LMG 20103)

9e-67

496) ECL_03606
( YP_003614089.1 )

integrase family protein

NC_014121
(Enterobacter cloacae ATCC 13047)

1e-66

497) NMV_0809
( YP_005878233.1 )

putative prophage integrase

NC_017501
(Neisseria meningitidis 8013)

2e-66

498) A1122_19345
( YP_005523503.1 )

putative prophage integrase

NC_017168
(Yersinia pestis A1122)

2e-66

499) YpAngola_A1370
( YP_001605897.1 )

prophage CP4-57 integrase

NC_010159
(Yersinia pestis Angola)

2e-66

500) YPA_0577
( YP_650490.1 )

putative prophage integrase

NC_008150
(Yersinia pestis Antiqua)

2e-66

501) YPO1098
( YP_002346142.1 )

prophage integrase

NC_003143
(Yersinia pestis CO92)

2e-66

502) YPD4_0956
( YP_005504168.1 )

putative prophage integrase

NC_017154
(Yersinia pestis D106004)

2e-66

503) YPD8_1174
( YP_005508252.1 )

putative prophage integrase

NC_017160
(Yersinia pestis D182038)

2e-66

504) YPC_1149
( YP_005623096.1 )

putative prophage integrase

NC_017265
(Yersinia pestis Harbin 35)

2e-66

505) YPN_2899
( YP_648826.1 )

prophage integrase

NC_008149
(Yersinia pestis Nepal516)

2e-66

506) YPDSF_2598
( YP_001163939.1 )

prophage integrase

NC_009381
(Yersinia pestis Pestoides F)

2e-66

507) YPZ3_0998
( YP_003567170.1 )

putative prophage integrase

NC_014029
(Yersinia pestis Z176003)

2e-66

508) intA1
( NP_992430.1 )

prophage CP4-57 integrase

NC_005810
(Yersinia pestis 91001)

3e-66

509) intA
( NP_670380.1 )

prophage CP4-57 integrase

NC_004088
(Yersinia pestis KIM)

3e-66

510) intB
( YP_003714347.1 )

integrase

NC_014228
(Xenorhabdus nematophila ATCC 19061)

4e-66

511) Msip34_2834
( YP_003056834.1 )

integrase family protein

NC_012972
(Methylovorus glucosetrophus SIP3-4)

5e-66

512) int
( YP_002381990.1 )

phage integrase

NC_011740
(Escherichia fergusonii ATCC 35469)

5e-66

513) int
( YP_004730693.1 )

bacteriophage integrase

NC_015761
(Salmonella bongori NCTC 12419)

4e-65

514) Dsui_0218
( YP_005026479.1 )

Integrase

NC_016616
(Dechlorosoma suillum PS)

7e-65

515) Tint_0383
( YP_003642124.1 )

integrase family protein

NC_014153
(Thiomonas intermedia K12)

8e-65

516) Dtpsy_1577
( YP_002553036.1 )

integrase family protein

NC_011992
(Acidovorax ebreus TPSY)

1e-64

517) EbC_39600
( YP_003743338.1 )

integrase

NC_014306
(Erwinia billingiae Eb661)

2e-64

518) PC1_0723
( YP_003016313.1 )

integrase family protein

NC_012917
(Pectobacterium carotovorum PC1)

3e-64

519) SLG_25940
( YP_004835726.1 )

putative integrase

NC_015976
(Sphingobium sp. SYK-6)

4e-64

520) LPO_0155
( YP_006504236.1 )

Integrase

NC_018139
(Legionella pneumophila Lorraine)

5e-64

521) EcolC_1063
( YP_001724057.1 )

integrase family protein

NC_010468
(Escherichia coli ATCC 8739)

6e-64

522) G432_12985
( YP_007616912.1 )

symbiosis island integrase

NC_020561
(Sphingomonas sp. MM-1)

7e-64

523) Dda3937_01301
( YP_003881181.1 )

Integrase

NC_014500
(Dickeya dadantii 3937)

3e-63

524) EJP617_01070
( YP_005816675.1 )

hypothetical protein

NC_017445
(Erwinia sp. Ejp617)

4e-63

525) Dd703_3554
( YP_002989134.1 )

integrase family protein

NC_012880
(Dickeya dadantii Ech703)

6e-63

526) Dd1591_3717
( YP_003005999.1 )

integrase family protein

NC_012912
(Dickeya zeae Ech1591)

8e-63

527) XALc_1804
( YP_003376288.1 )

phage-related integrase

NC_013722
(Xanthomonas albilineans GPE PC73)

1e-62

528) SLG_29060
( YP_004836038.1 )

putative integrase

NC_015976
(Sphingobium sp. SYK-6)

1e-62

529) UMNK88_5213
( YP_006136842.1 )

phage integrase

NC_017641
(Escherichia coli UMNK88)

8e-63

530) ybl123
( YP_003000524.1 )

ybl123

NC_012892
(Escherichia coli BL21(DE3))

2e-62

531) Fraau_2605
( YP_005378631.1 )

Integrase

NC_017033
(Frateuria aurantia DSM 6220)

3e-62

532) mll5763
( NP_106365.1 )

symbiosis island integrase

NC_002678
(Mesorhizobium loti MAFF303099)

6e-62

533) HEAR0701
( YP_001099022.1 )

integrase

NC_009138
(Herminiimonas arsenicoxydans )

6e-62

534) plu4460
( NP_931626.1 )

hypothetical protein

NC_005126
(Photorhabdus luminescens TTO1)

1e-61

535) Alide_1445
( YP_004126093.1 )

integrase family protein

NC_014910
(Alicycliphilus denitrificans BC)

8e-62

536) SBOV27691
( YP_008506597.1 )

hypothetical protein

NC_022241
(Salmonella enterica 3114)

1e-61

537) I607_10285
( YP_008172110.1 )

phage integrase family site specific recombinase

NC_021710
(Alteromonas macleodii Ionian Sea U4)

1e-61

538) I876_10625
( YP_008196519.1 )

phage integrase family site specific recombinase

NC_021717
(Alteromonas macleodii Ionian Sea U7)

1e-61

539) I634_10495
( YP_008176212.1 )

phage integrase family site specific recombinase

NC_021712
(Alteromonas macleodii Ionian Sea U8)

1e-61

540) SG2104
( YP_455784.1 )

phage integrase

NC_007712
(Sodalis glossinidius morsitans)

3e-61

541) PSPTO_3385
( NP_793168.1 )

site-specific recombinase, phage integrase family

NC_004578
(Pseudomonas syringae DC3000)

3e-61

542) t2647
( NP_806358.2 )

hypothetical protein

NC_004631
(Salmonella enterica Ty2)

4e-61

543) TY21A_13395
( YP_007926930.1 )

integrase family protein

NC_021176
(Salmonella enterica Ty21a)

4e-61

544) Pmen_3996
( YP_001189475.1 )

phage integrase family protein

NC_009439
(Pseudomonas mendocina ymp)

5e-61

545) ELI_04005
( YP_457690.1 )

cp4-like integrase protein

NC_007722
(Erythrobacter litoralis HTCC2594)

5e-61

546) PAU_01267
( YP_003040104.1 )

prophage cp4-57 integrase

NC_012962
(Photorhabdus asymbiotica ATCC 43949)

5e-61

547) Msil_1557
( YP_002361869.1 )

integrase family protein

NC_011666
(Methylocella silvestris BL2)

9e-61

548) Dd703_3223
( YP_002988808.1 )

integrase

NC_012880
(Dickeya dadantii Ech703)

2e-60

549) XCV2217
( YP_363948.1 )

phage-related integrase

NC_007508
(Xanthomonas campestris 85-10)

3e-60

550) Xaut_2233
( YP_001417134.1 )

integrase family protein

NC_009720
(Xanthobacter autotrophicus Py2)

4e-60

551) Sala_0444
( YP_615498.1 )

phage integrase

NC_008048
(Sphingopyxis alaskensis RB2256)

1e-59

552) PP1Y_AT14494
( YP_004534168.1 )

phage integrase

NC_015580
(Novosphingobium sp. PP1Y)

2e-59

553) PCC21_004050
( YP_006645061.1 )

integrase

NC_018525
(Pectobacterium carotovorum PCC21)

5e-59

554) SBOV45841
( YP_008508356.1 )

hypothetical protein

NC_022241
(Salmonella enterica 3114)

1e-58

555) PFLU1878
( YP_002871513.1 )

putative integrase

NC_012660
(Pseudomonas fluorescens SBW25)

2e-58

556) Smlt0056
( YP_001969986.1 )

integrase

NC_010943
(Stenotrophomonas maltophilia K279a)

8e-58

557) LFML04_0012
( YP_006765226.1 )

phage integrase family protein

NC_018649
(Leptospirillum ferriphilum ML-04)

4e-57

558) Pnap_2643
( YP_982866.1 )

phage integrase family protein

NC_008781
(Polaromonas naphthalenivorans CJ2)

5e-57

559) XCV2615
( YP_364346.1 )

integrase

NC_007508
(Xanthomonas campestris 85-10)

2e-56

560) XALc_1632
( YP_003376121.1 )

phage-related integrase

NC_013722
(Xanthomonas albilineans GPE PC73)

2e-55

561) Tola_2265
( YP_002893449.1 )

integrase family protein

NC_012691
(Tolumonas auensis DSM 9187)

2e-54

562) MICA_2176
( YP_004866484.1 )

phage integrase family protein

NC_016026
(Micavibrio aeruginosavorus ARL-13)

4e-53

563) xccb100_1868
( YP_001903273.1 )

hypothetical protein

NC_010688
(Xanthomonas campestris B100)

2e-52

564) MCA0676
( YP_113189.1 )

phage integrase site specific recombinase

NC_002977
(Methylococcus capsulatus Bath)

3e-48

• Sequence Alignments

1) intC in NC_008258


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  651 bits (2460),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 394/394 (100%), Positives = 394/394 (100%), Gaps = 0/394 (0%)

Query  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60
            MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120
            LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180
            DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV  240
            TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV
Sbjct  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV  240

Query  241  RTQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHPLVFI  300
            RTQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHPLVFI
Sbjct  241  RTQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHPLVFI  300

Query  301  GRNDPRKPISKESINQAIELLGYKGRLTGHGFRHTMSTILHEQGFNSAWIEMQLAHVDKN  360
            GRNDPRKPISKESINQAIELLGYKGRLTGHGFRHTMSTILHEQGFNSAWIEMQLAHVDKN
Sbjct  301  GRNDPRKPISKESINQAIELLGYKGRLTGHGFRHTMSTILHEQGFNSAWIEMQLAHVDKN  360

Query  361  SIRDTYNHALYLDGRREMMQWYADYIDSLSSRES  394
            SIRDTYNHALYLDGRREMMQWYADYIDSLSSRES
Sbjct  361  SIRDTYNHALYLDGRREMMQWYADYIDSLSSRES  394

2) O3M_00580 in NC_018650


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  645 bits (2437),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 390/394 (99%), Positives = 391/394 (99%), Gaps = 0/394 (0%)

Query  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60
            MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQSKADRWSLRYR  120
            LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQ KADRWSLRYR
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  121  DEIIDTFEKDIFPYIGKRPIAEIKPMELLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180
            DEIIDTFEKDIFPYIGKRPIAEIKPM LLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV  240
            TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV
Sbjct  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV  240

Query  241  RTQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHPLVFI  300
            RTQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHPLVFI
Sbjct  241  RTQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHPLVFI  300

Query  301  GRNDPRKPISKESINQVIELLGYKGRLTGHGFRHTMSTILHEQGFNSAWIEMQLAHVDKN  360
            GRNDPRKPISKESINQ IELLGYKGRLTGHGFRHTMSTILHEQGFNSAWIEMQLAHVDKN
Sbjct  301  GRNDPRKPISKESINQAIELLGYKGRLTGHGFRHTMSTILHEQGFNSAWIEMQLAHVDKN  360

Query  361  SIRGTYNHALYLDGRREMMQWYADYIDSLSSRES  394
            SIR+TYNHALYLDGRREMMQWYADYIDSLSSRES
Sbjct  361  SIRDTYNHALYLDGRREMMQWYADYIDSLSSRES  394

3) O3O_25120 in NC_018661


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  645 bits (2437),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 390/394 (99%), Positives = 391/394 (99%), Gaps = 0/394 (0%)

Query  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60
            MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQSKADRWSLRYR  120
            LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQ KADRWSLRYR
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  121  DEIIDTFEKDIFPYIGKRPIAEIKPMELLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180
            DEIIDTFEKDIFPYIGKRPIAEIKPM LLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV  240
            TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV
Sbjct  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV  240

Query  241  RTQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHPLVFI  300
            RTQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHPLVFI
Sbjct  241  RTQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHPLVFI  300

Query  301  GRNDPRKPISKESINQVIELLGYKGRLTGHGFRHTMSTILHEQGFNSAWIEMQLAHVDKN  360
            GRNDPRKPISKESINQ IELLGYKGRLTGHGFRHTMSTILHEQGFNSAWIEMQLAHVDKN
Sbjct  301  GRNDPRKPISKESINQAIELLGYKGRLTGHGFRHTMSTILHEQGFNSAWIEMQLAHVDKN  360

Query  361  SIRGTYNHALYLDGRREMMQWYADYIDSLSSRES  394
            SIR+TYNHALYLDGRREMMQWYADYIDSLSSRES
Sbjct  361  SIRDTYNHALYLDGRREMMQWYADYIDSLSSRES  394

4) O3K_00550 in NC_018658


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  645 bits (2437),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 390/394 (99%), Positives = 391/394 (99%), Gaps = 0/394 (0%)

Query  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60
            MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQSKADRWSLRYR  120
            LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQ KADRWSLRYR
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  121  DEIIDTFEKDIFPYIGKRPIAEIKPMELLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180
            DEIIDTFEKDIFPYIGKRPIAEIKPM LLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV  240
            TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV
Sbjct  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV  240

Query  241  RTQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHPLVFI  300
            RTQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHPLVFI
Sbjct  241  RTQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHPLVFI  300

Query  301  GRNDPRKPISKESINQVIELLGYKGRLTGHGFRHTMSTILHEQGFNSAWIEMQLAHVDKN  360
            GRNDPRKPISKESINQ IELLGYKGRLTGHGFRHTMSTILHEQGFNSAWIEMQLAHVDKN
Sbjct  301  GRNDPRKPISKESINQAIELLGYKGRLTGHGFRHTMSTILHEQGFNSAWIEMQLAHVDKN  360

Query  361  SIRGTYNHALYLDGRREMMQWYADYIDSLSSRES  394
            SIR+TYNHALYLDGRREMMQWYADYIDSLSSRES
Sbjct  361  SIRDTYNHALYLDGRREMMQWYADYIDSLSSRES  394

5) SFxv_4026 in NC_017328


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  645 bits (2437),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 388/393 (99%), Positives = 391/393 (99%), Gaps = 0/393 (0%)

Query  11   GINDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVTL  70
            ++ DIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVTL
Sbjct  2    ALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVTL  61

Query  71   ADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYRD  130
            ADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYRD
Sbjct  62   ADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYRD  121

Query  131  EIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIVT  190
            EIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIVT
Sbjct  122  EIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIVT  181

Query  191  GRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGVR  250
            GRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGVR
Sbjct  182  GRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGVR  241

Query  251  TQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHPLVFIG  310
            TQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHPLVFIG
Sbjct  242  TQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHPLVFIG  301

Query  311  RNDPRKPISKESINQVIELLGYKGRLTGHGFRHTMSTILHEQGFNSAWIEMQLAHVDKNS  370
            RNDPRKPISKESINQ IELLGYKGRLTGHGFRHTMSTILHEQGFNSAWIEMQLAHVDKNS
Sbjct  302  RNDPRKPISKESINQAIELLGYKGRLTGHGFRHTMSTILHEQGFNSAWIEMQLAHVDKNS  361

Query  371  IRGTYNHALYLDGRREMMQWYADYIDSLSSRES  403
            IR+TYNHALYLDGRREMMQWYADYIDSLSSRES
Sbjct  362  IRDTYNHALYLDGRREMMQWYADYIDSLSSRES  394

6) S4835 in NC_004741


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  645 bits (2437),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 388/393 (99%), Positives = 391/393 (99%), Gaps = 0/393 (0%)

Query  11   GINDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVTL  70
            ++ DIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVTL
Sbjct  2    ALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVTL  61

Query  71   ADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYRD  130
            ADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYRD
Sbjct  62   ADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYRD  121

Query  131  EIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIVT  190
            EIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIVT
Sbjct  122  EIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIVT  181

Query  191  GRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGVR  250
            GRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGVR
Sbjct  182  GRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGVR  241

Query  251  TQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHPLVFIG  310
            TQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHPLVFIG
Sbjct  242  TQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHPLVFIG  301

Query  311  RNDPRKPISKESINQVIELLGYKGRLTGHGFRHTMSTILHEQGFNSAWIEMQLAHVDKNS  370
            RNDPRKPISKESINQ IELLGYKGRLTGHGFRHTMSTILHEQGFNSAWIEMQLAHVDKNS
Sbjct  302  RNDPRKPISKESINQAIELLGYKGRLTGHGFRHTMSTILHEQGFNSAWIEMQLAHVDKNS  361

Query  371  IRGTYNHALYLDGRREMMQWYADYIDSLSSRES  403
            IR+TYNHALYLDGRREMMQWYADYIDSLSSRES
Sbjct  362  IRDTYNHALYLDGRREMMQWYADYIDSLSSRES  394

7) SF3698 in NC_004337


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  645 bits (2437),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 388/393 (99%), Positives = 391/393 (99%), Gaps = 0/393 (0%)

Query  11   GINDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVTL  70
            ++ DIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVTL
Sbjct  2    ALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVTL  61

Query  71   ADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYRD  130
            ADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYRD
Sbjct  62   ADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYRD  121

Query  131  EIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIVT  190
            EIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIVT
Sbjct  122  EIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIVT  181

Query  191  GRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGVR  250
            GRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGVR
Sbjct  182  GRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGVR  241

Query  251  TQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHPLVFIG  310
            TQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHPLVFIG
Sbjct  242  TQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHPLVFIG  301

Query  311  RNDPRKPISKESINQVIELLGYKGRLTGHGFRHTMSTILHEQGFNSAWIEMQLAHVDKNS  370
            RNDPRKPISKESINQ IELLGYKGRLTGHGFRHTMSTILHEQGFNSAWIEMQLAHVDKNS
Sbjct  302  RNDPRKPISKESINQAIELLGYKGRLTGHGFRHTMSTILHEQGFNSAWIEMQLAHVDKNS  361

Query  371  IRGTYNHALYLDGRREMMQWYADYIDSLSSRES  403
            IR+TYNHALYLDGRREMMQWYADYIDSLSSRES
Sbjct  362  IRDTYNHALYLDGRREMMQWYADYIDSLSSRES  394

8) ECD_03516 in NC_012971


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  644 bits (2433),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 389/394 (99%), Positives = 391/394 (99%), Gaps = 0/394 (0%)

Query  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60
            MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLQNTFEAIAREWHQSKADRWSLRYR  120
            LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSL+NTFEAIAREWHQ KADRWSLRYR
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  121  DEIIDTFEKDIFPYIGKRPIAEIKPMELLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180
            DEIIDTFEKDIFPYIGKRPIAEIKPM LLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV  240
            TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV
Sbjct  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV  240

Query  241  RTQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHPLVFI  300
            RTQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHPLVFI
Sbjct  241  RTQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHPLVFI  300

Query  301  GRNDPRKPISKESINQVIELLGYKGRLTGHGFRHTMSTILHEQGFNSAWIEMQLAHVDKN  360
            GRNDPRKPISKESINQ IELLGYKGRLTGHGFRHTMSTILHEQGFNSAWIEMQLAHVDKN
Sbjct  301  GRNDPRKPISKESINQAIELLGYKGRLTGHGFRHTMSTILHEQGFNSAWIEMQLAHVDKN  360

Query  361  SIRGTYNHALYLDGRREMMQWYADYIDSLSSRES  394
            SIR+TYNHALYLDGRREMMQWYADYIDSLSSRES
Sbjct  361  SIRDTYNHALYLDGRREMMQWYADYIDSLSSRES  394

9) ybl160 in NC_012892


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  644 bits (2433),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 389/394 (99%), Positives = 391/394 (99%), Gaps = 0/394 (0%)

Query  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60
            MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLQNTFEAIAREWHQSKADRWSLRYR  120
            LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSL+NTFEAIAREWHQ KADRWSLRYR
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  121  DEIIDTFEKDIFPYIGKRPIAEIKPMELLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180
            DEIIDTFEKDIFPYIGKRPIAEIKPM LLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV  240
            TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV
Sbjct  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV  240

Query  241  RTQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHPLVFI  300
            RTQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHPLVFI
Sbjct  241  RTQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHPLVFI  300

Query  301  GRNDPRKPISKESINQVIELLGYKGRLTGHGFRHTMSTILHEQGFNSAWIEMQLAHVDKN  360
            GRNDPRKPISKESINQ IELLGYKGRLTGHGFRHTMSTILHEQGFNSAWIEMQLAHVDKN
Sbjct  301  GRNDPRKPISKESINQAIELLGYKGRLTGHGFRHTMSTILHEQGFNSAWIEMQLAHVDKN  360

Query  361  SIRGTYNHALYLDGRREMMQWYADYIDSLSSRES  394
            SIR+TYNHALYLDGRREMMQWYADYIDSLSSRES
Sbjct  361  SIRDTYNHALYLDGRREMMQWYADYIDSLSSRES  394

10) ECBD_0066 in NC_012947


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  644 bits (2433),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 389/394 (99%), Positives = 391/394 (99%), Gaps = 0/394 (0%)

Query  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60
            MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLQNTFEAIAREWHQSKADRWSLRYR  120
            LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSL+NTFEAIAREWHQ KADRWSLRYR
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  121  DEIIDTFEKDIFPYIGKRPIAEIKPMELLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180
            DEIIDTFEKDIFPYIGKRPIAEIKPM LLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV  240
            TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV
Sbjct  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV  240

Query  241  RTQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHPLVFI  300
            RTQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHPLVFI
Sbjct  241  RTQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHPLVFI  300

Query  301  GRNDPRKPISKESINQVIELLGYKGRLTGHGFRHTMSTILHEQGFNSAWIEMQLAHVDKN  360
            GRNDPRKPISKESINQ IELLGYKGRLTGHGFRHTMSTILHEQGFNSAWIEMQLAHVDKN
Sbjct  301  GRNDPRKPISKESINQAIELLGYKGRLTGHGFRHTMSTILHEQGFNSAWIEMQLAHVDKN  360

Query  361  SIRGTYNHALYLDGRREMMQWYADYIDSLSSRES  394
            SIR+TYNHALYLDGRREMMQWYADYIDSLSSRES
Sbjct  361  SIRDTYNHALYLDGRREMMQWYADYIDSLSSRES  394

11) ECB_03516 in NC_012967


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  644 bits (2433),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 389/394 (99%), Positives = 391/394 (99%), Gaps = 0/394 (0%)

Query  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60
            MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLQNTFEAIAREWHQSKADRWSLRYR  120
            LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSL+NTFEAIAREWHQ KADRWSLRYR
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  121  DEIIDTFEKDIFPYIGKRPIAEIKPMELLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180
            DEIIDTFEKDIFPYIGKRPIAEIKPM LLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV  240
            TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV
Sbjct  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV  240

Query  241  RTQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHPLVFI  300
            RTQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHPLVFI
Sbjct  241  RTQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHPLVFI  300

Query  301  GRNDPRKPISKESINQVIELLGYKGRLTGHGFRHTMSTILHEQGFNSAWIEMQLAHVDKN  360
            GRNDPRKPISKESINQ IELLGYKGRLTGHGFRHTMSTILHEQGFNSAWIEMQLAHVDKN
Sbjct  301  GRNDPRKPISKESINQAIELLGYKGRLTGHGFRHTMSTILHEQGFNSAWIEMQLAHVDKN  360

Query  361  SIRGTYNHALYLDGRREMMQWYADYIDSLSSRES  394
            SIR+TYNHALYLDGRREMMQWYADYIDSLSSRES
Sbjct  361  SIRDTYNHALYLDGRREMMQWYADYIDSLSSRES  394

12) intC in NC_004431


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  644 bits (2433),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 389/394 (99%), Positives = 391/394 (99%), Gaps = 0/394 (0%)

Query  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60
            MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLQNTFEAIAREWHQSKADRWSLRYR  120
            LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSL+NTFEAIAREWHQ KADRWSLRYR
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  121  DEIIDTFEKDIFPYIGKRPIAEIKPMELLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180
            DEIIDTFEKDIFPYIGKRPIAEIKPM LLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV  240
            TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV
Sbjct  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV  240

Query  241  RTQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHPLVFI  300
            RTQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHPLVFI
Sbjct  241  RTQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHPLVFI  300

Query  301  GRNDPRKPISKESINQVIELLGYKGRLTGHGFRHTMSTILHEQGFNSAWIEMQLAHVDKN  360
            GRNDPRKPISKESINQ IELLGYKGRLTGHGFRHTMSTILHEQGFNSAWIEMQLAHVDKN
Sbjct  301  GRNDPRKPISKESINQAIELLGYKGRLTGHGFRHTMSTILHEQGFNSAWIEMQLAHVDKN  360

Query  361  SIRGTYNHALYLDGRREMMQWYADYIDSLSSRES  394
            SIR+TYNHALYLDGRREMMQWYADYIDSLSSRES
Sbjct  361  SIRDTYNHALYLDGRREMMQWYADYIDSLSSRES  394

13) ECIAI39_4188 in NC_011750


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  644 bits (2433),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 389/394 (99%), Positives = 391/394 (99%), Gaps = 0/394 (0%)

Query  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60
            MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQISLKNTFEAIAREWHQSKADRWSLRYR  120
            LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQ+SLKNTFEAIAREWHQ KADRWSLRYR
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  121  DEIIDTFEKDIFPYIGKRPIAEIKPMELLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180
            DEIIDTFEKDIFPYIGKRPIAEIKPM LLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV  240
            TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV
Sbjct  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV  240

Query  241  RTQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHPLVFI  300
            RTQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHPLVFI
Sbjct  241  RTQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHPLVFI  300

Query  301  GRNDPRKPISKESINQVIELLGYKGRLTGHGFRHTMSTILHEQGFNSAWIEMQLAHVDKN  360
            GRNDPRKPISKESINQ IELLGYKGRLTGHGFRHTMSTILHEQGFNSAWIEMQLAHVDKN
Sbjct  301  GRNDPRKPISKESINQAIELLGYKGRLTGHGFRHTMSTILHEQGFNSAWIEMQLAHVDKN  360

Query  361  SIRGTYNHALYLDGRREMMQWYADYIDSLSSRES  394
            SIR+TYNHALYLDGRREMMQWYADYIDSLSSRES
Sbjct  361  SIRDTYNHALYLDGRREMMQWYADYIDSLSSRES  394

14) CE10_4227 in NC_017646


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  644 bits (2433),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 389/394 (99%), Positives = 391/394 (99%), Gaps = 0/394 (0%)

Query  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60
            MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQISLKNTFEAIAREWHQSKADRWSLRYR  120
            LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQ+SLKNTFEAIAREWHQ KADRWSLRYR
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  121  DEIIDTFEKDIFPYIGKRPIAEIKPMELLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180
            DEIIDTFEKDIFPYIGKRPIAEIKPM LLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV  240
            TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV
Sbjct  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV  240

Query  241  RTQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHPLVFI  300
            RTQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHPLVFI
Sbjct  241  RTQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHPLVFI  300

Query  301  GRNDPRKPISKESINQVIELLGYKGRLTGHGFRHTMSTILHEQGFNSAWIEMQLAHVDKN  360
            GRNDPRKPISKESINQ IELLGYKGRLTGHGFRHTMSTILHEQGFNSAWIEMQLAHVDKN
Sbjct  301  GRNDPRKPISKESINQAIELLGYKGRLTGHGFRHTMSTILHEQGFNSAWIEMQLAHVDKN  360

Query  361  SIRGTYNHALYLDGRREMMQWYADYIDSLSSRES  394
            SIR+TYNHALYLDGRREMMQWYADYIDSLSSRES
Sbjct  361  SIRDTYNHALYLDGRREMMQWYADYIDSLSSRES  394

15) SSON_3744 in NC_007384


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  644 bits (2434),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 389/394 (99%), Positives = 391/394 (99%), Gaps = 0/394 (0%)

Query  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60
            MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   LAGAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQSKADRWSLRYR  120
            LA+AREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQ KADRWSLRYR
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  121  DEIIDTFEKDIFPYIGKRPIAEIKPMELLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180
            DEIIDTFEKDIFPYIGKRPIAEIKPM LLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV  240
            TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV
Sbjct  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV  240

Query  241  RTQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHPLVFI  300
            RTQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHPLVFI
Sbjct  241  RTQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHPLVFI  300

Query  301  GRNDPRKPISKESINQVIELLGYKGRLTGHGFRHTMSTILHEQGFNSAWIEMQLAHVDKN  360
            GRNDPRKPISKESINQ IELLGYKGRLTGHGFRHTMSTILHEQGFNSAWIEMQLAHVDKN
Sbjct  301  GRNDPRKPISKESINQAIELLGYKGRLTGHGFRHTMSTILHEQGFNSAWIEMQLAHVDKN  360

Query  361  SIRGTYNHALYLDGRREMMQWYADYIDSLSSRES  394
            SIR+TYNHALYLDGRREMMQWYADYIDSLSSRES
Sbjct  361  SIRDTYNHALYLDGRREMMQWYADYIDSLSSRES  394

16) ETEC_3899 in NC_017633


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  630 bits (2380),  Expect = 0.0, Method: Compositional matrix adjust.
 Identities = 378/394 (96%), Positives = 385/394 (98%), Gaps = 0/394 (0%)

Query  1    MALTDIKVKTAKPKEKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60
            MALTDIKVKTAKPK+KPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   LADAREKRSEARKILAAGGNPGVAKKEEKIAQQMSLKNTFEAIAREWHQSKADRWSLRYR  120
            LADAREKRSEARK+LAAGG+PG AKKEEKIAQQMSLKNTFEAIAREWHQ KADRWSLRYR
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  121  DEIIDTFEKDIFPYIGKRPIAEIKPMELLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180
            DEIIDTFEKDIFPYIGKRPIAEIKPM LLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  181  TGRADYNPAPDLACALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV  240
            TGRADYNPAPDLA ALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV
Sbjct  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV  240

Query  241  RTQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIALFKQLEPITKHHPLVFI  300
            RTQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVI LFKQLEPI+KHHPLVFI
Sbjct  241  RTQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHPLVFI  300

Query  301  GRNDPRKPISKESINQVIELLGYKGRLTGHGFRHTMSTILHEQGFNSAWIEMQLAHVDKN  360
            GRNDPRKPISKESINQ IELLGYKGRLTGHGFRHTMSTILHEQGFNSAWIEMQLAHVDKN
Sbjct  301  GRNDPRKPISKESINQAIELLGYKGRLTGHGFRHTMSTILHEQGFNSAWIEMQLAHVDKN  360

Query  361  AIRGTYNHAQYLDGRREMMQWYADYIDSLYKQES  394
            +IR+TYNHA YLDGRREMMQWYADYIDSL  +ES
Sbjct  361  SIRDTYNHALYLDGRREMMQWYADYIDSLSSRES  394

17) ECABU_c41260 in NC_017631


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  625 bits (2361),  Expect = 1e-180, Method: Compositional matrix adjust.
 Identities = 371/390 (96%), Positives = 383/390 (99%), Gaps = 0/390 (0%)

Query  1    MALTDVKVKTAKPKEKPYKLADSGGMYLLINANGSKYWRMKYRFAGKEKMLSIGVYPDVT  60
            MALTD+KVKTAKPK+KPYKLAD+GGMYLLIN+NGSKYWRMKYRFAGKEKMLSIGVYPDVT
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   LADAREKRSEARKILAAGGDPGEAKKEEKIALQMSLKNTFEAVAREWHQSKADRWSLRYR  120
            LADAREKRSEARK+LAAGGDPGEAKKEEKIA QMSLKNTFEA+AREWHQ KADRWSLRYR
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  121  DEIIDTFEKDIFPYIGKRPIAEIKPMELLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180
            DEIIDTFEKDIFPYIGKRPIAEIKPM LLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV  240
            TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV
Sbjct  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV  240

Query  241  RTQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVITLFKQLEPISKHHPLVFI  300
            RTQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVI LFKQLEPISKHHPLVFI
Sbjct  241  RTQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHPLVFI  300

Query  301  GRNDPRKPISKESVNQVIELLGYKGRLTGHGFRHTMSTILHEKGFNSAWIETQLAHVDKN  360
            GRNDPRKPISKES+NQ IELLGYKGRLTGHGFRHTMSTILHE+GFNSAWIE QLAHVDKN
Sbjct  301  GRNDPRKPISKESINQAIELLGYKGRLTGHGFRHTMSTILHEQGFNSAWIEMQLAHVDKN  360

Query  361  AIRGTYNHAQYLDGRREMMQWYADYIGSLT  390
            +IR+TYNHA YLDGRREMMQWYADYI+SL+
Sbjct  361  SIRDTYNHALYLDGRREMMQWYADYIDSLS  390

18) intC in NC_017652


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  625 bits (2361),  Expect = 1e-180, Method: Compositional matrix adjust.
 Identities = 371/390 (96%), Positives = 383/390 (99%), Gaps = 0/390 (0%)

Query  1    MALTDVKVKTAKPKEKPYKLADSGGMYLLINANGSKYWRMKYRFAGKEKMLSIGVYPDVT  60
            MALTD+KVKTAKPK+KPYKLAD+GGMYLLIN+NGSKYWRMKYRFAGKEKMLSIGVYPDVT
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   LADAREKRSEARKILAAGGDPGEAKKEEKIALQMSLKNTFEAVAREWHQSKADRWSLRYR  120
            LADAREKRSEARK+LAAGGDPGEAKKEEKIA QMSLKNTFEA+AREWHQ KADRWSLRYR
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  121  DEIIDTFEKDIFPYIGKRPIAEIKPMELLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180
            DEIIDTFEKDIFPYIGKRPIAEIKPM LLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV  240
            TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV
Sbjct  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV  240

Query  241  RTQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVITLFKQLEPISKHHPLVFI  300
            RTQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVI LFKQLEPISKHHPLVFI
Sbjct  241  RTQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHPLVFI  300

Query  301  GRNDPRKPISKESVNQVIELLGYKGRLTGHGFRHTMSTILHEKGFNSAWIETQLAHVDKN  360
            GRNDPRKPISKES+NQ IELLGYKGRLTGHGFRHTMSTILHE+GFNSAWIE QLAHVDKN
Sbjct  301  GRNDPRKPISKESINQAIELLGYKGRLTGHGFRHTMSTILHEQGFNSAWIEMQLAHVDKN  360

Query  361  AIRGTYNHAQYLDGRREMMQWYADYIGSLT  390
            +IR+TYNHA YLDGRREMMQWYADYI+SL+
Sbjct  361  SIRDTYNHALYLDGRREMMQWYADYIDSLS  390

19) intC in NC_017651


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  625 bits (2361),  Expect = 1e-180, Method: Compositional matrix adjust.
 Identities = 371/390 (96%), Positives = 383/390 (99%), Gaps = 0/390 (0%)

Query  1    MALTDVKVKTAKPKEKPYKLADSGGMYLLINANGSKYWRMKYRFAGKEKMLSIGVYPDVT  60
            MALTD+KVKTAKPK+KPYKLAD+GGMYLLIN+NGSKYWRMKYRFAGKEKMLSIGVYPDVT
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   LADAREKRSEARKILAAGGDPGEAKKEEKIALQMSLKNTFEAVAREWHQSKADRWSLRYR  120
            LADAREKRSEARK+LAAGGDPGEAKKEEKIA QMSLKNTFEA+AREWHQ KADRWSLRYR
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  121  DEIIDTFEKDIFPYIGKRPIAEIKPMELLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180
            DEIIDTFEKDIFPYIGKRPIAEIKPM LLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV  240
            TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV
Sbjct  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV  240

Query  241  RTQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVITLFKQLEPISKHHPLVFI  300
            RTQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVI LFKQLEPISKHHPLVFI
Sbjct  241  RTQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHPLVFI  300

Query  301  GRNDPRKPISKESVNQVIELLGYKGRLTGHGFRHTMSTILHEKGFNSAWIETQLAHVDKN  360
            GRNDPRKPISKES+NQ IELLGYKGRLTGHGFRHTMSTILHE+GFNSAWIE QLAHVDKN
Sbjct  301  GRNDPRKPISKESINQAIELLGYKGRLTGHGFRHTMSTILHEQGFNSAWIEMQLAHVDKN  360

Query  361  AIRGTYNHAQYLDGRREMMQWYADYIGSLT  390
            +IR+TYNHA YLDGRREMMQWYADYI+SL+
Sbjct  361  SIRDTYNHALYLDGRREMMQWYADYIDSLS  390

20) intL in NC_002655


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  625 bits (2362),  Expect = 1e-180, Method: Compositional matrix adjust.
 Identities = 373/391 (96%), Positives = 382/391 (98%), Gaps = 0/391 (0%)

Query  1    MALTDVKVKTAKPKERPYKLADGGGMYLLINANGSKYWRMKYRFAGKEKMLSIGVYPDVT  60
            MALTD+KVKTAKPK++PYKLADGGGMYLLIN+NGSKYWRMKYRFAGKEKMLSIGVYPDVT
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   LADAREKRSEARKILAAGGDPGEAKKEEKIALQMSLKNTFEAVAREWHQTKADRWSLRYR  120
            LADAREKRSEARK+LAAGGDPGEAKKEEKIA QMSLKNTFEA+AREWHQ KADRWSLRYR
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  121  DEIIDTFEKDIFPYIGKRPIAEIKPMELLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180
            DEIIDTFEKDIFPYIGKRPIAEIKPM LLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLTDLAGYTGSIITKTATQIIMLTGV  240
            TGRADYNPAPDLASALATPKKVHFPFLTANELPHFL DLAGYTGSIITKTATQIIMLTGV
Sbjct  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV  240

Query  241  RTQELRFAHWEDIDFEAKLWEIPAEVMKMKRPHIVPPSEQVIALFKQLEPISKHHPLVFI  300
            RTQELRFA+WEDIDFE+KLWEIPAEVMKMKRPHIVP SEQVI LFKQLEPISKHHPLVFI
Sbjct  241  RTQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHPLVFI  300

Query  301  GRNDPRKPISKESINQVIELLGYKGRLTGHGFRHTMSTILHEQGFNSAWIEMQLAHVDKN  360
            GRNDPRKPISKESINQ IELLGYKGRLTGHGFRHTMSTILHEQGFNSAWIEMQLAHVDKN
Sbjct  301  GRNDPRKPISKESINQAIELLGYKGRLTGHGFRHTMSTILHEQGFNSAWIEMQLAHVDKN  360

Query  361  SIRGTYNHAQYLDGRREMMQWYADYIDSLSE  391
            SIR+TYNHA YLDGRREMMQWYADYIDSLS 
Sbjct  361  SIRDTYNHALYLDGRREMMQWYADYIDSLSS  391

21) ECs4534 in NC_002695


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  625 bits (2362),  Expect = 1e-180, Method: Compositional matrix adjust.
 Identities = 373/391 (96%), Positives = 382/391 (98%), Gaps = 0/391 (0%)

Query  1    MALTDVKVKTAKPKERPYKLADGGGMYLLINANGSKYWRMKYRFAGKEKMLSIGVYPDVT  60
            MALTD+KVKTAKPK++PYKLADGGGMYLLIN+NGSKYWRMKYRFAGKEKMLSIGVYPDVT
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   LADAREKRSEARKILAAGGDPGEAKKEEKIALQMSLKNTFEAVAREWHQTKADRWSLRYR  120
            LADAREKRSEARK+LAAGGDPGEAKKEEKIA QMSLKNTFEA+AREWHQ KADRWSLRYR
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  121  DEIIDTFEKDIFPYIGKRPIAEIKPMELLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180
            DEIIDTFEKDIFPYIGKRPIAEIKPM LLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLTDLAGYTGSIITKTATQIIMLTGV  240
            TGRADYNPAPDLASALATPKKVHFPFLTANELPHFL DLAGYTGSIITKTATQIIMLTGV
Sbjct  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV  240

Query  241  RTQELRFAHWEDIDFEAKLWEIPAEVMKMKRPHIVPPSEQVIALFKQLEPISKHHPLVFI  300
            RTQELRFA+WEDIDFE+KLWEIPAEVMKMKRPHIVP SEQVI LFKQLEPISKHHPLVFI
Sbjct  241  RTQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHPLVFI  300

Query  301  GRNDPRKPISKESINQVIELLGYKGRLTGHGFRHTMSTILHEQGFNSAWIEMQLAHVDKN  360
            GRNDPRKPISKESINQ IELLGYKGRLTGHGFRHTMSTILHEQGFNSAWIEMQLAHVDKN
Sbjct  301  GRNDPRKPISKESINQAIELLGYKGRLTGHGFRHTMSTILHEQGFNSAWIEMQLAHVDKN  360

Query  361  SIRGTYNHAQYLDGRREMMQWYADYIDSLSE  391
            SIR+TYNHA YLDGRREMMQWYADYIDSLS 
Sbjct  361  SIRDTYNHALYLDGRREMMQWYADYIDSLSS  391

22) intL in NC_013008


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  625 bits (2362),  Expect = 1e-180, Method: Compositional matrix adjust.
 Identities = 373/391 (96%), Positives = 382/391 (98%), Gaps = 0/391 (0%)

Query  1    MALTDVKVKTAKPKERPYKLADGGGMYLLINANGSKYWRMKYRFAGKEKMLSIGVYPDVT  60
            MALTD+KVKTAKPK++PYKLADGGGMYLLIN+NGSKYWRMKYRFAGKEKMLSIGVYPDVT
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   LADAREKRSEARKILAAGGDPGEAKKEEKIALQMSLKNTFEAVAREWHQTKADRWSLRYR  120
            LADAREKRSEARK+LAAGGDPGEAKKEEKIA QMSLKNTFEA+AREWHQ KADRWSLRYR
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  121  DEIIDTFEKDIFPYIGKRPIAEIKPMELLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180
            DEIIDTFEKDIFPYIGKRPIAEIKPM LLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLTDLAGYTGSIITKTATQIIMLTGV  240
            TGRADYNPAPDLASALATPKKVHFPFLTANELPHFL DLAGYTGSIITKTATQIIMLTGV
Sbjct  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV  240

Query  241  RTQELRFAHWEDIDFEAKLWEIPAEVMKMKRPHIVPPSEQVIALFKQLEPISKHHPLVFI  300
            RTQELRFA+WEDIDFE+KLWEIPAEVMKMKRPHIVP SEQVI LFKQLEPISKHHPLVFI
Sbjct  241  RTQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHPLVFI  300

Query  301  GRNDPRKPISKESINQVIELLGYKGRLTGHGFRHTMSTILHEQGFNSAWIEMQLAHVDKN  360
            GRNDPRKPISKESINQ IELLGYKGRLTGHGFRHTMSTILHEQGFNSAWIEMQLAHVDKN
Sbjct  301  GRNDPRKPISKESINQAIELLGYKGRLTGHGFRHTMSTILHEQGFNSAWIEMQLAHVDKN  360

Query  361  SIRGTYNHAQYLDGRREMMQWYADYIDSLSE  391
            SIR+TYNHA YLDGRREMMQWYADYIDSLS 
Sbjct  361  SIRDTYNHALYLDGRREMMQWYADYIDSLSS  391

23) ECO55CA74_21080 in NC_017656


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  625 bits (2362),  Expect = 1e-180, Method: Compositional matrix adjust.
 Identities = 373/391 (96%), Positives = 382/391 (98%), Gaps = 0/391 (0%)

Query  1    MALTDVKVKTAKPKERPYKLADGGGMYLLINANGSKYWRMKYRFAGKEKMLSIGVYPDVT  60
            MALTD+KVKTAKPK++PYKLADGGGMYLLIN+NGSKYWRMKYRFAGKEKMLSIGVYPDVT
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   LADAREKRSEARKILAAGGDPGEAKKEEKIALQMSLKNTFEAVAREWHQTKADRWSLRYR  120
            LADAREKRSEARK+LAAGGDPGEAKKEEKIA QMSLKNTFEA+AREWHQ KADRWSLRYR
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  121  DEIIDTFEKDIFPYIGKRPIAEIKPMELLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180
            DEIIDTFEKDIFPYIGKRPIAEIKPM LLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLTDLAGYTGSIITKTATQIIMLTGV  240
            TGRADYNPAPDLASALATPKKVHFPFLTANELPHFL DLAGYTGSIITKTATQIIMLTGV
Sbjct  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV  240

Query  241  RTQELRFAHWEDIDFEAKLWEIPAEVMKMKRPHIVPPSEQVIALFKQLEPISKHHPLVFI  300
            RTQELRFA+WEDIDFE+KLWEIPAEVMKMKRPHIVP SEQVI LFKQLEPISKHHPLVFI
Sbjct  241  RTQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHPLVFI  300

Query  301  GRNDPRKPISKESINQVIELLGYKGRLTGHGFRHTMSTILHEQGFNSAWIEMQLAHVDKN  360
            GRNDPRKPISKESINQ IELLGYKGRLTGHGFRHTMSTILHEQGFNSAWIEMQLAHVDKN
Sbjct  301  GRNDPRKPISKESINQAIELLGYKGRLTGHGFRHTMSTILHEQGFNSAWIEMQLAHVDKN  360

Query  361  SIRGTYNHAQYLDGRREMMQWYADYIDSLSE  391
            SIR+TYNHA YLDGRREMMQWYADYIDSLS 
Sbjct  361  SIRDTYNHALYLDGRREMMQWYADYIDSLSS  391

24) CDCO157_4272 in NC_017906


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  625 bits (2362),  Expect = 1e-180, Method: Compositional matrix adjust.
 Identities = 373/391 (96%), Positives = 382/391 (98%), Gaps = 0/391 (0%)

Query  1    MALTDVKVKTAKPKERPYKLADGGGMYLLINANGSKYWRMKYRFAGKEKMLSIGVYPDVT  60
            MALTD+KVKTAKPK++PYKLADGGGMYLLIN+NGSKYWRMKYRFAGKEKMLSIGVYPDVT
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   LADAREKRSEARKILAAGGDPGEAKKEEKIALQMSLKNTFEAVAREWHQTKADRWSLRYR  120
            LADAREKRSEARK+LAAGGDPGEAKKEEKIA QMSLKNTFEA+AREWHQ KADRWSLRYR
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  121  DEIIDTFEKDIFPYIGKRPIAEIKPMELLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180
            DEIIDTFEKDIFPYIGKRPIAEIKPM LLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLTDLAGYTGSIITKTATQIIMLTGV  240
            TGRADYNPAPDLASALATPKKVHFPFLTANELPHFL DLAGYTGSIITKTATQIIMLTGV
Sbjct  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV  240

Query  241  RTQELRFAHWEDIDFEAKLWEIPAEVMKMKRPHIVPPSEQVIALFKQLEPISKHHPLVFI  300
            RTQELRFA+WEDIDFE+KLWEIPAEVMKMKRPHIVP SEQVI LFKQLEPISKHHPLVFI
Sbjct  241  RTQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHPLVFI  300

Query  301  GRNDPRKPISKESINQVIELLGYKGRLTGHGFRHTMSTILHEQGFNSAWIEMQLAHVDKN  360
            GRNDPRKPISKESINQ IELLGYKGRLTGHGFRHTMSTILHEQGFNSAWIEMQLAHVDKN
Sbjct  301  GRNDPRKPISKESINQAIELLGYKGRLTGHGFRHTMSTILHEQGFNSAWIEMQLAHVDKN  360

Query  361  SIRGTYNHAQYLDGRREMMQWYADYIDSLSE  391
            SIR+TYNHA YLDGRREMMQWYADYIDSLS 
Sbjct  361  SIRDTYNHALYLDGRREMMQWYADYIDSLSS  391

25) ECH74115_5032 in NC_011353


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  624 bits (2357),  Expect = 3e-180, Method: Compositional matrix adjust.
 Identities = 373/391 (96%), Positives = 382/391 (98%), Gaps = 0/391 (0%)

Query  25   MALTDVKVKTAKPKERPYKLADGGGMYLLINANGSKYWRMKYRFAGKEKMLSIGVYPDVT  84
            MALTD+KVKTAKPK++PYKLADGGGMYLLIN+NGSKYWRMKYRFAGKEKMLSIGVYPDVT
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  85   LADAREKRSEARKILAAGGDPGEAKKEEKIALQMSLKNTFEAVAREWHQTKADRWSLRYR  144
            LADAREKRSEARK+LAAGGDPGEAKKEEKIA QMSLKNTFEA+AREWHQ KADRWSLRYR
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  145  DEIIDTFEKDIFPYIGKRPIAEIKPMELLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  204
            DEIIDTFEKDIFPYIGKRPIAEIKPM LLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  205  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLTDLAGYTGSIITKTATQIIMLTGV  264
            TGRADYNPAPDLASALATPKKVHFPFLTANELPHFL DLAGYTGSIITKTATQIIMLTGV
Sbjct  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV  240

Query  265  RTQELRFAHWEDIDFEAKLWEIPAEVMKMKRPHIVPPSEQVIALFKQLEPISKHHPLVFI  324
            RTQELRFA+WEDIDFE+KLWEIPAEVMKMKRPHIVP SEQVI LFKQLEPISKHHPLVFI
Sbjct  241  RTQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHPLVFI  300

Query  325  GRNDPRKPISKESINQVIELLGYKGRLTGHGFRHTMSTILHEQGFNSAWIEMQLAHVDKN  384
            GRNDPRKPISKESINQ IELLGYKGRLTGHGFRHTMSTILHEQGFNSAWIEMQLAHVDKN
Sbjct  301  GRNDPRKPISKESINQAIELLGYKGRLTGHGFRHTMSTILHEQGFNSAWIEMQLAHVDKN  360

Query  385  SIRGTYNHAQYLDGRREMMQWYADYIDSLSE  415
            SIR+TYNHA YLDGRREMMQWYADYIDSLS 
Sbjct  361  SIRDTYNHALYLDGRREMMQWYADYIDSLSS  391

26) intL in NC_013941


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  624 bits (2357),  Expect = 3e-180, Method: Compositional matrix adjust.
 Identities = 373/391 (96%), Positives = 382/391 (98%), Gaps = 0/391 (0%)

Query  25   MALTDVKVKTAKPKERPYKLADGGGMYLLINANGSKYWRMKYRFAGKEKMLSIGVYPDVT  84
            MALTD+KVKTAKPK++PYKLADGGGMYLLIN+NGSKYWRMKYRFAGKEKMLSIGVYPDVT
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  85   LADAREKRSEARKILAAGGDPGEAKKEEKIALQMSLKNTFEAVAREWHQTKADRWSLRYR  144
            LADAREKRSEARK+LAAGGDPGEAKKEEKIA QMSLKNTFEA+AREWHQ KADRWSLRYR
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  145  DEIIDTFEKDIFPYIGKRPIAEIKPMELLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  204
            DEIIDTFEKDIFPYIGKRPIAEIKPM LLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  205  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLTDLAGYTGSIITKTATQIIMLTGV  264
            TGRADYNPAPDLASALATPKKVHFPFLTANELPHFL DLAGYTGSIITKTATQIIMLTGV
Sbjct  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV  240

Query  265  RTQELRFAHWEDIDFEAKLWEIPAEVMKMKRPHIVPPSEQVIALFKQLEPISKHHPLVFI  324
            RTQELRFA+WEDIDFE+KLWEIPAEVMKMKRPHIVP SEQVI LFKQLEPISKHHPLVFI
Sbjct  241  RTQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHPLVFI  300

Query  325  GRNDPRKPISKESINQVIELLGYKGRLTGHGFRHTMSTILHEQGFNSAWIEMQLAHVDKN  384
            GRNDPRKPISKESINQ IELLGYKGRLTGHGFRHTMSTILHEQGFNSAWIEMQLAHVDKN
Sbjct  301  GRNDPRKPISKESINQAIELLGYKGRLTGHGFRHTMSTILHEQGFNSAWIEMQLAHVDKN  360

Query  385  SIRGTYNHAQYLDGRREMMQWYADYIDSLSE  415
            SIR+TYNHA YLDGRREMMQWYADYIDSLS 
Sbjct  361  SIRDTYNHALYLDGRREMMQWYADYIDSLSS  391

27) ECP_3765 in NC_008253


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  614 bits (2321),  Expect = 2e-177, Method: Compositional matrix adjust.
 Identities = 368/392 (94%), Positives = 381/392 (98%), Gaps = 0/392 (0%)

Query  1    MALTDIKVKTVKPKDKPYKLADGSGMYLLINTNGSKYWRMKYRFAGKEKMLSLGVYPDVT  60
            MALTDIKVKT KPKDKPYKLADG+GMYLLINTNGSKYWRMKYRFAGKEKMLS+GVYPDVT
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   LADARQKRSEARKILAAGGDPGEVKKEEKIALQMSLKNTFEAIAREWHRSKADRWSLRYR  120
            LADAR+KRSEARK+LAAGGDPGE KKEEKIA QMSLKNTFEAIAREWH+ KADRWSLRYR
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  121  DEIIDTFEKDIFPYLGKRPIAEIKPMELLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180
            DEIIDTFEKDIFPY+GKRPIAEIKPM LLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV  240
            TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV
Sbjct  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV  240

Query  241  RTQELRFAHWEDINLEKKLWEIPAEVMKMKRPHIVPLSEQVITLFKQLEPISKHYPLVFI  300
            RTQELRFA+WEDI++E KLWEIPAEVMKMKRPHIVPLSEQVI LFKQLEPISKH PLVFI
Sbjct  241  RTQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHPLVFI  300

Query  301  GRNDPRKPISKESINQVIELIGYKGRLTGHGFRHTMSTILHEQGFNSAWIETQLAHVDKN  360
            GRNDPRKPISKESINQ IEL+GYKGRLTGHGFRHTMSTILHEQGFNSAWIE QLAHVDKN
Sbjct  301  GRNDPRKPISKESINQAIELLGYKGRLTGHGFRHTMSTILHEQGFNSAWIEMQLAHVDKN  360

Query  361  SIRGTYNHAQYLDGRREMMQWYADYIDSLASQ  392
            SIR+TYNHA YLDGRREMMQWYADYIDSL+S+
Sbjct  361  SIRDTYNHALYLDGRREMMQWYADYIDSLSSR  392

28) SSON53_21650 in NC_016822


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  558 bits (2108),  Expect = 1e-160, Method: Compositional matrix adjust.
 Identities = 337/341 (99%), Positives = 338/341 (99%), Gaps = 0/341 (0%)

Query  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60
            MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQSKADRWSLRYR  120
            LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQ KADRWSLRYR
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  121  DEIIDTFEKDIFPYIGKRPIAEIKPMELLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180
            DEIIDTFEKDIFPYIGKRPIAEIKPM LLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV  240
            TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV
Sbjct  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV  240

Query  241  RTQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHPLVFI  300
            RTQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHPLVFI
Sbjct  241  RTQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHPLVFI  300

Query  301  GRNDPRKPISKESINQVIELLGYKGRLTGHGFRHTMSTILR  341
            GRNDPRKPISKESINQ IELLGYKGRLTGHGFRHTMSTIL+
Sbjct  301  GRNDPRKPISKESINQAIELLGYKGRLTGHGFRHTMSTILH  341

29) YE4117 in NC_008800


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  539 bits (2034),  Expect = 9e-155, Method: Compositional matrix adjust.
 Identities = 299/390 (77%), Positives = 356/390 (92%), Gaps = 0/390 (0%)

Query  1    MKLNARQVETAKQKEKSYKLTDGGGLYLEVSASGAKYWRMKYRYGGKEKRIAFGVYPHVS  60
            M L   +V TAK K+K+YKL+DGGG+YL ++++G+KYWRMKYR++GKEK +++GVYP+V+
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   LADARQKRETAKKLLASGTDPGETKKAEKLAQKIAMENSFELMAREWHKNKADRWSLRYR  120
            LADAR+KR  A+KLLA+G DPGE+KK EK+AQ++++ N+FE +AREWH+ KADRWSLRYR
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  121  EEIIDTFEKDIFPFIGRRPIADIKPMELLETLKRMEKRGALEKMRKVRQRCGEVFRYAII  180
            +EIIDTFEKDIFP+IG+RPIA+IKPM LLE+L++MEKRGALEKMRKVRQRCGEVFRYAI+
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  181  TGRAEYNPAPDLAGALQTHKKQHLPFLTAQELPYFLRDLAGYTGSIITKTATRIIMLTGV  240
            TGRA+YNPAPDLA+AL T KK H+PFLTA+ELP FL DLAGYTGSIITKTAT+IIMLTGV
Sbjct  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV  240

Query  241  RTQELRFARWEDLDLDKGLWHIPPEHMKMKRPHVVPLSIQVITAFKQLHPLTHHYPLVFI  300
            RTQELRFARWED+D++  LW+IP+E MKMKRPH+VPLS QVI  FKQL+P++ H PLVFI
Sbjct  241  RTQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHPLVFI  300

Query  301  GRNDHRKPISKESINQVIELLGYKGRLTGHGFRHTMSTILHEQGYNSAWIETQLAHVDKN  360
            GRND RKPISKESINQ IELLGYKGRLTGHGFRHTMSTILHEQG+NSAWIE QLAHVDKN
Sbjct  301  GRNDPRKPISKESINQAIELLGYKGRLTGHGFRHTMSTILHEQGFNSAWIEMQLAHVDKN  360

Query  361  SIRGTYNHAQYLDGRQEMLQWYSDYMDSLE  390
            SIR+TYNHA YLDGR+EM+QWY+DY+DSL 
Sbjct  361  SIRDTYNHALYLDGRREMMQWYADYIDSLS  390

30) YPTB3886 in NC_006155


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  526 bits (1984),  Expect = 8e-151, Method: Compositional matrix adjust.
 Identities = 324/389 (84%), Positives = 362/389 (94%), Gaps = 0/389 (0%)

Query  1    MPLTDIKVKTAKPIDKAYKLTDGGGMYLLVKPNGSKYWRLKYRFVGKEKMLSIGVYPDVS  60
            M+LTDIKVKTAKP DK+YKL+DGGGMYLL++ NGSKYWR+KYRF GKEKMLSIGVYPDV+
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   LADARQKRDEARKVLAAGGDPGEVKKADKLAQKLSSENTFEAIAREWHKQKADRWSLRYR  120
            LADAR+KR EARK+LAAGGDPGE KK +K+AQ++S  NTFEAIAREWH+ KADRWSLRYR
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  121  DEIIDTFEKDIFPYLGRRPIAEIKPMelletlrrlekrGALEKMRKVRQRCGEVFRYAIV  180
            DEIIDTFEKDIFPY+G+RPIAEIKPM LLE+LR++EKRGALEKMRKVRQRCGEVFRYAIV
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  181  TGRAEYNpapdlatalatpKKTHFPFLTAEELPYFIRDLAGYTGSVITKTATQIIMQTGV  240
            TGRA+YNPAPDLA+ALATPKK HFPFLTA+ELP F+ DLAGYTGS+ITKTATQIIM TGV
Sbjct  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV  240

Query  241  RTQELRFARWEDIDFEKRLWEIPSEVIKMKRPHIVPLSEQVVELFQSLKPITGMYPLVFI  300
            RTQELRFARWEDIDFE +LWEIP+EV+KMKRPHIVPLSEQV+ LF+ L PI+   PLVFI
Sbjct  241  RTQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHPLVFI  300

Query  301  GRNDRAKPISKESVNQVIELLGYKGRLTGHGFRHTMSTILHEQGFNSAWIETQLAHVDKN  360
            GRND  KPISKES+NQ IELLGYKGRLTGHGFRHTMSTILHEQGFNSAWIE QLAHVDKN
Sbjct  301  GRNDPRKPISKESINQAIELLGYKGRLTGHGFRHTMSTILHEQGFNSAWIEMQLAHVDKN  360

Query  361  AIRGTYNHAHYLEGRREMMQWYGDNLESM  389
            +IR+TYNHA YL+GRREMMQWY+D ++S+
Sbjct  361  SIRDTYNHALYLDGRREMMQWYADYIDSL  389

31) YPTS_4103 in NC_010634


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  526 bits (1984),  Expect = 8e-151, Method: Compositional matrix adjust.
 Identities = 324/389 (84%), Positives = 362/389 (94%), Gaps = 0/389 (0%)

Query  1    MPLTDIKVKTAKPIDKAYKLTDGGGMYLLVKPNGSKYWRLKYRFVGKEKMLSIGVYPDVS  60
            M+LTDIKVKTAKP DK+YKL+DGGGMYLL++ NGSKYWR+KYRF GKEKMLSIGVYPDV+
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   LADARQKRDEARKVLAAGGDPGEVKKADKLAQKLSSENTFEAIAREWHKQKADRWSLRYR  120
            LADAR+KR EARK+LAAGGDPGE KK +K+AQ++S  NTFEAIAREWH+ KADRWSLRYR
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  121  DEIIDTFEKDIFPYLGRRPIAEIKPMelletlrrlekrGALEKMRKVRQRCGEVFRYAIV  180
            DEIIDTFEKDIFPY+G+RPIAEIKPM LLE+LR++EKRGALEKMRKVRQRCGEVFRYAIV
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  181  TGRAEYNpapdlatalatpKKTHFPFLTAEELPYFIRDLAGYTGSVITKTATQIIMQTGV  240
            TGRA+YNPAPDLA+ALATPKK HFPFLTA+ELP F+ DLAGYTGS+ITKTATQIIM TGV
Sbjct  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV  240

Query  241  RTQELRFARWEDIDFEKRLWEIPSEVIKMKRPHIVPLSEQVVELFQSLKPITGMYPLVFI  300
            RTQELRFARWEDIDFE +LWEIP+EV+KMKRPHIVPLSEQV+ LF+ L PI+   PLVFI
Sbjct  241  RTQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHPLVFI  300

Query  301  GRNDRAKPISKESVNQVIELLGYKGRLTGHGFRHTMSTILHEQGFNSAWIETQLAHVDKN  360
            GRND  KPISKES+NQ IELLGYKGRLTGHGFRHTMSTILHEQGFNSAWIE QLAHVDKN
Sbjct  301  GRNDPRKPISKESINQAIELLGYKGRLTGHGFRHTMSTILHEQGFNSAWIEMQLAHVDKN  360

Query  361  AIRGTYNHAHYLEGRREMMQWYGDNLESM  389
            +IR+TYNHA YL+GRREMMQWY+D ++S+
Sbjct  361  SIRDTYNHALYLDGRREMMQWYADYIDSL  389

32) EAE_06555 in NC_015663


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  524 bits (1978),  Expect = 3e-150, Method: Compositional matrix adjust.
 Identities = 314/389 (81%), Positives = 358/389 (93%), Gaps = 0/389 (0%)

Query  1    MKLTARQVDTAKPKEKPYKLSDGGGLYLEVATSGSRYWRLKYRYAGKEKRLAFGVYPEVS  60
            M LT  +V TAKPK+KPYKL+DGGG+YL + T+GS+YWR+KYR+AGKEK L++GVYP+V+
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   LaeardkreaakkVLAAGNDPGEVKKAEKIAQKLGFENTFEAIAREWHQVRADRWSLRYR  120
            LA+AR+KR  A+K+LAAG DPGE KK EKIAQ++++ NTFEAIAREWHQ++ADRWSLRYR
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  121  EEIIDTFEKDVFPYIGKRPIAEIKPMELLETLRRMEKRGALEKMRKVRQRCGEVFRHAIV  180
            +EIIDTFEKD+FPYIGKRPIAEIKPM LLE+LR+MEKRGALEKMRKVRQRCGEVFR AIV
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  181  TGRAEYNpapdlatalatpKKTHFPFLTAEELPHFLKDLAGYTGSIITKTATQIIMLTGV  240
            TGRA+YNPAPDLA+ALATPKK HFPFLTA+ELPHFL+DLAGYTGSIITKTATQIIMLTGV
Sbjct  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV  240

Query  241  RTQELRFARWEDINFEKRLWEIPAEVMKMKRPHIVPMSDQVVALFESLKPITGLYPLVFI  300
            RTQELRFARWEDI+FE +LWEIPAEVMKMKRPHIVP+S+QV+ LF  L PI+   PLVFI
Sbjct  241  RTQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHPLVFI  300

Query  301  GRNDRTKPISKESINQVIELLGYKGRVTGHGFRHTMSTILHEEGFDSAWIETQLAHVDKN  360
            GRND  KPISKESINQ IELLGYKGR+TGHGFRHTMSTILHE+GF+SAWIE QLAHVDKN
Sbjct  301  GRNDPRKPISKESINQAIELLGYKGRLTGHGFRHTMSTILHEQGFNSAWIEMQLAHVDKN  360

Query  361  AIRGAYNHAQYLDGRKEMMQWYADYITHL  389
            +IR++YNHA YLDGR+EMMQWYADYI  L
Sbjct  361  SIRDTYNHALYLDGRREMMQWYADYIDSL  389

33) P12B_c3788 in NC_017663


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  521 bits (1965),  Expect = 2e-149, Method: Compositional matrix adjust.
 Identities = 319/388 (83%), Positives = 359/388 (93%), Gaps = 0/388 (0%)

Query  1    MKLTVRQIDTAKPKEKPYKLSDGGGLYLEVTTNGSRYWRLKYRYAGKEKRLAFGVYPEVS  60
            M LT  ++ TAKPK+KPYKL+DGGG+YL + TNGS+YWR+KYR+AGKEK L++GVYP+V+
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   laearekreaakkllSAGSDPGELKKAEKIAQKLNYKNTFEAIAREWHQLRADRWSLRYR  120
            LA+AREKR  A+KLL+AG+DPGE KK EKIAQ+++ KNTFEAIAREWHQL+ADRWSLRYR
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  121  DEIIDTFEKDIFPYIGKRPIAEIKPMELLETLRRMEKRGALEKMRKVRQRCGEVFRHAIV  180
            DEIIDTFEKDIFPYIGKRPIAEIKPM LLE+LR+MEKRGALEKMRKVRQRCGEVFR AIV
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  181  TGRAEYNpapdlatalatpKKTHFPFLTAEELPHFLRDLAGYTGSVITKTATQIIMLTGV  240
            TGRA+YNPAPDLA+ALATPKK HFPFLTA+ELPHFL DLAGYTGS+ITKTATQIIMLTGV
Sbjct  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV  240

Query  241  RTQELRFARWEDINFEKRLWEIPAEVMKMKRPHIVPMSDQVVQLFGSLKPITGLNPLVFV  300
            RTQELRFARWEDI+FE +LWEIPAEVMKMKRPHIVP+S+QV+ LF  L PI+  +PLVF+
Sbjct  241  RTQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHPLVFI  300

Query  301  GRNDRTKPISKESVNQVIELLGYKGRLTGHGFRHTMSTILHEEGFNSAWIETQLAHVDKN  360
            GRND  KPISKES+NQ IELLGYKGRLTGHGFRHTMSTILHE+GFNSAWIE QLAHVDKN
Sbjct  301  GRNDPRKPISKESINQAIELLGYKGRLTGHGFRHTMSTILHEQGFNSAWIEMQLAHVDKN  360

Query  361  AIRGTYNHAQYLEGRREMMQWYADYITS  388
            +IR+TYNHA YL+GRREMMQWYADYI S
Sbjct  361  SIRDTYNHALYLDGRREMMQWYADYIDS  388

34) plu0125 in NC_005126


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  518 bits (1954),  Expect = 2e-148, Method: Compositional matrix adjust.
 Identities = 316/394 (81%), Positives = 361/394 (92%), Gaps = 0/394 (0%)

Query  1    MKLTVRQIDTAKPKEKPYKLSDGGGLYLEVTTNGSRYWRLKYRYAGKEKCLAFGVYPEVS  60
            M LT  ++ TAKPK+KPYKL+DGGG+YL + TNGS+YWR+KYR+AGKEK L++GVYP+V+
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   LAQarekreaakkllSAGSDLGELKKAEKIAQKLNYDNTFEAIAREWHQLRADRWSLRYR  120
            LA+AREKR  A+KLL+AG+D GE KK EKIAQ+++  NTFEAIAREWHQL+ADRWSLRYR
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  121  DEIIDTFEKDIFPYIGKRPIAEIKPMELLETLRRMEKRGALEKMRKVRRRCGEVFRHAIV  180
            DEIIDTFEKDIFPYIGKRPIAEIKPM LLE+LR+MEKRGALEKMRKVR+RCGEVFR AIV
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  181  TGRAEYNpapdlatalatpKKTHFPFLTAEELPHFLKDLAGYTGSVITKTATQIIMLTGV  240
            TGRA+YNPAPDLA+ALATPKK HFPFLTA+ELPHFL+DLAGYTGS+ITKTATQIIMLTGV
Sbjct  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV  240

Query  241  RTQELRFARWEDINFEKRLWEIPAEVMKMKRPHIVPMSDQVVELFESLKPITGLYPLVFV  300
            RTQELRFARWEDI+FE +LWEIPAEVMKMKRPHIVP+S+QV+ LF  L PI+   PLVF+
Sbjct  241  RTQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHPLVFI  300

Query  301  GRNDRTKPISKESVNQVIELLGYKGRLTGHGFRHTMSTILHEEGFNSAWIETQLAHVDKN  360
            GRND  KPISKES+NQ IELLGYKGRLTGHGFRHTMSTILHE+GFNSAWIE QLAHVDKN
Sbjct  301  GRNDPRKPISKESINQAIELLGYKGRLTGHGFRHTMSTILHEQGFNSAWIEMQLAHVDKN  360

Query  361  AIRGTYNHAQYLEGRREMMQWYSDYIVSLPEDNT  394
            +IR+TYNHA YL+GRREMMQWY+DYI SL+  ++
Sbjct  361  SIRDTYNHALYLDGRREMMQWYADYIDSLSSRES  394

35) KO11_04405 in NC_017660


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  517 bits (1950),  Expect = 4e-148, Method: Compositional matrix adjust.
 Identities = 313/389 (81%), Positives = 359/389 (93%), Gaps = 0/389 (0%)

Query  1    MKLTVRQIDTAKPKEKPYKLSDGGGLYLEVTTNGSRYWRLKYRYAGKEKRLAFGVYPEVS  60
            M LT  ++ TAKPK+KPYKL+DGGG+YL + TNGS+YWR+KYR+AGKEK L++GVYP+V+
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   laearekreaakkllSAGSDPGELKKAEKIAQKLNYENTFEAIAREWHHLRADRWSLRYR  120
            LA+AREKR  A+KLL+AG+DPGE KK EKIAQ+++  NTFEAIAREWH+L+ADRWSLRYR
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  121  DEIIDTFEKDIFPYIGKRPIAEIKPMELLETLRRMEKRGALEKMRKVRQRCGEVFRHAIV  180
            DEIIDTFEKDIFPYIGKRPIAEIKPM LLE+LR+MEKRGALEKMRKVRQRCGEVFR AIV
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  181  TGRAEYNpapdlatalatpKKTHFPFLTAEELPHFLRDLSGYTGSVITKTATQIIMLTGV  240
            TGRA+YNPAPDLA+ALATPKK HFPFLTA+ELPHFL DL+GYTGS+ITKTATQIIMLTGV
Sbjct  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV  240

Query  241  RTQELRFARWEDINFEKRLWEIPAEVMKMKRPHIVPMSDQVVELFKSLKPITGLYPLVFV  300
            RTQELRFARWEDI+FE +LWEIPAEVMKMKRPHIVP+S+QV+ LFK L PI+   PLVF+
Sbjct  241  RTQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHPLVFI  300

Query  301  GRNDRTKPISKESVNQVIELLGYKGRLTGHGFRHTMSTILHEEGFNSAWIETQLAHVDKN  360
            GRND  KPISKES+NQ IELLGYKGRLTGHGFRHTMSTILHE+GFNSAWIE QLAHVDKN
Sbjct  301  GRNDPRKPISKESINQAIELLGYKGRLTGHGFRHTMSTILHEQGFNSAWIEMQLAHVDKN  360

Query  361  AIRGTYNHAQYLEGRKVMMQWYGNYLNSL  389
            +IR+TYNHA YL+GR+ MMQWY++Y++SL
Sbjct  361  SIRDTYNHALYLDGRREMMQWYADYIDSL  389

36) EKO11_0064 in NC_016902


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  517 bits (1950),  Expect = 4e-148, Method: Compositional matrix adjust.
 Identities = 313/389 (81%), Positives = 359/389 (93%), Gaps = 0/389 (0%)

Query  1    MKLTVRQIDTAKPKEKPYKLSDGGGLYLEVTTNGSRYWRLKYRYAGKEKRLAFGVYPEVS  60
            M LT  ++ TAKPK+KPYKL+DGGG+YL + TNGS+YWR+KYR+AGKEK L++GVYP+V+
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   laearekreaakkllSAGSDPGELKKAEKIAQKLNYENTFEAIAREWHHLRADRWSLRYR  120
            LA+AREKR  A+KLL+AG+DPGE KK EKIAQ+++  NTFEAIAREWH+L+ADRWSLRYR
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  121  DEIIDTFEKDIFPYIGKRPIAEIKPMELLETLRRMEKRGALEKMRKVRQRCGEVFRHAIV  180
            DEIIDTFEKDIFPYIGKRPIAEIKPM LLE+LR+MEKRGALEKMRKVRQRCGEVFR AIV
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  181  TGRAEYNpapdlatalatpKKTHFPFLTAEELPHFLRDLSGYTGSVITKTATQIIMLTGV  240
            TGRA+YNPAPDLA+ALATPKK HFPFLTA+ELPHFL DL+GYTGS+ITKTATQIIMLTGV
Sbjct  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV  240

Query  241  RTQELRFARWEDINFEKRLWEIPAEVMKMKRPHIVPMSDQVVELFKSLKPITGLYPLVFV  300
            RTQELRFARWEDI+FE +LWEIPAEVMKMKRPHIVP+S+QV+ LFK L PI+   PLVF+
Sbjct  241  RTQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHPLVFI  300

Query  301  GRNDRTKPISKESVNQVIELLGYKGRLTGHGFRHTMSTILHEEGFNSAWIETQLAHVDKN  360
            GRND  KPISKES+NQ IELLGYKGRLTGHGFRHTMSTILHE+GFNSAWIE QLAHVDKN
Sbjct  301  GRNDPRKPISKESINQAIELLGYKGRLTGHGFRHTMSTILHEQGFNSAWIEMQLAHVDKN  360

Query  361  AIRGTYNHAQYLEGRKVMMQWYGNYLNSL  389
            +IR+TYNHA YL+GR+ MMQWY++Y++SL
Sbjct  361  SIRDTYNHALYLDGRREMMQWYADYIDSL  389

37) LY180_18845 in NC_022364


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  517 bits (1950),  Expect = 4e-148, Method: Compositional matrix adjust.
 Identities = 313/389 (81%), Positives = 359/389 (93%), Gaps = 0/389 (0%)

Query  1    MKLTVRQIDTAKPKEKPYKLSDGGGLYLEVTTNGSRYWRLKYRYAGKEKRLAFGVYPEVS  60
            M LT  ++ TAKPK+KPYKL+DGGG+YL + TNGS+YWR+KYR+AGKEK L++GVYP+V+
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   laearekreaakkllSAGSDPGELKKAEKIAQKLNYENTFEAIAREWHHLRADRWSLRYR  120
            LA+AREKR  A+KLL+AG+DPGE KK EKIAQ+++  NTFEAIAREWH+L+ADRWSLRYR
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  121  DEIIDTFEKDIFPYIGKRPIAEIKPMELLETLRRMEKRGALEKMRKVRQRCGEVFRHAIV  180
            DEIIDTFEKDIFPYIGKRPIAEIKPM LLE+LR+MEKRGALEKMRKVRQRCGEVFR AIV
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  181  TGRAEYNpapdlatalatpKKTHFPFLTAEELPHFLRDLSGYTGSVITKTATQIIMLTGV  240
            TGRA+YNPAPDLA+ALATPKK HFPFLTA+ELPHFL DL+GYTGS+ITKTATQIIMLTGV
Sbjct  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV  240

Query  241  RTQELRFARWEDINFEKRLWEIPAEVMKMKRPHIVPMSDQVVELFKSLKPITGLYPLVFV  300
            RTQELRFARWEDI+FE +LWEIPAEVMKMKRPHIVP+S+QV+ LFK L PI+   PLVF+
Sbjct  241  RTQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHPLVFI  300

Query  301  GRNDRTKPISKESVNQVIELLGYKGRLTGHGFRHTMSTILHEEGFNSAWIETQLAHVDKN  360
            GRND  KPISKES+NQ IELLGYKGRLTGHGFRHTMSTILHE+GFNSAWIE QLAHVDKN
Sbjct  301  GRNDPRKPISKESINQAIELLGYKGRLTGHGFRHTMSTILHEQGFNSAWIEMQLAHVDKN  360

Query  361  AIRGTYNHAQYLEGRKVMMQWYGNYLNSL  389
            +IR+TYNHA YL+GR+ MMQWY++Y++SL
Sbjct  361  SIRDTYNHALYLDGRREMMQWYADYIDSL  389

38) ECW_m3936 in NC_017635


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  517 bits (1950),  Expect = 4e-148, Method: Compositional matrix adjust.
 Identities = 313/389 (81%), Positives = 359/389 (93%), Gaps = 0/389 (0%)

Query  1    MKLTVRQIDTAKPKEKPYKLSDGGGLYLEVTTNGSRYWRLKYRYAGKEKRLAFGVYPEVS  60
            M LT  ++ TAKPK+KPYKL+DGGG+YL + TNGS+YWR+KYR+AGKEK L++GVYP+V+
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   laearekreaakkllSAGSDPGELKKAEKIAQKLNYENTFEAIAREWHHLRADRWSLRYR  120
            LA+AREKR  A+KLL+AG+DPGE KK EKIAQ+++  NTFEAIAREWH+L+ADRWSLRYR
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  121  DEIIDTFEKDIFPYIGKRPIAEIKPMELLETLRRMEKRGALEKMRKVRQRCGEVFRHAIV  180
            DEIIDTFEKDIFPYIGKRPIAEIKPM LLE+LR+MEKRGALEKMRKVRQRCGEVFR AIV
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  181  TGRAEYNpapdlatalatpKKTHFPFLTAEELPHFLRDLSGYTGSVITKTATQIIMLTGV  240
            TGRA+YNPAPDLA+ALATPKK HFPFLTA+ELPHFL DL+GYTGS+ITKTATQIIMLTGV
Sbjct  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV  240

Query  241  RTQELRFARWEDINFEKRLWEIPAEVMKMKRPHIVPMSDQVVELFKSLKPITGLYPLVFV  300
            RTQELRFARWEDI+FE +LWEIPAEVMKMKRPHIVP+S+QV+ LFK L PI+   PLVF+
Sbjct  241  RTQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHPLVFI  300

Query  301  GRNDRTKPISKESVNQVIELLGYKGRLTGHGFRHTMSTILHEEGFNSAWIETQLAHVDKN  360
            GRND  KPISKES+NQ IELLGYKGRLTGHGFRHTMSTILHE+GFNSAWIE QLAHVDKN
Sbjct  301  GRNDPRKPISKESINQAIELLGYKGRLTGHGFRHTMSTILHEQGFNSAWIEMQLAHVDKN  360

Query  361  AIRGTYNHAQYLEGRKVMMQWYGNYLNSL  389
            +IR+TYNHA YL+GR+ MMQWY++Y++SL
Sbjct  361  SIRDTYNHALYLDGRREMMQWYADYIDSL  389

39) WFL_19235 in NC_017664


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  517 bits (1950),  Expect = 4e-148, Method: Compositional matrix adjust.
 Identities = 313/389 (81%), Positives = 359/389 (93%), Gaps = 0/389 (0%)

Query  1    MKLTVRQIDTAKPKEKPYKLSDGGGLYLEVTTNGSRYWRLKYRYAGKEKRLAFGVYPEVS  60
            M LT  ++ TAKPK+KPYKL+DGGG+YL + TNGS+YWR+KYR+AGKEK L++GVYP+V+
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   laearekreaakkllSAGSDPGELKKAEKIAQKLNYENTFEAIAREWHHLRADRWSLRYR  120
            LA+AREKR  A+KLL+AG+DPGE KK EKIAQ+++  NTFEAIAREWH+L+ADRWSLRYR
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  121  DEIIDTFEKDIFPYIGKRPIAEIKPMELLETLRRMEKRGALEKMRKVRQRCGEVFRHAIV  180
            DEIIDTFEKDIFPYIGKRPIAEIKPM LLE+LR+MEKRGALEKMRKVRQRCGEVFR AIV
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  181  TGRAEYNpapdlatalatpKKTHFPFLTAEELPHFLRDLSGYTGSVITKTATQIIMLTGV  240
            TGRA+YNPAPDLA+ALATPKK HFPFLTA+ELPHFL DL+GYTGS+ITKTATQIIMLTGV
Sbjct  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV  240

Query  241  RTQELRFARWEDINFEKRLWEIPAEVMKMKRPHIVPMSDQVVELFKSLKPITGLYPLVFV  300
            RTQELRFARWEDI+FE +LWEIPAEVMKMKRPHIVP+S+QV+ LFK L PI+   PLVF+
Sbjct  241  RTQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHPLVFI  300

Query  301  GRNDRTKPISKESVNQVIELLGYKGRLTGHGFRHTMSTILHEEGFNSAWIETQLAHVDKN  360
            GRND  KPISKES+NQ IELLGYKGRLTGHGFRHTMSTILHE+GFNSAWIE QLAHVDKN
Sbjct  301  GRNDPRKPISKESINQAIELLGYKGRLTGHGFRHTMSTILHEQGFNSAWIEMQLAHVDKN  360

Query  361  AIRGTYNHAQYLEGRKVMMQWYGNYLNSL  389
            +IR+TYNHA YL+GR+ MMQWY++Y++SL
Sbjct  361  SIRDTYNHALYLDGRREMMQWYADYIDSL  389

40) SMWW4_v1c00920 in NC_020211


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  503 bits (1897),  Expect = 7e-144, Method: Compositional matrix adjust.
 Identities = 279/390 (72%), Positives = 341/390 (88%), Gaps = 0/390 (0%)

Query  1    MLLTDIQIRRSKPQEKPYTLNDGQGLSLLINTDGSKGWRFRYRYAGKAKLMSFGTYPLVT  60
            M LTDI+++ +KP++KPY L DG G+ LLINT+GSK WR +YR+AGK K++S+G YP VT
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   LADAREKRGEARKQVANGIDPVAEKKAQKLARKLSVENSFEAISREWHTNKANRWTLAYR  120
            LADAREKR+EARK +A G DP   KK +K+A+++S+ N+FEAI+REWH  KA+RW+L YR
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  121  EEIMRTFEQDVFPYIGQRPIAEIKPLELLEVLRRIEKRGALEKTRKVRQRCGEVFRYAII  180
            +EI+ TFE+D+FPYIG+RPIAEIKP+ LLE LR++EKRGALEK RKVRQRCGEVFRYAI+
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  181  TGRAEYNPAPDLASALAVPKQKHHPFLSAEELPYFVKDLEGYTGSIITKNAAKIVMLTGV  240
            TGRA+YNPAPDLASALA PK+ H PFL+A+ELP F++DL GYTGSIITK A++I+MLTGV
Sbjct  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV  240

Query  241  RTQEMRFATWEEIDFERGIWEIPAERMKMRRPHIVPLSTQAVELLKQLQPITGHYPYIFI  300
            RTQE+RFA WE+IDFE  +WEIPAE MKM+RPHIVPLS Q + L+KQL+PI+ H P +FI
Sbjct  241  RTQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHPLVFI  300

Query  301  GRNNRRKPISKESVNQVIELLGYKGRATGHGFRHTMSTILHEQGFDSAWIEMQLAHVDKN  360
            GRN+ RKPISKES+NQ IELLGYKGR TGHGFRHTMSTILHEQGF+SAWIEMQLAHVDKN
Sbjct  301  GRNDPRKPISKESINQAIELLGYKGRLTGHGFRHTMSTILHEQGFNSAWIEMQLAHVDKN  360

Query  361  GIRGTYNHAQYLEKRRVMLQWYADFISGLA  390
            +IR+TYNHA YL+ RR M+QWYAD+I +L+
Sbjct  361  SIRDTYNHALYLDGRREMMQWYADYIDSLS  390

41) ETAE_3428 in NC_013508


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  501 bits (1891),  Expect = 2e-143, Method: Compositional matrix adjust.
 Identities = 274/386 (71%), Positives = 336/386 (88%), Gaps = 0/386 (0%)

Query  1    MALSDIQIKRAKPQDKPYTLNDGQGLSILIKPDGSKGWRFRFRFAGKARLMSFGSYDLVS  60
            MAL+DI++K AKP+DKPY L DG G+ +LI+ +GSK WR ++RFAGK +++S+G Y  V+
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   LAEAREKREVARKQVANGIDPVEERKAQKLAQQLSTENSFEAISREWHANKADRWTVAYR  120
            LA+AREKR  ARK +A G DP E +K +K+AQQ+S  N+FEAI+REWH  KADRW++ YR
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  121  DEIIKTFEQDVFPFIGKRPIGEIKPLELLEVLRRIEKRGALEKTRKVRQRCGEVFRYAII  180
            DEII TFE+D+FP+IGKRPI+EIKP+ LLE LR++EKRGALEK RKVRQRCGEVFRYAI+
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  181  TGRAEYNPAPDLAIALAVPKQKHHPFLSAEELPHFIRDLEAYTGSIITKNATKIVMLTGV  240
            TGRA+YNPAPDLA ALA PK+ H PFL+A+ELPHF+ DL +YTGSIITK AT+I+MLTGV
Sbjct  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV  240

Query  241  RTQEMRFATWDEVDFDKRIWEIPAERMKMRRPHIVPLSTQAMELFKQLQPITGHYPYIFI  300
            RTQE+RFA W+++DF+ ++WEIPAE MKM+RPHIVPLS Q + LFKQL+PI+ H P +FI
Sbjct  241  RTQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHPLVFI  300

Query  301  GRNNRRKPISKESINQVIELLGYKGRATGHGFRHTMSTILHEQGFDSAWIEIQLAHVDKN  360
            GRN+ RKPISKESINQ IELLGYKGR TGHGFRHTMSTILHEQGF+SAWIE+QLAHVDKN
Sbjct  301  GRNDPRKPISKESINQAIELLGYKGRLTGHGFRHTMSTILHEQGFNSAWIEMQLAHVDKN  360

Query  361  SIRGTYNHAQYLEKRREMLQWYSNYL  386
            SIR+TYNHA YL+ RREM+QWY++Y+
Sbjct  361  SIRDTYNHALYLDGRREMMQWYADYI  386

42) YE105_C3845 in NC_015224


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  495 bits (1865),  Expect = 2e-141, Method: Compositional matrix adjust.
 Identities = 271/384 (71%), Positives = 335/384 (88%), Gaps = 0/384 (0%)

Query  1    MPLSDIQIRRAKPQEKAYTLSDGQGLSLLIEPNGSKGWRFRYRFAGKARLMSLGTYDLIS  60
            M+L+DI+++ AKP++K+Y L+DG G+ LLI+ NGSK WR +YRFAGK +++S+G Y  ++
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   LAEARSKRDMARKQVADGTDPAEVKKADKLAQRLSSENSFEAISREWHKAKADRWSLGYR  120
            LA+AR KR  ARK +A G DP+E KK +K+AQ++S  N+FEAI+REWH+ KADRWSL YR
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  121  EEIMSTFEADIFPYIGKRPIAEITPLELLDVLQRIEKRGALEKTRKVRQRCGEVFRYAII  180
            +EI+ TFE DIFPYIGKRPIAEI P+ LL+ L+++EKRGALEK RKVRQRCGEVFRYAI+
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  181  TGRAEYNPAPDLASALSTPKKQHYPFLSAEEMPYFIRDLEGYTGSIITKNAAKILMLTGV  240
            TGRA+YNPAPDLASAL+TPKK H+PFL+A+E+P F+ DL GYTGSIITK A++I+MLTGV
Sbjct  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV  240

Query  241  RTKEMRFATWQEIDLENGLWEIPAERMKMRRPHIVPLSTQVIALFKQLLPITGHYPYIFI  300
            RT+E+RFA W++ID+E  LWEIPAE MKM+RPHIVPLS QVI LFKQL PI+ H P +FI
Sbjct  241  RTQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHPLVFI  300

Query  301  GRNDRKKPISKETVNQVIELLGYKGRATGHGFRHTMSTILHEQGYDSAWIELQLAHVDKN  360
            GRND +KPISKE++NQ IELLGYKGR TGHGFRHTMSTILHEQG++SAWIE+QLAHVDKN
Sbjct  301  GRNDPRKPISKESINQAIELLGYKGRLTGHGFRHTMSTILHEQGFNSAWIEMQLAHVDKN  360

Query  361  SIRGTYNHAQYLEKRRDMLQWYAD  384
            SIR+TYNHA YL+ RR+M+QWYAD
Sbjct  361  SIRDTYNHALYLDGRREMMQWYAD  384

43) YPK_0061 in NC_010465


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  494 bits (1861),  Expect = 4e-141, Method: Compositional matrix adjust.
 Identities = 308/390 (79%), Positives = 359/390 (93%), Gaps = 0/390 (0%)

Query  1    MKLTVRQIDTAKPKEKPYKLSDGGGLYLEVTTNGSRYWRLKYRYAGKEKRLAFGVYPEVS  60
            M LT  ++ TAKPK+KPYKL+DGGG+YL + TNGS+YWR+KYR+AGKEK L++GVYP+V+
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   LAQarekreaakkllSAGSDPGELKKAEKIAQKLNYENTFEAIAREWHQLRADRWSLRYR  120
            LA+AREKR  A+KLL+AG+DPGE KK EKIAQ+++  NTFEAIAREWHQL+ADRWSLRYR
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  121  DEIIDTFEKDIFPYIGKRPIAEIKPLELLETLRKMEKRGALEKMRKVRQRCGEVYRYAII  180
            DEIIDTFEKDIFPYIGKRPIAEIKP+ LLE+LRKMEKRGALEKMRKVRQRCGEV+RYAI+
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  181  TGRAEYNpapdlataltppKKQHFPFLTAEELPYFLKNLAGYTGSVitktatkiilltaV  240
            TGRA+YNPAPDLA+AL+ PKK HFPFLTA+ELP FL++LAGYTGS+ITKTAT+II+LT+V
Sbjct  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV  240

Query  241  RTQELRFTRWQDIDLEKGIWEIPAEVMKMKRPHVVPLSKQVIELFNSLKPLSGHYELVFI  300
            RTQELRF+RW+DID+E  +WEIPAEVMKMKRPH+VPLS QVI LF+ L P+S H  LVFI
Sbjct  241  RTQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHPLVFI  300

Query  301  GRNDHRKPISKESVNQVIELLGYKGRLTGHGFRHTMSTILHEKGYNSAWIETQLAHIDKN  360
            GRND RKPISKES+NQ IELLGYKGRLTGHGFRHTMSTILHE+G+NSAWIE QLAH+DKN
Sbjct  301  GRNDPRKPISKESINQAIELLGYKGRLTGHGFRHTMSTILHEQGFNSAWIEMQLAHVDKN  360

Query  361  AIRGTYNHAQYMDGRREMMQWYADYLDALE  390
            +IR+TYNHA Y+DGRREMMQWYADY+D+L 
Sbjct  361  SIRDTYNHALYLDGRREMMQWYADYIDSLS  390

44) Y11_30661 in NC_017564


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  493 bits (1858),  Expect = 7e-141, Method: Compositional matrix adjust.
 Identities = 266/369 (73%), Positives = 331/369 (90%), Gaps = 0/369 (0%)

Query  2    KPKEMTDGGGLYLEVSASGAKYWRMKYRYGGKEKRIAFGVYPHVSLADARQKRETAKKLL  61
            KP  ++DGGG+YL ++++G+KYWRMKYR++GKEK +++GVYP+V+LADAR+KR  A+KLL
Sbjct  16   KPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVTLADAREKRSEARKLL  75

Query  62   ASGTDPAEVKKADKLAQRLSSENSFEAISREWHKAKADRWSLGYREEIMSTFEADIFPYI  121
            A+G DP+E KK +K+AQ++S  N+FEAI+REWH+ KADRWSL YR+EI+ TFE DIFPYI
Sbjct  76   AAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYRDEIIDTFEKDIFPYI  135

Query  122  GKRPIAEITPLELLDVLQRIEKRGALEKTHKVRQRCGEVFRYAIITGRAEYNPAPDLASA  181
            GKRPIAEI P+ LL+ L+++EKRGALEK +KVRQRCGEVFRYAI+TGRA+YNPAPDLASA
Sbjct  136  GKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIVTGRADYNPAPDLASA  195

Query  182  LSTPKKQHYPFLSAEEMPYFIRDLEGYTGSIITKNAAKILMLTGVRTKEMRFATWQEIDL  241
            L+TPKK H+PFL+A+E+P F+ DL GYTGSIITK A++I+MLTGVRT+E+RFA W++ID+
Sbjct  196  LATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGVRTQELRFARWEDIDF  255

Query  242  ESGLWEIPAERMKMRRPHIVPLSTHVIALFKQLLPITGHYPYIFIGRNDRKKPISKETVN  301
            E+ LWEIPAE MKM+RPHIVPLS +VI LFKQL PI+ H P +FIGRND +KPISKE++N
Sbjct  256  ETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHPLVFIGRNDPRKPISKESIN  315

Query  302  QVIELLGYKGRATGHGFRHTMSTILHEQGYDSAWIELQLAHVDKNSIRGTYNHAQYLEKR  361
            Q IELLGYKGR TGHGFRHTMSTILHEQG++SAWIE+QLAHVDKNSIR+TYNHA YL+ R
Sbjct  316  QAIELLGYKGRLTGHGFRHTMSTILHEQGFNSAWIEMQLAHVDKNSIRDTYNHALYLDGR  375

Query  362  RDMLQWYAD  370
            R+M+QWYAD
Sbjct  376  REMMQWYAD  384

45) A1122_05665 in NC_017168


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  489 bits (1844),  Expect = 1e-139, Method: Compositional matrix adjust.
 Identities = 273/386 (71%), Positives = 334/386 (87%), Gaps = 0/386 (0%)

Query  1    MPLSDRQIRRAKPQEKAYTLSDGQGLSLLIEPNGSKGWRFRYRFAGKARLMSLGTYDLVS  60
            M+L+D +++ AKP++K+Y L+DG G+ LLI+ NGSK WR +YRFAGK +++S+G Y  V+
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   LAEARSKRDVARKQVADGTDPAEVKKAEKLAQRLSSENSFEAISREWHKAKADRWSLGYR  120
            LA+AR KR  ARK +A G DP+E KK EK+AQ++S  N+FEAI+REWH+ KADRWSL YR
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  121  EEIMSTFEADIFPYIGKRPIAEITPLELLDVLQRIEKRGALEKTRKVRQRCGEVFRYAII  180
            +EI+ TFE DIFPYIGKRPIAEI P+ LL+ L+++EKRGALEK RKVRQRCGEVFRYAI+
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  181  TGRAEYNPAPDLASALSTPKKQHYPFLSAEEMPYFIRDLEGYTGSIITKNAAKILMLTGV  240
            TGRA+YNPAPDLASAL+TPKK H+PFL+A+E+P F+ DL GYTGSIITK A++I+MLTGV
Sbjct  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV  240

Query  241  RTKEMRFATWQEIDLEGGLWEIPAERMKMRRPHIVPLSTQVIALFKQLLPITGHYPYIFI  300
            RT+E+RFA W++ID+E  LWEIPAE MKM+RPHIVPLS QVI LFKQL PI+ H P +FI
Sbjct  241  RTQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHPLVFI  300

Query  301  GLNDRKKPISKETVNQVIELLGYKGRATGHGFRHTMSTILHEQGYDSAWIELQLAHVDKN  360
            G ND +KPISKE++NQ IELLGYKGR TGHGFRHTMSTILHEQG++SAWIE+QLAHVDKN
Sbjct  301  GRNDPRKPISKESINQAIELLGYKGRLTGHGFRHTMSTILHEQGFNSAWIEMQLAHVDKN  360

Query  361  SIRGTYNHAQYLEKRREMLQWYADLI  386
            SIR+TYNHA YL+ RREM+QWYAD I
Sbjct  361  SIRDTYNHALYLDGRREMMQWYADYI  386

46) YpAngola_A4153 in NC_010159


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  489 bits (1842),  Expect = 1e-139, Method: Compositional matrix adjust.
 Identities = 272/386 (71%), Positives = 334/386 (87%), Gaps = 0/386 (0%)

Query  1    MPLSDRQIRRAKPQEKAYTLSDGQGLSLLIEPNGSKGWRFRYRFAGKARLMSLGTYDLVS  60
            M+L+D +++ AKP++K+Y L+DG G+ LLI+ NGSK WR +YRFAGK +++S+G Y  V+
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   LAEARSKRDVARKQVADGTDPAEVKKAEKLAQRLSSEKSFEAISREWHKAKADRWSLGYR  120
            LA+AR KR  ARK +A G DP+E KK EK+AQ++S  ++FEAI+REWH+ KADRWSL YR
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  121  EEIMSTFEADIFPYIGKRPIAEITPLELLDVLQRIEKRGALEKTRKVRQRCGEVFRYAII  180
            +EI+ TFE DIFPYIGKRPIAEI P+ LL+ L+++EKRGALEK RKVRQRCGEVFRYAI+
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  181  TGRAEYNPAPDLASALSTPKKQHYPFLSAEEMPYFIRDLEGYTGSIITKNAAKILMLTGV  240
            TGRA+YNPAPDLASAL+TPKK H+PFL+A+E+P F+ DL GYTGSIITK A++I+MLTGV
Sbjct  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV  240

Query  241  RTKEMRFATWQEIDLEGGLWEIPAERMKMRRPHIVPLSTQVIALFKQLLPITGHYPYIFI  300
            RT+E+RFA W++ID+E  LWEIPAE MKM+RPHIVPLS QVI LFKQL PI+ H P +FI
Sbjct  241  RTQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHPLVFI  300

Query  301  GLNDRKKPISKETVNQVIELLGYKGRATGHGFRHTMSTILHEQGYDSAWIELQLAHVDKN  360
            G ND +KPISKE++NQ IELLGYKGR TGHGFRHTMSTILHEQG++SAWIE+QLAHVDKN
Sbjct  301  GRNDPRKPISKESINQAIELLGYKGRLTGHGFRHTMSTILHEQGFNSAWIEMQLAHVDKN  360

Query  361  SIRGTYNHAQYLEKRREMLQWYADLI  386
            SIR+TYNHA YL+ RREM+QWYAD I
Sbjct  361  SIRDTYNHALYLDGRREMMQWYADYI  386

47) YPA_4123 in NC_008150


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  489 bits (1844),  Expect = 1e-139, Method: Compositional matrix adjust.
 Identities = 273/386 (71%), Positives = 334/386 (87%), Gaps = 0/386 (0%)

Query  1    MPLSDRQIRRAKPQEKAYTLSDGQGLSLLIEPNGSKGWRFRYRFAGKARLMSLGTYDLVS  60
            M+L+D +++ AKP++K+Y L+DG G+ LLI+ NGSK WR +YRFAGK +++S+G Y  V+
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   LAEARSKRDVARKQVADGTDPAEVKKAEKLAQRLSSENSFEAISREWHKAKADRWSLGYR  120
            LA+AR KR  ARK +A G DP+E KK EK+AQ++S  N+FEAI+REWH+ KADRWSL YR
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  121  EEIMSTFEADIFPYIGKRPIAEITPLELLDVLQRIEKRGALEKTRKVRQRCGEVFRYAII  180
            +EI+ TFE DIFPYIGKRPIAEI P+ LL+ L+++EKRGALEK RKVRQRCGEVFRYAI+
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  181  TGRAEYNPAPDLASALSTPKKQHYPFLSAEEMPYFIRDLEGYTGSIITKNAAKILMLTGV  240
            TGRA+YNPAPDLASAL+TPKK H+PFL+A+E+P F+ DL GYTGSIITK A++I+MLTGV
Sbjct  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV  240

Query  241  RTKEMRFATWQEIDLEGGLWEIPAERMKMRRPHIVPLSTQVIALFKQLLPITGHYPYIFI  300
            RT+E+RFA W++ID+E  LWEIPAE MKM+RPHIVPLS QVI LFKQL PI+ H P +FI
Sbjct  241  RTQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHPLVFI  300

Query  301  GLNDRKKPISKETVNQVIELLGYKGRATGHGFRHTMSTILHEQGYDSAWIELQLAHVDKN  360
            G ND +KPISKE++NQ IELLGYKGR TGHGFRHTMSTILHEQG++SAWIE+QLAHVDKN
Sbjct  301  GRNDPRKPISKESINQAIELLGYKGRLTGHGFRHTMSTILHEQGFNSAWIEMQLAHVDKN  360

Query  361  SIRGTYNHAQYLEKRREMLQWYADLI  386
            SIR+TYNHA YL+ RREM+QWYAD I
Sbjct  361  SIRDTYNHALYLDGRREMMQWYADYI  386

48) xerC4 in NC_005810


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  489 bits (1844),  Expect = 1e-139, Method: Compositional matrix adjust.
 Identities = 273/386 (71%), Positives = 334/386 (87%), Gaps = 0/386 (0%)

Query  1    MPLSDRQIRRAKPQEKAYTLSDGQGLSLLIEPNGSKGWRFRYRFAGKARLMSLGTYDLVS  60
            M+L+D +++ AKP++K+Y L+DG G+ LLI+ NGSK WR +YRFAGK +++S+G Y  V+
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   LAEARSKRDVARKQVADGTDPAEVKKAEKLAQRLSSENSFEAISREWHKAKADRWSLGYR  120
            LA+AR KR  ARK +A G DP+E KK EK+AQ++S  N+FEAI+REWH+ KADRWSL YR
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  121  EEIMSTFEADIFPYIGKRPIAEITPLELLDVLQRIEKRGALEKTRKVRQRCGEVFRYAII  180
            +EI+ TFE DIFPYIGKRPIAEI P+ LL+ L+++EKRGALEK RKVRQRCGEVFRYAI+
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  181  TGRAEYNPAPDLASALSTPKKQHYPFLSAEEMPYFIRDLEGYTGSIITKNAAKILMLTGV  240
            TGRA+YNPAPDLASAL+TPKK H+PFL+A+E+P F+ DL GYTGSIITK A++I+MLTGV
Sbjct  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV  240

Query  241  RTKEMRFATWQEIDLEGGLWEIPAERMKMRRPHIVPLSTQVIALFKQLLPITGHYPYIFI  300
            RT+E+RFA W++ID+E  LWEIPAE MKM+RPHIVPLS QVI LFKQL PI+ H P +FI
Sbjct  241  RTQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHPLVFI  300

Query  301  GLNDRKKPISKETVNQVIELLGYKGRATGHGFRHTMSTILHEQGYDSAWIELQLAHVDKN  360
            G ND +KPISKE++NQ IELLGYKGR TGHGFRHTMSTILHEQG++SAWIE+QLAHVDKN
Sbjct  301  GRNDPRKPISKESINQAIELLGYKGRLTGHGFRHTMSTILHEQGFNSAWIEMQLAHVDKN  360

Query  361  SIRGTYNHAQYLEKRREMLQWYADLI  386
            SIR+TYNHA YL+ RREM+QWYAD I
Sbjct  361  SIRDTYNHALYLDGRREMMQWYADYI  386

49) YPO4033 in NC_003143


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  489 bits (1844),  Expect = 1e-139, Method: Compositional matrix adjust.
 Identities = 273/386 (71%), Positives = 334/386 (87%), Gaps = 0/386 (0%)

Query  1    MPLSDRQIRRAKPQEKAYTLSDGQGLSLLIEPNGSKGWRFRYRFAGKARLMSLGTYDLVS  60
            M+L+D +++ AKP++K+Y L+DG G+ LLI+ NGSK WR +YRFAGK +++S+G Y  V+
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   LAEARSKRDVARKQVADGTDPAEVKKAEKLAQRLSSENSFEAISREWHKAKADRWSLGYR  120
            LA+AR KR  ARK +A G DP+E KK EK+AQ++S  N+FEAI+REWH+ KADRWSL YR
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  121  EEIMSTFEADIFPYIGKRPIAEITPLELLDVLQRIEKRGALEKTRKVRQRCGEVFRYAII  180
            +EI+ TFE DIFPYIGKRPIAEI P+ LL+ L+++EKRGALEK RKVRQRCGEVFRYAI+
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  181  TGRAEYNPAPDLASALSTPKKQHYPFLSAEEMPYFIRDLEGYTGSIITKNAAKILMLTGV  240
            TGRA+YNPAPDLASAL+TPKK H+PFL+A+E+P F+ DL GYTGSIITK A++I+MLTGV
Sbjct  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV  240

Query  241  RTKEMRFATWQEIDLEGGLWEIPAERMKMRRPHIVPLSTQVIALFKQLLPITGHYPYIFI  300
            RT+E+RFA W++ID+E  LWEIPAE MKM+RPHIVPLS QVI LFKQL PI+ H P +FI
Sbjct  241  RTQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHPLVFI  300

Query  301  GLNDRKKPISKETVNQVIELLGYKGRATGHGFRHTMSTILHEQGYDSAWIELQLAHVDKN  360
            G ND +KPISKE++NQ IELLGYKGR TGHGFRHTMSTILHEQG++SAWIE+QLAHVDKN
Sbjct  301  GRNDPRKPISKESINQAIELLGYKGRLTGHGFRHTMSTILHEQGFNSAWIEMQLAHVDKN  360

Query  361  SIRGTYNHAQYLEKRREMLQWYADLI  386
            SIR+TYNHA YL+ RREM+QWYAD I
Sbjct  361  SIRDTYNHALYLDGRREMMQWYADYI  386

50) YPD4_3547 in NC_017154


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  489 bits (1844),  Expect = 1e-139, Method: Compositional matrix adjust.
 Identities = 273/386 (71%), Positives = 334/386 (87%), Gaps = 0/386 (0%)

Query  1    MPLSDRQIRRAKPQEKAYTLSDGQGLSLLIEPNGSKGWRFRYRFAGKARLMSLGTYDLVS  60
            M+L+D +++ AKP++K+Y L+DG G+ LLI+ NGSK WR +YRFAGK +++S+G Y  V+
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   LAEARSKRDVARKQVADGTDPAEVKKAEKLAQRLSSENSFEAISREWHKAKADRWSLGYR  120
            LA+AR KR  ARK +A G DP+E KK EK+AQ++S  N+FEAI+REWH+ KADRWSL YR
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  121  EEIMSTFEADIFPYIGKRPIAEITPLELLDVLQRIEKRGALEKTRKVRQRCGEVFRYAII  180
            +EI+ TFE DIFPYIGKRPIAEI P+ LL+ L+++EKRGALEK RKVRQRCGEVFRYAI+
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  181  TGRAEYNPAPDLASALSTPKKQHYPFLSAEEMPYFIRDLEGYTGSIITKNAAKILMLTGV  240
            TGRA+YNPAPDLASAL+TPKK H+PFL+A+E+P F+ DL GYTGSIITK A++I+MLTGV
Sbjct  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV  240

Query  241  RTKEMRFATWQEIDLEGGLWEIPAERMKMRRPHIVPLSTQVIALFKQLLPITGHYPYIFI  300
            RT+E+RFA W++ID+E  LWEIPAE MKM+RPHIVPLS QVI LFKQL PI+ H P +FI
Sbjct  241  RTQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHPLVFI  300

Query  301  GLNDRKKPISKETVNQVIELLGYKGRATGHGFRHTMSTILHEQGYDSAWIELQLAHVDKN  360
            G ND +KPISKE++NQ IELLGYKGR TGHGFRHTMSTILHEQG++SAWIE+QLAHVDKN
Sbjct  301  GRNDPRKPISKESINQAIELLGYKGRLTGHGFRHTMSTILHEQGFNSAWIEMQLAHVDKN  360

Query  361  SIRGTYNHAQYLEKRREMLQWYADLI  386
            SIR+TYNHA YL+ RREM+QWYAD I
Sbjct  361  SIRDTYNHALYLDGRREMMQWYADYI  386

51) YPD8_3553 in NC_017160


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  489 bits (1844),  Expect = 1e-139, Method: Compositional matrix adjust.
 Identities = 273/386 (71%), Positives = 334/386 (87%), Gaps = 0/386 (0%)

Query  1    MPLSDRQIRRAKPQEKAYTLSDGQGLSLLIEPNGSKGWRFRYRFAGKARLMSLGTYDLVS  60
            M+L+D +++ AKP++K+Y L+DG G+ LLI+ NGSK WR +YRFAGK +++S+G Y  V+
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   LAEARSKRDVARKQVADGTDPAEVKKAEKLAQRLSSENSFEAISREWHKAKADRWSLGYR  120
            LA+AR KR  ARK +A G DP+E KK EK+AQ++S  N+FEAI+REWH+ KADRWSL YR
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  121  EEIMSTFEADIFPYIGKRPIAEITPLELLDVLQRIEKRGALEKTRKVRQRCGEVFRYAII  180
            +EI+ TFE DIFPYIGKRPIAEI P+ LL+ L+++EKRGALEK RKVRQRCGEVFRYAI+
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  181  TGRAEYNPAPDLASALSTPKKQHYPFLSAEEMPYFIRDLEGYTGSIITKNAAKILMLTGV  240
            TGRA+YNPAPDLASAL+TPKK H+PFL+A+E+P F+ DL GYTGSIITK A++I+MLTGV
Sbjct  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV  240

Query  241  RTKEMRFATWQEIDLEGGLWEIPAERMKMRRPHIVPLSTQVIALFKQLLPITGHYPYIFI  300
            RT+E+RFA W++ID+E  LWEIPAE MKM+RPHIVPLS QVI LFKQL PI+ H P +FI
Sbjct  241  RTQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHPLVFI  300

Query  301  GLNDRKKPISKETVNQVIELLGYKGRATGHGFRHTMSTILHEQGYDSAWIELQLAHVDKN  360
            G ND +KPISKE++NQ IELLGYKGR TGHGFRHTMSTILHEQG++SAWIE+QLAHVDKN
Sbjct  301  GRNDPRKPISKESINQAIELLGYKGRLTGHGFRHTMSTILHEQGFNSAWIEMQLAHVDKN  360

Query  361  SIRGTYNHAQYLEKRREMLQWYADLI  386
            SIR+TYNHA YL+ RREM+QWYAD I
Sbjct  361  SIRDTYNHALYLDGRREMMQWYADYI  386

52) y4052 in NC_004088


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  489 bits (1844),  Expect = 1e-139, Method: Compositional matrix adjust.
 Identities = 273/386 (71%), Positives = 334/386 (87%), Gaps = 0/386 (0%)

Query  1    MPLSDRQIRRAKPQEKAYTLSDGQGLSLLIEPNGSKGWRFRYRFAGKARLMSLGTYDLVS  60
            M+L+D +++ AKP++K+Y L+DG G+ LLI+ NGSK WR +YRFAGK +++S+G Y  V+
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   LAEARSKRDVARKQVADGTDPAEVKKAEKLAQRLSSENSFEAISREWHKAKADRWSLGYR  120
            LA+AR KR  ARK +A G DP+E KK EK+AQ++S  N+FEAI+REWH+ KADRWSL YR
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  121  EEIMSTFEADIFPYIGKRPIAEITPLELLDVLQRIEKRGALEKTRKVRQRCGEVFRYAII  180
            +EI+ TFE DIFPYIGKRPIAEI P+ LL+ L+++EKRGALEK RKVRQRCGEVFRYAI+
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  181  TGRAEYNPAPDLASALSTPKKQHYPFLSAEEMPYFIRDLEGYTGSIITKNAAKILMLTGV  240
            TGRA+YNPAPDLASAL+TPKK H+PFL+A+E+P F+ DL GYTGSIITK A++I+MLTGV
Sbjct  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV  240

Query  241  RTKEMRFATWQEIDLEGGLWEIPAERMKMRRPHIVPLSTQVIALFKQLLPITGHYPYIFI  300
            RT+E+RFA W++ID+E  LWEIPAE MKM+RPHIVPLS QVI LFKQL PI+ H P +FI
Sbjct  241  RTQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHPLVFI  300

Query  301  GLNDRKKPISKETVNQVIELLGYKGRATGHGFRHTMSTILHEQGYDSAWIELQLAHVDKN  360
            G ND +KPISKE++NQ IELLGYKGR TGHGFRHTMSTILHEQG++SAWIE+QLAHVDKN
Sbjct  301  GRNDPRKPISKESINQAIELLGYKGRLTGHGFRHTMSTILHEQGFNSAWIEMQLAHVDKN  360

Query  361  SIRGTYNHAQYLEKRREMLQWYADLI  386
            SIR+TYNHA YL+ RREM+QWYAD I
Sbjct  361  SIRDTYNHALYLDGRREMMQWYADYI  386

53) YPN_3680 in NC_008149


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  489 bits (1844),  Expect = 1e-139, Method: Compositional matrix adjust.
 Identities = 273/386 (71%), Positives = 334/386 (87%), Gaps = 0/386 (0%)

Query  1    MPLSDRQIRRAKPQEKAYTLSDGQGLSLLIEPNGSKGWRFRYRFAGKARLMSLGTYDLVS  60
            M+L+D +++ AKP++K+Y L+DG G+ LLI+ NGSK WR +YRFAGK +++S+G Y  V+
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   LAEARSKRDVARKQVADGTDPAEVKKAEKLAQRLSSENSFEAISREWHKAKADRWSLGYR  120
            LA+AR KR  ARK +A G DP+E KK EK+AQ++S  N+FEAI+REWH+ KADRWSL YR
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  121  EEIMSTFEADIFPYIGKRPIAEITPLELLDVLQRIEKRGALEKTRKVRQRCGEVFRYAII  180
            +EI+ TFE DIFPYIGKRPIAEI P+ LL+ L+++EKRGALEK RKVRQRCGEVFRYAI+
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  181  TGRAEYNPAPDLASALSTPKKQHYPFLSAEEMPYFIRDLEGYTGSIITKNAAKILMLTGV  240
            TGRA+YNPAPDLASAL+TPKK H+PFL+A+E+P F+ DL GYTGSIITK A++I+MLTGV
Sbjct  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV  240

Query  241  RTKEMRFATWQEIDLEGGLWEIPAERMKMRRPHIVPLSTQVIALFKQLLPITGHYPYIFI  300
            RT+E+RFA W++ID+E  LWEIPAE MKM+RPHIVPLS QVI LFKQL PI+ H P +FI
Sbjct  241  RTQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHPLVFI  300

Query  301  GLNDRKKPISKETVNQVIELLGYKGRATGHGFRHTMSTILHEQGYDSAWIELQLAHVDKN  360
            G ND +KPISKE++NQ IELLGYKGR TGHGFRHTMSTILHEQG++SAWIE+QLAHVDKN
Sbjct  301  GRNDPRKPISKESINQAIELLGYKGRLTGHGFRHTMSTILHEQGFNSAWIEMQLAHVDKN  360

Query  361  SIRGTYNHAQYLEKRREMLQWYADLI  386
            SIR+TYNHA YL+ RREM+QWYAD I
Sbjct  361  SIRDTYNHALYLDGRREMMQWYADYI  386

54) YPDSF_3775 in NC_009381


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  489 bits (1844),  Expect = 1e-139, Method: Compositional matrix adjust.
 Identities = 273/386 (71%), Positives = 334/386 (87%), Gaps = 0/386 (0%)

Query  1    MPLSDRQIRRAKPQEKAYTLSDGQGLSLLIEPNGSKGWRFRYRFAGKARLMSLGTYDLVS  60
            M+L+D +++ AKP++K+Y L+DG G+ LLI+ NGSK WR +YRFAGK +++S+G Y  V+
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   LAEARSKRDVARKQVADGTDPAEVKKAEKLAQRLSSENSFEAISREWHKAKADRWSLGYR  120
            LA+AR KR  ARK +A G DP+E KK EK+AQ++S  N+FEAI+REWH+ KADRWSL YR
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  121  EEIMSTFEADIFPYIGKRPIAEITPLELLDVLQRIEKRGALEKTRKVRQRCGEVFRYAII  180
            +EI+ TFE DIFPYIGKRPIAEI P+ LL+ L+++EKRGALEK RKVRQRCGEVFRYAI+
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  181  TGRAEYNPAPDLASALSTPKKQHYPFLSAEEMPYFIRDLEGYTGSIITKNAAKILMLTGV  240
            TGRA+YNPAPDLASAL+TPKK H+PFL+A+E+P F+ DL GYTGSIITK A++I+MLTGV
Sbjct  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV  240

Query  241  RTKEMRFATWQEIDLEGGLWEIPAERMKMRRPHIVPLSTQVIALFKQLLPITGHYPYIFI  300
            RT+E+RFA W++ID+E  LWEIPAE MKM+RPHIVPLS QVI LFKQL PI+ H P +FI
Sbjct  241  RTQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHPLVFI  300

Query  301  GLNDRKKPISKETVNQVIELLGYKGRATGHGFRHTMSTILHEQGYDSAWIELQLAHVDKN  360
            G ND +KPISKE++NQ IELLGYKGR TGHGFRHTMSTILHEQG++SAWIE+QLAHVDKN
Sbjct  301  GRNDPRKPISKESINQAIELLGYKGRLTGHGFRHTMSTILHEQGFNSAWIEMQLAHVDKN  360

Query  361  SIRGTYNHAQYLEKRREMLQWYADLI  386
            SIR+TYNHA YL+ RREM+QWYAD I
Sbjct  361  SIRDTYNHALYLDGRREMMQWYADYI  386

55) ECO26_4941 in NC_013361


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  489 bits (1844),  Expect = 9e-140, Method: Compositional matrix adjust.
 Identities = 274/384 (72%), Positives = 331/384 (87%), Gaps = 0/384 (0%)

Query  1    MALTDIQIKRAKPQDKPYTLNDGQGLSLLINPDGSKGWRFRFRFAGKARLMSFGSYDLVS  60
            MALTDI++K AKP+DKPY L DG G+ LLIN +GSK WR ++RFAGK +++S+G Y  V+
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   LAEAREKRDIARKQVANGIDPVEERKAQKLAQKLSTKNSFESVSREWHAAKADRWTLAYR  120
            LA+AREKR  ARK +A G DP E +K +K+AQ++S KN+FE+++REWH  KADRW+L YR
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  121  EEIIKTFEQDVFPFIGKRPIAEIKPLELLEVLKRIEKRGALEKTRKVRQRCGEVFRYAII  180
            +EII TFE+D+FP+IGKRPIAEIKP+ LLE L+++EKRGALEK RKVRQRCGEVFRYAI+
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  181  TGRAEYNPAPDLAIALAVPKQKHHPFLSAEELPHFVRDLEAYTGSIITKNATKIVMLTGV  240
            TGRA+YNPAPDLA ALA PK+ H PFL+A+ELPHF+ DL +YTGSIITK AT+I+MLTGV
Sbjct  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV  240

Query  241  RTQEMRFATWQELDLEKGLWEIPAERMKMRRPHIVPLSRQVIRLFQQLKPITGHYPYIFI  300
            RTQE+RFA W+++D+E  LWEIPAE MKM+RPHIVPLS QVI LF+QL PI+ H P +FI
Sbjct  241  RTQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHPLVFI  300

Query  301  GRNNRKKPISKESINQVIELLGFKGRITGHGFRHTMSTILHEAGFNSAWIEMQLAHVDKN  360
            GRN+ +KPISKESINQ IELLG+KGR+TGHGFRHTMSTILHE GFNSAWIEMQLAHVDKN
Sbjct  301  GRNDPRKPISKESINQAIELLGYKGRLTGHGFRHTMSTILHEQGFNSAWIEMQLAHVDKN  360

Query  361  SIRGVYNHAQYLNGRSRMLQFYAD  384
            SIR+ YNHA YL+GR  M+Q YAD
Sbjct  361  SIRDTYNHALYLDGRREMMQWYAD  384

56) SEEH1578_04845 in NC_021810


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  489 bits (1844),  Expect = 9e-140, Method: Compositional matrix adjust.
 Identities = 274/384 (72%), Positives = 331/384 (87%), Gaps = 0/384 (0%)

Query  1    MALTDIQIKRAKPQDKPYTLNDGQGLSLLINPDGSKGWRFRFRFAGKARLMSFGSYDLVS  60
            MALTDI++K AKP+DKPY L DG G+ LLIN +GSK WR ++RFAGK +++S+G Y  V+
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   LAEAREKRDIARKQVANGIDPVEERKAQKLAQKLSTKNSFESVSREWHAAKADRWTLAYR  120
            LA+AREKR  ARK +A G DP E +K +K+AQ++S KN+FE+++REWH  KADRW+L YR
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  121  EEIIKTFEQDVFPFIGKRPIAEIKPLELLEVLKRIEKRGALEKTRKVRQRCGEVFRYAII  180
            +EII TFE+D+FP+IGKRPIAEIKP+ LLE L+++EKRGALEK RKVRQRCGEVFRYAI+
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  181  TGRAEYNPAPDLAIALAVPKQKHHPFLSAEELPHFVRDLEAYTGSIITKNATKIVMLTGV  240
            TGRA+YNPAPDLA ALA PK+ H PFL+A+ELPHF+ DL +YTGSIITK AT+I+MLTGV
Sbjct  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV  240

Query  241  RTQEMRFATWQELDLEKGLWEIPAERMKMRRPHIVPLSRQVIRLFQQLKPITGHYPYIFI  300
            RTQE+RFA W+++D+E  LWEIPAE MKM+RPHIVPLS QVI LF+QL PI+ H P +FI
Sbjct  241  RTQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHPLVFI  300

Query  301  GRNNRKKPISKESINQVIELLGFKGRITGHGFRHTMSTILHEAGFNSAWIEMQLAHVDKN  360
            GRN+ +KPISKESINQ IELLG+KGR+TGHGFRHTMSTILHE GFNSAWIEMQLAHVDKN
Sbjct  301  GRNDPRKPISKESINQAIELLGYKGRLTGHGFRHTMSTILHEQGFNSAWIEMQLAHVDKN  360

Query  361  SIRGVYNHAQYLNGRSRMLQFYAD  384
            SIR+ YNHA YL+GR  M+Q YAD
Sbjct  361  SIRDTYNHALYLDGRREMMQWYAD  384

57) EC042_3992 in NC_017626


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  488 bits (1841),  Expect = 2e-139, Method: Compositional matrix adjust.
 Identities = 272/386 (71%), Positives = 330/386 (86%), Gaps = 0/386 (0%)

Query  1    MALTDIQIKRAKPQDKPYTLNDGQGLSLLINPDGSKGWRFRFRFAGKARLMSFGSYDLVS  60
            MALTDI++K AKP+DKPY L DG G+ LLIN +GSK WR ++RFAGK +++S+G Y  V+
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   LAEAREKRDIARKQVANGIDPVEERKALRLAQKLSTENSFEAICREWHTNKADRWTVAYR  120
            LA+AREKR  ARK +A G DP E +K  ++AQ++S  N+FEAI REWH  KADRW++ YR
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  121  EEIIKTFEQDVFPFIGKRPISEIKPLELLEVLRRIEKRGALEKTRKVRQRCGEVYRYAII  180
            +EII TFE+D+FP+IGKRPI+EIKP+ LLE LR++EKRGALEK RKVRQRCGEV+RYAI+
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  181  TGRAEYNPAPDLAIALAVPKQKHHPFLSAEELPHFIRDLEAYTGSIITKNATKIVMLTGV  240
            TGRA+YNPAPDLA ALA PK+ H PFL+A+ELPHF+ DL +YTGSIITK AT+I+MLTGV
Sbjct  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV  240

Query  241  RTQEMRFATWEEVDLEKGIWEIPAERMKMRRPHIVPLSTQVVDLFKQLKPITGHYPYIFI  300
            RTQE+RFA WE++D+E  +WEIPAE MKM+RPHIVPLS QV+ LFKQL PI+ H P +FI
Sbjct  241  RTQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHPLVFI  300

Query  301  GRNNRNKPISKESVSQVIESLGYKGRATGHGFRHTMSTILHEQGFDSAWIEMQLAHVDKN  360
            GRN+  KPISKES++Q IE LGYKGR TGHGFRHTMSTILHEQGF+SAWIEMQLAHVDKN
Sbjct  301  GRNDPRKPISKESINQAIELLGYKGRLTGHGFRHTMSTILHEQGFNSAWIEMQLAHVDKN  360

Query  361  SIRGTYNHAQYLEGRKKMMNWYANHI  386
            SIR+TYNHA YL+GR+ MM+WYA+ I
Sbjct  361  SIRDTYNHALYLDGRREMMQWYADYI  386

58) YPC_4545 in NC_017265


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  487 bits (1837),  Expect = 4e-139, Method: Compositional matrix adjust.
 Identities = 272/386 (71%), Positives = 333/386 (87%), Gaps = 0/386 (0%)

Query  1    MPLSDRQIRRAKPQEKAYTLSDGQGLSLLIEPNGSKGWRFRYRFAGKARLMSLGTYDLVS  60
            M+L+D +++ AKP++K+Y L+DG G+ LLI+ NGSK WR +YRFAGK +++S+G Y  V+
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   LAEARSKRDVARKQVADGTDPAEVKKAEKLAQRLSSENSFEAISREWHKAKADRWSLGYR  120
            LA+AR KR  ARK +A G DP+E KK EK+AQ++S  N+FEAI+REWH+ KADRWSL YR
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  121  EEIMSTFEADIFPYIGKRPIAEITQLELLDVLQRIEKRGALEKTRKVRQRCGEVFRYAII  180
            +EI+ TFE DIFPYIGKRPIAEI  + LL+ L+++EKRGALEK RKVRQRCGEVFRYAI+
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  181  TGRAEYNPAPDLASALSTPKKQHYPFLSAEEMPYFIRDLEGYTGSIITKNAAKILMLTGV  240
            TGRA+YNPAPDLASAL+TPKK H+PFL+A+E+P F+ DL GYTGSIITK A++I+MLTGV
Sbjct  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV  240

Query  241  RTKEMRFATWQEIDLEGGLWEIPAERMKMRRPHIVPLSTQVIALFKQLLPITGHYPYIFI  300
            RT+E+RFA W++ID+E  LWEIPAE MKM+RPHIVPLS QVI LFKQL PI+ H P +FI
Sbjct  241  RTQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHPLVFI  300

Query  301  GLNDRKKPISKETVNQVIELLGYKGRATGHGFRHTMSTILHEQGYDSAWIELQLAHVDKN  360
            G ND +KPISKE++NQ IELLGYKGR TGHGFRHTMSTILHEQG++SAWIE+QLAHVDKN
Sbjct  301  GRNDPRKPISKESINQAIELLGYKGRLTGHGFRHTMSTILHEQGFNSAWIEMQLAHVDKN  360

Query  361  SIRGTYNHAQYLEKRREMLQWYADLI  386
            SIR+TYNHA YL+ RREM+QWYAD I
Sbjct  361  SIRDTYNHALYLDGRREMMQWYADYI  386

59) A3UG_00595 in NC_018079


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  486 bits (1831),  Expect = 9e-139, Method: Compositional matrix adjust.
 Identities = 262/386 (68%), Positives = 331/386 (86%), Gaps = 0/386 (0%)

Query  1    MALTDIQIKRAKPQDKPYTLNDGQGLSLLINPDGSKGWRFRFRFAGKARLMSFGSYGLVS  60
            MALTDI++K AKP+DKPY L DG G+ LLIN +GSK WR ++RFAGK +++S+G Y  V+
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   LAEAREKRETARKQVANCIDPVQERKAQKLAQQLSTENSFESICREWHANKANRWTVAYR  120
            LA+AREKR  ARK +A   DP + +K +K+AQQ+S  N+FE+I REWH  KA+RW++ YR
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  121  EEIIKTFEQDVFPFIGKRPISEIKPLELLEVLRRIENRGALEKTRKVRQRCGEVYRYAVI  180
            +EII TFE+D+FP+IGKRPI+EIKP+ LLE LR++E+RGALEK RKVRQRCGEV+RYA++
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  181  TGRAEYNPAPDLAIALAVPKQKHHPFLSAEELPHFIQDLEAYTGSIITKNATKIVMLTGV  240
            TGRA+YNPAPDLA ALA PK+ H PFL+A+ELPHF++DL +YTGSIITK AT+I+MLTGV
Sbjct  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV  240

Query  241  RTQEMRFATWEEVDLEKGIWEIPAERMKMRRPHIVPLSTQVIDLFKQLKPITQNYPYIFI  300
            RTQE+RFA WE++D+E  +WEIPAE MKM+RPHIVPLS QVI LFKQL PI+++ P +FI
Sbjct  241  RTQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHPLVFI  300

Query  301  GRNNRSKPISKESVSHVIELLGYKGRATGHGFRHTMSTILHEKGFDTQWIELQLAHIDKN  360
            GRN+  KPISKES+++ IELLGYKGR TGHGFRHTMSTILHE+GF++ WIE+QLAH+DKN
Sbjct  301  GRNDPRKPISKESINQAIELLGYKGRLTGHGFRHTMSTILHEQGFNSAWIEMQLAHVDKN  360

Query  361  SIRGIYNHALHIENRRIMLQWYADYL  386
            SIR+ YNHAL ++ RR M+QWYADY+
Sbjct  361  SIRDTYNHALYLDGRREMMQWYADYI  386

60) EcSMS35_4002 in NC_010498


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  484 bits (1825),  Expect = 3e-138, Method: Compositional matrix adjust.
 Identities = 269/384 (71%), Positives = 328/384 (86%), Gaps = 0/384 (0%)

Query  1    MALTDIQIKRAKPQDKPYTLNDGQGLSLLINPDGSKGWRFRFRFAGKARLMSFGSYDLVS  60
            MALTDI++K AKP+DKPY L DG G+ LLIN +GSK WR ++RFAGK +++S+G Y  V+
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   LAEAREKRDIARKQVANGIDPVEERKALRLAQKLSTENSFEAICREWHTNKADRWTVAYR  120
            LA+AREKR  ARK +A G DP E +K  ++AQ++S  N+FEAI REWH  KADRW++ YR
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  121  EEIIKTFEQDVFPFIGKRPISEIKPLELLEVLRRIEKRGALEKTRKVRQRCGEVYRYAII  180
            +EII TFE+D+FP+IGKRPI+EIKP+ LLE LR++EKRGALEK RKVRQRCGEV+RYAI+
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  181  TGRAEYNPAPDLAIALAVPKQKHHPFLSAEELPHFIRDLEAYTGSIITKNATKIVMLTGV  240
            TGRA+YNPAPDLA ALA PK+ H PFL+A+ELPHF+ DL +YTGSIITK AT+I+MLTGV
Sbjct  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV  240

Query  241  RTQEMRFATWEEVDLEKGIWEIPAERMKMRRPHIVPLSTQVVDLFKQLKPITGHYPYIFI  300
            RTQE+RFA WE++D+E  +WEIPAE MKM+RPHIVPLS QV+ LFKQL PI+ H P +FI
Sbjct  241  RTQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHPLVFI  300

Query  301  GRNNRSKPISKESVSQVIELIGYKGRATGHGFRHTMSTILHEQGFDSAWIEIQLAHVDKN  360
            GRN+  KPISKES++Q IEL+GYKGR TGHGFRHTMSTILHEQGF+SAWIE+QLAHVDKN
Sbjct  301  GRNDPRKPISKESINQAIELLGYKGRLTGHGFRHTMSTILHEQGFNSAWIEMQLAHVDKN  360

Query  361  RIRGTYNHAQYLEHRKKMMQWYSD  384
             IR+TYNHA YL+ R+ MMQWY+D
Sbjct  361  SIRDTYNHALYLDGRREMMQWYAD  384

61) EbC_44590 in NC_014306


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  484 bits (1824),  Expect = 4e-138, Method: Compositional matrix adjust.
 Identities = 265/384 (70%), Positives = 330/384 (86%), Gaps = 0/384 (0%)

Query  1    MPLTDIQIRRAKPLDKPYTMNDGQGLALLINPDGSKGWRFRYRYAGKARLMSFGSYSLVS  60
            M+LTDI+++ AKP DKPY + DG G+ LLIN +GSK WR +YR+AGK +++S+G Y+ V+
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   LAEAREKRDTARKQVANGIDPVEERKAQKLAQQLSSENSFEAISKEWHANKADRWTLAYR  120
            LA+AREKR  ARK +A G DP E +K +K+AQQ+S  N+FEAI++EWH  KADRW+L YR
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  121  EEILKTFEQDVYPFIGRRPISEIKPLELLEVLRRIEKRGALEKTRKVRQRCGEVFRYAII  180
            +EI+ TFE+D++P+IG+RPI+EIKP+ LLE LR++EKRGALEK RKVRQRCGEVFRYAI+
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  181  TGRAEYNPAPDLASALAVPKQKHHPFLSAEELPHFISDLEAYTGSIITKNATKIVMLTGV  240
            TGRA+YNPAPDLASALA PK+ H PFL+A+ELPHF++DL +YTGSIITK AT+I+MLTGV
Sbjct  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV  240

Query  241  RTQEMRFASWCEVDLVKGVWEIPAERMKMRRPHIVPLSTQVIDLFKQLKLITGHYPYIFI  300
            RTQE+RFA W ++D+   +WEIPAE MKM+RPHIVPLS QVI LFKQL  I+ H P +FI
Sbjct  241  RTQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHPLVFI  300

Query  301  GRNNRSKPISKETVSQVIELLGYKGRATGHGFRHTMSTILHEQGFDSAWIEMQLAHVDKN  360
            GRN+  KPISKE+++Q IELLGYKGR TGHGFRHTMSTILHEQGF+SAWIEMQLAHVDKN
Sbjct  301  GRNDPRKPISKESINQAIELLGYKGRLTGHGFRHTMSTILHEQGFNSAWIEMQLAHVDKN  360

Query  361  NIRGTYNHALYIKQRKSMLQWYSD  384
            +IR+TYNHALY+  R+ M+QWY+D
Sbjct  361  SIRDTYNHALYLDGRREMMQWYAD  384

62) Spro_0108 in NC_009832


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  480 bits (1809),  Expect = 5e-137, Method: Compositional matrix adjust.
 Identities = 275/386 (72%), Positives = 334/386 (87%), Gaps = 0/386 (0%)

Query  1    MLLTDIQIRRSKPQEKPYTLNDGQGLSLLINTDGSKGWRFRYRYAGKAKLMSFGTYPLVT  60
            M LTDI+++ +KP++KPY L DG G+ LLINT+GSK WR +YR+AGK K++S+G YP VT
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   LAEAREKRGEARKQVANGIDPVADkkaqklaqklSFENSFEAISREWHTNKADRWTLAYR  120
            LA+AREKR+EARK +A G DP   KK +K+AQ++S+ N+FEAI+REWH  KADRW+L YR
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  121  EEIMRTFEQDVFPHIGQRPIAEIKPLELLEVLRRIEKRGALEKTRKIRQRCGEVFRYAII  180
            +EI+ TFE+D+FP IG+RPIAEIKP+ LLE LR++EKRGALEK RK+RQRCGEVFRYAI+
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  181  TGRAEYNPAPDLASALAVPKQKHHPFLSAEELPYFVKDLEGYTGSIITKNAAKIVMLTGV  240
            TGRA+YNPAPDLASALA PK+ H PFL+A+ELP F++DL GYTGSIITK A++I+MLTGV
Sbjct  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV  240

Query  241  RTQEMRFATWEEIDFERAIWEIPAARMKMRRLHIVPLSTQVVELFKQLQPITGHYPYIFI  300
            RTQE+RFA WE+IDFE  +WEIPA  MKM+R HIVPLS QV+ LFKQL+PI+ H P +FI
Sbjct  241  RTQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHPLVFI  300

Query  301  GRNNRRKPISKESVNQVIELLGYKGRATGHGFRHTMSTILHEQGFDSAWIEMQLAHVDKN  360
            GRN+ RKPISKES+NQ IELLGYKGR TGHGFRHTMSTILHEQGF+SAWIEMQLAHVDKN
Sbjct  301  GRNDPRKPISKESINQAIELLGYKGRLTGHGFRHTMSTILHEQGFNSAWIEMQLAHVDKN  360

Query  361  GIRGTYNHAQYFAQRQSMMQWYSDNI  386
            +IR+TYNHA Y+  R+ MMQWY+D I
Sbjct  361  SIRDTYNHALYLDGRREMMQWYADYI  386

63) ENC_02820 in NC_021046


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  480 bits (1809),  Expect = 5e-137, Method: Compositional matrix adjust.
 Identities = 260/384 (68%), Positives = 326/384 (85%), Gaps = 0/384 (0%)

Query  1    MALTDIQIKRAKPQDKPYTLNDGQGLSMLINPDGSKGWRFRFRLAGKARLMSFGSYDLVS  60
            MALTDI++K AKP+DKPY L DG G+ +LIN +GSK WR ++R+AGK +++S+G Y  V+
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   LAEAREKRDTARKQVANGIDPVEERKALKLAQKLSTENSFESVSREWHSTKADRWTVAYR  120
            LA+AREKR  ARK +A G DP E +K  K+AQ++S  N+FE+++REWH  KADRW++ YR
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  121  EEIIKTFEQDVFPFIGKRPIGEIKPLELLEVLRRIEKRGALEKTRKVRQRCGEVFRYAII  180
            +EII TFE+D+FP+IGKRPI+EIKP+ LLE LR++EKRGALEK RKVRQRCGEVFRYAI+
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  181  TGRAEYNPAPDLAIALAVHKQKHHPFLSSEELPHFIRDLEAYTGSIITKNATKIIMLTGV  240
            TGRA+YNPAPDLA ALA  K+ H PFL+++ELPHF+ DL +YTGSIITK AT+IIMLTGV
Sbjct  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV  240

Query  241  RTQEMRFATWDEVDLDKGVWQIPAERMKMRRPHLVPLSTQVIDLFKQLKPITGHYPYIFI  300
            RTQE+RFA W+++D++  +W+IPAE MKM+RPH+VPLS QVI LFKQL PI+ H P +FI
Sbjct  241  RTQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHPLVFI  300

Query  301  GRNNRSKPISKETVSQVIELLGYKGRATGHGFRHTMSTILHEQGFESAWIEMQLAHADKN  360
            GRN+  KPISKE+++Q IELLGYKGR TGHGFRHTMSTILHEQGF+SAWIEMQLAH DKN
Sbjct  301  GRNDPRKPISKESINQAIELLGYKGRLTGHGFRHTMSTILHEQGFNSAWIEMQLAHVDKN  360

Query  361  KIRGIYNHAQYLEERKKMLQWYSN  384
             IR+ YNHA YL+ R+ M+QWY++
Sbjct  361  SIRDTYNHALYLDGRREMMQWYAD  384

64) A79E_0092 in NC_018522


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  478 bits (1803),  Expect = 2e-136, Method: Compositional matrix adjust.
 Identities = 266/384 (70%), Positives = 326/384 (85%), Gaps = 0/384 (0%)

Query  1    MALTDIQIKRAKPQEKPYTLNDGQGLSLLINPDGSKGWRFRFRLAGKARLMSFGSYDLVS  60
            MALTDI++K AKP++KPY L DG G+ LLIN +GSK WR ++R+AGK +++S+G Y  V+
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   LAEAREKRETSRKQVANGIDPVEERKSQKLAQKLSTENSFEAICREWHTNKADRWTVAYR  120
            LA+AREKR  +RK +A G DP E +K +K+AQ++S  N+FEAI REWH  KADRW++ YR
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  121  EEIIKTFEKDVFPFIGKRPNSEIKPLELLEVLRRIEKRGALEKTRKVRQRCGEVYRYAII  180
            +EII TFEKD+FP+IGKRP +EIKP+ LLE LR++EKRGALEK RKVRQRCGEV+RYAI+
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  181  TGRAEYNPAPDLAIALAVPKQKHHPFLSAEELPHFIRDLEAYTGSIITKNATKIIMLTGV  240
            TGRA+YNPAPDLA ALA PK+ H PFL+A+ELPHF+ DL +YTGSIITK AT+IIMLTGV
Sbjct  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV  240

Query  241  RTQEMRFATGDEIDLEKAIWEIPAERMKMRRPHIVPLSTQVIDLFRQLKPITGHYPYIFI  300
            RTQE+RFA  ++ID+E  +WEIPAE MKM+RPHIVPLS QVI LF+QL PI+ H P +FI
Sbjct  241  RTQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHPLVFI  300

Query  301  GRKNRSKPISKESVSQVIELLGYKGRATGHGFRHTMSTILHEQGFDSAWIEMQLAHVDKN  360
            GR++  KPISKES++Q IELLGYKGR TGHGFRHTMSTILHEQGF+SAWIEMQLAHVDKN
Sbjct  301  GRNDPRKPISKESINQAIELLGYKGRLTGHGFRHTMSTILHEQGFNSAWIEMQLAHVDKN  360

Query  361  KIRGIYNHAQYIEDRTKMMQWYSD  384
             IR+ YNHA Y+++R  MMQWY+D
Sbjct  361  SIRDTYNHALYLDGRREMMQWYAD  384

65) KP1_5380 in NC_012731


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  478 bits (1803),  Expect = 2e-136, Method: Compositional matrix adjust.
 Identities = 266/384 (70%), Positives = 326/384 (85%), Gaps = 0/384 (0%)

Query  1    MALTDIQIKRAKPQEKPYTLNDGQGLSLLINPDGSKGWRFRFRLAGKARLMSFGSYDLVS  60
            MALTDI++K AKP++KPY L DG G+ LLIN +GSK WR ++R+AGK +++S+G Y  V+
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   LAEAREKRETSRKQVANGIDPVEERKSQKLAQKLSTENSFEAICREWHTNKADRWTVAYR  120
            LA+AREKR  +RK +A G DP E +K +K+AQ++S  N+FEAI REWH  KADRW++ YR
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  121  EEIIKTFEKDVFPFIGKRPNSEIKPLELLEVLRRIEKRGALEKTRKVRQRCGEVYRYAII  180
            +EII TFEKD+FP+IGKRP +EIKP+ LLE LR++EKRGALEK RKVRQRCGEV+RYAI+
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  181  TGRAEYNPAPDLAIALAVPKQKHHPFLSAEELPHFIRDLEAYTGSIITKNATKIIMLTGV  240
            TGRA+YNPAPDLA ALA PK+ H PFL+A+ELPHF+ DL +YTGSIITK AT+IIMLTGV
Sbjct  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV  240

Query  241  RTQEMRFATGDEIDLEKAIWEIPAERMKMRRPHIVPLSTQVIDLFRQLKPITGHYPYIFI  300
            RTQE+RFA  ++ID+E  +WEIPAE MKM+RPHIVPLS QVI LF+QL PI+ H P +FI
Sbjct  241  RTQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHPLVFI  300

Query  301  GRKNRSKPISKESVSQVIELLGYKGRATGHGFRHTMSTILHEQGFDSAWIEMQLAHVDKN  360
            GR++  KPISKES++Q IELLGYKGR TGHGFRHTMSTILHEQGF+SAWIEMQLAHVDKN
Sbjct  301  GRNDPRKPISKESINQAIELLGYKGRLTGHGFRHTMSTILHEQGFNSAWIEMQLAHVDKN  360

Query  361  KIRGIYNHAQYIEDRTKMMQWYSD  384
             IR+ YNHA Y+++R  MMQWY+D
Sbjct  361  SIRDTYNHALYLDGRREMMQWYAD  384

66) EcolC_0053 in NC_010468


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  478 bits (1801),  Expect = 2e-136, Method: Compositional matrix adjust.
 Identities = 264/384 (69%), Positives = 328/384 (86%), Gaps = 0/384 (0%)

Query  1    MALTDTQIKRAKPQDKPYTLNDGQGLSLLINPDGTKGWRFRFRFAGKARLMSFGSYDLVS  60
            MALTD ++K AKP+DKPY L DG G+ LLIN +G+K WR ++RFAGK +++S+G Y  V+
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   LAEAREKRDIARKQVANGIDPVEERKALRLAQKLSTENSFEAICREWHTNKADRWTVAYR  120
            LA+AREKR  ARK +A G DP E +K  ++AQ++S  N+FEAI REWH  KADRW++ YR
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  121  EEIMKTFEQDVFPFIGKRPISEIKPLELLEVLRRIEKRGALEKTRKVRQRCGEVYRYAII  180
            +EI+ TFE+D+FP+IGKRPI+EIKP+ LLE LR++EKRGALEK RKVRQRCGEV+RYAI+
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  181  TGRAEYNPAPDLAIALAVPKQKHHPFLSAEELPHFIQDLEAYTGSIITKNATKIVMLTGV  240
            TGRA+YNPAPDLA ALA PK+ H PFL+A+ELPHF++DL +YTGSIITK AT+I+MLTGV
Sbjct  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV  240

Query  241  RTQEMRLATWNEVDLEKGIWEIPAERMKMRRPHIVPLSTQVIALFEQLKPITGHYPYIFI  300
            RTQE+R+A W+++D+E  +WEIPAE MKM+RPHIVPLS QVI LF QL PI+ H P +FI
Sbjct  241  RTQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHPLVFI  300

Query  301  GRNNRSKPISKESVSQVIELLGYKGRATGHGFRHSLSTILHEHGFDSAWIEMQLAHVDKN  360
            GRN+  KPISKES++Q IELLGYKGR TGHGFRH++STILHE+GF+SAWIEMQLAHVDKN
Sbjct  301  GRNDPRKPISKESINQAIELLGYKGRLTGHGFRHTMSTILHEQGFNSAWIEMQLAHVDKN  360

Query  361  SIRGTYNHAQYLEKRLHMMQWYSD  384
            SIR+TYNHA YL+ R +MMQWY+D
Sbjct  361  SIRDTYNHALYLDGRREMMQWYAD  384

67) SARI_03887 in NC_010067


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  473 bits (1781),  Expect = 9e-135, Method: Compositional matrix adjust.
 Identities = 268/384 (70%), Positives = 330/384 (86%), Gaps = 0/384 (0%)

Query  1    MALTDIQIKRAKPQDKPYTLNDGQGLSLLINPDGSKGWRFRFRFAGKARLMSFGSYDLVS  60
            MALTDI++K AKP+DKPY L DG G+ LLIN +GSK WR ++RFAGK +++S+G Y  V+
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   LaearekrdaarkQVANGIDPVEERKALKLAQKLSTENSFESVSREWHSTKADRWTVAYR  120
            LA+AREKR  ARK +A G DP E +K  K+AQ++S  N+FE+++REWH  KADRW++ YR
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  121  EEIIKTFEQDVFPFIGKRPIGEIKPLELLEVLRRIEKRGALEKTRKVRQRCGEVFRYAII  180
            +EII TFE+D+FP+IGKRPI+EIKP+ LLE LR++EKRGALEK RKVRQRCGEVFRYAI+
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  181  TGRAEYNPAPDLAIALAVPKQKHHPFLSAEELPHFIRDLEAYTGSIITKNATKIVMLTGV  240
            TGRA+YNPAPDLA ALA PK+ H PFL+A+ELPHF+ DL +YTGSIITK AT+I+MLTGV
Sbjct  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV  240

Query  241  RTQEMRFATWDEVNLEKGIWEIPAERMKMRRPHIVPLSTQVIDLFKQLKPITGHYPYIFI  300
            RTQE+RFA W+++++E  +WEIPAE MKM+RPHIVPLS QVI LFKQL PI+ H P +FI
Sbjct  241  RTQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHPLVFI  300

Query  301  GRNNRSKPISKESVSQVIELLGYKGRATGHGFRHTMSTILHEQGFDSAWIEIQLAHTDKN  360
            GRN+  KPISKES++Q IELLGYKGR TGHGFRHTMSTILHEQGF+SAWIE+QLAH DKN
Sbjct  301  GRNDPRKPISKESINQAIELLGYKGRLTGHGFRHTMSTILHEQGFNSAWIEMQLAHVDKN  360

Query  361  AIRGTYNHAIYLENRRIMLQWYSD  384
            +IR+TYNHA+YL+ RR M+QWY+D
Sbjct  361  SIRDTYNHALYLDGRREMMQWYAD  384

68) YPK_3149 in NC_010465


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  461 bits (1739),  Expect = 2e-131, Method: Compositional matrix adjust.
 Identities = 237/393 (61%), Positives = 330/393 (84%), Gaps = 0/393 (0%)

Query  1    MALTDVKVRSAKPTDKPYKLTDGEGMHLMVHPNGSKYWRLQYRFDGKQKMLALGIYPEIS  60
            MALTD+KV++AKP DKPYKL+DG GM L+++ NGSKYWR++YRF GK+KML++G+YP+++
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   LSEARQRRDEAKRQVANAIDPSEQKKVEKQARKATVENTFKAIALEWHEYKRPNWSKGYA  120
            L++AR++R EA++ +A + DP+E KK EK A++ ++ NTF AIA EWH+ K   WS  Y 
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  121  EDIMEAFENDIFPDIGKRPIAEIKPLEILSSLRKLEKRGVLDKLRKIRQACNQVFRYAIV  180
            ++I+++FE+DIFP IGKRPIAEIKP+ +L +LRK+EKRG L+K+RK+RQ C +VFRYAIV
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  181  TGRAESNPASELASALTPPKSVHYPHLLADELPAFLEALAAYSGSPITRLATKILMLTGV  240
            TGRA+ NPA++LASAL+ PK VH+P L A+ELP FL+ LA+Y+GS IT+ AT+I+MLTGV
Sbjct  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV  240

Query  241  RTIELRMAEWKEFDFDQRVWEVPVQRMKMRRPHLVPLSDQVVTALREIQAVTGRYNLVFP  300
            RT ELR A W ++DF+ ++WE+P + MKM+RPH+VPLS+QV+  ++++++++ +  LVF 
Sbjct  241  RTQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHPLVFI  300

Query  301  GRNDITKPMSEASINQVLKRIGYHGKATGHGFRHTMSTILHEQGYNTAWIELQLAHVDKN  360
            GRND  KP+S  SINQ +  +GY G+ TGHGFRHTMSTILHEQG+N+AWIE+QLAHVDKN
Sbjct  301  GRNDPRKPISKESINQAIELLGYKGRLTGHGFRHTMSTILHEQGFNSAWIEMQLAHVDKN  360

Query  361  TIRGTYNHAQYLEQRREMLQWYGEYVDGLAARG  393
            +IR+TYNHA YL+ RREM+QWY++Y+D+L++R 
Sbjct  361  SIRDTYNHALYLDGRREMMQWYADYIDSLSSRE  393

69) SEEB0189_04710 in NC_021844


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  458 bits (1727),  Expect = 2e-130, Method: Compositional matrix adjust.
 Identities = 247/393 (63%), Positives = 321/393 (82%), Gaps = 0/393 (0%)

Query  1    MKLTARQVETAKPKDKPYKLADGGGLYLLVNPNGKRYWRLKYRSLGKEKLLAIGVYPDVS  60
            M LT  +V TAKPKDKPYKLADGGG+YLL+N NG +YWR+KYR  GKEK+L+IGVYPDV+
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   LAEARNKREDAKRTLAAGNDPSLERKIEKLSRQQDAENSFEAITREWYQRRYDRWSVSYR  120
            LA+AR+KR +A++ LAAG DP+  +K EK+++Q    N+FEAI+REW Q + DRWS+ YR
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  121  EEMLRTFEKDVFPYIGHRPIKDIKPMELLAVLSKIEARGATEKVRKVRQRCGEVWKYAVV  180
            +E++ TFEKD+FPYIG RPI +IKPM LL  L K+E RGA EK+RKVRQRCGEV +YA+V
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  181  TGRAEYNPAPDLASAVTPHEKEHYAFLTQDELPEFLRTLNTYAGSVLVKIAMQLLILTGV  240
            TGRA+YNPAPDLASA++   K H++FLT +ELP+FL  L  Y+GS++ K A Q+++LTGV
Sbjct  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV  240

Query  241  RPGELRQAEWQEFDFERKVWNVPAERMKMRRPHMVPLSSQAIDLLNQLKPMTGAGTLLFP  300
            R  ELR A W+++DFE K+W++PAE MKM+RPH+VPLS Q I L++QL P++    L+F 
Sbjct  241  RTQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHPLVFI  300

Query  301  GRNNPKKPMSDMALTVLVRRIGYAGRVTGHGFRHTMSTILHEQGFNSAWIELQLAHVDKN  360
            GRN+P+KP+S  ++   +  +GY GR+TGHGFRHTMSTILHEQGFNSAWIE+QLAHVDKN
Sbjct  301  GRNDPRKPISKESINQAIELLGYKGRLTGHGFRHTMSTILHEQGFNSAWIEMQLAHVDKN  360

Query  361  SIRGTYNHAQYLEGRKEMMQWYGDFTSNLGKKG  393
            SIR+TYNHA YL+GR+EMMQWY+D+  +L+ + 
Sbjct  361  SIRDTYNHALYLDGRREMMQWYADYIDSLSSRE  393

70) A225_4904 in NC_018106


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  457 bits (1720),  Expect = 6e-130, Method: Compositional matrix adjust.
 Identities = 247/389 (64%), Positives = 320/389 (83%), Gaps = 0/389 (0%)

Query  1    MKLTARQVETAKPKEKPYKLADGGGLYLLVNPNGKRYWRLKYRSLGKEKLLAIGVYPDVS  60
            M LT  +V TAKPK+KPYKLADGGG+YLL+N NG +YWR+KYR  GKEK+L+IGVYPDV+
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   LAEARSKREDAKRTLAAGNDPSLERKIEKLSRQQDAENSFEALTREWYQRRYDRWSVSYR  120
            LA+AR KR +A++ LAAG DP+  +K EK+++Q    N+FEA++REW Q + DRWS+ YR
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  121  EEMMRTFEKDVFPYIGHRPIKDIKPMELLAVLSKIEARGATEKVRKVRQRCGEVWKYAVV  180
            +E++ TFEKD+FPYIG RPI +IKPM LL  L K+E RGA EK+RKVRQRCGEV +YA+V
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  181  TGRAEYNPAPDLASAVTPHEKEHYAFLTQDELPEFLQTLNTYAGSVLVKIAMQLLILTGV  240
            TGRA+YNPAPDLASA++   K H++FLT +ELP+FL+ L  Y+GS++ K A Q+++LTGV
Sbjct  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV  240

Query  241  RPGELRQAEWQEFDFEKKVWNVPAERMKMRRPHLVPLSSQAIDLLNQLKPMTGAGALLFP  300
            R  ELR A W+++DFE K+W++PAE MKM+RPH+VPLS Q I L++QL P++   +L+F 
Sbjct  241  RTQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHPLVFI  300

Query  301  GRNDPKKPMSDMALTVLVRRIGYAGRVTGHGFRHTMSTILHEQGFDSAWIELQLAHVDKN  360
            GRNDP+KP+S  ++   +  +GY GR+TGHGFRHTMSTILHEQGF+SAWIE+QLAHVDKN
Sbjct  301  GRNDPRKPISKESINQAIELLGYKGRLTGHGFRHTMSTILHEQGFNSAWIEMQLAHVDKN  360

Query  361  SIRGTYNHAQYLEGRREMMQWYSDYLKLL  389
            SIR+TYNHA YL+GRREMMQWY+DY+  L
Sbjct  361  SIRDTYNHALYLDGRREMMQWYADYIDSL  389

71) EAE_02780 in NC_015663


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  456 bits (1717),  Expect = 1e-129, Method: Compositional matrix adjust.
 Identities = 246/387 (64%), Positives = 316/387 (82%), Gaps = 0/387 (0%)

Query  1    MKLTARQVETAKPKEKPYKLADGGGLYLLVNPNGKRYWRLKYRSLGKEKLLAIGVYPDVS  60
            M LT  +V TAKPK+KPYKLADGGG+YLL+N NG +YWR+KYR  GKEK+L+IGVYPDV+
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   LSEARGKREDAKRTLAAGNDPSLERKIEKLSRQQNAENSFEAITREWYQRRYDRWSVSYR  120
            L++AR KR +A++ LAAG DP+  +K EK+++Q +  N+FEAI+REW Q + DRWS+ YR
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  121  EEMLRTFEKDVFPYIGHRPIKDIKPMELLAVLSKIEARGATEKVRKVRQRCGEVWKYAVV  180
            +E++ TFEKD+FPYIG RPI +IKPM LL  L K+E RGA EK+RKVRQRCGEV +YA+V
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  181  TGRAEYNPAPALASAVTPHEKEHYAFLTQDELPEFLRTLNTYAGSVIVKIAMQLLILTGV  240
            TGRA+YNPAP LASA++   K H++FLT +ELP+FL  L  Y+GS+I K A Q+++LTGV
Sbjct  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV  240

Query  241  RPGELRQAEWREFDFERKVWNVPAERMKMRRPHLVPLSGQAIDLLNQLKPMTEAGTLLFP  300
            R  ELR A W ++DFE K+W++PAE MKM+RPH+VPLS Q I L++QL P++    L+F 
Sbjct  241  RTQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHPLVFI  300

Query  301  GRNNPKKPMSEMALTVLVRRIGYAGRVTGHGFRHTMSTILHEQGFNSAWIELQLAHVDKN  360
            GRN+P+KP+S  ++   +  +GY GR+TGHGFRHTMSTILHEQGFNSAWIE+QLAHVDKN
Sbjct  301  GRNDPRKPISKESINQAIELLGYKGRLTGHGFRHTMSTILHEQGFNSAWIEMQLAHVDKN  360

Query  361  SIRGTYNHAQYLEGRREMMQWYSNYIS  387
            SIR+TYNHA YL+GRREMMQWY++YI 
Sbjct  361  SIRDTYNHALYLDGRREMMQWYADYID  387

72) YpsIP31758_0884 in NC_009708


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  453 bits (1708),  Expect = 5e-129, Method: Compositional matrix adjust.
 Identities = 257/394 (66%), Positives = 325/394 (83%), Gaps = 0/394 (0%)

Query  1    MKLNARQVETAKPKDKAYKLADGGGLYLLVNTNGSRYWRLKYRFAGKEKLLAVGVYPDVS  60
            M L   +V TAKPKDK+YKLADGGG+YLL+NTNGS+YWR+KYRFAGKEK+L++GVYPDV+
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   LAVARVKRDEAKKIVAGGGDPSQNKQQEKLARQGEATNTFEAITREWYQRRYDRWSESYR  120
            LA AR KR EA+K++A+GGDP++ K++EK+A+Q    NTFEAI+REW Q + DRWS  YR
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  121  LEMMSTFESDVFPYIGYRPIKEIKPLELMAVLSKLEKRGATEKMRKVRQRCGEVWKYAII  180
             E++ TFE D+FPYIG RPI EIKP+ L+  L K+EKRGA EKMRKVRQRCGEV +YAI+
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  181  TGRAEYNPAPDLASAFAPHKREHYPHLTINEIPEFLSSLASYSGSMLVKLAMRLLILTGT  240
            TGRA+YNPAPDLASA+A  K+ H+P LT NE+P+FL+ LA+Y+GS++ K A ++++LTG 
Sbjct  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV  240

Query  241  RPGELRQAEWAEFDFDNALWEIPAVRMKMRRPHMVPLPDQAITILKQIQPISGRYQFVFP  300
            R  ELR A W ++DF+  LWEIPA  MKM+RPH+VPL++Q I ++KQ++PIS +  +VF 
Sbjct  241  RTQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHPLVFI  300

Query  301  GRIQHSKPISEMTLNVLIRRIGYGGRATGHGFRHTMSTILHEQGFNTAWIETQLAHVDKN  360
            GR +  KPIS  ++N  I  +GY GR TGHGFRHTMSTILHEQGFN+AWIE QLAHVDKN
Sbjct  301  GRNDPRKPISKESINQAIELLGYKGRLTGHGFRHTMSTILHEQGFNSAWIEMQLAHVDKN  360

Query  361  SIRGTYNHAQYLDGRREMLQWYADYMDSLENGEN  394
            SIR+TYNHA YLDGRREM+QWYADY+DSL + E+
Sbjct  361  SIRDTYNHALYLDGRREMMQWYADYIDSLSSRES  394

73) int in NC_006155


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  453 bits (1708),  Expect = 5e-129, Method: Compositional matrix adjust.
 Identities = 257/394 (66%), Positives = 325/394 (83%), Gaps = 0/394 (0%)

Query  1    MKLNARQVETAKPKDKAYKLADGGGLYLLVNTNGSRYWRLKYRFAGKEKLLAVGVYPDVS  60
            M L   +V TAKPKDK+YKLADGGG+YLL+NTNGS+YWR+KYRFAGKEK+L++GVYPDV+
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   LAVARVKRDEAKKIVAGGGDPSQNKQQEKLARQGEATNTFEAITREWYQRRYDRWSESYR  120
            LA AR KR EA+K++A+GGDP++ K++EK+A+Q    NTFEAI+REW Q + DRWS  YR
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  121  LEMMSTFESDVFPYIGYRPIKEIKPLELMAVLSKLEKRGATEKMRKVRQRCGEVWKYAII  180
             E++ TFE D+FPYIG RPI EIKP+ L+  L K+EKRGA EKMRKVRQRCGEV +YAI+
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  181  TGRAEYNPAPDLASAFAPHKREHYPHLTINEIPEFLSSLASYSGSMLVKLAMRLLILTGT  240
            TGRA+YNPAPDLASA+A  K+ H+P LT NE+P+FL+ LA+Y+GS++ K A ++++LTG 
Sbjct  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV  240

Query  241  RPGELRQAEWAEFDFDNALWEIPAVRMKMRRPHMVPLPDQAITILKQIQPISGRYQFVFP  300
            R  ELR A W ++DF+  LWEIPA  MKM+RPH+VPL++Q I ++KQ++PIS +  +VF 
Sbjct  241  RTQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHPLVFI  300

Query  301  GRIQHSKPISEMTLNVLIRRIGYGGRATGHGFRHTMSTILHEQGFNTAWIETQLAHVDKN  360
            GR +  KPIS  ++N  I  +GY GR TGHGFRHTMSTILHEQGFN+AWIE QLAHVDKN
Sbjct  301  GRNDPRKPISKESINQAIELLGYKGRLTGHGFRHTMSTILHEQGFNSAWIEMQLAHVDKN  360

Query  361  SIRGTYNHAQYLDGRREMLQWYADYMDSLENGEN  394
            SIR+TYNHA YLDGRREM+QWYADY+DSL + E+
Sbjct  361  SIRDTYNHALYLDGRREMMQWYADYIDSLSSRES  394

74) YPTS_3293 in NC_010634


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  453 bits (1708),  Expect = 5e-129, Method: Compositional matrix adjust.
 Identities = 257/394 (66%), Positives = 325/394 (83%), Gaps = 0/394 (0%)

Query  1    MKLNARQVETAKPKDKAYKLADGGGLYLLVNTNGSRYWRLKYRFAGKEKLLAVGVYPDVS  60
            M L   +V TAKPKDK+YKLADGGG+YLL+NTNGS+YWR+KYRFAGKEK+L++GVYPDV+
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   LAVARVKRDEAKKIVAGGGDPSQNKQQEKLARQGEATNTFEAITREWYQRRYDRWSESYR  120
            LA AR KR EA+K++A+GGDP++ K++EK+A+Q    NTFEAI+REW Q + DRWS  YR
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  121  LEMMSTFESDVFPYIGYRPIKEIKPLELMAVLSKLEKRGATEKMRKVRQRCGEVWKYAII  180
             E++ TFE D+FPYIG RPI EIKP+ L+  L K+EKRGA EKMRKVRQRCGEV +YAI+
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  181  TGRAEYNPAPDLASAFAPHKREHYPHLTINEIPEFLSSLASYSGSMLVKLAMRLLILTGT  240
            TGRA+YNPAPDLASA+A  K+ H+P LT NE+P+FL+ LA+Y+GS++ K A ++++LTG 
Sbjct  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV  240

Query  241  RPGELRQAEWAEFDFDNALWEIPAVRMKMRRPHMVPLPDQAITILKQIQPISGRYQFVFP  300
            R  ELR A W ++DF+  LWEIPA  MKM+RPH+VPL++Q I ++KQ++PIS +  +VF 
Sbjct  241  RTQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHPLVFI  300

Query  301  GRIQHSKPISEMTLNVLIRRIGYGGRATGHGFRHTMSTILHEQGFNTAWIETQLAHVDKN  360
            GR +  KPIS  ++N  I  +GY GR TGHGFRHTMSTILHEQGFN+AWIE QLAHVDKN
Sbjct  301  GRNDPRKPISKESINQAIELLGYKGRLTGHGFRHTMSTILHEQGFNSAWIEMQLAHVDKN  360

Query  361  SIRGTYNHAQYLDGRREMLQWYADYMDSLENGEN  394
            SIR+TYNHA YLDGRREM+QWYADY+DSL + E+
Sbjct  361  SIRDTYNHALYLDGRREMMQWYADYIDSLSSRES  394

75) YPK_0925 in NC_010465


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  453 bits (1708),  Expect = 5e-129, Method: Compositional matrix adjust.
 Identities = 257/394 (66%), Positives = 325/394 (83%), Gaps = 0/394 (0%)

Query  1    MKLNARQVETAKPKDKAYKLADGGGLYLLVNTNGSRYWRLKYRFAGKEKLLAVGVYPDVS  60
            M L   +V TAKPKDK+YKLADGGG+YLL+NTNGS+YWR+KYRFAGKEK+L++GVYPDV+
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   LAVARVKRDEAKKIVAGGGDPSQNKQQEKLARQGEATNTFEAITREWYQRRYDRWSESYR  120
            LA AR KR EA+K++A+GGDP++ K++EK+A+Q    NTFEAI+REW Q + DRWS  YR
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  121  LEMMSTFESDVFPYIGYRPIKEIKPLELMAVLSKLEKRGATEKMRKVRQRCGEVWKYAII  180
             E++ TFE D+FPYIG RPI EIKP+ L+  L K+EKRGA EKMRKVRQRCGEV +YAI+
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  181  TGRAEYNPAPDLASAFAPHKREHYPHLTINEIPEFLSSLASYSGSMLVKLAMRLLILTGT  240
            TGRA+YNPAPDLASA+A  K+ H+P LT NE+P+FL+ LA+Y+GS++ K A ++++LTG 
Sbjct  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV  240

Query  241  RPGELRQAEWAEFDFDNALWEIPAVRMKMRRPHMVPLPDQAITILKQIQPISGRYQFVFP  300
            R  ELR A W ++DF+  LWEIPA  MKM+RPH+VPL++Q I ++KQ++PIS +  +VF 
Sbjct  241  RTQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHPLVFI  300

Query  301  GRIQHSKPISEMTLNVLIRRIGYGGRATGHGFRHTMSTILHEQGFNTAWIETQLAHVDKN  360
            GR +  KPIS  ++N  I  +GY GR TGHGFRHTMSTILHEQGFN+AWIE QLAHVDKN
Sbjct  301  GRNDPRKPISKESINQAIELLGYKGRLTGHGFRHTMSTILHEQGFNSAWIEMQLAHVDKN  360

Query  361  SIRGTYNHAQYLDGRREMLQWYADYMDSLENGEN  394
            SIR+TYNHA YLDGRREM+QWYADY+DSL + E+
Sbjct  361  SIRDTYNHALYLDGRREMMQWYADYIDSLSSRES  394

76) KOX_02335 in NC_016612


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  453 bits (1708),  Expect = 6e-129, Method: Compositional matrix adjust.
 Identities = 246/391 (63%), Positives = 318/391 (82%), Gaps = 0/391 (0%)

Query  1    MKLTARQVETAKPKEKPYKLADGGGLYLLVNPNGKRYWRLKYRSLGKEKLLAIGVYPDVS  60
            M LT  +V TAKPK+KPYKLADGGG+YLL+N NG +YWR+KYR  GKEK+L+IGVYPDV+
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   LAEARSKREDAKRTLSAGNDPSLERKIEKLSRQQDAENSFEAITREWYQRRYDRWSVSYR  120
            LA+AR KR +A++ L+AG DP+  +K EK+++Q    N+FEAI+REW Q + DRWS+ YR
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  121  EEMMRTFEKDVFPYIGHRPIKDIKPMELLAVLSKIEARGATEKVRKVRQRCGEVWKYAVV  180
            +E++ TFEKD+FPYIG RPI +IKPM LL  L K+E RGA EK+RKVRQRCGEV +YA+V
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  181  TGRAEYNPAPDLASAVTPHEKEHYAFLTQDELPEFLRTLNTYAGSVLVKIAMQLLILTGV  240
            TGRA+YNPAPDLASA++   K H++FLT +ELP+FL  L  Y+GS++ K A Q+++LTGV
Sbjct  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV  240

Query  241  RPGELRQAEWQEFDFEKKVWNVPAERMKMRRPHLVPLSSQAIDLLNQLKPMTGAGALLFP  300
            R  ELR A W+++DFE K+W++PAE MKM+RPH+VPLS Q I L++QL P++   +L+F 
Sbjct  241  RTQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHPLVFI  300

Query  301  GRNDPKKPMSDMALTVLVRRIGYAGRVTGHGFRHTMSTILHEQGFNSAWIELQLAHVDKN  360
            GRNDP+KP+S  ++   +  +GY GR+TGHGFRHTMSTILHEQGFNSAWIE+QLAHVDKN
Sbjct  301  GRNDPRKPISKESINQAIELLGYKGRLTGHGFRHTMSTILHEQGFNSAWIEMQLAHVDKN  360

Query  361  SIRGTYNHAQYLDGRREMMQWYGELLSFMCD  391
            SIR+TYNHA YLDGRREMMQWY++ +  +  
Sbjct  361  SIRDTYNHALYLDGRREMMQWYADYIDSLSS  391

77) int in NC_021591


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  453 bits (1707),  Expect = 7e-129, Method: Compositional matrix adjust.
 Identities = 237/390 (61%), Positives = 326/390 (84%), Gaps = 0/390 (0%)

Query  1    MALTDVKVRSAKPTDKPYKLTDGEGMHLMVHPNGSKYWRLQYRFDGKQKMLALGIYPEIS  60
            MALTD+KV++AKP DKPYKL+DG GM L+++ NGSKYWR++YRF GK+KML++G+YP+++
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   LSEARQRRDEAKRQVANAIDPSEQKKVEKQARKAMVENTFKAIALEWHEYKRPNWSKGYA  120
            L++AR++R EA++ +A + DP+E KK EK A++  + NTF AIA EWH+ K   WS  Y 
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  121  EDIMEAFENDIFPDIGKRPIAEIKPLEILSSLRKLEKRGVLDKLRKIRQACNQVFRYAIV  180
            ++I+++FE+DIFP IGKRPIAEIKP+ +L +LRK+EKRG L+K+RK+RQ C +VFRYAIV
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  181  TGRAETNPASELASALTSPKSVHYPHLLADDFPAFLQALAAYSGSPITRLATKILMLTGV  240
            TGRA+ NPA++LASAL++PK VH+P L A+++P FL+ LA+Y+GS IT+ AT+I+MLTGV
Sbjct  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV  240

Query  241  RTIELRMAEWKEFDFEKRVWEVPVERMKMRRPHLVPLSDQVVSSLREIQVVTGRYNLVFP  300
            RT ELR A W ++DFE ++WE+P E MKM+RPH+VPLS+QV+  +++++ ++ +  LVF 
Sbjct  241  RTQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHPLVFI  300

Query  301  GRNDITKPMSEASINQVLKRIGYHGKATGHGFRHTMSTILHEQGYNTAWIELQLAHVDKN  360
            GRND  KP+S  SINQ +  +GY G+ TGHGFRHTMSTILHEQG+N+AWIE+QLAHVDKN
Sbjct  301  GRNDPRKPISKESINQAIELLGYKGRLTGHGFRHTMSTILHEQGFNSAWIEMQLAHVDKN  360

Query  361  TIRGTYNHAQYLEQRREMLQWYGDYVDNLE  390
            +IR+TYNHA YL+ RREM+QWY+DY+D+L 
Sbjct  361  SIRDTYNHALYLDGRREMMQWYADYIDSLS  390

78) A1122_00590 in NC_017168


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  453 bits (1706),  Expect = 8e-129, Method: Compositional matrix adjust.
 Identities = 257/394 (66%), Positives = 325/394 (83%), Gaps = 0/394 (0%)

Query  1    MKLNARQVETAKPKDKAYKLADGGGLYLLVNTNGSRYWRLKYRFAGKEKLLALGVYPDVS  60
            M L   +V TAKPKDK+YKLADGGG+YLL+NTNGS+YWR+KYRFAGKEK+L++GVYPDV+
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   LAVARVKRDEAKKIVAGGGDPSQNKQQEKLARQGEATNTFEAITREWYQRRYDRWSESYR  120
            LA AR KR EA+K++A+GGDP++ K++EK+A+Q    NTFEAI+REW Q + DRWS  YR
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  121  LEMMSTFESDVFPYIGYRPIKEIKPLELMAVLSKLEKRGATEKMRKVRQRCGEVWKYAII  180
             E++ TFE D+FPYIG RPI EIKP+ L+  L K+EKRGA EKMRKVRQRCGEV +YAI+
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  181  TGRAEYNPAPDLASAFAPHKREHYPHLTINEIPEFLSSLASYSGSMLVKLAMRLLILTGT  240
            TGRA+YNPAPDLASA+A  K+ H+P LT NE+P+FL+ LA+Y+GS++ K A ++++LTG 
Sbjct  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV  240

Query  241  RPGELRQAEWAEFDFDNALWEIPAVRMKMRRPHMVPLPDQAITILKQIQPISGRYQFVFP  300
            R  ELR A W ++DF+  LWEIPA  MKM+RPH+VPL++Q I ++KQ++PIS +  +VF 
Sbjct  241  RTQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHPLVFI  300

Query  301  GRIQHSKPISEMTLNVLIRRIGYGGRATGHGFRHTMSTILHEQGFNTAWIETQLAHVDKN  360
            GR +  KPIS  ++N  I  +GY GR TGHGFRHTMSTILHEQGFN+AWIE QLAHVDKN
Sbjct  301  GRNDPRKPISKESINQAIELLGYKGRLTGHGFRHTMSTILHEQGFNSAWIEMQLAHVDKN  360

Query  361  SIRGTYNHAQYLDGRREMLQWYADYMDSLENGEN  394
            SIR+TYNHA YLDGRREM+QWYADY+DSL + E+
Sbjct  361  SIRDTYNHALYLDGRREMMQWYADYIDSLSSRES  394

79) YpAngola_A3853 in NC_010159


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  453 bits (1706),  Expect = 8e-129, Method: Compositional matrix adjust.
 Identities = 257/394 (66%), Positives = 325/394 (83%), Gaps = 0/394 (0%)

Query  1    MKLNARQVETAKPKDKAYKLADGGGLYLLVNTNGSRYWRLKYRFAGKEKLLALGVYPDVS  60
            M L   +V TAKPKDK+YKLADGGG+YLL+NTNGS+YWR+KYRFAGKEK+L++GVYPDV+
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   LAVARVKRDEAKKIVAGGGDPSQNKQQEKLARQGEATNTFEAITREWYQRRYDRWSESYR  120
            LA AR KR EA+K++A+GGDP++ K++EK+A+Q    NTFEAI+REW Q + DRWS  YR
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  121  LEMMSTFESDVFPYIGYRPIKEIKPLELMAVLSKLEKRGATEKMRKVRQRCGEVWKYAII  180
             E++ TFE D+FPYIG RPI EIKP+ L+  L K+EKRGA EKMRKVRQRCGEV +YAI+
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  181  TGRAEYNPAPDLASAFAPHKREHYPHLTINEIPEFLSSLASYSGSMLVKLAMRLLILTGT  240
            TGRA+YNPAPDLASA+A  K+ H+P LT NE+P+FL+ LA+Y+GS++ K A ++++LTG 
Sbjct  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV  240

Query  241  RPGELRQAEWAEFDFDNALWEIPAVRMKMRRPHMVPLPDQAITILKQIQPISGRYQFVFP  300
            R  ELR A W ++DF+  LWEIPA  MKM+RPH+VPL++Q I ++KQ++PIS +  +VF 
Sbjct  241  RTQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHPLVFI  300

Query  301  GRIQHSKPISEMTLNVLIRRIGYGGRATGHGFRHTMSTILHEQGFNTAWIETQLAHVDKN  360
            GR +  KPIS  ++N  I  +GY GR TGHGFRHTMSTILHEQGFN+AWIE QLAHVDKN
Sbjct  301  GRNDPRKPISKESINQAIELLGYKGRLTGHGFRHTMSTILHEQGFNSAWIEMQLAHVDKN  360

Query  361  SIRGTYNHAQYLDGRREMLQWYADYMDSLENGEN  394
            SIR+TYNHA YLDGRREM+QWYADY+DSL + E+
Sbjct  361  SIRDTYNHALYLDGRREMMQWYADYIDSLSSRES  394

80) YPC_0922 in NC_017265


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  453 bits (1706),  Expect = 8e-129, Method: Compositional matrix adjust.
 Identities = 257/394 (66%), Positives = 325/394 (83%), Gaps = 0/394 (0%)

Query  1    MKLNARQVETAKPKDKAYKLADGGGLYLLVNTNGSRYWRLKYRFAGKEKLLALGVYPDVS  60
            M L   +V TAKPKDK+YKLADGGG+YLL+NTNGS+YWR+KYRFAGKEK+L++GVYPDV+
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   LAVARVKRDEAKKIVAGGGDPSQNKQQEKLARQGEATNTFEAITREWYQRRYDRWSESYR  120
            LA AR KR EA+K++A+GGDP++ K++EK+A+Q    NTFEAI+REW Q + DRWS  YR
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  121  LEMMSTFESDVFPYIGYRPIKEIKPLELMAVLSKLEKRGATEKMRKVRQRCGEVWKYAII  180
             E++ TFE D+FPYIG RPI EIKP+ L+  L K+EKRGA EKMRKVRQRCGEV +YAI+
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  181  TGRAEYNPAPDLASAFAPHKREHYPHLTINEIPEFLSSLASYSGSMLVKLAMRLLILTGT  240
            TGRA+YNPAPDLASA+A  K+ H+P LT NE+P+FL+ LA+Y+GS++ K A ++++LTG 
Sbjct  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV  240

Query  241  RPGELRQAEWAEFDFDNALWEIPAVRMKMRRPHMVPLPDQAITILKQIQPISGRYQFVFP  300
            R  ELR A W ++DF+  LWEIPA  MKM+RPH+VPL++Q I ++KQ++PIS +  +VF 
Sbjct  241  RTQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHPLVFI  300

Query  301  GRIQHSKPISEMTLNVLIRRIGYGGRATGHGFRHTMSTILHEQGFNTAWIETQLAHVDKN  360
            GR +  KPIS  ++N  I  +GY GR TGHGFRHTMSTILHEQGFN+AWIE QLAHVDKN
Sbjct  301  GRNDPRKPISKESINQAIELLGYKGRLTGHGFRHTMSTILHEQGFNSAWIEMQLAHVDKN  360

Query  361  SIRGTYNHAQYLDGRREMLQWYADYMDSLENGEN  394
            SIR+TYNHA YLDGRREM+QWYADY+DSL + E+
Sbjct  361  SIRDTYNHALYLDGRREMMQWYADYIDSLSSRES  394

81) int4 in NC_005810


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  453 bits (1706),  Expect = 8e-129, Method: Compositional matrix adjust.
 Identities = 257/394 (66%), Positives = 325/394 (83%), Gaps = 0/394 (0%)

Query  1    MKLNARQVETAKPKDKAYKLADGGGLYLLVNTNGSRYWRLKYRFAGKEKLLALGVYPDVS  60
            M L   +V TAKPKDK+YKLADGGG+YLL+NTNGS+YWR+KYRFAGKEK+L++GVYPDV+
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   LAVARVKRDEAKKIVAGGGDPSQNKQQEKLARQGEATNTFEAITREWYQRRYDRWSESYR  120
            LA AR KR EA+K++A+GGDP++ K++EK+A+Q    NTFEAI+REW Q + DRWS  YR
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  121  LEMMSTFESDVFPYIGYRPIKEIKPLELMAVLSKLEKRGATEKMRKVRQRCGEVWKYAII  180
             E++ TFE D+FPYIG RPI EIKP+ L+  L K+EKRGA EKMRKVRQRCGEV +YAI+
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  181  TGRAEYNPAPDLASAFAPHKREHYPHLTINEIPEFLSSLASYSGSMLVKLAMRLLILTGT  240
            TGRA+YNPAPDLASA+A  K+ H+P LT NE+P+FL+ LA+Y+GS++ K A ++++LTG 
Sbjct  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV  240

Query  241  RPGELRQAEWAEFDFDNALWEIPAVRMKMRRPHMVPLPDQAITILKQIQPISGRYQFVFP  300
            R  ELR A W ++DF+  LWEIPA  MKM+RPH+VPL++Q I ++KQ++PIS +  +VF 
Sbjct  241  RTQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHPLVFI  300

Query  301  GRIQHSKPISEMTLNVLIRRIGYGGRATGHGFRHTMSTILHEQGFNTAWIETQLAHVDKN  360
            GR +  KPIS  ++N  I  +GY GR TGHGFRHTMSTILHEQGFN+AWIE QLAHVDKN
Sbjct  301  GRNDPRKPISKESINQAIELLGYKGRLTGHGFRHTMSTILHEQGFNSAWIEMQLAHVDKN  360

Query  361  SIRGTYNHAQYLDGRREMLQWYADYMDSLENGEN  394
            SIR+TYNHA YLDGRREM+QWYADY+DSL + E+
Sbjct  361  SIRDTYNHALYLDGRREMMQWYADYIDSLSSRES  394

82) int in NC_003143


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  453 bits (1706),  Expect = 8e-129, Method: Compositional matrix adjust.
 Identities = 257/394 (66%), Positives = 325/394 (83%), Gaps = 0/394 (0%)

Query  1    MKLNARQVETAKPKDKAYKLADGGGLYLLVNTNGSRYWRLKYRFAGKEKLLALGVYPDVS  60
            M L   +V TAKPKDK+YKLADGGG+YLL+NTNGS+YWR+KYRFAGKEK+L++GVYPDV+
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   LAVARVKRDEAKKIVAGGGDPSQNKQQEKLARQGEATNTFEAITREWYQRRYDRWSESYR  120
            LA AR KR EA+K++A+GGDP++ K++EK+A+Q    NTFEAI+REW Q + DRWS  YR
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  121  LEMMSTFESDVFPYIGYRPIKEIKPLELMAVLSKLEKRGATEKMRKVRQRCGEVWKYAII  180
             E++ TFE D+FPYIG RPI EIKP+ L+  L K+EKRGA EKMRKVRQRCGEV +YAI+
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  181  TGRAEYNPAPDLASAFAPHKREHYPHLTINEIPEFLSSLASYSGSMLVKLAMRLLILTGT  240
            TGRA+YNPAPDLASA+A  K+ H+P LT NE+P+FL+ LA+Y+GS++ K A ++++LTG 
Sbjct  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV  240

Query  241  RPGELRQAEWAEFDFDNALWEIPAVRMKMRRPHMVPLPDQAITILKQIQPISGRYQFVFP  300
            R  ELR A W ++DF+  LWEIPA  MKM+RPH+VPL++Q I ++KQ++PIS +  +VF 
Sbjct  241  RTQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHPLVFI  300

Query  301  GRIQHSKPISEMTLNVLIRRIGYGGRATGHGFRHTMSTILHEQGFNTAWIETQLAHVDKN  360
            GR +  KPIS  ++N  I  +GY GR TGHGFRHTMSTILHEQGFN+AWIE QLAHVDKN
Sbjct  301  GRNDPRKPISKESINQAIELLGYKGRLTGHGFRHTMSTILHEQGFNSAWIEMQLAHVDKN  360

Query  361  SIRGTYNHAQYLDGRREMLQWYADYMDSLENGEN  394
            SIR+TYNHA YLDGRREM+QWYADY+DSL + E+
Sbjct  361  SIRDTYNHALYLDGRREMMQWYADYIDSLSSRES  394

83) int in NC_017154


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  453 bits (1706),  Expect = 8e-129, Method: Compositional matrix adjust.
 Identities = 257/394 (66%), Positives = 325/394 (83%), Gaps = 0/394 (0%)

Query  1    MKLNARQVETAKPKDKAYKLADGGGLYLLVNTNGSRYWRLKYRFAGKEKLLALGVYPDVS  60
            M L   +V TAKPKDK+YKLADGGG+YLL+NTNGS+YWR+KYRFAGKEK+L++GVYPDV+
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   LAVARVKRDEAKKIVAGGGDPSQNKQQEKLARQGEATNTFEAITREWYQRRYDRWSESYR  120
            LA AR KR EA+K++A+GGDP++ K++EK+A+Q    NTFEAI+REW Q + DRWS  YR
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  121  LEMMSTFESDVFPYIGYRPIKEIKPLELMAVLSKLEKRGATEKMRKVRQRCGEVWKYAII  180
             E++ TFE D+FPYIG RPI EIKP+ L+  L K+EKRGA EKMRKVRQRCGEV +YAI+
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  181  TGRAEYNPAPDLASAFAPHKREHYPHLTINEIPEFLSSLASYSGSMLVKLAMRLLILTGT  240
            TGRA+YNPAPDLASA+A  K+ H+P LT NE+P+FL+ LA+Y+GS++ K A ++++LTG 
Sbjct  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV  240

Query  241  RPGELRQAEWAEFDFDNALWEIPAVRMKMRRPHMVPLPDQAITILKQIQPISGRYQFVFP  300
            R  ELR A W ++DF+  LWEIPA  MKM+RPH+VPL++Q I ++KQ++PIS +  +VF 
Sbjct  241  RTQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHPLVFI  300

Query  301  GRIQHSKPISEMTLNVLIRRIGYGGRATGHGFRHTMSTILHEQGFNTAWIETQLAHVDKN  360
            GR +  KPIS  ++N  I  +GY GR TGHGFRHTMSTILHEQGFN+AWIE QLAHVDKN
Sbjct  301  GRNDPRKPISKESINQAIELLGYKGRLTGHGFRHTMSTILHEQGFNSAWIEMQLAHVDKN  360

Query  361  SIRGTYNHAQYLDGRREMLQWYADYMDSLENGEN  394
            SIR+TYNHA YLDGRREM+QWYADY+DSL + E+
Sbjct  361  SIRDTYNHALYLDGRREMMQWYADYIDSLSSRES  394

84) int in NC_017160


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  453 bits (1706),  Expect = 8e-129, Method: Compositional matrix adjust.
 Identities = 257/394 (66%), Positives = 325/394 (83%), Gaps = 0/394 (0%)

Query  1    MKLNARQVETAKPKDKAYKLADGGGLYLLVNTNGSRYWRLKYRFAGKEKLLALGVYPDVS  60
            M L   +V TAKPKDK+YKLADGGG+YLL+NTNGS+YWR+KYRFAGKEK+L++GVYPDV+
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   LAVARVKRDEAKKIVAGGGDPSQNKQQEKLARQGEATNTFEAITREWYQRRYDRWSESYR  120
            LA AR KR EA+K++A+GGDP++ K++EK+A+Q    NTFEAI+REW Q + DRWS  YR
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  121  LEMMSTFESDVFPYIGYRPIKEIKPLELMAVLSKLEKRGATEKMRKVRQRCGEVWKYAII  180
             E++ TFE D+FPYIG RPI EIKP+ L+  L K+EKRGA EKMRKVRQRCGEV +YAI+
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  181  TGRAEYNPAPDLASAFAPHKREHYPHLTINEIPEFLSSLASYSGSMLVKLAMRLLILTGT  240
            TGRA+YNPAPDLASA+A  K+ H+P LT NE+P+FL+ LA+Y+GS++ K A ++++LTG 
Sbjct  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV  240

Query  241  RPGELRQAEWAEFDFDNALWEIPAVRMKMRRPHMVPLPDQAITILKQIQPISGRYQFVFP  300
            R  ELR A W ++DF+  LWEIPA  MKM+RPH+VPL++Q I ++KQ++PIS +  +VF 
Sbjct  241  RTQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHPLVFI  300

Query  301  GRIQHSKPISEMTLNVLIRRIGYGGRATGHGFRHTMSTILHEQGFNTAWIETQLAHVDKN  360
            GR +  KPIS  ++N  I  +GY GR TGHGFRHTMSTILHEQGFN+AWIE QLAHVDKN
Sbjct  301  GRNDPRKPISKESINQAIELLGYKGRLTGHGFRHTMSTILHEQGFNSAWIEMQLAHVDKN  360

Query  361  SIRGTYNHAQYLDGRREMLQWYADYMDSLENGEN  394
            SIR+TYNHA YLDGRREM+QWYADY+DSL + E+
Sbjct  361  SIRDTYNHALYLDGRREMMQWYADYIDSLSSRES  394

85) y3271 in NC_004088


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  453 bits (1706),  Expect = 8e-129, Method: Compositional matrix adjust.
 Identities = 257/394 (66%), Positives = 325/394 (83%), Gaps = 0/394 (0%)

Query  1    MKLNARQVETAKPKDKAYKLADGGGLYLLVNTNGSRYWRLKYRFAGKEKLLALGVYPDVS  60
            M L   +V TAKPKDK+YKLADGGG+YLL+NTNGS+YWR+KYRFAGKEK+L++GVYPDV+
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   LAVARVKRDEAKKIVAGGGDPSQNKQQEKLARQGEATNTFEAITREWYQRRYDRWSESYR  120
            LA AR KR EA+K++A+GGDP++ K++EK+A+Q    NTFEAI+REW Q + DRWS  YR
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  121  LEMMSTFESDVFPYIGYRPIKEIKPLELMAVLSKLEKRGATEKMRKVRQRCGEVWKYAII  180
             E++ TFE D+FPYIG RPI EIKP+ L+  L K+EKRGA EKMRKVRQRCGEV +YAI+
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  181  TGRAEYNPAPDLASAFAPHKREHYPHLTINEIPEFLSSLASYSGSMLVKLAMRLLILTGT  240
            TGRA+YNPAPDLASA+A  K+ H+P LT NE+P+FL+ LA+Y+GS++ K A ++++LTG 
Sbjct  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV  240

Query  241  RPGELRQAEWAEFDFDNALWEIPAVRMKMRRPHMVPLPDQAITILKQIQPISGRYQFVFP  300
            R  ELR A W ++DF+  LWEIPA  MKM+RPH+VPL++Q I ++KQ++PIS +  +VF 
Sbjct  241  RTQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHPLVFI  300

Query  301  GRIQHSKPISEMTLNVLIRRIGYGGRATGHGFRHTMSTILHEQGFNTAWIETQLAHVDKN  360
            GR +  KPIS  ++N  I  +GY GR TGHGFRHTMSTILHEQGFN+AWIE QLAHVDKN
Sbjct  301  GRNDPRKPISKESINQAIELLGYKGRLTGHGFRHTMSTILHEQGFNSAWIEMQLAHVDKN  360

Query  361  SIRGTYNHAQYLDGRREMLQWYADYMDSLENGEN  394
            SIR+TYNHA YLDGRREM+QWYADY+DSL + E+
Sbjct  361  SIRDTYNHALYLDGRREMMQWYADYIDSLSSRES  394

86) YPN_3086 in NC_008149


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  453 bits (1706),  Expect = 8e-129, Method: Compositional matrix adjust.
 Identities = 257/394 (66%), Positives = 325/394 (83%), Gaps = 0/394 (0%)

Query  1    MKLNARQVETAKPKDKAYKLADGGGLYLLVNTNGSRYWRLKYRFAGKEKLLALGVYPDVS  60
            M L   +V TAKPKDK+YKLADGGG+YLL+NTNGS+YWR+KYRFAGKEK+L++GVYPDV+
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   LAVARVKRDEAKKIVAGGGDPSQNKQQEKLARQGEATNTFEAITREWYQRRYDRWSESYR  120
            LA AR KR EA+K++A+GGDP++ K++EK+A+Q    NTFEAI+REW Q + DRWS  YR
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  121  LEMMSTFESDVFPYIGYRPIKEIKPLELMAVLSKLEKRGATEKMRKVRQRCGEVWKYAII  180
             E++ TFE D+FPYIG RPI EIKP+ L+  L K+EKRGA EKMRKVRQRCGEV +YAI+
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  181  TGRAEYNPAPDLASAFAPHKREHYPHLTINEIPEFLSSLASYSGSMLVKLAMRLLILTGT  240
            TGRA+YNPAPDLASA+A  K+ H+P LT NE+P+FL+ LA+Y+GS++ K A ++++LTG 
Sbjct  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV  240

Query  241  RPGELRQAEWAEFDFDNALWEIPAVRMKMRRPHMVPLPDQAITILKQIQPISGRYQFVFP  300
            R  ELR A W ++DF+  LWEIPA  MKM+RPH+VPL++Q I ++KQ++PIS +  +VF 
Sbjct  241  RTQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHPLVFI  300

Query  301  GRIQHSKPISEMTLNVLIRRIGYGGRATGHGFRHTMSTILHEQGFNTAWIETQLAHVDKN  360
            GR +  KPIS  ++N  I  +GY GR TGHGFRHTMSTILHEQGFN+AWIE QLAHVDKN
Sbjct  301  GRNDPRKPISKESINQAIELLGYKGRLTGHGFRHTMSTILHEQGFNSAWIEMQLAHVDKN  360

Query  361  SIRGTYNHAQYLDGRREMLQWYADYMDSLENGEN  394
            SIR+TYNHA YLDGRREM+QWYADY+DSL + E+
Sbjct  361  SIRDTYNHALYLDGRREMMQWYADYIDSLSSRES  394

87) int in NC_014029


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  453 bits (1706),  Expect = 8e-129, Method: Compositional matrix adjust.
 Identities = 257/394 (66%), Positives = 325/394 (83%), Gaps = 0/394 (0%)

Query  1    MKLNARQVETAKPKDKAYKLADGGGLYLLVNTNGSRYWRLKYRFAGKEKLLALGVYPDVS  60
            M L   +V TAKPKDK+YKLADGGG+YLL+NTNGS+YWR+KYRFAGKEK+L++GVYPDV+
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   LAVARVKRDEAKKIVAGGGDPSQNKQQEKLARQGEATNTFEAITREWYQRRYDRWSESYR  120
            LA AR KR EA+K++A+GGDP++ K++EK+A+Q    NTFEAI+REW Q + DRWS  YR
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  121  LEMMSTFESDVFPYIGYRPIKEIKPLELMAVLSKLEKRGATEKMRKVRQRCGEVWKYAII  180
             E++ TFE D+FPYIG RPI EIKP+ L+  L K+EKRGA EKMRKVRQRCGEV +YAI+
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  181  TGRAEYNPAPDLASAFAPHKREHYPHLTINEIPEFLSSLASYSGSMLVKLAMRLLILTGT  240
            TGRA+YNPAPDLASA+A  K+ H+P LT NE+P+FL+ LA+Y+GS++ K A ++++LTG 
Sbjct  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV  240

Query  241  RPGELRQAEWAEFDFDNALWEIPAVRMKMRRPHMVPLPDQAITILKQIQPISGRYQFVFP  300
            R  ELR A W ++DF+  LWEIPA  MKM+RPH+VPL++Q I ++KQ++PIS +  +VF 
Sbjct  241  RTQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHPLVFI  300

Query  301  GRIQHSKPISEMTLNVLIRRIGYGGRATGHGFRHTMSTILHEQGFNTAWIETQLAHVDKN  360
            GR +  KPIS  ++N  I  +GY GR TGHGFRHTMSTILHEQGFN+AWIE QLAHVDKN
Sbjct  301  GRNDPRKPISKESINQAIELLGYKGRLTGHGFRHTMSTILHEQGFNSAWIEMQLAHVDKN  360

Query  361  SIRGTYNHAQYLDGRREMLQWYADYMDSLENGEN  394
            SIR+TYNHA YLDGRREM+QWYADY+DSL + E+
Sbjct  361  SIRDTYNHALYLDGRREMMQWYADYIDSLSSRES  394

88) YPDSF_0629 in NC_009381


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  452 bits (1701),  Expect = 2e-128, Method: Compositional matrix adjust.
 Identities = 257/394 (66%), Positives = 325/394 (83%), Gaps = 0/394 (0%)

Query  1    MKLNARQVETAKPKDKAYKLADGGGLYLLVNTNGSRYWRLKYRFAGKEKLLALGVYPDVS  60
            M L   +V TAKPKDK+YKLADGGG+YLL+NTNGS+YWR+KYRFAGKEK+L++GVYPDV+
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   LAVARVKRDEAKKIVAGGGDPSQNKQQEKLARQGEATNTFEAITREWYQRRYDRWSESYR  120
            LA AR KR EA+K++A+GGDP++ K++EK+A+Q    NTFEAI+REW Q + DRWS  YR
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  121  LEMMSTFESDVFPYIGYRPIKEIKPLELMAVLSKLEKRGATEKMRKVRQRCGEVWKYAII  180
             E++ TFE D+FPYIG RPI EIKP+ L+  L K+EKRGA EKMRKVRQRCGEV +YAI+
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  181  TGRAEYNPAPDLASAFAPHKREHYPHLTINEIPEFLSSLASYSGSMLVKLAMRLLILTGT  240
            TGRA+YNPAPDLASA+A  K+ H+P LT NE+P+FL+ LA+Y+GS++ K A ++++LTG 
Sbjct  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV  240

Query  241  RPGELRQAEWVEFDFDNALWEIPAVRMKMRRPHMVPLPDQAITILKQIQPISGRYQFVFP  300
            R  ELR A W ++DF+  LWEIPA  MKM+RPH+VPL++Q I ++KQ++PIS +  +VF 
Sbjct  241  RTQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHPLVFI  300

Query  301  GRIQHSKPISEMTLNVLIRRIGYGGRATGHGFRHTMSTILHEQGFNTAWIETQLAHVDKN  360
            GR +  KPIS  ++N  I  +GY GR TGHGFRHTMSTILHEQGFN+AWIE QLAHVDKN
Sbjct  301  GRNDPRKPISKESINQAIELLGYKGRLTGHGFRHTMSTILHEQGFNSAWIEMQLAHVDKN  360

Query  361  SIRGTYNHAQYLDGRREMLQWYADYMDSLENGEN  394
            SIR+TYNHA YLDGRREM+QWYADY+DSL + E+
Sbjct  361  SIRDTYNHALYLDGRREMMQWYADYIDSLSSRES  394

89) M621_05660 in NC_021659


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  452 bits (1701),  Expect = 2e-128, Method: Compositional matrix adjust.
 Identities = 238/390 (62%), Positives = 324/390 (84%), Gaps = 0/390 (0%)

Query  1    MALTDVKVRSAKPTDKPYKLTDGEGMHLMVHPNGSKYWRLQYRFDGKQKMLALGIYPEIS  60
            MALTD+KV++AKP DKPYKL+DG GM L+++ NGSKYWR++YRF GK+KML++G+YP+++
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   LSEARQRRDEAKRQVANAIDPSEQKKVEKQARKATVENTFKAIALEWHEYKRPNWSKGYA  120
            L++AR++R EA++ +A + DP+E KK EK A++ ++ NTF AIA EWH+ K   WS  Y 
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  121  EDIMEAFENDIFPDIGKRPIAEIKPLEILSSLRKLEKRGVLDKLRKIRQACNQVFRYAIV  180
            ++I+++FE+DIFP IGKRPIAEIKP+ +L +LRK+EKRG L+K+RK+RQ C +VFRYAIV
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  181  TGRAETNPASELASALTPPKSVHYPHLLADDFPAFLQALATYSGSPITRLATKILMLTGV  240
            TGRA+ NPA++LASAL+ PK VH+P L A+++P FL+ LA Y+GS IT+ AT+I+MLTGV
Sbjct  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV  240

Query  241  RTIELRMAEWKEFDFEKRVWEVPVERMKMRRPHLVPLSDQVVSSLREIQVVTGRYNLVFP  300
            RT ELR A W ++DFE ++WE+P E MKM+RPH+VPLS+QV+  +++++ ++ +  LVF 
Sbjct  241  RTQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHPLVFI  300

Query  301  GRNDITKPMSEASINQVLKRIGYHGKATGHGFRHTMSTILHEQGYNTAWIELQLAHVDKN  360
            GRND  KP+S  SINQ +  +GY G+ TGHGFRHTMSTILHEQG+N+AWIE+QLAHVDKN
Sbjct  301  GRNDPRKPISKESINQAIELLGYKGRLTGHGFRHTMSTILHEQGFNSAWIEMQLAHVDKN  360

Query  361  TIRGTYNHAQYLDQRRVMLQWYADYMDNLE  390
            +IR+TYNHA YLD RR M+QWYADY+D+L 
Sbjct  361  SIRDTYNHALYLDGRREMMQWYADYIDSLS  390

90) int in NC_011740


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  451 bits (1698),  Expect = 3e-128, Method: Compositional matrix adjust.
 Identities = 246/386 (64%), Positives = 316/386 (82%), Gaps = 0/386 (0%)

Query  1    MKLTARQVETAKPKDKPYKLADGGGLYLLVNPNGKRYWRLKYRSLGKEKLLAIGVYPDVS  60
            M LT  +V TAKPKDKPYKLADGGG+YLL+N NG +YWR+KYR  GKEK+L+IGVYPDV+
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   LAEARSKREDAKRTLAVGNDPSLERKIEKLSRQQDAENSFEAITREWYQRRYDRWSVSYR  120
            LA+AR KR +A++ LA G DP+  +K EK+++Q    N+FEAI+REW Q + DRWS+ YR
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  121  EEMLRTFEKDVFPYIGHRPIKDIKPMELLAVLSKIEARGATEKVRKVRQRCGEVWKYAVV  180
            +E++ TFEKD+FPYIG RPI +IKPM LL  L K+E RGA EK+RKVRQRCGEV +YA+V
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  181  TGRAEYNPAPDLASAVTPHEKEHYAFLTQDELPEFLRTLNTYAGSVLVKIAMQLLILTGV  240
            TGRA+YNPAPDLASA++   K H++FLT +ELP+FL  L  Y+GS++ K A Q+++LTGV
Sbjct  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV  240

Query  241  RPGELRQAEWQEFDFERKVWNVPAERMKMRRPHLVPLSSQAIDLLNQLKPMTGAGALLFP  300
            R  ELR A W+++DFE K+W++PAE MKM+RPH+VPLS Q I L++QL P++   +L+F 
Sbjct  241  RTQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHPLVFI  300

Query  301  GRNNPKKSMSDMALIVLVRRIGYAGRVTGHGFRHTMSTILHEQGFNSAWIELQLAHVDKN  360
            GRN+P+K++S  ++   +  +GY GR+TGHGFRHTMSTILHEQGFNSAWIE+QLAHVDKN
Sbjct  301  GRNDPRKPISKESINQAIELLGYKGRLTGHGFRHTMSTILHEQGFNSAWIEMQLAHVDKN  360

Query  361  SIRGTYNHAQYLEGRREMMQWYGDLI  386
            SIR+TYNHA YL+GRREMMQWY+D I
Sbjct  361  SIRDTYNHALYLDGRREMMQWYADYI  386

91) PAU_01003 in NC_012962


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  449 bits (1690),  Expect = 1e-127, Method: Compositional matrix adjust.
 Identities = 240/389 (62%), Positives = 321/389 (83%), Gaps = 0/389 (0%)

Query  1    MKLNARQVESAKAKATDYKLADGSGLYLLVKKNGARYWRLKYRIAGKEKLLALGIYPNLS  60
            M L   +V +AK+K   YKLADG+G+YLL++ NG++YWR+KYR+AGKEK+L++G+YP+++
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   LANARAKRDEAKQHLANGVDPAEVKKTKQKEIIRQATNTFEAIAKEWHSYKLPNWSVGYA  120
            LA+AR KR EA++ LA G DP+E KK  +        NTFEAIA+EWH  K   WS+ Y 
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  121  DDLLESFNKDIFPYIGKRIITDIKPLDMLETLRKMEQRGVLDKLKKIRQACSQVFKYAIV  180
            D+++++F+KDIFPYIGKR I++IKP+ +LE+LRKME+RG L+K++K+RQ C++VF+YAIV
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  181  TGRSEYNPAAELSGALASPKVKHFPHLLADELPLFLQTLSQYKGSIITQIATKLLLLTGV  240
            TGR++YNPA++L++ALA+PK  HFP L A+ELP FL+ L+ Y GSIIT+ AT++++LTGV
Sbjct  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV  240

Query  241  RTIELRAAKWDELDLDRKIWEIPLERMKMRRTHIVPLSEQVLSLFKTLEVITGRFEFIFH  300
            RT ELR A+W+++D++ K+WEIP E MKM+R HIVPLSEQV+ LFK LE I+ +  ++F 
Sbjct  241  RTQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHPLVFI  300

Query  301  GRNDPNKPMSEAAINQVIKRIGYGSRATGHGFRHTMSTILHEQGYNTAWIETQLAHVDKN  360
            GRNDP KP+S  +INQ I  +GY +R TGHGFRHTMSTILHEQG+N+AWIE QLAHVDKN
Sbjct  301  GRNDPRKPISKESINQAIELLGYKGRLTGHGFRHTMSTILHEQGFNSAWIEMQLAHVDKN  360

Query  361  SIRGTYNHAQYLDGRREMLQWYADYMDSL  389
            SIR+TYNHA YLDGRREM+QWYADY+DSL
Sbjct  361  SIRDTYNHALYLDGRREMMQWYADYIDSL  389

92) EcHS_A0329 in NC_009800


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  447 bits (1683),  Expect = 5e-127, Method: Compositional matrix adjust.
 Identities = 243/388 (63%), Positives = 318/388 (82%), Gaps = 0/388 (0%)

Query  1    MKLNARQVDAAKPREKAYKLADGAGLYLEVVPSGSRYWRMKYRFNGKEKRMAFGVYPAVS  60
            M L   +V +AKP++K+YKLADG+G+YL +  +GS+YWRMKYRF GKEK +++GVYP V+
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   LAQARALRDDAKKKLAEGIDPSLAKKEEKLVRDVQLNNTFQAVALEWHGTKVSRWSEGYA  120
            LA+AR  R +A+K LA G DP+ AKKEEK+ +++ L+NTF+A+A EWH  K  RWS  Y 
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  121  SDIIEAFNKDIFPYIGQQPVNEIKPLVLLNVLRRIESRGATEKAKKVRQRCSEVFRYAIV  180
             +II++F+KDIFPYIG++P+ EIKP+ LL+ LR++E RGA EK +KVRQRC+EVFRYAIV
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  181  TGRAEYNPAADLTSAMSGHESKHYPFLTVEELPDFFKALAGYTGSPLVVLAARLLILTGV  240
            TGRA+YNPA+DL+SA++     H+PFLT +ELP+F++ LAGYTGS +   A+++++LTGV
Sbjct  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV  240

Query  241  RTGELRGAFWSEFDLEKAVWEIPAERMKMKRPHLVPLSTQALEIVQQLKVMSGQYPLVFP  300
            RT ELR A W ++D+E  +WEIPAE MKMKRPH+VPLS Q + + +QL  +S + PLVF 
Sbjct  241  RTQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHPLVFI  300

Query  301  GRNDPRKTMSEASINQVFKRIGYTGRVTGHGFRHTMSTILHEEGFNTAWIETQLAHVDKN  360
            GRNDPRK +S  SINQ +  +GY GR+TGHGFRHTMSTILHE+GFN+AWIE QLAHVDKN
Sbjct  301  GRNDPRKPISKESINQAIELLGYKGRLTGHGFRHTMSTILHEQGFNSAWIEMQLAHVDKN  360

Query  361  AIRGTYNHALYLEGRREMMQWYADYINA  388
            +IR+TYNHALYL+GRREMMQWYADYI++
Sbjct  361  SIRDTYNHALYLDGRREMMQWYADYIDS  388

93) ETAC_13020 in NC_020796


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  446 bits (1680),  Expect = 9e-127, Method: Compositional matrix adjust.
 Identities = 241/394 (62%), Positives = 321/394 (82%), Gaps = 0/394 (0%)

Query  1    MKLNARQVEASKAKDKPYKLADGGGLYLLVNPNGTKYWRLKYRVAGKEKLLAVGVYPNVT  60
            M L   +V ++K+KDKPYKLADGGG+YLL+N NG+KYWR+KYR AGKEK+L++GVYP+VT
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   LADARVKREDAKRVLAAGGDPGQEKQEEKRAKVMAVTNSFEKLAREWHEHKRPTWSKGYA  120
            LADAR KR +A+++LAAGGDPG+ K+EEK A+ M++ N+FE +AREWH+ K   WS  Y 
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  121  DDILEYLRKDIFPYIGKRAITDIKPMDMLAVLRKMEQRGVLDKLKKTRQACRQIFTYAVI  180
            D+I++ + KDIFPYIGKR+I++IKPM +L  LRKME+RG L+K++K RQ C ++F YA++
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  181  TGRAEHNPVVDLASALKTPKQKHFPHLMADQLGEFLRALADYSGSRVTQNATRLLMLTGV  240
            TGRA+ NP  DLASAL TPK+ HFP L A++L +FL  LA+Y+GS +T+ AT+++MLTGV
Sbjct  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV  240

Query  241  RTVELRAAEWAEVDLDLSLWQIPPERMKMRRPHIVPLSEQALAIMQEMRRISGKGKYIFP  300
            RT ELR A W ++D++  LW+IP+E MKM+RPHIVPLSEQ + + +++  IS     +F 
Sbjct  241  RTQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHPLVFI  300

Query  301  GRNDAGKPMSEASINQVIKRIGYDGKATGHGFRHTMSTILHEQGYNTAWVETQLAHADKN  360
            GRND+ KP+S  SINQ I  +GY G+ TGHGFRHTMSTILHEQG+N+AW+E QLAH DKN
Sbjct  301  GRNDPRKPISKESINQAIELLGYKGRLTGHGFRHTMSTILHEQGFNSAWIEMQLAHVDKN  360

Query  361  SIRGTYNHAQYLDGRREMLQWYADYLDALANGDN  394
            SIR+TYNHA YLDGRREM+QWYADY+D+L++ ++
Sbjct  361  SIRDTYNHALYLDGRREMMQWYADYIDSLSSRES  394

94) Dda3937_00938 in NC_014500


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  445 bits (1678),  Expect = 1e-126, Method: Compositional matrix adjust.
 Identities = 244/391 (63%), Positives = 318/391 (82%), Gaps = 0/391 (0%)

Query  1    MKLNARQVDTAKPKDKPYKLSDGGGLYLLVNPNGSRYWRLKYRVDGKEKLLALGVYPAIS  60
            M L   +V TAKPKDKPYKL+DGGG+YLL+N NGS+YWR+KYR  GKEK+L++GVYP ++
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   LAQARGKRDEAKRGIAGGIDPNVARREEKIAREAQIKNTFQDIALEWHASKIKKWSAGYA  120
            LA+AR KR EA++ +A+G DP  A++EEKIA++  +KNTF+ IA EWH  K  +WS  Y 
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  121  SDIMEAFNKDVFPYIGNKPIAQIKPLELLNVLRRMESRGATEKAKKVRQRCGEVFRYAIV  180
             +I+++F+KD+FPYIG++PIA+IKP+ LL+ LR+ME RGA EK +KVRQRCGEVFRYAIV
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  181  TGRAEYNPAPDLTSAMQGHESSHYPFLNAQELPEFFHALSEYTGSKlvllaarllilTGV  240
            TGRA+YNPAPDL+SA+      H+PFL A+ELP+F++ L+ YTGS +   A+++++LTGV
Sbjct  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV  240

Query  241  RTGELRAANWQEIDTENARWEIPAERMKMRRPHCVPLSRQAIAILDEIREMTGRYPLVFP  300
            RT ELR A W++ID E   WEIPAE MKM+RPH VPLS Q I ++ ++  ++ + PLVF 
Sbjct  241  RTQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHPLVFI  300

Query  301  GRNDPRNTMSEASINQVFKRIGYAGRVTGHGFRHTMSTILHEQGYNTAWIETQLAHVDKN  360
            GRNDPR+ +S  SINQ +  +GY GR+TGHGFRHTMSTILHEQG+N+AWIE QLAHVDKN
Sbjct  301  GRNDPRKPISKESINQAIELLGYKGRLTGHGFRHTMSTILHEQGFNSAWIEMQLAHVDKN  360

Query  361  AIRGTYNHAQYLDGRREMLQWYADYMESLEN  391
            +IR+TYNHA YLDGRREM+QWYADY++SL +
Sbjct  361  SIRDTYNHALYLDGRREMMQWYADYIDSLSS  391

95) A3UG_04555 in NC_018079


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  444 bits (1671),  Expect = 5e-126, Method: Compositional matrix adjust.
 Identities = 249/394 (64%), Positives = 327/394 (83%), Gaps = 0/394 (0%)

Query  1    MKLNARQVDAAKPKDNPYKLADGGGLYLLIKPNGGKYWRLKYRVAGKEKLLALGVYPEVT  60
            M L   +V +AKPKD+PYKLADGGG+YLLI+ NG+KYWR+KYR AGKEK+L++GVYP+VT
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   LADarakreeakrGIAGGIDPMEAKREEKIAREIQLNNTFKDIALEWHSSKLKKWSAGYA  120
            LADAR KR EA++ +A+G DP EAK+EEKIA+++ L+NTF  IA EWH  K  +WS  Y 
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  121  SDILEAFNKDVFPYIGKKPIAEIKPLELLNVLRRIEGRGATEKARKVRQRCGEVFRYAIV  180
             +I+++F+KD+FPYIGK+PIAEIKP+ LL+ LR++E RGA EK RKVRQRCGEVFRYAIV
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  181  TGRAEYNPAPDLTSAMQGHESNHFPFLTPKELPDFFNALSGYSGSELVVLAARLLIITGL  240
            TGRA+YNPAPDL+SA+      HFPFLT++ELP+F+N L+GY+GS +   A++++++TG+
Sbjct  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV  240

Query  241  RPGELRGAFWDEINISKAVWEIPASRMKMRRPHVVPLSRQALTLIGQIQELTGNYPLVFP  300
            R  ELR A W++I++   +WEIPA  MKM+RPH+VPLS Q + L+ Q++ ++ + PLVF 
Sbjct  241  RTQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHPLVFI  300

Query  301  GRNDPRKTMSEASINQVFKRIGYNGKVTGHGFRHTMSTILHEQGYNTAWIETQLAHVDKN  360
            GRNDPRK +S  SINQ +  +GY+G++TGHGFRHTMSTILHEQG+N+AWIE QLAHVDKN
Sbjct  301  GRNDPRKPISKESINQAIELLGYKGRLTGHGFRHTMSTILHEQGFNSAWIEMQLAHVDKN  360

Query  361  SIRGTYNHAQYLDGRREMLQWYADYMEALENGEN  394
            SIR+TYNHA YLDGRREM+QWYADY+++L + E+
Sbjct  361  SIRDTYNHALYLDGRREMMQWYADYIDSLSSRES  394

96) ECO55CA74_01660 in NC_017656


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  442 bits (1665),  Expect = 1e-125, Method: Compositional matrix adjust.
 Identities = 236/386 (62%), Positives = 315/386 (82%), Gaps = 0/386 (0%)

Query  1    MPLNDMQIRRAKPEAKAYTLGDGLGLSLLIEPNGSKSWRFRYRYAGKPKMISLGVYPTIT  60
            M+L D++++ AKP  K+Y L+DG G+ LLI+ NGSK WR +YR+AGK KM+S+GVYP +T
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   LADARSRRDEARKLVAEGKNPSEVRKEQKLAMQTESENAFEKIAREWHQLKSAKWSAGYA  120
            LADAR +R EARKL+A G +P+E +KE+K+A Q    N+FE IAREWHQLK+ +WS  Y 
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  121  SDIMEAFKNDIFPYVGTRPVGEIKPLELLNVLRKIEKRGALEKMRKVRQRCSEVFRYAIA  180
             +I+++F +DIFPY+G RP++EIKP+ LL+ LRK+EKRGALEKMRKVRQRC+EVFRYAI 
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  181  TGRAEYNPAADLSSALEVHQSNHFPFLKADEIPDFLRALEGYSGSKLVQIATKLLMITGV  240
            TGRA+YNPA+DL+SAL   +  HFPFL A+E+P+FL  L GY+GS + + AT+++M+TGV
Sbjct  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV  240

Query  241  RTIELRAALWQEFDLDNAIWEIPAERMKMRRPHLVPLSSQAVDLLNELKIMTGNYRYVFP  300
            RT ELR A W+++D++  +WEIPAE MKM+RPH+VPLS Q + L+++L  ++ +   VF 
Sbjct  241  RTQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHPLVFI  300

Query  301  GRNDPNRPMSEASINQAIKRIGYGGKVTGHGFRHTLSTILHEQGFESAWIEIQLAHVDKN  360
            GRNDP +P+S  SINQAI  +GY G++TGHGFRHT+STILHEQGF+SAWIE+QLAHVDKN
Sbjct  301  GRNDPRKPISKESINQAIELLGYKGRLTGHGFRHTMSTILHEQGFNSAWIEMQLAHVDKN  360

Query  361  SIRGTYNHAQYFSGRKSMMDWYSNLI  386
            SIR+TYNHA Y+ GR+ MM+WY++ I
Sbjct  361  SIRDTYNHALYLDGRREMMQWYADYI  386

97) ETEC_0316 in NC_017633


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  441 bits (1662),  Expect = 2e-125, Method: Compositional matrix adjust.
 Identities = 250/389 (65%), Positives = 324/389 (84%), Gaps = 0/389 (0%)

Query  1    MKLNARQIDTAKPKEKAYKLADGGGLYLLVKPNGGKYWRLKYRVAGKEKLLALGVYPEVT  60
            M L   ++ TAKPK+K+YKLADGGG+YLL++ NG+KYWR+KYR AGKEK+L++GVYP+VT
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   LadarakredakrGIAGGIDPMEAKREEKIARETQLNNTFKDIALEWHSSKLKKWSAGYA  120
            LADAR KR +A++ +A+G DP EAK+EEKIA++  L+NTF  IA EWH  K  +WS  Y 
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  121  SDILEAFNKDVFPYIGKKPIAEIKPLELLNVLRRIEGRGATEKAKKVRQRCGEVFRYAIV  180
             +I+++F+KD+FPYIGK+PIAEIKP+ LL+ LR++E RGA EK +KVRQRCGEVFRYAIV
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  181  TGRAEYNPAPDLTSAMQGHESNHYPFLTAKELPDFFKALSSYSGSALVVMAARLLIITGL  240
            TGRA+YNPAPDL+SA+      H+PFLTA+ELP+F++ L++Y+GS +   A++++++TG+
Sbjct  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV  240

Query  241  RTGELRGALWDEIDFNKALWEIPASRMKMRRPHIVPLSEQALSLIGKIREITGNYPLMFP  300
            RT ELR A W++IDF+  LWEIPA  MKM+RPHIVPLSEQ + L+ ++  I+ + PL+F 
Sbjct  241  RTQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHPLVFI  300

Query  301  GRNDPRKTMSEASINQVFKRIGYAGRVTGHGFRHTMSTILHEQGYNTAWIETQLAHVDKN  360
            GRNDPRK +S  SINQ +  +GY GR+TGHGFRHTMSTILHEQG+N+AWIE QLAHVDKN
Sbjct  301  GRNDPRKPISKESINQAIELLGYKGRLTGHGFRHTMSTILHEQGFNSAWIEMQLAHVDKN  360

Query  361  SIRGTYNHAQYLDGRREMLQWYADYMDSL  389
            SIR+TYNHA YLDGRREM+QWYADY+DSL
Sbjct  361  SIRDTYNHALYLDGRREMMQWYADYIDSL  389

98) G2583_0351 in NC_013941


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  441 bits (1661),  Expect = 3e-125, Method: Compositional matrix adjust.
 Identities = 236/386 (62%), Positives = 315/386 (82%), Gaps = 0/386 (0%)

Query  18   MPLNDMQIRRAKPEAKAYTLGDGLGLSLLIEPNGSKSWRFRYRYAGKPKMISLGVYPTIT  77
            M+L D++++ AKP  K+Y L+DG G+ LLI+ NGSK WR +YR+AGK KM+S+GVYP +T
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  78   LADARSRRDEARKLVAEGKNPSEVRKEQKLAMQTESENAFEKIAREWHQLKSAKWSAGYA  137
            LADAR +R EARKL+A G +P+E +KE+K+A Q    N+FE IAREWHQLK+ +WS  Y 
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  138  SDIMEAFKNDIFPYVGTRPVGEIKPLELLNVLRKIEKRGALEKMRKVRQRCSEVFRYAIA  197
             +I+++F +DIFPY+G RP++EIKP+ LL+ LRK+EKRGALEKMRKVRQRC+EVFRYAI 
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  198  TGRAEYNPAADLSSALEVHQSNHFPFLKADEIPDFLRALEGYSGSKLVQIATKLLMITGV  257
            TGRA+YNPA+DL+SAL   +  HFPFL A+E+P+FL  L GY+GS + + AT+++M+TGV
Sbjct  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV  240

Query  258  RTIELRAALWQEFDLDNAIWEIPAERMKMRRPHLVPLSSQAVDLLNELKIMTGNYRYVFP  317
            RT ELR A W+++D++  +WEIPAE MKM+RPH+VPLS Q + L+++L  ++ +   VF 
Sbjct  241  RTQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHPLVFI  300

Query  318  GRNDPNRPMSEASINQAIKRIGYGGKVTGHGFRHTLSTILHEQGFESAWIEIQLAHVDKN  377
            GRNDP +P+S  SINQAI  +GY G++TGHGFRHT+STILHEQGF+SAWIE+QLAHVDKN
Sbjct  301  GRNDPRKPISKESINQAIELLGYKGRLTGHGFRHTMSTILHEQGFNSAWIEMQLAHVDKN  360

Query  378  SIRGTYNHAQYFSGRKSMMDWYSNLI  403
            SIR+TYNHA Y+ GR+ MM+WY++ I
Sbjct  361  SIRDTYNHALYLDGRREMMQWYADYI  386

99) EcSMS35_0299 in NC_010498


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  441 bits (1661),  Expect = 3e-125, Method: Compositional matrix adjust.
 Identities = 242/391 (62%), Positives = 318/391 (82%), Gaps = 0/391 (0%)

Query  1    MKLNARQVDAAKPREKAYKLADGAGLYLEVVPSGSRYWRMKYRFNGKEKRMAFGVYPAVS  60
            M L   +V +AKP++K+YKLADG+G+YL +  +GS+YWRMKYRF GKEK +++GVYP V+
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   LAQARALRDEAKKKLAEGIDPSFAKKEEKLVRDVQLNNTFQAVALEWHGTKVSRWSEGYA  120
            LA+AR  R EA+K LA G DP+ AKKEEK+ +++ L+NTF+A+A EWH  K  RWS  Y 
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  121  SDIIEAFNKDIFPYIGQLPVNDIKPLVLLNVLRRMESRGATEKAKKVRQRCSEVFRYAIV  180
             +II++F+KDIFPYIG+ P+ +IKP+ LL+ LR+ME RGA EK +KVRQRC+EVFRYAIV
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  181  TGRAEYNPAADLTSAMSGHESKHYPFLTVEELPDFFKALAGYTGSPLVVLAARLLILTGV  240
            TGRA+YNPA+DL+SA++     H+PFLT +ELP+F++ LAGYTGS +   A+++++LTGV
Sbjct  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV  240

Query  241  RTGELRGAFWSEFDLEKAVWEIPAERMKMKRPHLVPLSTQALEIVQQLKVISGQYPLVFP  300
            RT ELR A W ++D+E  +WEIPAE MKMKRPH+VPLS Q + + +QL  IS + PLVF 
Sbjct  241  RTQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHPLVFI  300

Query  301  GRNDPRKTMSEASMNQVFKRIGYTGKVTGHGFRHTMSTILHEEGFNTAWIETQLAHVDKN  360
            GRNDPRK +S  S+NQ +  +GY G++TGHGFRHTMSTILHE+GFN+AWIE QLAHVDKN
Sbjct  301  GRNDPRKPISKESINQAIELLGYKGRLTGHGFRHTMSTILHEQGFNSAWIEMQLAHVDKN  360

Query  361  AIRGTYNHALYLEGRREMMQWYADCIGRIGN  391
            +IR+TYNHALYL+GRREMMQWYAD I+ +++
Sbjct  361  SIRDTYNHALYLDGRREMMQWYADYIDSLSS  391

100) ECSE_0264 in NC_011415


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  440 bits (1658),  Expect = 4e-125, Method: Compositional matrix adjust.
 Identities = 243/389 (63%), Positives = 314/389 (81%), Gaps = 0/389 (0%)

Query  1    MKLNARQVDAAKPREKAYKLADGAGLYLEVVPSGSRYWRMKYRFNGKEKRMAFGVYPAVS  60
            M L   +V +AKP++K+YKLADG+G+YL +  +GS+YWRMKYRF GKEK +++GVYP V+
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   LAQARALRDEAKKKLAEGIDPSFAKKEEKLVRDVQLNNTFQSVALEWHGTKVSRWSEGYA  120
            LA+AR  R EA+K LA G DP+ AKKEEK+ +++ L+NTF+++A EWH  K  RWS  Y 
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  121  SDIIEAFNKDIFPYIGQLPVNEIKPLVLLNVLRRIESRGATEKAKKVRQRCSEVFRYAIV  180
             +II++F+KDIFPYIG+ P+ EIKP+ LL+ LR++E RGA EK +KVRQRC+EVFRYAIV
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  181  TGRAEYNPAADLTSAMSGHESKHYPFLTVVELPDFFKALSGYTGSPLVVLAARLLILTGV  240
            TGRA+YNPA+DL+SA++     H+PFLT  ELP+F++ L+GYTGS +   A+++++LTGV
Sbjct  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV  240

Query  241  RTGELRGACWSEFDFEKAVWEIPAERMKMKRPHLVPLSTQALEIAQQLKVMSGQYPLVFP  300
            RT ELR A W ++DFE  +WEIPAE MKMKRPH+VPLS Q + + +QL  +S + PLVF 
Sbjct  241  RTQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHPLVFI  300

Query  301  GRNDPRKTMSEASINQVFKRIGYTGKVTGHGFRHTMSTILHEEGFNTAWIETQLAHVDKN  360
            GRNDPRK +S  SINQ +  +GY G++TGHGFRHTMSTILHE+GFN+AWIE QLAHVDKN
Sbjct  301  GRNDPRKPISKESINQAIELLGYKGRLTGHGFRHTMSTILHEQGFNSAWIEMQLAHVDKN  360

Query  361  AIRGTYNHAQYLDGRLEMMQWYADYIDKL  389
            +IR+TYNHA YLDGR EMMQWYADYID L
Sbjct  361  SIRDTYNHALYLDGRREMMQWYADYIDSL  389

101) ECs0289 in NC_002695


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  440 bits (1658),  Expect = 4e-125, Method: Compositional matrix adjust.
 Identities = 235/386 (61%), Positives = 315/386 (82%), Gaps = 0/386 (0%)

Query  1    MPLNDMQIRRAKPEAKAYTFGDGLGLSLLIEPNGSKSWRFRYRYAGKPKMISLGVYPTIT  60
            M+L D++++ AKP  K+Y ++DG G+ LLI+ NGSK WR +YR+AGK KM+S+GVYP +T
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   LADARSRRDEARKLVAEGKNPSEVRKEQKLAMQTESENAFEKIAREWHQLKSAKWSAGYA  120
            LADAR +R EARKL+A G +P+E +KE+K+A Q    N+FE IAREWHQLK+ +WS  Y 
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  121  SDIMEAFKNDIFPYVGTRPVGEIKPLELLNVLRKIEKRGALEKMRKVRQRCSEVFRYAIA  180
             +I+++F +DIFPY+G RP++EIKP+ LL+ LRK+EKRGALEKMRKVRQRC+EVFRYAI 
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  181  TGRAEYNPAADLSSALEVHQSNHFPFLKADEIPDFLRALEGYSGSKLVQIATKLLMITGV  240
            TGRA+YNPA+DL+SAL   +  HFPFL A+E+P+FL  L GY+GS + + AT+++M+TGV
Sbjct  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV  240

Query  241  RTIELRAALWQEFDLDNAIWEIPAERMKMRRPHLVPLSSQAVDLLNELKIMTGNYRYVFP  300
            RT ELR A W+++D++  +WEIPAE MKM+RPH+VPLS Q + L+++L  ++ +   VF 
Sbjct  241  RTQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHPLVFI  300

Query  301  GRNDPNRPMSEASINQAIKRIGYGGKVTGHGFRHTLSTILHEQGFESAWIEIQLAHVDKN  360
            GRNDP +P+S  SINQAI  +GY G++TGHGFRHT+STILHEQGF+SAWIE+QLAHVDKN
Sbjct  301  GRNDPRKPISKESINQAIELLGYKGRLTGHGFRHTMSTILHEQGFNSAWIEMQLAHVDKN  360

Query  361  SIRGTYNHAQYFSGRKSMMDWYSNLI  386
            SIR+TYNHA Y+ GR+ MM+WY++ I
Sbjct  361  SIRDTYNHALYLDGRREMMQWYADYI  386

102) ECABU_c03450 in NC_017631


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  440 bits (1658),  Expect = 5e-125, Method: Compositional matrix adjust.
 Identities = 248/389 (64%), Positives = 324/389 (84%), Gaps = 0/389 (0%)

Query  1    MKLNARQIDTAKPKEKAYKLADGGGLYLLVKPNGGKYWRLKYRVAGKEKLLALGVYPEVT  60
            M L   ++ TAKPK+K+YKLADGGG+YLL++ NG+KYWR+KYR AGKEK+L++GVYP+VT
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   LadarakredakrGIAGGIDPMEAKREEKIARETQLNNTFKDIALEWHSSKLKKWSAGYA  120
            LADAR KR +A++ +A+G DP EAK+EEKIA++  L+NTF  IA EWH  K  +WS  Y 
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  121  SDILEAFNKDVFPYIGKKPIAEIKPLELLNVLRRIEGRGATEKAKKVRQRCGEVFRYAIV  180
             +I+++F+KD+FPYIGK+PIAEIKP+ LL+ LR++E RGA EK +KVRQRCGEVFRYAIV
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  181  TGRAEYNPAPDLTSAMQGHESNHYPFLTTKELPDFFKALSSYSGSALVVMAARLLIITGL  240
            TGRA+YNPAPDL+SA+      H+PFLT++ELP+F++ L++Y+GS +   A++++++TG+
Sbjct  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV  240

Query  241  RTGELRGALWDEIDFNKAIWEIPASRMKMRRPHIVPLSEQALSLIGKIREITGNYPLMFP  300
            RT ELR A W++IDF+  +WEIPA  MKM+RPHIVPLSEQ + L+ ++  I+ + PL+F 
Sbjct  241  RTQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHPLVFI  300

Query  301  GRNDPRKTMSEASINQVFKRIGYAGRVTGHGFRHTMSTILHEQGYNTAWIETQLAHVDKN  360
            GRNDPRK +S  SINQ +  +GY GR+TGHGFRHTMSTILHEQG+N+AWIE QLAHVDKN
Sbjct  301  GRNDPRKPISKESINQAIELLGYKGRLTGHGFRHTMSTILHEQGFNSAWIEMQLAHVDKN  360

Query  361  SIRGTYNHAQYLDGRREMLQWYADYMDSL  389
            SIR+TYNHA YLDGRREM+QWYADY+DSL
Sbjct  361  SIRDTYNHALYLDGRREMMQWYADYIDSL  389

103) PAGR_g2495 in NC_017554


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  439 bits (1654),  Expect = 1e-124, Method: Compositional matrix adjust.
 Identities = 240/389 (62%), Positives = 312/389 (81%), Gaps = 0/389 (0%)

Query  1    MQLNARQVETAKPKDKPYKLADGGGMYLEVFPNGTKSWRMKYRIAGKEKCVVFGVYPTIT  60
            M L   +V TAKPKDKPYKLADGGGMYL +  NG+K WRMKYR+AGKEK + +GVYP +T
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   LADARSKRDDAKKLLVNGVDPSAFKQESKQAHIEEVKNTFQQIALEWHNMKVKKWSAGYA  120
            LADAR KR +A+KLL  G DP+  K+E K A+   +KNTF+ IA EWH++K  +WS  Y 
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  121  SDILEAFNKDVFPFIGQRPVADIKPLELLNVLKKMEDRGATEKAKKVRQRCGEVFRYAIV  180
             +I+++F+KD+FP+IG+RP+A+IKP+ LL+ L+KME RGA EK +KVRQRCGEVFRYAIV
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  181  TGRAEYNPAPDLTSAMQGHESTHYPFLTTEELPAFFKALAGYSGSELMVLAARLLIITGL  240
            TGRA+YNPAPDL+SA+      H+PFLT++ELP F++ LAGY+GS +   A++++++TG+
Sbjct  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV  240

Query  241  RTGELRGALWSEIDTKKALWEISAERMKMRRPHIIPLSTQALAIIEQIRAMTGQFPLLFP  300
            RT ELR A W +ID    LWEI+AE MKM+RPHI+PLS Q + ++ Q+ +++ + PL+F 
Sbjct  241  RTQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHPLVFI  300

Query  301  GRNDPSKTMSEASINQVFKRIGYTGRVTGHGFRHTMSTVLHEQGYNTAWIETQLAHVDKN  360
            GRNDP K +S  SINQ +  +GY GR+TGHGFRHTMST+LHEQG+N+AWIE QLAHVDKN
Sbjct  301  GRNDPRKPISKESINQAIELLGYKGRLTGHGFRHTMSTILHEQGFNSAWIEMQLAHVDKN  360

Query  361  AIRGTYNHAQYLDGRREMLQWYADYMASL  389
            +IR+TYNHA YLDGRREM+QWYADY+ SL
Sbjct  361  SIRDTYNHALYLDGRREMMQWYADYIDSL  389

104) Z0324 in NC_002655


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  439 bits (1654),  Expect = 1e-124, Method: Compositional matrix adjust.
 Identities = 235/386 (61%), Positives = 315/386 (82%), Gaps = 0/386 (0%)

Query  18   MPLNDMQIRRAKPEAKAYTFGDGLGLSLLIEPNGSKSWRFRYRYAGKPKMISLGVYPTIT  77
            M+L D++++ AKP  K+Y ++DG G+ LLI+ NGSK WR +YR+AGK KM+S+GVYP +T
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  78   LADARSRRDEARKLVAEGKNPSEVRKEQKLAMQTESENAFEKIAREWHQLKSAKWSAGYA  137
            LADAR +R EARKL+A G +P+E +KE+K+A Q    N+FE IAREWHQLK+ +WS  Y 
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  138  SDIMEAFKNDIFPYVGTRPVGEIKPLELLNVLRKIEKRGALEKMRKVRQRCSEVFRYAIA  197
             +I+++F +DIFPY+G RP++EIKP+ LL+ LRK+EKRGALEKMRKVRQRC+EVFRYAI 
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  198  TGRAEYNPAADLSSALEVHQSNHFPFLKADEIPDFLRALEGYSGSKLVQIATKLLMITGV  257
            TGRA+YNPA+DL+SAL   +  HFPFL A+E+P+FL  L GY+GS + + AT+++M+TGV
Sbjct  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV  240

Query  258  RTIELRAALWQEFDLDNAIWEIPAERMKMRRPHLVPLSSQAVDLLNELKIMTGNYRYVFP  317
            RT ELR A W+++D++  +WEIPAE MKM+RPH+VPLS Q + L+++L  ++ +   VF 
Sbjct  241  RTQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHPLVFI  300

Query  318  GRNDPNRPMSEASINQAIKRIGYGGKVTGHGFRHTLSTILHEQGFESAWIEIQLAHVDKN  377
            GRNDP +P+S  SINQAI  +GY G++TGHGFRHT+STILHEQGF+SAWIE+QLAHVDKN
Sbjct  301  GRNDPRKPISKESINQAIELLGYKGRLTGHGFRHTMSTILHEQGFNSAWIEMQLAHVDKN  360

Query  378  SIRGTYNHAQYFSGRKSMMDWYSNLI  403
            SIR+TYNHA Y+ GR+ MM+WY++ I
Sbjct  361  SIRDTYNHALYLDGRREMMQWYADYI  386

105) int in NC_011745


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  439 bits (1655),  Expect = 9e-125, Method: Compositional matrix adjust.
 Identities = 240/389 (62%), Positives = 311/389 (80%), Gaps = 0/389 (0%)

Query  14   MLLSDLAIRRAKPKEKAYTLNDGNGLSLLIEPNGSKGWRLRYRFAGKPKMLSLGVYPEVS  73
            M L+D+ ++ AKPK+K+Y L DG G+ LLI+ NGSK WR++YRFAGK KMLS+GVYP+V+
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  74   LSDARTARDEAKRLIAGGVNPSEVRKAQKREQANKCGNTFEVIAREWYEKRLDRWSPSYA  133
            L+DAR  R EA++L+A+G +P+E +K +K  Q     NTFE IAREW + + DRWS  Y 
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  134  EEMIETFEKDVFPYIGGRPIAEIKPMELLAVLSRLNDRGATEKLRKVRQRCGEVFRYAII  193
            +E+I+TFEKD+FPYIG RPIAEIKPM LL  L +++ RGA EK+RKVRQRCGEVFRYAI+
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  194  TGRAEYNPAPDLASAFAPHKKEHYAYLKVDELPEFFRVFNTYTGSQIVKLGMRLLILTGL  253
            TGRA+YNPAPDLASA+A  KK H+++L  +ELP+F+  +  YTGS I K + ++++LTG+
Sbjct  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV  240

Query  254  RPGELRQAEWQEIDFDNRLWEVPKERMKMRRPHCVPLSEQAIAILEQLKHMTGQYPFIFP  313
            R  ELR A W++IDF+ +LWE+P E MKM+RPH VPLSEQ I ++ QL  ++ + P++F 
Sbjct  241  RTQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHPLVFI  300

Query  314  GRIQHSKPMSEMAMNVLIRRIGYAGRVTGHGFRHTMSTILHEQGYNSAWIETQLAHVDKN  373
            GR +  KP+S  ++N  I  +GY GR+TGHGFRHTMSTILHEQG+NSAWIE QLAHVDKN
Sbjct  301  GRNDPRKPISKESINQAIELLGYKGRLTGHGFRHTMSTILHEQGFNSAWIEMQLAHVDKN  360

Query  374  SIRGTYNHAQYLDGRREMLQWYADYMDSL  402
            SIR+TYNHA YLDGRREM+QWYADY+DSL
Sbjct  361  SIRDTYNHALYLDGRREMMQWYADYIDSL  389

106) Dd586_2842 in NC_013592


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  438 bits (1651),  Expect = 2e-124, Method: Compositional matrix adjust.
 Identities = 232/391 (60%), Positives = 321/391 (83%), Gaps = 0/391 (0%)

Query  1    MALTDVKVRSAKPMDKPYKLTDGEGMHLMVHPNGSKYWRLQYRFDGKQKMLALGVYPEIS  60
            MALTD+KV++AKP DKPYKL+DG GM L+++ NGSKYWR++YRF GK+KML++GVYP+++
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   LSEARQRRDEAKRQVTNSIDPSEKKKVEKQARKVAVENTFKSVALEWHEYKRPNWSKGYA  120
            L++AR++R EA++ ++ + DP+E KK EK A+++++ NTF ++A EWH+ K   WS  Y 
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  121  EDLMEAFENDIFPDIGKRPIAEIEPLEALTTLRKLEKRGVLDKLRKVRQACKQVCTYAIV  180
            ++++++FE+DIFP IGKRPIAEI P+  L +LRK+EKRG L+K+RKVRQ C +V  YAIV
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  181  TGRAKTNPFAELASALTTAKSTHYPHLLADQLPAFLKALEAYSGSPITRLATRILMLTGV  240
            TGRA  NP ++LASAL+T+K  H+P L A++LP FL+ L +Y+GS IT+ AT+I+MLTGV
Sbjct  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV  240

Query  241  RTIELRLAEWKEFDFDKRVWEVPVERMKMRRPHLVPLSDQVIEALRELQMITGRYNLVFP  300
            RT ELR+A W ++DF+ ++WE+P E MKM+RPH+VPLS+QVI  +++L+ I+ +  LVF 
Sbjct  241  RTQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHPLVFI  300

Query  301  GRNDITKPISEASINQVLKRIGYHGKATGHGFRHTMSTILHEEGFNTAWIELQLAHVDKN  360
            GRND  KPIS  SINQ +  +GY G+ TGHGFRHTMSTILHE+GFN+AWIE+QLAHVDKN
Sbjct  301  GRNDPRKPISKESINQAIELLGYKGRLTGHGFRHTMSTILHEQGFNSAWIEMQLAHVDKN  360

Query  361  TIRGTYNHAQHLENRRGMLQWYADYLESLTN  391
            +IR+TYNHA  L+ RR M+QWYADY++SL++
Sbjct  361  SIRDTYNHALYLDGRREMMQWYADYIDSLSS  391

107) ETAF_0751 in NC_017309


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  438 bits (1648),  Expect = 3e-124, Method: Compositional matrix adjust.
 Identities = 238/390 (62%), Positives = 317/390 (82%), Gaps = 0/390 (0%)

Query  1    MKLNARQVDAAKPREKAYKLADGAGLYLEVVPSGSRYWRMKYRFNGKEKRMAFGVYPAVS  60
            M L   +V +AKP++K+YKLADG+G+YL +  +GS+YWRMKYRF GKEK +++GVYP V+
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   LAQARALRDEAKKKLAEGIDPSFAKKEEKLVRDVQLNNTFQSVALEWHGTKVSRWSEGYT  120
            LA+AR  R EA+K LA G DP+ AKKEEK+ +++ L+NTF+++A EWH  K  RWS  Y 
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  121  SDILEAFNKDIFPYIGQQPVNEIKPLVLLHVLRRMESRGATEKAKKVRQRCSEVFRYAIV  180
             +I+++F+KDIFPYIG++P+ EIKP+ LL+ LR+ME RGA EK +KVRQRC+EVFRYAIV
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  181  TGRAEYNPAADLTSAMSGHESKHYPFLTVEKLPDFFKALSSYTGSPLVVLAARLLILTGV  240
            TGRA+YNPA+DL+SA++     H+PFLT + LP+F++ L++YTGS +   A+++++LTGV
Sbjct  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV  240

Query  241  RTGELRGAFWSEFDLEKAVWEIPAERMKMKRPHLVPLSTQALEIVQQLKVMSGQYPQVFP  300
            RT ELR A W ++D+E  +WEIPAE MKMKRPH+VPLS Q + + +QL  +S + P VF 
Sbjct  241  RTQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHPLVFI  300

Query  301  GRNDPRKTMSEASINQVFKRIGYTGKVTGHGFRHTMSTILHEEGFNTAWIETQLAHVDKN  360
            GRNDPRK +S  SINQ +  +GY G++TGHGFRHTMSTILHE+GFN+AWIE QLAHVDKN
Sbjct  301  GRNDPRKPISKESINQAIELLGYKGRLTGHGFRHTMSTILHEQGFNSAWIEMQLAHVDKN  360

Query  361  AIRGTYNHAQYLEGRREMMQWYADYIDNIG  390
            +IR+TYNHA YL+GRREMMQWYADYID+++
Sbjct  361  SIRDTYNHALYLDGRREMMQWYADYIDSLS  390

108) EC55989_0268 in NC_011748


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  437 bits (1647),  Expect = 4e-124, Method: Compositional matrix adjust.
 Identities = 245/389 (63%), Positives = 323/389 (84%), Gaps = 0/389 (0%)

Query  1    MKLNARQIDTAKPKEKAYKLADGGGLYLLVKPSGGKYWRFKYRVAGKEKLLALGVYPEVT  60
            M L   ++ TAKPK+K+YKLADGGG+YLL++ +G+KYWR KYR AGKEK+L++GVYP+VT
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   LADarakreeakrGIAGGIDPMEAKREEKIARETQLNNTFKDIALEWHSSKLKKWSAGYA  120
            LADAR KR EA++ +A+G DP EAK+EEKIA++  L+NTF  IA EWH  K  +WS  Y 
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  121  SDILEAFNKDVFPYIGKKPIAEIKPLELLNVLRRIEGRGATEKAKKVRQRCGEVFRYAIV  180
             +I+++F+KD+FPYIGK+PIAEIKP+ LL+ LR++E RGA EK +KVRQRCGEVFRYAIV
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  181  TGRAEYNPAPDLTSAMQGHESNHYPFLTAKELPDFFKALSSYSGSALVVMAARLLIITGL  240
            TGRA+YNPAPDL+SA+      H+PFLTA+ELP+F++ L++Y+GS +   A++++++TG+
Sbjct  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV  240

Query  241  RTGELRGALWDEIDLNKAIWEIPASRMKMRRPHVVPLSKQALSLIGQIKELTGNYPLMFP  300
            RT ELR A W++ID++  +WEIPA  MKM+RPH+VPLS Q + L+ Q+  ++ + PL+F 
Sbjct  241  RTQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHPLVFI  300

Query  301  GRNDPRKTMSEASINQVFKRIGYNGKVTGHGFRHTMSTILHEQGYNTAWIETQLAHVDKN  360
            GRNDPRK +S  SINQ +  +GY+G++TGHGFRHTMSTILHEQG+N+AWIE QLAHVDKN
Sbjct  301  GRNDPRKPISKESINQAIELLGYKGRLTGHGFRHTMSTILHEQGFNSAWIEMQLAHVDKN  360

Query  361  SIRGTYNHAQYLDGRREMLQWYADYMDSL  389
            SIR+TYNHA YLDGRREM+QWYADY+DSL
Sbjct  361  SIRDTYNHALYLDGRREMMQWYADYIDSL  389

109) O3K_20180 in NC_018658


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  437 bits (1647),  Expect = 4e-124, Method: Compositional matrix adjust.
 Identities = 245/389 (63%), Positives = 323/389 (84%), Gaps = 0/389 (0%)

Query  1    MKLNARQIDTAKPKEKAYKLADGGGLYLLVKPSGGKYWRFKYRVAGKEKLLALGVYPEVT  60
            M L   ++ TAKPK+K+YKLADGGG+YLL++ +G+KYWR KYR AGKEK+L++GVYP+VT
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   LADarakreeakrGIAGGIDPMEAKREEKIARETQLNNTFKDIALEWHSSKLKKWSAGYA  120
            LADAR KR EA++ +A+G DP EAK+EEKIA++  L+NTF  IA EWH  K  +WS  Y 
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  121  SDILEAFNKDVFPYIGKKPIAEIKPLELLNVLRRIEGRGATEKAKKVRQRCGEVFRYAIV  180
             +I+++F+KD+FPYIGK+PIAEIKP+ LL+ LR++E RGA EK +KVRQRCGEVFRYAIV
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  181  TGRAEYNPAPDLTSAMQGHESNHYPFLTAKELPDFFKALSSYSGSALVVMAARLLIITGL  240
            TGRA+YNPAPDL+SA+      H+PFLTA+ELP+F++ L++Y+GS +   A++++++TG+
Sbjct  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV  240

Query  241  RTGELRGALWDEIDLNKAIWEIPASRMKMRRPHVVPLSKQALSLIGQIKELTGNYPLMFP  300
            RT ELR A W++ID++  +WEIPA  MKM+RPH+VPLS Q + L+ Q+  ++ + PL+F 
Sbjct  241  RTQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHPLVFI  300

Query  301  GRNDPRKTMSEASINQVFKRIGYNGKVTGHGFRHTMSTILHEQGYNTAWIETQLAHVDKN  360
            GRNDPRK +S  SINQ +  +GY+G++TGHGFRHTMSTILHEQG+N+AWIE QLAHVDKN
Sbjct  301  GRNDPRKPISKESINQAIELLGYKGRLTGHGFRHTMSTILHEQGFNSAWIEMQLAHVDKN  360

Query  361  SIRGTYNHAQYLDGRREMLQWYADYMDSL  389
            SIR+TYNHA YLDGRREM+QWYADY+DSL
Sbjct  361  SIRDTYNHALYLDGRREMMQWYADYIDSL  389

110) SMWW4_v1c08950 in NC_020211


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  437 bits (1647),  Expect = 4e-124, Method: Compositional matrix adjust.
 Identities = 233/386 (61%), Positives = 310/386 (81%), Gaps = 0/386 (0%)

Query  1    MPLNDMQIRRAKPEAKAYTLGDGQGLSLLIEPNGSKSWRFRYRYAGKPKMISLGVYPTIT  60
            M+L D++++ AKP  K+Y L+DG G+ LLI+ NGSK WR +YR+AGK KM+S+GVYP +T
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   LADARSRRDEARKLVVEGKNPSEVRKEQKLALQTESENAFEKIAREWHQLKSAKWSAGYA  120
            LADAR +R EARKL+  G +P+E +KE+K+A Q    N+FE IAREWHQLK+ +WS  Y 
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  121  SDIMEAFKNDIFPYVGARPVGEIKPLELLNVLRKIEKRGALEKMRKVRQRCSEVFRYAIA  180
             +I+++F +DIFPY+G RP++EIKP+ LL+ LRK+EKRGALEKMRKVRQRC+EVFRYAI 
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  181  TGRAEFNPAADLSSALEVHQSNHFPFLKANEIPDFLRALESYTGSRVVQIATKLLMITGV  240
            TGRA++NPA+DL+SAL   +  HFPFL ANE+P+FL  L +YTGS + + AT+++M+TGV
Sbjct  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV  240

Query  241  RTIELRAASWSEFDLDNAIWEIPAERMKMRRPHLVPLSTQALHLLNELVVMTGNYRYVFP  300
            RT ELR A W ++D++  +WEIPAE MKM+RPH+VPLS Q + L+++L  ++ +   VF 
Sbjct  241  RTQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHPLVFI  300

Query  301  GRNDPNKPMSEASINQVIKRIGYGGRVTGHGFRHSLSTILHEQGYESAWIETQLAHVDKN  360
            GRNDP KP+S  SINQ I  +GY GR+TGHGFRH++STILHEQG++SAWIE QLAHVDKN
Sbjct  301  GRNDPRKPISKESINQAIELLGYKGRLTGHGFRHTMSTILHEQGFNSAWIEMQLAHVDKN  360

Query  361  SIRGAYNHAQYISQRGLMLQWYSDFI  386
            SIR++YNHA Y+  R  M+QWY+D+I
Sbjct  361  SIRDTYNHALYLDGRREMMQWYADYI  386

111) int in NC_010694


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  437 bits (1646),  Expect = 4e-124, Method: Compositional matrix adjust.
 Identities = 236/394 (60%), Positives = 316/394 (81%), Gaps = 0/394 (0%)

Query  1    MKLNARQVDTARGKDKPYKLADGGGLYLLVNPNGARYWRLKYRAAGKEKLLAVGVYPDVS  60
            M L   +V TA+ KDKPYKLADGGG+YLL+N NG++YWR+KYR AGKEK+L++GVYPDV+
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   LSDARRRRDEAKKILAAGGDPGQEKQAEKQSKILAVQNSFEAIALEWHEHKKTNWSEGYA  120
            L+DAR +R EA+K+LAAGGDPG+ K+ EK ++ ++++N+FEAIA EWH+ K   WS  Y 
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  121  TDILEYLSKDIFPFVGKRAINEIKPAEMLAVLRKMEQRGVLDKLKKTRQACRQIFTHAVI  180
             +I++ + KDIFP++GKR+I EIKP  +L  LRKME+RG L+K++K RQ C ++F  A++
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  181  TGRAENNPVTDLAGALKAPKQKHFPHLNVDQIPPFLNDLSNYSGSMITRYATQLLMITGL  240
            TGRA+ NP  DLA+AL +PK+ HFP L  +++P FLNDL+ Y+GS+IT+ ATQ++M+TG+
Sbjct  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV  240

Query  241  RTIELRASEWSDIDFDKGIWQIPAERMKMRRPHIVPISSQAKSLLEAIHQLTGRGKYVFP  300
            RT ELR + W DIDF+  +W+IPAE MKM+RPHIVP+S Q   L+  ++ ++ +   VF 
Sbjct  241  RTQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHPLVFI  300

Query  301  GRNDAGKPMSEASINQVIKRIGYDGKATGHGFRHTMSTILHEQGYNSAWVETQLAHVDKN  360
            GRND+ KP+S  SINQ I  +GY G+ TGHGFRHTMSTILHEQG+NSAW+E QLAHVDKN
Sbjct  301  GRNDPRKPISKESINQAIELLGYKGRLTGHGFRHTMSTILHEQGFNSAWIEMQLAHVDKN  360

Query  361  SIRGTYNHAQYLDGRREMLQWYADYMDALESGDN  394
            SIR+TYNHA YLDGRREM+QWYADY+D+L S ++
Sbjct  361  SIRDTYNHALYLDGRREMMQWYADYIDSLSSRES  394

112) KPK_4426 in NC_011283


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  435 bits (1637),  Expect = 2e-123, Method: Compositional matrix adjust.
 Identities = 241/391 (62%), Positives = 313/391 (81%), Gaps = 0/391 (0%)

Query  1    MKLNARQVETAKPKDKPYKLADGGGMYLEVFPNGTKSWRMKYRIAGKEKRVVFGVYPTIT  60
            M L   +V TAKPKDKPYKLADGGGMYL +  NG+K WRMKYR+AGKEK + +GVYP +T
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   LADARSKRDDAKKLLVNGVDPSAFKKESKLAQIEEVKNTFQQIALEWHNMKVKKWSAGYA  120
            LADAR KR +A+KLL  G DP+  KKE K+AQ   +KNTF+ IA EWH++K  +WS  Y 
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  121  SDILEAFNKDVFPFIGQRPVADIKPLELLNVLKKMEERGATEKAKKVRQRCGEVFRYAIV  180
             +I+++F+KD+FP+IG+RP+A+IKP+ LL+ L+KME RGA EK +KVRQRCGEVFRYAIV
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  181  TGRAEYNPAPDLTSAMQGHESKHYPFLTIEELPAFFKALAGYSGSELVVLAARLMIITGV  240
            TGRA+YNPAPDL+SA+      H+PFLT +ELP F++ LAGY+GS +   A++++++TGV
Sbjct  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV  240

Query  241  RTGELRGALWSEIYTDKGLWEISAERMKMRRPHIVPLSVQALEIIEKIRAMTGNFHLMFP  300
            RT ELR A W +I  +  LWEI+AE MKM+RPHIVPLS Q + ++ ++ +++ +  L+F 
Sbjct  241  RTQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHPLVFI  300

Query  301  GRNDPSKTMSEASINQVFKRIGYTGRVTGHGFRHTMSTVLHEQGYNTAWIETQLAHLDKN  360
            GRNDP K +S  SINQ +  +GY GR+TGHGFRHTMST+LHEQG+N+AWIE QLAH+DKN
Sbjct  301  GRNDPRKPISKESINQAIELLGYKGRLTGHGFRHTMSTILHEQGFNSAWIEMQLAHVDKN  360

Query  361  AIRGTYNHAQYLDGRREMLQWYADYMDSLEN  391
            +IR+TYNHA YLDGRREM+QWYADY+DSL +
Sbjct  361  SIRDTYNHALYLDGRREMMQWYADYIDSLSS  391

113) ECENHK_04640 in NC_018405


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  434 bits (1635),  Expect = 3e-123, Method: Compositional matrix adjust.
 Identities = 234/386 (61%), Positives = 311/386 (81%), Gaps = 0/386 (0%)

Query  1    MPLNDMLIRRAKPEDKPYTLGDGQGLSLLIEPNGSKSWRFRYRYAGKPKMISLGVYPTIT  60
            M+L D+ ++ AKP DKPY L+DG G+ LLI+ NGSK WR +YR+AGK KM+S+GVYP +T
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   LAEARSRRDEARKLVAEGKNPSEVRKEQKRALQTESENAFEKIAREWHQLKSAKWSAGYA  120
            LA+AR +R EARKL+A G +P+E +KE+K A Q    N+FE IAREWHQLK+ +WS  Y 
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  121  SDIMEAFKNDIFPYVGTRPVGEIKPLELLNVLRKIEKRGALEKMRKVRQRCSEVFRYAIA  180
             +I+++F +DIFPY+G RP++EIKP+ LL+ LRK+EKRGALEKMRKVRQRC+EVFRYAI 
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  181  TGRADYNPAADLSSALEVHQSNHFPFLKADEIPEFLRALEGYTGSKLVQIATKLLMITGV  240
            TGRADYNPA+DL+SAL   +  HFPFL A+E+P+FL  L GYTGS + + AT+++M+TGV
Sbjct  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV  240

Query  241  RTIELRAALWQEFDLDNAIWEIPAERMKMRRSHLVPLSTQALDLLNELKTMTGNYRYVFP  300
            RT ELR A W+++D++  +WEIPAE MKM+R+H+VPLS Q + L+++L  ++ +   VF 
Sbjct  241  RTQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHPLVFI  300

Query  301  GRNDPNKPMSEASINQVIKRIGYGGKVTGHGFRHTLSTVLHEKGYDSVWIETQLAHVDKN  360
            GRNDP KP+S  SINQ I  +GY G++TGHGFRHT+ST+LHE+G++S WIE QLAHVDKN
Sbjct  301  GRNDPRKPISKESINQAIELLGYKGRLTGHGFRHTMSTILHEQGFNSAWIEMQLAHVDKN  360

Query  361  TIRGTYNHAQYIDNRKCMLQSYADFI  386
            +IR+TYNHA Y+D R+ M+Q YAD+I
Sbjct  361  SIRDTYNHALYLDGRREMMQWYADYI  386

114) Spro_3887 in NC_009832


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  434 bits (1635),  Expect = 3e-123, Method: Compositional matrix adjust.
 Identities = 236/389 (61%), Positives = 314/389 (81%), Gaps = 0/389 (0%)

Query  1    MPLTDLELRRSKPQDKPYTLSDGGGLSILIEPNGSKGWRFRYRFDGKPKMLSLGTYPTVS  60
            M+LTD+ ++ +KP+DKPY L+DGGG+ +LI+ NGSK WR +YRF GK KMLS+G YP V+
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   LTDARQKRDEAKKLVVSGINPSEARKQQKRDRQDVTGNTFEGIAREWYEKRRDRWSESYA  120
            L+DAR+KR EA+KL+ +G +P+EA+K++K  +Q    NTFE+IAREW + + DRWS  Y 
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  121  EEMMKTFESDVFPYIGNRPIAEIKPMELMGTLSKLDERGATEKLRKVRQRCGEVWKYAIV  180
            +E++ TFE D+FPYIG+RPIAEIKPM L+ +L K++ RGA EK+RKVRQRCGEV +YAIV
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  181  TGRAEYNPAPDLASAFSPHKKEHYAFLSVAELPEFFRIFNTYTGSLIVKLAMRLLIITGT  240
            TGRA+YNPAPDLASA++  KK H++FL+  ELP+F+  +  YTGS+I K A +++++TG 
Sbjct  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV  240

Query  241  RPGELRKAEWSEFDFDNRLWEVPPERMKKRRPHCVPLSDQAISILEQLKPLTGHYSFVFP  300
            R  ELR A W ++DF+ +LWE+P+E MK +RPH VPLS+Q I ++ QL P++ H ++VF 
Sbjct  241  RTQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHPLVFI  300

Query  301  GRIHHSKPISEMAMNVLVRRIGYAGRVTGHGFRHTMSTILHEQGYNTAWIETQLAHVDKN  360
            GR +  KPIS  ++N  +  +GY GR+TGHGFRHTMSTILHEQG+N+AWIE QLAHVDKN
Sbjct  301  GRNDPRKPISKESINQAIELLGYKGRLTGHGFRHTMSTILHEQGFNSAWIEMQLAHVDKN  360

Query  361  SIRGTYNHAQYLDGRREMLQWYADYMDSL  389
            SIR+TYNHA YLDGRREM+QWYADY+DSL
Sbjct  361  SIRDTYNHALYLDGRREMMQWYADYIDSL  389

115) SerAS12_4096 in NC_015566


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  434 bits (1633),  Expect = 5e-123, Method: Compositional matrix adjust.
 Identities = 237/394 (61%), Positives = 314/394 (80%), Gaps = 0/394 (0%)

Query  1    MPLTDLELRRSKPQDKPYTLSDGGGLSILIEPNGSKGWRFRYRFDGKPKMLSLGTYPTVS  60
            M+LTD+ ++ +KP+DKPY L+DGGG+ +LI+ NGSK WR +YRF GK KMLS+G YP V+
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   LTDARQKRDEAKKLVASGINPSEARKQQKRDRQDVTGNTFEGIAREWYVKRRDRWSESYA  120
            L+DAR+KR EA+KL+A+G +P+EA+K++K  +Q    NTFE+IAREW   + DRWS  Y 
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  121  EEMMKTFESDVFPYIGHRPIAEIKPMELMGTLSKLDERGATEKLRKVRQRCGEVWKYAIV  180
            +E++ TFE D+FPYIG RPIAEIKPM L+ +L K++ RGA EK+RKVRQRCGEV +YAIV
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  181  TGRAEYNPAPDLASAFSPHKKEHYAFLSVAELPDFFRTFNTYTGSLIVKLAMRLLIITGT  240
            TGRA+YNPAPDLASA++  KK H++FL+  ELP+F+  +  YTGS+I K A +++++TG 
Sbjct  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV  240

Query  241  RPGELRKAEWSEFDFDNRLWEVPPERMKKRRPHCVPLSDQAISILEQLKPLTGHYSYVFP  300
            R  ELR A W ++DF+ +LWE+P+E MK +RPH VPLS+Q I ++ QL P++ H + VF 
Sbjct  241  RTQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHPLVFI  300

Query  301  GRIHHSKPISEMAMNVLVRRIGYAGRVTGHGFRHTMSTILHEQGYNTAWIETQLAHVDKN  360
            GR +  KPIS  ++N  +  +GY GR+TGHGFRHTMSTILHEQG+N+AWIE QLAHVDKN
Sbjct  301  GRNDPRKPISKESINQAIELLGYKGRLTGHGFRHTMSTILHEQGFNSAWIEMQLAHVDKN  360

Query  361  SIRGTYNHAQYLDGRREMLQWYADYIDALERGDN  394
            SIR+TYNHA YLDGRREM+QWYADYID+L   ++
Sbjct  361  SIRDTYNHALYLDGRREMMQWYADYIDSLSSRES  394

116) SerAS13_4096 in NC_017573


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  434 bits (1633),  Expect = 5e-123, Method: Compositional matrix adjust.
 Identities = 237/394 (61%), Positives = 314/394 (80%), Gaps = 0/394 (0%)

Query  1    MPLTDLELRRSKPQDKPYTLSDGGGLSILIEPNGSKGWRFRYRFDGKPKMLSLGTYPTVS  60
            M+LTD+ ++ +KP+DKPY L+DGGG+ +LI+ NGSK WR +YRF GK KMLS+G YP V+
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   LTDARQKRDEAKKLVASGINPSEARKQQKRDRQDVTGNTFEGIAREWYVKRRDRWSESYA  120
            L+DAR+KR EA+KL+A+G +P+EA+K++K  +Q    NTFE+IAREW   + DRWS  Y 
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  121  EEMMKTFESDVFPYIGHRPIAEIKPMELMGTLSKLDERGATEKLRKVRQRCGEVWKYAIV  180
            +E++ TFE D+FPYIG RPIAEIKPM L+ +L K++ RGA EK+RKVRQRCGEV +YAIV
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  181  TGRAEYNPAPDLASAFSPHKKEHYAFLSVAELPDFFRTFNTYTGSLIVKLAMRLLIITGT  240
            TGRA+YNPAPDLASA++  KK H++FL+  ELP+F+  +  YTGS+I K A +++++TG 
Sbjct  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV  240

Query  241  RPGELRKAEWSEFDFDNRLWEVPPERMKKRRPHCVPLSDQAISILEQLKPLTGHYSYVFP  300
            R  ELR A W ++DF+ +LWE+P+E MK +RPH VPLS+Q I ++ QL P++ H + VF 
Sbjct  241  RTQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHPLVFI  300

Query  301  GRIHHSKPISEMAMNVLVRRIGYAGRVTGHGFRHTMSTILHEQGYNTAWIETQLAHVDKN  360
            GR +  KPIS  ++N  +  +GY GR+TGHGFRHTMSTILHEQG+N+AWIE QLAHVDKN
Sbjct  301  GRNDPRKPISKESINQAIELLGYKGRLTGHGFRHTMSTILHEQGFNSAWIEMQLAHVDKN  360

Query  361  SIRGTYNHAQYLDGRREMLQWYADYIDALERGDN  394
            SIR+TYNHA YLDGRREM+QWYADYID+L   ++
Sbjct  361  SIRDTYNHALYLDGRREMMQWYADYIDSLSSRES  394

117) SerAS9_4095 in NC_015567


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  434 bits (1633),  Expect = 5e-123, Method: Compositional matrix adjust.
 Identities = 237/394 (61%), Positives = 314/394 (80%), Gaps = 0/394 (0%)

Query  1    MPLTDLELRRSKPQDKPYTLSDGGGLSILIEPNGSKGWRFRYRFDGKPKMLSLGTYPTVS  60
            M+LTD+ ++ +KP+DKPY L+DGGG+ +LI+ NGSK WR +YRF GK KMLS+G YP V+
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   LTDARQKRDEAKKLVASGINPSEARKQQKRDRQDVTGNTFEGIAREWYVKRRDRWSESYA  120
            L+DAR+KR EA+KL+A+G +P+EA+K++K  +Q    NTFE+IAREW   + DRWS  Y 
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  121  EEMMKTFESDVFPYIGHRPIAEIKPMELMGTLSKLDERGATEKLRKVRQRCGEVWKYAIV  180
            +E++ TFE D+FPYIG RPIAEIKPM L+ +L K++ RGA EK+RKVRQRCGEV +YAIV
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  181  TGRAEYNPAPDLASAFSPHKKEHYAFLSVAELPDFFRTFNTYTGSLIVKLAMRLLIITGT  240
            TGRA+YNPAPDLASA++  KK H++FL+  ELP+F+  +  YTGS+I K A +++++TG 
Sbjct  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV  240

Query  241  RPGELRKAEWSEFDFDNRLWEVPPERMKKRRPHCVPLSDQAISILEQLKPLTGHYSYVFP  300
            R  ELR A W ++DF+ +LWE+P+E MK +RPH VPLS+Q I ++ QL P++ H + VF 
Sbjct  241  RTQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHPLVFI  300

Query  301  GRIHHSKPISEMAMNVLVRRIGYAGRVTGHGFRHTMSTILHEQGYNTAWIETQLAHVDKN  360
            GR +  KPIS  ++N  +  +GY GR+TGHGFRHTMSTILHEQG+N+AWIE QLAHVDKN
Sbjct  301  GRNDPRKPISKESINQAIELLGYKGRLTGHGFRHTMSTILHEQGFNSAWIEMQLAHVDKN  360

Query  361  SIRGTYNHAQYLDGRREMLQWYADYIDALERGDN  394
            SIR+TYNHA YLDGRREM+QWYADYID+L   ++
Sbjct  361  SIRDTYNHALYLDGRREMMQWYADYIDSLSSRES  394

118) intS in NC_013892


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  433 bits (1632),  Expect = 6e-123, Method: Compositional matrix adjust.
 Identities = 244/394 (62%), Positives = 313/394 (80%), Gaps = 0/394 (0%)

Query  1    MKLTDMAIKRAKPKEKSYMLADGNGLSLLVETNGSKGWRYRYQFTGKTKMISLGIYPVVT  60
            M LTD+ +K AKPK+K+Y LADG G+ LL++TNGSK WR +Y+F+GK KM+S+G+YP VT
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   LTEARAKRDEARKQVANGINPSEARKAEKVASISQSENTFKNIALEWYEGRKDRWSVGYR  120
            L++AR KR EARK +A G +P+EA+K EK+A      NTF  IA EW + + DRWS+ YR
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  121  DDMMDAFEKDVFPYIGDRPIADIKPMELLEVLSVMEKRGTTEKLKKVRQRCGEVWKYAII  180
            D+++D+FEKD+FPYIG RPIA+IKPM LLE L  MEKRG+ EK++KVRQRCGEV +YAI+
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  181  TGRAEYNPAPDLASAFVPHKREHYAHLSVSELPEFLSSIDKYMGSQIVRVALRILILTGV  240
            TGRA+YNPAPDLASA+   K+ H++ L+ +ELP+FL+ +  Y GS I + A +I++LTGV
Sbjct  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV  240

Query  241  RPGELRKAEWSEINFDIGIWEIPAEKMKMRRPHIVPLSEQVIELLKQIHPISGSYQYIFP  300
            R  ELR A W +I+F+  +WEIPAE MKM+RPHIVPLSEQVI L+KQ++PIS     +F 
Sbjct  241  RTQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHPLVFI  300

Query  301  SRTDYRKHISDMALNTMIRRMGYSGRATGHGFRHTMSTILHEQGYNTAWIEAQLAHVDKN  360
            +R D RK IS  ++N  I  +GY GR TGHGFRHTMSTILHEQG+N+AWIE QLAHVDKN
Sbjct  301  GRNDPRKPISKESINQAIELLGYKGRLTGHGFRHTMSTILHEQGFNSAWIEMQLAHVDKN  360

Query  361  SIRGTYNHAQYLDGRREMLQWYADYMETLERGEN  394
            SIR+TYNHA YLDGRREM+QWYADY+++L   E+
Sbjct  361  SIRDTYNHALYLDGRREMMQWYADYIDSLSSRES  394

119) ETAC_11945 in NC_020796


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  433 bits (1631),  Expect = 7e-123, Method: Compositional matrix adjust.
 Identities = 242/388 (63%), Positives = 308/388 (80%), Gaps = 0/388 (0%)

Query  1    MLLSDIQIKRAKPKDKPYTLNDGMGLSLLIDTAGSKGWRYRYRFAGKPKMISFGVYGDVS  60
            M L+DI++K AKPKDKPY L DG G+ LLI+T GSK WR +YRFAGK KM+S+GVY DV+
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   LAQARAKRDEARSMLAKGINPSEARKAEKIALQFAHENSFESVAREWHGSKKATWSEGYA  120
            LA+AR KR EAR +LA G +P+EA+K EKIA Q +  N+FE++AREWH  K   WS  Y 
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  121  KEVLNCMEKDIFPFIGQRPIEQIEPLELLTVLQKIEKRGALEQTSKIRRRCGEVLRYAVA  180
             E+++  EKDIFP+IG+RPI +I P+ LL  L+K+EKRGALE+  K+R+RCGEV+RYA+ 
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  181  TGRAKYNFAPDLAIALNKPKTQHFPFLTESELPAFISALENYKGSLVTKYATQLLMLTGV  240
            TGRA YN APDLA AL  PK  HFPFLT +ELP F++ L  Y GS++TK ATQ++MLTGV
Sbjct  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV  240

Query  241  RTIELRAAEWVEFDLENAIWEIPKERMKKRRPHLVPLSTQALSILRQLQVITGNYSLVFP  300
            RT ELR A W ++D+E  +WEIP E MK +RPH+VPLS Q + +++QL+ I+ + +LVF 
Sbjct  241  RTQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHPLVFI  300

Query  301  GRNDVRKPMSEASINKVIKLLGYHGRLTGHGFRHTMSTILHEHGFESTWIEMQLAHVDKN  360
            GRND RKP+S  SIN+ I LLGY GRLTGHGFRHTMSTILHE+GF+S+WIEMQLAHVDKN
Sbjct  301  GRNDPRKPISKESINQAIELLGYKGRLTGHGFRHTMSTILHEQGFNSAWIEMQLAHVDKN  360

Query  361  SIRGTYNHAQYILSRKKMMQWYSEFISN  388
            SIR+TYNHA Y+ +R+ MMQWY+++I +
Sbjct  361  SIRDTYNHALYLDGRREMMQWYADYIDS  388

120) W5S_3565 in NC_017845


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  432 bits (1627),  Expect = 1e-122, Method: Compositional matrix adjust.
 Identities = 243/391 (63%), Positives = 318/391 (82%), Gaps = 0/391 (0%)

Query  1    MKLNARQVDTAKPKDKPYKLADGGGLYLLVKPNGARYWRLKYRVAGKEKLLALGVYPDVT  60
            M L   +V TAKPKDKPYKLADGGG+YLL++ NG++YWR+KYR AGKEK+L++GVYPDVT
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   LadarakrdeakrGIAGGIDPSEAKRKEKAILEAQVNNTFQDIATEWHSSKLKKWSEGYA  120
            LADAR KR EA++ +A+G DP+EAK+ EK   +  ++NTF+ IA EWH  K  +WS  Y 
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  121  SDIMEAFNKDVFPYIGKKPIAEIKPLELLNVLRRMEGRGATEKAKKVRQRCGEVFRYAIV  180
             +I+++F+KD+FPYIGK+PIAEIKP+ LL+ LR+ME RGA EK +KVRQRCGEVFRYAIV
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  181  TGRAEYNPAPDLTSAMQGHESSHYPFLAAPDLPAFFEALSSYSGSMLVVLAARLLIITGL  240
            TGRA+YNPAPDL+SA+      H+PFL+A +LP F++ L++Y+GS++   A++++++TG+
Sbjct  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV  240

Query  241  RTGELRGATWKEIDSDTAVWEIPAERMKMRRPHIVPLSSQAQAIIARIREMTGRYPHIFP  300
            RT ELR A W +ID +T +WEIPAE MKM+RPHIVPLS Q   ++ ++  ++ + P +F 
Sbjct  241  RTQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHPLVFI  300

Query  301  GRNDPRKTMSEASINQVFKRIGYSGKVTGHGFRHTMSTILHEQGYNTAWIETQLAHVDKN  360
            GRNDPRK +S  SINQ +  +GY G++TGHGFRHTMSTILHEQG+N+AWIE QLAHVDKN
Sbjct  301  GRNDPRKPISKESINQAIELLGYKGRLTGHGFRHTMSTILHEQGFNSAWIEMQLAHVDKN  360

Query  361  SIRGTYNHAQYLDGRREMLQWYADYMDALEC  391
            SIR+TYNHA YLDGRREM+QWYADY+D+L  
Sbjct  361  SIRDTYNHALYLDGRREMMQWYADYIDSLSS  391

121) ECNA114_2439 in NC_017644


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  432 bits (1626),  Expect = 2e-122, Method: Compositional matrix adjust.
 Identities = 242/390 (63%), Positives = 307/390 (79%), Gaps = 0/390 (0%)

Query  1    MLLSDIQIKRAKPKDKPYTLNDGMGLSLLIDTAGSKGWRFRYRFAGKPKMISFGVYGDVS  60
            M L+DI++K AKPKDKPY L DG G+ LLI+T GSK WR +YRFAGK KM+S+GVY DV+
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   LAQARTKRDEARSMLANGINPSEARKADKIALQFAHENSFESVAREWHSSKKATWSEGYA  120
            LA+AR KR EAR +LA G +P+EA+K +KIA Q +  N+FE++AREWH  K   WS  Y 
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  121  KEVLNCMEKDIFPFIGQRPIEQIEPLELLTVLQKIEKRGALEQTSKIRRRCGEVLRYAVA  180
             E+++  EKDIFP+IG+RPI +I P+ LL  L+K+EKRGALE+  K+R+RCGEV+RYA+ 
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  181  TGRAKYNFAPDLAIALNKPKTQHFPFLTESELPEFVNALDNYQGSLVTKYATQLLMLTGV  240
            TGRA YN APDLA AL  PK  HFPFLT +ELP+F+N L  Y GS++TK ATQ++MLTGV
Sbjct  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV  240

Query  241  RTIELRAAEWAEFDLDNALWEIPKERMKKRRPHLVPLSTQAINILKKLQEITGNYSLVFP  300
            RT ELR A W ++D++  LWEIP E MK +RPH+VPLS Q I ++K+L+ I+ + +LVF 
Sbjct  241  RTQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHPLVFI  300

Query  301  GRNDVSKPMSEASINKVIKLLGYHGRLTGHGFRHTMSTILHEHGFESAWIEMQLAHVDKN  360
            GRND  KP+S  SIN+ I LLGY GRLTGHGFRHTMSTILHE+GF+SAWIEMQLAHVDKN
Sbjct  301  GRNDPRKPISKESINQAIELLGYKGRLTGHGFRHTMSTILHEQGFNSAWIEMQLAHVDKN  360

Query  361  SIRGTYNHAQYIKDRQVMMEWYASLLNTTC  390
            SIR+TYNHA Y+ +R+ MM+WYA  +++  
Sbjct  361  SIRDTYNHALYLDGRREMMQWYADYIDSLS  390

122) ECSF_2224 in NC_013654


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  432 bits (1626),  Expect = 2e-122, Method: Compositional matrix adjust.
 Identities = 242/390 (63%), Positives = 307/390 (79%), Gaps = 0/390 (0%)

Query  1    MLLSDIQIKRAKPKDKPYTLNDGMGLSLLIDTAGSKGWRFRYRFAGKPKMISFGVYGDVS  60
            M L+DI++K AKPKDKPY L DG G+ LLI+T GSK WR +YRFAGK KM+S+GVY DV+
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   LAQARTKRDEARSMLANGINPSEARKADKIALQFAHENSFESVAREWHSSKKATWSEGYA  120
            LA+AR KR EAR +LA G +P+EA+K +KIA Q +  N+FE++AREWH  K   WS  Y 
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  121  KEVLNCMEKDIFPFIGQRPIEQIEPLELLTVLQKIEKRGALEQTSKIRRRCGEVLRYAVA  180
             E+++  EKDIFP+IG+RPI +I P+ LL  L+K+EKRGALE+  K+R+RCGEV+RYA+ 
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  181  TGRAKYNFAPDLAIALNKPKTQHFPFLTESELPEFVNALDNYQGSLVTKYATQLLMLTGV  240
            TGRA YN APDLA AL  PK  HFPFLT +ELP+F+N L  Y GS++TK ATQ++MLTGV
Sbjct  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV  240

Query  241  RTIELRAAEWAEFDLDNALWEIPKERMKKRRPHLVPLSTQAINILKKLQEITGNYSLVFP  300
            RT ELR A W ++D++  LWEIP E MK +RPH+VPLS Q I ++K+L+ I+ + +LVF 
Sbjct  241  RTQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHPLVFI  300

Query  301  GRNDVSKPMSEASINKVIKLLGYHGRLTGHGFRHTMSTILHEHGFESAWIEMQLAHVDKN  360
            GRND  KP+S  SIN+ I LLGY GRLTGHGFRHTMSTILHE+GF+SAWIEMQLAHVDKN
Sbjct  301  GRNDPRKPISKESINQAIELLGYKGRLTGHGFRHTMSTILHEQGFNSAWIEMQLAHVDKN  360

Query  361  SIRGTYNHAQYIKDRQVMMEWYASLLNTTC  390
            SIR+TYNHA Y+ +R+ MM+WYA  +++  
Sbjct  361  SIRDTYNHALYLDGRREMMQWYADYIDSLS  390

123) PC1_3281 in NC_012917


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  432 bits (1625),  Expect = 2e-122, Method: Compositional matrix adjust.
 Identities = 234/386 (61%), Positives = 309/386 (81%), Gaps = 0/386 (0%)

Query  1    MALNDMQVRSAKPEEKPYTLGDGLGLSLLIEPTGSKSWRFRYRFGGKPKMISFGAYPLVS  60
            MAL D++V++AKP +KPY L+DG G+ LLI+  GSK WR +YRF+GK KM+S+G YP V+
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   LAEARKKRDEARKQVLDGINPSEQRKAQKLNLMSESENTFEIIACEWHAMKSARWSAGYA  120
            LA+AR KR EARK +  G +P+E +K +K+       NTFE IA EWH +K+ RWS  Y 
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  121  SDIMEAFRNDIFPYVGKRSIAEIKPLELLNVLRKMEKRGALEKMKKVRQRCSEVFRYAIA  180
             +I+++F +DIFPY+GKR+IAEIKP+ LL+ LRKMEKRGALEKM+KVRQRC+EVFRYAI 
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  181  TGRAEINPAADLTSVLTTHKAQHYPFLKADEIPTFIQAVESYTGSVLVQIAAKLLMLTGV  240
            TGRA+ NPA+DL+S L+T K  H+PFL A+E+P F++ + +YTGS++ + A++++MLTGV
Sbjct  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV  240

Query  241  RTIELRAAEWSEFDLEHAIWEIPAERMKKRRSHLVPLSTQALSLLSKLQTISGNYKYVFP  300
            RT ELR A W ++D+E  +WEIPAE MK +R+H+VPLS Q + L+ +L+ IS +   VF 
Sbjct  241  RTQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHPLVFI  300

Query  301  GRNDPNKPMSEGSINRMIKHIGYEGRLTGHGFRHTMSTILHEKGYDSAWIEMQLAHVDKN  360
            GRNDP KP+S  SIN+ I  +GY GRLTGHGFRHTMSTILHE+G++SAWIEMQLAHVDKN
Sbjct  301  GRNDPRKPISKESINQAIELLGYKGRLTGHGFRHTMSTILHEQGFNSAWIEMQLAHVDKN  360

Query  361  SIRGTYNHALYLEQRRDMMQWYSNCF  386
            SIR+TYNHALYL+ RR+MMQWY++ +
Sbjct  361  SIRDTYNHALYLDGRREMMQWYADYI  386

124) ECH74115_0306 in NC_011353


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  431 bits (1621),  Expect = 4e-122, Method: Compositional matrix adjust.
 Identities = 233/386 (61%), Positives = 313/386 (82%), Gaps = 0/386 (0%)

Query  18   MPLNDMQIRRAKPEAKAYTFGDGLGLSLLIEPNGSKSWRFRYRYAGKPKMISLGVYPTIT  77
            M+L D++++ AKP  K+Y ++DG G+ LLI+ NGSK WR +YR+AGK KM+S+GVYP +T
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  78   LADARSRRDEARKLVAEGKNPSEVRKEQKLAMQTESENAFEKIAREWHQLKSAKWSAGYA  137
            LADAR +R EARKL+A G +P+E +KE+K+A Q    N+FE IAREWHQLK+ +WS  Y 
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  138  SDIMEAFKNDIFPYVGTRPVGEIKPLELLNVLRKIEKRGALEKMRKVRQRCSEVNRPAIA  197
             +I+++F +DIFPY+G RP++EIKP+ LL+ LRK+EKRGALEKMRKVRQRC+EV R AI 
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  198  TGRAEYNPAADLSSALEVHQSNHFPFLKADEIPDFLRALEGYSGSKLVQIATKLLMITGV  257
            TGRA+YNPA+DL+SAL   +  HFPFL A+E+P+FL  L GY+GS + + AT+++M+TGV
Sbjct  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV  240

Query  258  RTIELRAALWQEFDLDNAIWEIPAERMKMRRPHLVPLSSQAVDLLNELKIMTGNYRYVFP  317
            RT ELR A W+++D++  +WEIPAE MKM+RPH+VPLS Q + L+++L  ++ +   VF 
Sbjct  241  RTQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHPLVFI  300

Query  318  GRNDPNRPMSEASINQAIKRIGYGGKVTGHGFRHTLSTILHEQGFESAWIEIQLAHVDKN  377
            GRNDP +P+S  SINQAI  +GY G++TGHGFRHT+STILHEQGF+SAWIE+QLAHVDKN
Sbjct  301  GRNDPRKPISKESINQAIELLGYKGRLTGHGFRHTMSTILHEQGFNSAWIEMQLAHVDKN  360

Query  378  SIRGTYNHAQYFSGRKSMMDWYSNLI  403
            SIR+TYNHA Y+ GR+ MM+WY++ I
Sbjct  361  SIRDTYNHALYLDGRREMMQWYADYI  386

125) SEEH1578_21245 in NC_021810


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  429 bits (1615),  Expect = 1e-121, Method: Compositional matrix adjust.
 Identities = 244/384 (64%), Positives = 304/384 (80%), Gaps = 0/384 (0%)

Query  1    MLLSDIQIKRAKPKDKPYTLNDGMGLSLLIDTTGSKGWRFRYRFAGKPKMISFGVYGDVS  60
            M L+DI++K AKPKDKPY L DG G+ LLI+T GSK WR +YRFAGK KM+S+GVY DV+
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   LAQARAKRDEARSMLAKGINPSEARKANKIALQFAHENSFESVAREWHSSKKTTWSEGYA  120
            LA+AR KR EAR +LA G +P+EA+K +KIA Q +  N+FE++AREWH  K   WS  Y 
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  121  KEVLNCMERDIFPFIGQRPIEQIEPLELLTVLQKIEKRGALEQTSKIRRRCGEVLRYAVA  180
             E+++  E+DIFP+IG+RPI +I P+ LL  L+K+EKRGALE+  K+R+RCGEV+RYA+ 
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  181  TGRAKYNFAPDLAIALNKPKTQHFPFLTESELPEFVNALDNYQGSLVTKYATQLLMLTGV  240
            TGRA YN APDLA AL  PK  HFPFLT +ELP+F+N L  Y GS++TK ATQ++MLTGV
Sbjct  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV  240

Query  241  RTIELRAAEWAEFDLDNALWEIPKERMKKRRPHLVPLSTQAISILKKLQEITGNYSLVFP  300
            RT ELR A W ++D++  LWEIP E MK +RPH+VPLS Q I ++K+L+ I+ + +LVF 
Sbjct  241  RTQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHPLVFI  300

Query  301  GRNDVRKPMSEASINKVIKLLGYHGRLTGHGFRHTMSTILHELGFESAWIEMQLAHVDKN  360
            GRND RKP+S  SIN+ I LLGY GRLTGHGFRHTMSTILHE GF+SAWIEMQLAHVDKN
Sbjct  301  GRNDPRKPISKESINQAIELLGYKGRLTGHGFRHTMSTILHEQGFNSAWIEMQLAHVDKN  360

Query  361  SIRGTYNHAQYLENRRKMMQIYSD  384
            SIR+TYNHA YL+ RR MMQ Y+D
Sbjct  361  SIRDTYNHALYLDGRREMMQWYAD  384

126) intS in NC_016514


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  429 bits (1616),  Expect = 1e-121, Method: Compositional matrix adjust.
 Identities = 243/393 (62%), Positives = 310/393 (79%), Gaps = 2/393 (0%)

Query  24   MMLNARKVEAAKGKEKSYKLSDGGGLYLQVEPNGSRYWRMKYRFAGKEKRLSFGVYPTVT  83
            M L   KV +AK K+K+YKL+DGGG+YL ++ NGS+YWRMKYRFAGKEK LS+GVYP VT
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  84   LADARQKREDAKKLLAAGEDPGEVKKAKKQALNAAIETLNPFRDVALEWHKMKSPKWSEG  143
            LADAR+KR +A+KLLAAG DPGE KK  K A + ++   N F  +A EWH++K+ +WS  
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLK--NTFEAIAREWHQLKADRWSLR  118

Query  144  YASDIIEAFEKDIFPHIGHRPIADIQPLELLGVLRLIEARGAMEKAKKVRQRCGEVFRYA  203
            Y  +II++FEKDIFP IG RPIA+I+P+ LL  LR +E RGA+EK +KVRQRCGEVFRYA
Sbjct  119  YRDEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYA  178

Query  204  IVTGRAIYNPAPDLASAMQGHEAVHYPFLKAKELPEFFTALNAYSGSPIVllgaqllilt  263
            IVTGRA YNPAPDLASA+     VH+PFL A+ELP+F+  L +Y+GS I   ++Q+++LT
Sbjct  179  IVTGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLT  238

Query  264  glRTGELRAGEWSEVDFNNAVWEIPKERMKMRRSHIVPLPKQALSHLKSLKDLTGNYPLM  323
            G+RT ELR + W ++DF+  +WEIP E MKM+R+HIVPL+ Q +  +K L  ++ + PL+
Sbjct  239  GVRTQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHPLV  298

Query  324  FPGRNDPSKPMSEASINQVFKRIGYAGRVTGHGFRHTMSTILHEKGFNSAWIETQLAHLD  383
            F GRNDP KP+S  SINQ +  +GY GR+TGHGFRHTMSTILHE+GFNSAWIE QLAH+D
Sbjct  299  FIGRNDPRKPISKESINQAIELLGYKGRLTGHGFRHTMSTILHEQGFNSAWIEMQLAHVD  358

Query  384  KNSIRGIYNHAQYLEGRREMMQWYANYLSELVG  416
            KNSIR+ YNHA YL+GRREMMQWYA+Y+  L +
Sbjct  359  KNSIRDTYNHALYLDGRREMMQWYADYIDSLSS  391

127) CFSAN002069_19870 in NC_021812


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  429 bits (1617),  Expect = 9e-122, Method: Compositional matrix adjust.
 Identities = 244/384 (64%), Positives = 304/384 (80%), Gaps = 0/384 (0%)

Query  17   MLLSDIQIKRAKPKDKPYTLNDGMGLSLLIDTTGSKGWRFRYRFAGKPKMISFGVYGDVS  76
            M L+DI++K AKPKDKPY L DG G+ LLI+T GSK WR +YRFAGK KM+S+GVY DV+
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  77   LAQARAKRDEARSMLAKGINPSEARKANKIALQFAHENSFESVAREWHSSKKTTWSEGYA  136
            LA+AR KR EAR +LA G +P+EA+K +KIA Q +  N+FE++AREWH  K   WS  Y 
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  137  KEVLNCMERDIFPFIGQRPIEQIEPLELLTVLQKIEKRGALEQTSKIRRRCGEVLRYAVA  196
             E+++  E+DIFP+IG+RPI +I P+ LL  L+K+EKRGALE+  K+R+RCGEV+RYA+ 
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  197  TGRAKYNFAPDLAIALNKPKTQHFPFLTESELPEFVNALDNYQGSLVTKYATQLLMLTGV  256
            TGRA YN APDLA AL  PK  HFPFLT +ELP+F+N L  Y GS++TK ATQ++MLTGV
Sbjct  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV  240

Query  257  RTIELRAAEWAEFDLDNALWEIPKERMKKRRPHLVPLSTQAISILKKLQEITGNYSLVFP  316
            RT ELR A W ++D++  LWEIP E MK +RPH+VPLS Q I ++K+L+ I+ + +LVF 
Sbjct  241  RTQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHPLVFI  300

Query  317  GRNDVRKPMSEASINKVIKLLGYHGRLTGHGFRHTMSTILHELGFESAWIEMQLAHVDKN  376
            GRND RKP+S  SIN+ I LLGY GRLTGHGFRHTMSTILHE GF+SAWIEMQLAHVDKN
Sbjct  301  GRNDPRKPISKESINQAIELLGYKGRLTGHGFRHTMSTILHEQGFNSAWIEMQLAHVDKN  360

Query  377  SIRGTYNHAQYLENRRKMMQIYSD  400
            SIR+TYNHA YL+ RR MMQ Y+D
Sbjct  361  SIRDTYNHALYLDGRREMMQWYAD  384

128) SeHA_C2638 in NC_011083


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  429 bits (1617),  Expect = 9e-122, Method: Compositional matrix adjust.
 Identities = 244/384 (64%), Positives = 304/384 (80%), Gaps = 0/384 (0%)

Query  17   MLLSDIQIKRAKPKDKPYTLNDGMGLSLLIDTTGSKGWRFRYRFAGKPKMISFGVYGDVS  76
            M L+DI++K AKPKDKPY L DG G+ LLI+T GSK WR +YRFAGK KM+S+GVY DV+
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  77   LAQARAKRDEARSMLAKGINPSEARKANKIALQFAHENSFESVAREWHSSKKTTWSEGYA  136
            LA+AR KR EAR +LA G +P+EA+K +KIA Q +  N+FE++AREWH  K   WS  Y 
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  137  KEVLNCMERDIFPFIGQRPIEQIEPLELLTVLQKIEKRGALEQTSKIRRRCGEVLRYAVA  196
             E+++  E+DIFP+IG+RPI +I P+ LL  L+K+EKRGALE+  K+R+RCGEV+RYA+ 
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  197  TGRAKYNFAPDLAIALNKPKTQHFPFLTESELPEFVNALDNYQGSLVTKYATQLLMLTGV  256
            TGRA YN APDLA AL  PK  HFPFLT +ELP+F+N L  Y GS++TK ATQ++MLTGV
Sbjct  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV  240

Query  257  RTIELRAAEWAEFDLDNALWEIPKERMKKRRPHLVPLSTQAISILKKLQEITGNYSLVFP  316
            RT ELR A W ++D++  LWEIP E MK +RPH+VPLS Q I ++K+L+ I+ + +LVF 
Sbjct  241  RTQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHPLVFI  300

Query  317  GRNDVRKPMSEASINKVIKLLGYHGRLTGHGFRHTMSTILHELGFESAWIEMQLAHVDKN  376
            GRND RKP+S  SIN+ I LLGY GRLTGHGFRHTMSTILHE GF+SAWIEMQLAHVDKN
Sbjct  301  GRNDPRKPISKESINQAIELLGYKGRLTGHGFRHTMSTILHEQGFNSAWIEMQLAHVDKN  360

Query  377  SIRGTYNHAQYLENRRKMMQIYSD  400
            SIR+TYNHA YL+ RR MMQ Y+D
Sbjct  361  SIRDTYNHALYLDGRREMMQWYAD  384

129) int in NC_014228


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  428 bits (1611),  Expect = 2e-121, Method: Compositional matrix adjust.
 Identities = 238/394 (61%), Positives = 319/394 (81%), Gaps = 0/394 (0%)

Query  1    MKLTARQVDTAKPKEKPYKLADGGGLYLLVNPNGARYWRLKYRIAGKEKLLALGVYPDIS  60
            M LT  +V TAKPK+KPYKLADGGG+YLL+N NG++YWR+KYR+AGKEK+L++GVYPD++
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   LAEARTKRNEARRTLSDGNDPIeekkaekaakaFAVSNSFESIAIEWHEHKRPNWSKGYA  120
            LA+AR KR+EAR+ L+ G DP E KK EK A+  ++ N+FE+IA EWH+ K   WS  Y 
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  121  EDILEYLKKDIFPYIGKRAVTEIKPAEMLAVLRKMEQRGVLDKLKKTRQACRQIFTYAVI  180
            ++I++ + KDIFPYIGKR+++EIKP  +L  LRKME+RG L+K++K RQ C ++F YA++
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  181  TGRAEFNPVTDLASALKTPKQKHFPHLLADQMNEFLIALAGYSGSEVTQSATRLLMLTGV  240
            TGRA++NP  DLASAL TPK+ HFP L A+++ +FL  LAGY+GS +T++AT+++MLTGV
Sbjct  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV  240

Query  241  RTIELRESEWTEFDFDKDIWQIPAERMKMRRPHIVPLSNQVKAILIKLHSITGRGKYVFP  300
            RT ELR + W ++DF+  +W+IPAE MKM+RPHIVPLS+QV  ++ +L++I+ +   VF 
Sbjct  241  RTQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHPLVFI  300

Query  301  GRNDAGKPMSEAAINQVIKRIGYDGRATGHGFRHTMSTILHEQGYNTAWIETQLAHVDKN  360
            GRND+ KP+S  +INQ I  +GY GR TGHGFRHTMSTILHEQG+N+AWIE QLAHVDKN
Sbjct  301  GRNDPRKPISKESINQAIELLGYKGRLTGHGFRHTMSTILHEQGFNSAWIEMQLAHVDKN  360

Query  361  SIRGTYNHAQYLEGRREMLQWYADHMEMLEHGEN  394
            SIR+TYNHA YL+GRREM+QWYAD ++ L   E+
Sbjct  361  SIRDTYNHALYLDGRREMMQWYADYIDSLSSRES  394

130) PC1_2828 in NC_012917


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  428 bits (1612),  Expect = 2e-121, Method: Compositional matrix adjust.
 Identities = 237/396 (60%), Positives = 309/396 (79%), Gaps = 2/396 (0%)

Query  1    MLLTDLKIKKAKAQDKPYTLNDGNGLSLLIDPKGTKGWRFRYQFANKPKLISFGTYDTVS  60
            M LTD+K+K AK++DKPY L DG G+ LLI+ +G+K WR +Y+FA K K++S+G Y  V+
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   LADARKKRDEARSMLANGINPSDARRADKLSLLFSTENTFEAVAREWHTSKLTTWSEGYA  120
            LADAR KR EAR +LA G +P++A++ +K++   S  NTFEA+AREWH  K   WS  Y 
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  121  KEVIHYLEKEIFPFLGKRPIDQITPLELLAVLQKIEKRGALEQASKIRRRCGEVFRYAVV  180
             E+I+ +EK+IFP++GKRPI +I P+ LL  L+K+EKRGALE+  K+R+RCGEVFRYA+V
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  181  TGRAMYNPAPDLDLASAMNKPKNNHFPFLTESELPDFVQALNNYKGSQITKYATQLLMLT  240
            TGRA YNPAPDL  ASA+  PK+ HFPFLT +ELP+F++ L  Y GS ITK ATQ++MLT
Sbjct  181  TGRADYNPAPDL--ASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLT  238

Query  241  GVRTIELRAAEWVEFDLDNALWEIPKERMKKRRPHLVPLSTQAVTILKELKVLTGYYQLV  300
            GVRT ELR A W ++D++  LWEIP E MK +RPH+VPLS Q + ++K+L  ++    LV
Sbjct  239  GVRTQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHPLV  298

Query  301  FPGRNDTRKPMSDAAINKVIKMLGYHGRLTGHGFRHTMSTILHEHGFNSAWIETQLAHVD  360
            F GRND RKP+S  +IN+ I +LGY GRLTGHGFRHTMSTILHE+GFNSAWIE QLAHVD
Sbjct  299  FIGRNDPRKPISKESINQAIELLGYKGRLTGHGFRHTMSTILHEQGFNSAWIEMQLAHVD  358

Query  361  KNSIRGTYNHAQYLEGRREMLQWYGEFTSEGSKKNA  396
            KNSIR+TYNHA YL+GRREM+QWY+++    S +++
Sbjct  359  KNSIRDTYNHALYLDGRREMMQWYADYIDSLSSRES  394

131) SeSA_A0666 in NC_011094


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  428 bits (1611),  Expect = 2e-121, Method: Compositional matrix adjust.
 Identities = 228/392 (59%), Positives = 315/392 (81%), Gaps = 0/392 (0%)

Query  1    MKLTARQISTAKPTEKPYKLSDGGGLYLLVNPNGSRYWRMKYRYAGKEKLLSIGVYPDVT  60
            M LT  ++ TAKP +KPYKL+DGGG+YLL+N NGS+YWRMKYR+AGKEK+LSIGVYPDVT
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   LAEARDKRTQAKRILAAGDDPSEVKQAEREAKNLAVNNSFELLALEWHEHKKPNWSSGYA  120
            LA+AR+KR++A+++LAAG+DP+E K+ E+ A++++++N+FE +A EWH+ K   WS  Y 
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  121  DDILEYLRKDIFPYIGKKAITDIKPMTMLSVLKKMEDRGVLDKLKKTRQACRQIFTYAII  180
            D+I++ + KDIFPYIGK++I++IKPM +L  L+KME RG L+K++K RQ C ++F YAI+
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  181  TGRAEFNPVTDLAGALKTPKQQHFPHLMPTQIGPFIHAVNTYSGSKVTRIATLLLMYTSV  240
            TGRA++NP  DLA+AL TPK+ HFP L + ++  F++ +  Y+GS +T+ AT ++M T+V
Sbjct  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV  240

Query  241  RTIELRASEWTEFDLDNDLWQIPKERMKMRRPHLVPLSRQVKSHLLELKKITGWGKYVFP  300
            RT ELR + W ++D++  LW+IP E MKM+RPH+VPLS QV   + +L  I+     VF 
Sbjct  241  RTQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHPLVFI  300

Query  301  GRNDAHKPMSEASINQVIKRIGFAGKVTGHGFRHTMSTILHEKGFNSAWIEAQLAHADRN  360
            GRND++KP+S  SINQ I  +G+ G++TGHGFRHTMSTILHE+GFNSAWIE QLAH D+N
Sbjct  301  GRNDPRKPISKESINQAIELLGYKGRLTGHGFRHTMSTILHEQGFNSAWIEMQLAHVDKN  360

Query  361  TIRGTYNHAQYLDGRREMLQWYADYLDELVGK  392
            +IR+TYNHA YLDGRREM+QWYADY+D L ++
Sbjct  361  SIRDTYNHALYLDGRREMMQWYADYIDSLSSR  392

132) Pecwa_1377 in NC_013421


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  427 bits (1609),  Expect = 4e-121, Method: Compositional matrix adjust.
 Identities = 235/394 (60%), Positives = 325/394 (83%), Gaps = 0/394 (0%)

Query  1    MPLTDVKVRSAKPEDKAYKLTDGEGMHLMVHPNGSKYWRLQYRFAGKQKTLALGVYPEIT  60
            M+LTD+KV++AKP DK+YKL+DG GM L+++ NGSKYWR++YRFAGK+K L++GVYP++T
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   LSEARQRRDEAKRQIATGTDPSEQKKVDKQLRQTLVDNTFKAIALEWREYKRPNWSKGYA  120
            L++AR++R EA++ +A+G DP+E KK +K  +Q  + NTF AIA EW++ K   WS  Y 
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  121  EDLMEAFENDIFPDIGKRPIAEIKPLEMLTSLRKLEKRGVLDKLRKIRQACNQVFRYAIV  180
            ++++++FE+DIFP IGKRPIAEIKP+ +L +LRK+EKRG L+K+RK+RQ C +VFRYAIV
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  181  TGRAENNpaselasalpppkaTHYPYLLPDELPDFLRALSTYSGSKVTQLATRILMLTGV  240
            TGRA+ NPA++LASAL+ PK  H+P+L ++ELP+FL  L+ Y+GS +T+ AT+I+MLTGV
Sbjct  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV  240

Query  241  RTIELRQAEWKEFDFEKRLWEVPKERMKMRRPHLVPLSDQVIDALQQLRAVTGRYNLVFP  300
            RT ELR A W ++DFE +LWE+P E MKM+RPH+VPLS+QVI  ++QL +++ +  LVF 
Sbjct  241  RTQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHPLVFI  300

Query  301  GRNDITKPMSEASINQVLKRIGYHGKATGHGFRHTMSTILHEQGYNTAWIELQLAHVDKN  360
            GRND  KP+S  SINQ +  +GY G+ TGHGFRHTMSTILHEQG+N+AWIE+QLAHVDKN
Sbjct  301  GRNDPRKPISKESINQAIELLGYKGRLTGHGFRHTMSTILHEQGFNSAWIEMQLAHVDKN  360

Query  361  TIRGTYNHAQYLEQRRSMLQWYGDFVDGLEHGDA  394
            +IR+TYNHA YL+ RR M+QWY+D++D+L   ++
Sbjct  361  SIRDTYNHALYLDGRREMMQWYADYIDSLSSRES  394

133) SeSA_A0374 in NC_011094


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  427 bits (1607),  Expect = 6e-121, Method: Compositional matrix adjust.
 Identities = 245/395 (63%), Positives = 312/395 (79%), Gaps = 2/395 (0%)

Query  1    MMLNARKVEAAKGKEKSYKLADGGGLYLQVEPNGSRYWRMKYRFAGKEKRLSFGVYPAVS  60
            M L   KV +AK K+K+YKLADGGG+YL ++ NGS+YWRMKYRFAGKEK LS+GVYP V+
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   LADARQKREDAKKLLAAGNDPGEVkkakklalTSATEIVNPFKEVALEWHKMKSPKWSKG  120
            LADAR+KR +A+KLLAAG DPGE KK  K+  +    + N F  +A EWH++K+ +WS  
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKI--AQQMSLKNTFEAIAREWHQLKADRWSLR  118

Query  121  YASDILEAFEKDIFPHIGQRPIADIKPLELLEVLRLIEARGAMEKAKKVRQRCGEVFRYA  180
            Y  +I+++FEKDIFP IG+RPIA+IKP+ LLE LR +E RGA+EK +KVRQRCGEVFRYA
Sbjct  119  YRDEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYA  178

Query  181  IVTGRAIYNPAPDLASAMQGHEAVHYPFLKATELPEFFTALNAYTGSPIVVLGAHLLILT  240
            IVTGRA YNPAPDLASA+     VH+PFL A ELP+F+  L +YTGS I   ++++++LT
Sbjct  179  IVTGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLT  238

Query  241  GLRTGELRAAEWCEIDFDNALWEIPKERMKMRRAHLVPLSNQalalletlkeltGNYPLM  300
            G+RT ELR A W +IDF+  LWEIP E MKM+R+H+VPLS+Q + L+  L  ++ + PL+
Sbjct  239  GVRTQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHPLV  298

Query  301  FPGRNDPSKSMSEASINQVFKRIGYAGRVTGHGFRHTMSTILHEKGFNSAWIETQLAHLD  360
            F GRNDP K++S  SINQ +  +GY GR+TGHGFRHTMSTILHE+GFNSAWIE QLAH+D
Sbjct  299  FIGRNDPRKPISKESINQAIELLGYKGRLTGHGFRHTMSTILHEQGFNSAWIEMQLAHVD  358

Query  361  KNSIRGIYNHAQYLEGRREMMQWYANYLSELVGNH  395
            KNSIR+ YNHA YL+GRREMMQWYA+Y+  L + +
Sbjct  359  KNSIRDTYNHALYLDGRREMMQWYADYIDSLSSRE  393

134) PC1_2870 in NC_012917


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  425 bits (1600),  Expect = 2e-120, Method: Compositional matrix adjust.
 Identities = 235/394 (60%), Positives = 321/394 (82%), Gaps = 0/394 (0%)

Query  1    MPLTDVKVRSAKPEDKAYKLTDGEGMHLMVHPNGSKYWRLQYRFDGKQKTLALGVYPEIT  60
            M+LTD+KV++AKP DK+YKL+DG GM L+++ NGSKYWR++YRF GK+K L++GVYP++T
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   LSEARQRRDEAKRQIATGTDPSEQKKVDKQLRQTLVDNTFKAIALEWHEYKRPNWSKGYA  120
            L++AR++R EA++ +A+G DP+E KK +K  +Q  + NTF AIA EWH+ K   WS  Y 
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  121  EDLMEAFENDIFPDIGKRPVAEIKPLEMLTSLRKLEKRGVLDKLRKIRQACNQVFRYAIV  180
            ++++++FE+DIFP IGKRP+AEIKP+ +L +LRK+EKRG L+K+RK+RQ C +VFRYAIV
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  181  TGRAENNpaselasalpppkaTHYPHLLPDELPTFLRALSTYSGSKVTQLATRILMLTGV  240
            TGRA+ NPA++LASAL+ PK  H+P L ++ELP FL  L+ Y+GS +T+ AT+I+MLTGV
Sbjct  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV  240

Query  241  RTIELRQAEWKEFDFEKGLWEVPKERMKMRRPHLVPLSAQVIDALQQLQAVTGRYNLVFP  300
            RT ELR A W ++DFE  LWE+P E MKM+RPH+VPLS QVI  ++QL++++ +  LVF 
Sbjct  241  RTQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHPLVFI  300

Query  301  GRNDITKPMSEASINQVLKRIGYHGKATGHGFRHTMSTILHEQGYNTAWIELQLAHVDKN  360
            GRND  KP+S  SINQ +  +GY G+ TGHGFRHTMSTILHEQG+N+AWIE+QLAHVDKN
Sbjct  301  GRNDPRKPISKESINQAIELLGYKGRLTGHGFRHTMSTILHEQGFNSAWIEMQLAHVDKN  360

Query  361  TIRGTYNHAQYLEQRRGMLQWYGDFIDGLEHGDA  394
            +IR+TYNHA YL+ RR M+QWY+D+ID+L   ++
Sbjct  361  SIRDTYNHALYLDGRREMMQWYADYIDSLSSRES  394

135) KPHS_10130 in NC_016845


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  424 bits (1598),  Expect = 2e-120, Method: Compositional matrix adjust.
 Identities = 236/386 (62%), Positives = 312/386 (81%), Gaps = 0/386 (0%)

Query  1    MPLNDMQIRRAKPEAKAYTLGDGQGLSLLIEPNGSKSWRFRYRYAGKPKMISLGVYPTIT  60
            M+L D++++ AKP  K+Y L+DG G+ LLI+ NGSK WR +YR+AGK KM+S+GVYP +T
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   LadarsrrddarKLVAEGKNPSEVRKEQKIALQTESESAFEKIATEWHQMKSAKWSAGYA  120
            LADAR +R +ARKL+A G +P+E +KE+KIA Q    ++FE IA EWHQ+K+ +WS  Y 
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  121  SDIMEAFQNDIFPYVGTRPIGEIKPLELLNVLRKIEKRGALEKMRKVRQRCSEVFRYAIA  180
             +I+++F++DIFPY+G RPI+EIKP+ LL+ LRK+EKRGALEKMRKVRQRC+EVFRYAI 
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  181  TGRAEFNPAADLSSALEVHQSNHFPFLKADELPDFLRALDSYTGSRLVQIATKLLMITGV  240
            TGRA++NPA+DL+SAL   +  HFPFL A+ELP+FL  L +YTGS + + AT+++M+TGV
Sbjct  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV  240

Query  241  RTIELRAALWSEFDLDNAIWEISAERMKMRRSHLVPLSTQALDLLNELKMMTGNYRYVFP  300
            RT ELR A W ++D++  +WEI+AE MKM+R+H+VPLS Q + L+++L  ++ +   VF 
Sbjct  241  RTQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHPLVFI  300

Query  301  GRNDPNKPMSEASINQVIKRIGYGGRLTGHGFRHTMSTILHEKGFDSAWIEIQLAHVDKN  360
            GRNDP KP+S  SINQ I  +GY GRLTGHGFRHTMSTILHE+GF+SAWIE+QLAHVDKN
Sbjct  301  GRNDPRKPISKESINQAIELLGYKGRLTGHGFRHTMSTILHEQGFNSAWIEMQLAHVDKN  360

Query  361  SIRGTYNHAQYLEKRSSMIQWYNDYI  386
            SIR+TYNHA YL+ R  M+QWY DYI
Sbjct  361  SIRDTYNHALYLDGRREMMQWYADYI  386

136) N559_4136 in NC_022082


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  424 bits (1598),  Expect = 2e-120, Method: Compositional matrix adjust.
 Identities = 236/386 (62%), Positives = 312/386 (81%), Gaps = 0/386 (0%)

Query  1    MPLNDMQIRRAKPEAKAYTLGDGQGLSLLIEPNGSKSWRFRYRYAGKPKMISLGVYPTIT  60
            M+L D++++ AKP  K+Y L+DG G+ LLI+ NGSK WR +YR+AGK KM+S+GVYP +T
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   LadarsrrddarKLVAEGKNPSEVRKEQKIALQTESESAFEKIATEWHQMKSAKWSAGYA  120
            LADAR +R +ARKL+A G +P+E +KE+KIA Q    ++FE IA EWHQ+K+ +WS  Y 
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  121  SDIMEAFQNDIFPYVGTRPIGEIKPLELLNVLRKIEKRGALEKMRKVRQRCSEVFRYAIA  180
             +I+++F++DIFPY+G RPI+EIKP+ LL+ LRK+EKRGALEKMRKVRQRC+EVFRYAI 
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  181  TGRAEFNPAADLSSALEVHQSNHFPFLKADELPDFLRALDSYTGSRLVQIATKLLMITGV  240
            TGRA++NPA+DL+SAL   +  HFPFL A+ELP+FL  L +YTGS + + AT+++M+TGV
Sbjct  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV  240

Query  241  RTIELRAALWSEFDLDNAIWEISAERMKMRRSHLVPLSTQALDLLNELKMMTGNYRYVFP  300
            RT ELR A W ++D++  +WEI+AE MKM+R+H+VPLS Q + L+++L  ++ +   VF 
Sbjct  241  RTQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHPLVFI  300

Query  301  GRNDPNKPMSEASINQVIKRIGYGGRLTGHGFRHTMSTILHEKGFDSAWIEIQLAHVDKN  360
            GRNDP KP+S  SINQ I  +GY GRLTGHGFRHTMSTILHE+GF+SAWIE+QLAHVDKN
Sbjct  301  GRNDPRKPISKESINQAIELLGYKGRLTGHGFRHTMSTILHEQGFNSAWIEMQLAHVDKN  360

Query  361  SIRGTYNHAQYLEKRSSMIQWYNDYI  386
            SIR+TYNHA YL+ R  M+QWY DYI
Sbjct  361  SIRDTYNHALYLDGRREMMQWYADYI  386

137) PAU_02730 in NC_012962


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  424 bits (1598),  Expect = 3e-120, Method: Compositional matrix adjust.
 Identities = 241/394 (62%), Positives = 308/394 (79%), Gaps = 0/394 (0%)

Query  1    MKLTDLAIKRAKPKEKAYTLADGNGLSLLIDTKGSKGWRYRYQFAGKTKMISLGVYPVVT  60
            M LTD+ +K AKPK+K+Y LADG G+ LLI+T+GSK WR +Y+FAGK KM+S+GVYP VT
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   LTEARAKRDEARKLVANGINPSEARKAEKTAAINQTEHTFKNIALEWYNSRKDRWSVGYR  120
            L++AR KR EARKL+A G +P+EA+K EK A      +TF  IA EW + + DRWS+ YR
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  121  EDMMSAFENDVFPYIGDRPIAEIKPLELLEVLSIMEKRGTTEKLKKVRQRCGEVWKYAII  180
            ++++ +FE+D+FPYIG RPIAEIKP+ LLE L  MEKRG+ EK++KVRQRCGEV +YAI+
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  181  TGRAEYNPAPDLASAFIPHKREHYAHLSVGELPEFLRSIDKYMGSQIVRTALRILILTGV  240
            TGRA+YNPAPDLASA+   K+ H++ L+  ELP+FL  +  Y GS I +TA +I++LTGV
Sbjct  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV  240

Query  241  RPGELRKAEWSEIDLDKAIWEISAEKMKMRRAHIVPLSEQVINLLKQIQPISGSYQYVFP  300
            R  ELR A W +ID++  +WEI+AE MKM+R+HIVPLSEQVI L+KQ++PIS     VF 
Sbjct  241  RTQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHPLVFI  300

Query  301  SRTDYRKHLSDMALNTMIRRMGYSGRATGHGFRHTMSTILHEQNYPSEWIETQLAHVDKN  360
            +R D RK +S  ++N  I  +GY GR TGHGFRHTMSTILHEQ + S WIE QLAHVDKN
Sbjct  301  GRNDPRKPISKESINQAIELLGYKGRLTGHGFRHTMSTILHEQGFNSAWIEMQLAHVDKN  360

Query  361  SIRGTYNHAQYLDGRREMLQWYADYMDALERGEN  394
            SIR+TYNHA YLDGRREM+QWYADY+D+L   E+
Sbjct  361  SIRDTYNHALYLDGRREMMQWYADYIDSLSSRES  394

138) A225_1133 in NC_018106


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  424 bits (1597),  Expect = 3e-120, Method: Compositional matrix adjust.
 Identities = 233/387 (61%), Positives = 313/387 (81%), Gaps = 0/387 (0%)

Query  1    MPLNDMQIRRAKPEAKAYTLGDGQGLSLLIEPNGSKSWRFRYRFAGKPKMISLGVYPTIT  60
            M+L D++++ AKP  K+Y L+DG G+ LLI+ NGSK WR +YRFAGK KM+S+GVYP +T
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   LadarsrrddarKLVAEGKNPSEVRKEQKIALQTESESAFEKIATEWHQMKSAKWSAGYA  120
            LADAR +R +ARKL+A G +P+E +KE+KIA Q    ++FE IA EWHQ+K+ +WS  Y 
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  121  SDIMEAFQNDIFPYVGTRPVGEIKPLELLNVLRKIEKRGALEKMRKVRQRCSEVFRYAIA  180
             +I+++F++DIFPY+G RP++EIKP+ LL+ LRK+EKRGALEKMRKVRQRC+EVFRYAI 
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  181  TGRAEFNPAAELSSALDVHQSNHFPFLKADEIPDFLRALNGYTGSRLVLIATKLLMITGV  240
            TGRA++NPA++L+SAL   +  HFPFL A+E+P+FL  L GYTGS +   AT+++M+TGV
Sbjct  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV  240

Query  241  RTIELRAALWSEFDLDNAIWEIPAERMKMRRSHLVPLSTQALDLLNELKMMTGNYRYVFP  300
            RT ELR A W ++D++  +WEIPAE MKM+R+H+VPLS Q + L+++L  ++ +   VF 
Sbjct  241  RTQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHPLVFI  300

Query  301  GRNDPNKPMSEASVNQVIKRIGYGGKVTGHGFRHSMSTILHEHGFESSWIEMQLAHVDKN  360
            GRNDP KP+S  S+NQ I  +GY G++TGHGFRH+MSTILHE+GF+S+WIEMQLAHVDKN
Sbjct  301  GRNDPRKPISKESINQAIELLGYKGRLTGHGFRHTMSTILHEQGFNSAWIEMQLAHVDKN  360

Query  361  SIRGTYNHAQYLDKRKVMMQWYADNVQ  387
            SIR+TYNHA YLD R+ MMQWYAD ++
Sbjct  361  SIRDTYNHALYLDGRREMMQWYADYID  387

139) W5S_1285 in NC_017845


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  424 bits (1596),  Expect = 4e-120, Method: Compositional matrix adjust.
 Identities = 242/390 (63%), Positives = 321/390 (83%), Gaps = 0/390 (0%)

Query  1    MPLNARQIETAKPQDTEYKLTDGAGLYLLIKPNGAKYWRLKYRVAGKEKKLSIGVYPDIS  60
            M+L   ++ TAKP+D  YKL+DG+G+YLLI+ NG+KYWR+KYR AGKEK LSIGVYPD++
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   LAEARLKREEARKIVASGGDPSEQKQVERQAKKISIDNTFKAIALEWHEYKRPNWSKGYA  120
            LA+AR KR EARK++A+GGDP+E K+ E+ A+++S+ NTF AIA EWH+ K   WS  Y 
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  121  EDLMEAFENDIFPDIGKRPIAEIKPLEMLTSLRKLEKRGVLDKLRKIRQACNQVFRYAIV  180
            ++++++FE+DIFP IGKRPIAEIKP+ +L +LRK+EKRG L+K+RK+RQ C +VFRYAIV
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  181  TGRAENNpaselasalpppkaTHYPHLLPDELPDFLRALSTYSGSKVTQLATRILMLTGV  240
            TGRA+ NPA++LASAL+ PK  H+P L ++ELP+FL  L+ Y+GS +T+ AT+I+MLTGV
Sbjct  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV  240

Query  241  RTIELRQAEWKEFDFEKGLWEVPKERMKMRRPHLVPLSDQVIDALQQLRAVTGRYNLVFP  300
            RT ELR A W ++DFE  LWE+P E MKM+RPH+VPLS+QVI  ++QL +++ +  LVF 
Sbjct  241  RTQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHPLVFI  300

Query  301  GRNDITKPMSEASINQVLKRIGYHGKATGHGFRHTMSTILHEQGYNTAWIELQLAHVDKN  360
            GRND  KP+S  SINQ +  +GY G+ TGHGFRHTMSTILHEQG+N+AWIE+QLAHVDKN
Sbjct  301  GRNDPRKPISKESINQAIELLGYKGRLTGHGFRHTMSTILHEQGFNSAWIEMQLAHVDKN  360

Query  361  TIRGTYNHAQYLEQRRGMLQWYGDFIDGLE  390
            +IR+TYNHA YL+ RR M+QWY+D+ID+L 
Sbjct  361  SIRDTYNHALYLDGRREMMQWYADYIDSLS  390

140) Pecwa_1403 in NC_013421


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  424 bits (1596),  Expect = 4e-120, Method: Compositional matrix adjust.
 Identities = 235/390 (61%), Positives = 319/390 (82%), Gaps = 0/390 (0%)

Query  1    MPLTDVKVRSAKPEDKAYKLTDGEGMHLMVHPNGSKYWRLQYRFDGKQKTLALGVYPEIT  60
            M+LTD+KV++AKP DK+YKL+DG GM L+++ NGSKYWR++YRF GK+K L++GVYP++T
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   LSEARQRRDEAKRQIATGTDPSEQKKVDKQLRQTLVDNTFKAIALEWHEYKRPNWSKGYS  120
            L++AR++R EA++ +A+G DP+E KK +K  +Q  + NTF AIA EWH+ K   WS  Y 
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  121  EDLMEAFENDIFPDIGKRPVAEIKPLEMLTSLRKLEKRGVLDKLRKIRQACNQVFRYAIV  180
            ++++++FE+DIFP IGKRP+AEIKP+ +L +LRK+EKRG L+K+RK+RQ C +VFRYAIV
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  181  TGRAENNpaselasalpppkaTHYPHLLPDELPDFLRALSTYSGSKITQLATRILMLTGV  240
            TGRA+ NPA++LASAL+ PK  H+P L ++ELP+FL  L+ Y+GS IT+ AT+I+MLTGV
Sbjct  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV  240

Query  241  RTIELRQAEWKEFDFEKGLWEVPKERMKMRRPHLVPLSDQVIDALQQLRAVTGRYNLVFP  300
            RT ELR A W ++DFE  LWE+P E MKM+RPH+VPLS+QVI  ++QL +++ +  LVF 
Sbjct  241  RTQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHPLVFI  300

Query  301  GRNDITKPMSEASINQVLKRIGYHGKATGHGFRHTMSTILHEQGYNTAWIELQLAHVDKN  360
            GRND  KP+S  SINQ +  +GY G+ TGHGFRHTMSTILHEQG+N+AWIE+QLAHVDKN
Sbjct  301  GRNDPRKPISKESINQAIELLGYKGRLTGHGFRHTMSTILHEQGFNSAWIEMQLAHVDKN  360

Query  361  TIRGTYNHAQYLEQRRGMLQWYGDFTDGLE  390
            +IR+TYNHA YL+ RR M+QWY+D+ D+L 
Sbjct  361  SIRDTYNHALYLDGRREMMQWYADYIDSLS  390

141) S70_17360 in NC_017731


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  423 bits (1593),  Expect = 7e-120, Method: Compositional matrix adjust.
 Identities = 246/394 (63%), Positives = 321/394 (82%), Gaps = 0/394 (0%)

Query  1    MKLTVKQIDSSKPKEKDYKLSDGGGLYLLVKTNGGKYWRLKYRIDGKEKLLAIGVYPTVT  60
            M LT  ++ ++KPK+K YKL+DGGG+YLL++TNG+KYWR+KYR+ GKEK+L+IGVYP VT
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   ladarrkrddakrlladGIDPNQQRKEQKQASKIDSVNTFKNIALEWYEGRKDRWSVGYR  120
            LADAR KR +A++LLA G DP + +KE+K A ++   NTF  IA EW + + DRWS+ YR
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  121  DDMMDAFEKDVFPYIGNRPIAEIKPMELLEVLSIMEKRGATEKLKKVRQRCGEVWKYAII  180
            D+++D+FEKD+FPYIG+RPIAEIKPM LLE L  MEKRGA EK++KVRQRCGEV +YAI+
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  181  TGRAEYNPAPDLASAFVPHKREHYAHLSVSELPDFLSSIDKYMGSQIVRVALRVLILTGV  240
            TGRA+YNPAPDLASA+   K+ H++ L+ +ELP+FL+ +  Y GS I + A ++++LTGV
Sbjct  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV  240

Query  241  RPGELRKAEWSEINFDTKIWEIPAEKMKMRRPHIVPLSEQVIDLLRQIHPISGSYQYIFP  300
            R  ELR A W +I+F+TK+WEIPAE MKM+RPHIVPLSEQVI L++Q++PIS     +F 
Sbjct  241  RTQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHPLVFI  300

Query  301  SRTDYRKHISDMALNTMIRRMGYSGRATGHGFRHTMSTILHEQGYNTAWIETQLAHVDKN  360
            +R D RK IS  ++N  I  +GY GR TGHGFRHTMSTILHEQG+N+AWIE QLAHVDKN
Sbjct  301  GRNDPRKPISKESINQAIELLGYKGRLTGHGFRHTMSTILHEQGFNSAWIEMQLAHVDKN  360

Query  361  SIRGTYNHAQYIDGRREMLQWYADYMGALENGDN  394
            SIR+TYNHA Y+DGRREM+QWYADY+++L + ++
Sbjct  361  SIRDTYNHALYLDGRREMMQWYADYIDSLSSRES  394

142) ETAE_0799 in NC_013508


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  422 bits (1589),  Expect = 1e-119, Method: Compositional matrix adjust.
 Identities = 235/389 (61%), Positives = 315/389 (81%), Gaps = 0/389 (0%)

Query  18   MPLNDMQIRRAKPEAKAYTLGDGQGLSLLIEPNGSKSWRFRYRFAGKPKMISLGVYPTIT  77
            M+L D++++ AKP  K+Y L+DG G+ LLI+ NGSK WR +YRFAGK KM+S+GVYP +T
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  78   LadarsrrddarKLVAEGKNPSEVRKEQKIALQTESESAFEKIATEWHQMKSTKWSEGYA  137
            LADAR +R +ARKL+A G +P+E +KE+KIA Q    ++FE IA EWHQ+K+ +WS  Y 
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  138  SDIMEAFQNDIFPYVGTRPIGEIKPLELLNVLRKIEKRGALEKMRKVRQRCSEVFRYAIA  197
             +I+++F++DIFPY+G RPI+EIKP+ LL+ LRK+EKRGALEKMRKVRQRC+EVFRYAI 
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  198  TGRAEFNPAADLSSALDVHQSNHFPFLKADEIPDFLRALDGYTGSKLVQIATKLLMITGV  257
            TGRA++NPA+DL+SAL   +  HFPFL A+E+P+FL  L GYTGS + + AT+++M+TGV
Sbjct  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV  240

Query  258  RTIELRAALWSEFDLDNAIWEIPAERMKMRRAHLVPLSTQALDLLNELKIMSGNYRYVFP  317
            RT ELR A W ++D++  +WEIPAE MKM+R+H+VPLS Q + L+++L  +S +   VF 
Sbjct  241  RTQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHPLVFI  300

Query  318  GRNDPNKPMSEASINQVIKRIGYSGRVTGHGFRHTLSTILHEKGFSTAWVEMQLAHTDKN  377
            GRNDP KP+S  SINQ I  +GY GR+TGHGFRHT+STILHE+GF++AW+EMQLAH DKN
Sbjct  301  GRNDPRKPISKESINQAIELLGYKGRLTGHGFRHTMSTILHEQGFNSAWIEMQLAHVDKN  360

Query  378  KIRGTYNHAQYLEDRRNMMQFYANYFIPL  406
             IR+TYNHA YL++RR+MMQ YA+Y+ +L
Sbjct  361  SIRDTYNHALYLDGRREMMQWYADYIDSL  389

143) EcE24377A_3377 in NC_009801


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  419 bits (1579),  Expect = 8e-119, Method: Compositional matrix adjust.
 Identities = 244/394 (62%), Positives = 317/394 (81%), Gaps = 0/394 (0%)

Query  1    MALTARQVETARPKEKDYKLSDERGLYLLVKTTGARYWRLKYRIAGKEKKLALGVYPDIS  60
            MALT  +V TA+PK+K YKL+D  G+YLL++T G++YWR+KYR+AGKEK L++GVYPD++
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   LAEARIKRDDARKIISEGGDPGEKKRKEKLTQKISATNTFHALATEWHQHKSLSWSESYT  120
            LA+AR KR +ARK+++ GGDPGE K+ EK++Q++S  NTF+A+A EWHQ K+  WS  Y 
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  121  RSVLEALDKDIFPYLGKRSVTDILPLEMLEILRRIEKRGSLEKLRKVRQYCNQIFRYAIA  180
              ++++++KDIFPY+GKR++++I P+ +LE LR++EKRG+LEK+RKVRQ C ++FRYAI 
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  181  TGRATVNPASELTSTLAAPKAAHFPHLRADELPVFLRKLAEYHGSPVTrmatnlllltgl  240
            TGRA  NPA++L+S+LA+PK  HFP L A+ELP FL  LA Y GS +T+ AT++++LTG+
Sbjct  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV  240

Query  241  rtielrSAEWSEIDFDNALWTIPESRMKMRRKHVVPLSRQATDILLQLKTFSGQYRLVFP  300
            RT ELR A W +IDF+  LW IP   MKM+R H+VPLS Q   ++ QL  +S +  LVF 
Sbjct  241  RTQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHPLVFI  300

Query  301  GRCDINKPMSEASINMVLKRIGYDGRATGHGFRHTMSTILHEQGFNSAWIEMQLAHVDKN  360
            GR D  KP+S  SIN  +  +GY GR TGHGFRHTMSTILHEQGFNSAWIEMQLAHVDKN
Sbjct  301  GRNDPRKPISKESINQAIELLGYKGRLTGHGFRHTMSTILHEQGFNSAWIEMQLAHVDKN  360

Query  361  SIRGTYNHALYLDGRREMMQWYADYIDSLSIQES  394
            SIR+TYNHALYLDGRREMMQWYADYIDSLS +ES
Sbjct  361  SIRDTYNHALYLDGRREMMQWYADYIDSLSSRES  394

144) EcSMS35_3112 in NC_010498


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  419 bits (1578),  Expect = 9e-119, Method: Compositional matrix adjust.
 Identities = 245/394 (63%), Positives = 317/394 (81%), Gaps = 0/394 (0%)

Query  1    MALTARQVETARPKEKDYKLSDERGLYLLVKTTGARYWRLKYRIAGKEKKLALGVYPDVS  60
            MALT  +V TA+PK+K YKL+D  G+YLL++T G++YWR+KYR+AGKEK L++GVYPDV+
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   LAEARIKRDDARKIISEGGDPGEKKRKEKLTQKISATNTFHALATEWHQHKSLSWSESYA  120
            LA+AR KR +ARK+++ GGDPGE K+ EK++Q++S  NTF+A+A EWHQ K+  WS  Y 
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  121  RSVLEALDKDIFPYLGKRSVTDILPLEMLEILRRIEKRGSLEKLRKVRQYCNQIFRYAIA  180
              ++++++KDIFPY+GKR++++I P+ +LE LR++EKRG+LEK+RKVRQ C ++FRYAI 
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  181  TGRATVNPASELTSTLAAPKAAHFPHLRADELPVFLRKLAEYHGSPVTrmatnlllltgl  240
            TGRA  NPA++L+S+LA+PK  HFP L A+ELP FL  LA Y GS +T+ AT++++LTG+
Sbjct  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV  240

Query  241  rtielrSAEWSEIDFDNALWTIPESRMKMRRKHVVPLSRQATDILLQLKTFSGQYRLVFP  300
            RT ELR A W +IDF+  LW IP   MKM+R H+VPLS Q   ++ QL  +S +  LVF 
Sbjct  241  RTQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHPLVFI  300

Query  301  GRCDINKPMSEASINMVLKRIGYDGRATGHGFRHTMSTILHEQGFNSAWIEMQLAHVDKN  360
            GR D  KP+S  SIN  +  +GY GR TGHGFRHTMSTILHEQGFNSAWIEMQLAHVDKN
Sbjct  301  GRNDPRKPISKESINQAIELLGYKGRLTGHGFRHTMSTILHEQGFNSAWIEMQLAHVDKN  360

Query  361  SIRGTYNHALYLDGRREMMQWYADYIDSLSIQES  394
            SIR+TYNHALYLDGRREMMQWYADYIDSLS +ES
Sbjct  361  SIRDTYNHALYLDGRREMMQWYADYIDSLSSRES  394

145) SN31241_7100 in NC_021902


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  417 bits (1571),  Expect = 3e-118, Method: Compositional matrix adjust.
 Identities = 243/394 (62%), Positives = 316/394 (81%), Gaps = 0/394 (0%)

Query  1    MALTARQVETARPKEKDYKLSDERGLYLLVKTTGARYWRLKYRIAGKEKKLALGVYPDVS  60
            MALT  +V TA+PK+K YKL+D  G+YLL++T G++YWR+KYR+AGKEK L++GVYPDV+
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   LAEARIKRDDARKIISEGGDPGEKKRKEKLTQKISATNTFHALATEWHQHKSLSWSESYA  120
            LA+AR KR +ARK+++ GGDPGE K+ EK++Q++S  NTF+A+A EWHQ K+  WS  Y 
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  121  RSVLEALDKDIFPYLGKRSVTDILPLEMLEILRRIEKRGSLEKLRKVRQYCNQIFRYAIA  180
              ++++++KDIFPY+GKR++++I P+ +LE LR++EKRG+LEK+RKVRQ C ++FRYAI 
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  181  TGRATVNPASELTSTLAAPKAAHFPHLRADELPVFLRKLAEYHGSPVTrmatnlllltgl  240
            TGRA  NPA++L+S+LA+PK  HFP L A+ELP FL  LA Y GS +T+ AT++++LTG+
Sbjct  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV  240

Query  241  rtielrSAEWSEIDFDNALWTIPESRMKMRRKHVVPLSRQTTDILLQLKTFSGQYQLVFP  300
            RT ELR A W +IDF+  LW IP   MKM+R H+VPLS Q   ++ QL  +S +  LVF 
Sbjct  241  RTQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHPLVFI  300

Query  301  GRCDINKPMSEASINMVLKRIGYDGRATGHGFRHTMSTILHEQGFNSAWIEMQLAHVDKN  360
            GR D  KP+S  SIN  +  +GY GR TGHGFRHTMSTILHEQGFNSAWIEMQLAHVDKN
Sbjct  301  GRNDPRKPISKESINQAIELLGYKGRLTGHGFRHTMSTILHEQGFNSAWIEMQLAHVDKN  360

Query  361  AIRGTYNHAQYLDGRREMMQWYADYIDSLSRQES  394
            +IR+TYNHA YLDGRREMMQWYADYIDSLS +ES
Sbjct  361  SIRDTYNHALYLDGRREMMQWYADYIDSLSSRES  394

146) SeHA_C4738 in NC_011083


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  417 bits (1570),  Expect = 4e-118, Method: Compositional matrix adjust.
 Identities = 243/394 (62%), Positives = 316/394 (81%), Gaps = 0/394 (0%)

Query  1    MALTARQVETARPKEKDYKLSDERGLYLLVKTTGARYWRLKYRIAGKEKKLALGVYPDVS  60
            MALT  +V TA+PK+K YKL+D  G+YLL++T G++YWR+KYR+AGKEK L++GVYPDV+
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   LAEARIKRDDARKIISEGGDPGEKKRKEKLTQKISATNTFHALATEWHQHKSLSWSESYA  120
            LA+AR KR +ARK+++ GGDPGE K+ EK++Q++S  NTF+A+A EWHQ K+  WS  Y 
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  121  RSVLEALDKDIFPYLGKRSVTDILPLEMLEILRRIEKRGSLEKLRKVRQYCNQIFRYAIA  180
              ++++++KDIFPY+GKR++++I P+ +LE LR++EKRG+LEK+RKVRQ C ++FRYAI 
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  181  TGRATVNPASELTSTLAAPKAAHFPHLRADELPVFLRKLAEYHGSPVTrmatnlllltgl  240
            TGRA  NPA++L+S+LA+PK  HFP L A+ELP FL  LA Y GS +T+ AT++++LTG+
Sbjct  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV  240

Query  241  rtielrSAEWSEIDFDNALWTIPESRMKMRRKHVVPLSRQATDILLQLKTFSGQYRLVFP  300
            RT ELR A W +IDF+  LW IP   MKM+R H+VPLS Q   ++ QL  +S +  LVF 
Sbjct  241  RTQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHPLVFI  300

Query  301  GRCDINKPMSEASINMVLKRIGYDGRATGHGFRHTMSTILHEQGFNSAWIEMQLAHVDKN  360
            GR D  KP+S  SIN  +  +GY GR TGHGFRHTMSTILHEQGFNSAWIEMQLAHVDKN
Sbjct  301  GRNDPRKPISKESINQAIELLGYKGRLTGHGFRHTMSTILHEQGFNSAWIEMQLAHVDKN  360

Query  361  AIRGTYNHAQYLDGRREMMQWYADYIDSLSRQES  394
            +IR+TYNHA YLDGRREMMQWYADYIDSLS +ES
Sbjct  361  SIRDTYNHALYLDGRREMMQWYADYIDSLSSRES  394

147) ESA_03025 in NC_009778


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  417 bits (1569),  Expect = 5e-118, Method: Compositional matrix adjust.
 Identities = 241/393 (62%), Positives = 314/393 (80%), Gaps = 2/393 (0%)

Query  1    MMLNARKVEAAKGKEKSYKLSDGGGLYLQVEPNGSRYWRMKYRFGGKEKRLSFGVYPTVS  60
            M L   KV +AK K+K+YKL+DGGG+YL ++ NGS+YWRMKYRF+GKEK LS+GVYP V+
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   LADARQKREEAKKLLATGDDPSEVkkakklaliaaTEIVNPFRDVALEWHKMKSPKWSEG  120
            LADAR+KR EA+KLLA+G+DP+E KK  K+A      + N F  +A EWH++K+ +WS  
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQ--MSLKNTFEAIAREWHQLKADRWSLR  118

Query  121  YASDILEAFDKDIFPHIGHRPIADIQPLELLEVLRLIEARGAMEKAKKVRQRCGEVFRYA  180
            Y  +I+++F+KDIFP IG RPIA+I+P+ LLE LR +E RGA+EK +KVRQRCGEVFRYA
Sbjct  119  YRDEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYA  178

Query  181  IVTGRAVYNPAPDLASAMQGHEAVHYPFLKASELPEFFTVLNAYTGSPIVllgahllilt  240
            IVTGRA YNPAPDLASA+     VH+PFL A+ELP+F+  L +YTGS I   ++++++LT
Sbjct  179  IVTGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLT  238

Query  241  glRTGELRAAEWREVDFDNAIWEIPKERMKMRRAHIVPLSKQALVYLKRLKELTGNYPLM  300
            G+RT ELR A W ++DF+  +WEIP E MKM+R+HIVPLS Q ++ +K+L  ++ + PL+
Sbjct  239  GVRTQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHPLV  298

Query  301  FPGRNDPSKFMSEASINQVFKRIGYGGRVTGHGFRHTMSTILHEKGFNSAWIETQLAHLD  360
            F GRNDP K +S  SINQ +  +GY GR+TGHGFRHTMSTILHE+GFNSAWIE QLAH+D
Sbjct  299  FIGRNDPRKPISKESINQAIELLGYKGRLTGHGFRHTMSTILHEQGFNSAWIEMQLAHVD  358

Query  361  KNSIRGIYNHAQYLDGRREMMQWYGDFINGLVA  393
            KNSIR+ YNHA YLDGRREMMQWY+D+I++L +
Sbjct  359  KNSIRDTYNHALYLDGRREMMQWYADYIDSLSS  391

148) YE105_C2844 in NC_015224


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  417 bits (1570),  Expect = 5e-118, Method: Compositional matrix adjust.
 Identities = 231/384 (61%), Positives = 299/384 (78%), Gaps = 0/384 (0%)

Query  1    MLLNDFKIRSAKPTDKAYTLNDGKGLSLIISPNGVKGWRFRYQFGGKAHMISFGVYGPVS  60
            M L D+K+++AKP DK+Y L DG G+ L+I+ NG K WR +Y+F+GK  M+S+GVY  V+
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   LADARRQREEAKSALANGTNPSDARKAEKIALKYPAKNTFEDIAREWHTSKLATWTPEYA  120
            LADAR +R EA+  LA G +P++A+K EKIA + + KNTFE IAREWH  K   W+  Y 
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  121  DTVIRGFDNNVFPYIGKRPIDQIAPLELLAVLQRIEKRGALELTGKIRRRCGEVFRYAVV  180
            D +I  F++++FPYIGKRPI +I P+ LL  L+++EKRGALE   K+R+RCGEVFRYA+V
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  181  TGRATYNPAPDLASALNRPKNGHYPFLTESELPEFIQALDNYKGSKQTKYATQLLMLTGV  240
            TGRA YNPAPDLASAL  PK+ H+PFLT +ELP+F++ L  Y GS  TK ATQ++MLTGV
Sbjct  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV  240

Query  241  RTIELRAAEWSEFDLDNALWEVPKERMKKRRPHLVPLSKQALAILEKLKVLTGNYKLVFP  300
            RT ELR A W ++D++  LWE+P E MK +RPH+VPLS Q + ++ +L  ++ +  LVF 
Sbjct  241  RTQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHPLVFI  300

Query  301  GRNDAGKPMSEASINKVIKMLGYHGRATGHGFRHTMSTILHEKGYNSAWIETQLAHVDKN  360
            GRND+ KP+S  SIN+ I +LGY GR TGHGFRHTMSTILHE+G+NSAWIE QLAHVDKN
Sbjct  301  GRNDPRKPISKESINQAIELLGYKGRLTGHGFRHTMSTILHEQGFNSAWIEMQLAHVDKN  360

Query  361  SIRGTYNHAQYLEGRREMLQWYGD  384
            SIR+TYNHA YL+GRREM+QWY+D
Sbjct  361  SIRDTYNHALYLDGRREMMQWYAD  384

149) ETAF_0741 in NC_017309


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  417 bits (1568),  Expect = 6e-118, Method: Compositional matrix adjust.
 Identities = 233/387 (61%), Positives = 311/387 (81%), Gaps = 0/387 (0%)

Query  1    MPLNDMQIRRAKPEAKAYTLGDGQGLSLLIEPNGSKSWRFRYRFAGKPKMISLGVYPTIT  60
            M+L D++++ AKP  K+Y L+DG G+ LLI+ NGSK WR +YRFAGK KM+S+GVYP +T
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   LadarsrrddarKLVAEGKNPSEVRKEQKIALQTESESAFEKIATEWHQMKSAKWSEGYA  120
            LADAR +R +ARKL+A G +P+E +KE+KIA Q    ++FE IA EWHQ+K+ +WS  Y 
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  121  SDIMEAFQNDIFPYVGTRPVGEIKPLELLNVLRKIEKRGALEKMRKVRQRCSEVFRYAIA  180
             +I+++F++DIFPY+G RP++EIKP+ LL+ LRK+EKRGALEKMRKVRQRC+EVFRYAI 
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  181  TGRAEFNPAADLSSALDVHQSNHFPFLKADEIPDFLRALDGYTGSQLVLIATKLLMITGV  240
            TGRA++NPA+DL+SAL   +  HFPFL A+E+P+FL  L GYTGS +   AT+++M+TGV
Sbjct  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV  240

Query  241  RTIELRAALWSEFDLDNAIWEIPAERMKMRKAHLVPLSTQALDLLNELKIMTGNYRYVFP  300
            RT ELR A W ++D++  +WEIPAE MKM+++H+VPLS Q + L+++L  ++ +   VF 
Sbjct  241  RTQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHPLVFI  300

Query  301  GRNDPYKPMSEASINQLIKRIGYGGRLTGHGFRHTFSTILHEAGFNSIWIELQLAHVDKN  360
            GRNDP KP+S  SINQ I  +GY GRLTGHGFRHT STILHE GFNS WIE+QLAHVDKN
Sbjct  301  GRNDPRKPISKESINQAIELLGYKGRLTGHGFRHTMSTILHEQGFNSAWIEMQLAHVDKN  360

Query  361  SIRGIYNHANYIESRKDMMQWYSDKIN  387
            SIR+ YNHA Y+++R++MMQWY+D I+
Sbjct  361  SIRDTYNHALYLDGRREMMQWYADYID  387

150) ECL_01076 in NC_014121


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  416 bits (1567),  Expect = 8e-118, Method: Compositional matrix adjust.
 Identities = 242/391 (62%), Positives = 308/391 (79%), Gaps = 2/391 (0%)

Query  1    MMLNARKVEAAKGKEKSYKLSDGGGLYLQVEPNGSRYWRMKYRFAGKEKRLSFGVYPTVS  60
            M L   KV +AK K+K+YKL+DGGG+YL ++ NGS+YWRMKYRFAGKEK LS+GVYP V+
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   LADARQKREDAKKLLAAGEDPGEVkkakkhaltaatEILNPFREVALEWHKMKSPKWSEG  120
            LADAR+KR +A+KLLAAG DPGE KK  K A      + N F  +A EWH++K+ +WS  
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQM--SLKNTFEAIAREWHQLKADRWSLR  118

Query  121  YASDIIEAFEKDIFPHIGHRPIADIKPLELLEVLRLIEARGAMEKAKKVRQRCGEVFRYA  180
            Y  +II++FEKDIFP IG RPIA+IKP+ LLE LR +E RGA+EK +KVRQRCGEVFRYA
Sbjct  119  YRDEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYA  178

Query  181  IVTGRAIYNPAPDLASAMQGHEAVHYPFLKVNELPEFFTALNAYSGSPIVllgahllilt  240
            IVTGRA YNPAPDLASA+     VH+PFL  NELP+F+  L +Y+GS I   ++++++LT
Sbjct  179  IVTGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLT  238

Query  241  glRTGELRAAEWREVDFDNAVWEIPKERMKMRRTHIVPLSKQALVHLGRLKELTGNYPLM  300
            G+RT ELR A W ++DF+  +WEIP E MKM+R HIVPLS Q ++ + +L  ++ + PL+
Sbjct  239  GVRTQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHPLV  298

Query  301  FPGRNDPSKFMSEASINQVFKRIGYAGRVTGHGFRHTMSTILHEKGFNSAWIETQLAHLD  360
            F GRNDP K +S  SINQ +  +GY GR+TGHGFRHTMSTILHE+GFNSAWIE QLAH+D
Sbjct  299  FIGRNDPRKPISKESINQAIELLGYKGRLTGHGFRHTMSTILHEQGFNSAWIEMQLAHVD  358

Query  361  KNSIRGIYNHAQYIEGRREMMQWYADFLEGL  391
            KNSIR+ YNHA Y++GRREMMQWYAD++++L
Sbjct  359  KNSIRDTYNHALYLDGRREMMQWYADYIDSL  389

151) Pat9b_1012 in NC_014837


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  410 bits (1541),  Expect = 9e-116, Method: Compositional matrix adjust.
 Identities = 229/389 (59%), Positives = 303/389 (78%), Gaps = 0/389 (0%)

Query  1    MKLNVRQIETAKPKDKAWKLADGGGLYLEIFPTGGKSWRLKYRFAGKEKRVVFGLYPAVT  60
            M L   ++ TAKPKDK+ KLADGGG+YL I   G+K WR+KYRFAGKEK + +G+YP VT
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   LAQARGKREDAKRILAAGGDPGAAKQEAKQAKILAVNNNFEAMAREWHGTKRANWSQGYA  120
            LA+AR KR +A+++LAAGGDPG AK+E K A+ ++++N FEA+AREWH  K   WS  Y 
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  121  DDILEYLRKDIFPHIGKMPVTEITPMLMLAVLRKMEQRGVLDKLKKTRQACSQIYVYAIV  180
            D+I++ + KDIFP IGK P++EI PM +L  LRKME+RG L+K++K RQ C++++ YAIV
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  181  TGRAEYNPVSELAGALKSPKQKHFPHLLNNEIGAFLRALCGYSGSKMTQYATRLLMLTGT  240
            TGRA+YNP ++LA+AL +PK+ HFP L  NE+  FL  L GY+GS +T+ AT+++MLTG 
Sbjct  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV  240

Query  241  RTIELRAAEWREFDLSKGLWEIPEGRMKMRRKHSVPLSRQAVELLEEIQQLTGRGKYVFP  300
            RT ELR A W ++D+   LWEIP   MKM+R H VPLS Q + L+ +++ ++ +   VF 
Sbjct  241  RTQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHPLVFI  300

Query  301  GRSNAGKPMSEATINQVIKRVGYDGRATGHGFRHTMSTVLHEQGYNSAWIEVQLAHVDKN  360
            GR+++ KP+S  +INQ I  +GY GR TGHGFRHTMST+LHEQG+NSAWIE+QLAHVDKN
Sbjct  301  GRNDPRKPISKESINQAIELLGYKGRLTGHGFRHTMSTILHEQGFNSAWIEMQLAHVDKN  360

Query  361  SIRGTYNHAQYLDGRREMLQWYADYLDGL  389
            SIR+TYNHA YLDGRREM+QWYADY+D+L
Sbjct  361  SIRDTYNHALYLDGRREMMQWYADYIDSL  389

152) EAE_24695 in NC_015663


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  408 bits (1537),  Expect = 2e-115, Method: Compositional matrix adjust.
 Identities = 247/393 (63%), Positives = 312/393 (80%), Gaps = 0/393 (0%)

Query  1    MTLNARQVETAKPRDKAYKLADGGGLYLMVNTNGSKYWRMKYRFAGKEKKLSFGIYPDIS  60
            M+L   +V TAKP+DK+YKLADGGG+YL++NTNGSKYWRMKYRFAGKEK LS+G+YPD++
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   LAEARTKRDEARKLLANDKDPGEVKKATLLAKKLSVTNTFEAIALEWYSAKVSGWSKSYA  120
            LA+AR KR EARKLLA + DPGE KK   +A+++S+ NTFEAIA EW   K   WS  Y 
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  121  DYVKRAFKNNVFPYLGSQPVNEIKPLALLSVLQKMEKRGATELASKVRQRCNEVFRYAIV  180
            D +  +F +++FPY+G +P+ EIKP+ LL  L+KMEKRGA E   KVRQRC EVFRYAIV
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  181  TGRAEYNPAADLGSALQGHEKQHYPFLTAAELPDFLQKLSNYSGSlitllatrllmltgl  240
            TGRA+YNPA+DL+SAL    K H+PFLTA ELP+FL+ L+ Y+GS+IT  AT+++MLTG+
Sbjct  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV  240

Query  241  rtVELRLAEWREIDFDNRIWEIPKTRMKMKRPHVVPlsaqslsalrqlKVLTGNYKLIFA  300
            RT ELR+A W +IDF+ ++WEIP   MKMKRPH+VPLS Q +  ++QL  ++ +  L+F 
Sbjct  241  RTQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHPLVFI  300

Query  301  GRNDVNIAMSEASINMVIKRIGYDKRATGHGFRHTMSTILHEQGFNSAWIETQLAHVDKN  360
            GRND   ++S  SIN  I  +GY  R TGHGFRHTMSTILHEQGFNSAWIE QLAHVDKN
Sbjct  301  GRNDPRKPISKESINQAIELLGYKGRLTGHGFRHTMSTILHEQGFNSAWIEMQLAHVDKN  360

Query  361  SIRGTYNHAQYLEGRREMMQWYADFMDAFQGGD  393
            SIR+TYNHA YL+GRREMMQWYAD++D++ + +
Sbjct  361  SIRDTYNHALYLDGRREMMQWYADYIDSLSSRE  393

153) CSSP291_04405 in NC_020260


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  407 bits (1530),  Expect = 7e-115, Method: Compositional matrix adjust.
 Identities = 245/389 (63%), Positives = 309/389 (80%), Gaps = 0/389 (0%)

Query  1    MPLNARQVETAKPRDKAYKLADGGGLYLMVNTNGSKYWRMKYRFAGKEKKLSFGTYPDIS  60
            M+L   +V TAKP+DK+YKLADGGG+YL++NTNGSKYWRMKYRFAGKEK LS+G YPD++
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   LAEARTKRDEARKTLANDKDPGEVKKAELLAQKLSVTNTFEAIAVEWYNAKVSGWSKNYA  120
            LA+AR KR EARK LA + DPGE KK E +AQ++S+ NTFEAIA EW + K   WS  Y 
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  121  DYVNRAFKNNVFPFVGSQPVNEIKPLELLSVLQRMEKRGAPELASKVRQRCSEVFRYAIV  180
            D +  +F +++FP++G +P+ EIKP+ LL  L++MEKRGA E   KVRQRC+EVFRYAIV
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  181  TGRAEYNPAADLGSALQGYEKQHYPFLTAAELPEFLQKLSQYTGSlvtllatrllmltgl  240
            TGRA+YNPA+DL+SAL    K H+PFLTA ELP+FL+ L+ YTGS++T  AT+++MLTG+
Sbjct  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV  240

Query  241  rtvELRMAEWSEIDFENHIWEIPKSRMKMRRPHIVPlsaqslaalrqlkqlTGTYQFIFA  300
            RT ELR A W +IDFE  +WEIP   MKM+RPHIVPLS Q +  ++QL  ++    ++F 
Sbjct  241  RTQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHPLVFI  300

Query  301  GRNDVNKPMSEASINMVIKRIGYDKRATGHGFRHTMSTILHEEGFNTAWIETQLAHVDKN  360
            GRND  KP+S  SIN  I  +GY  R TGHGFRHTMSTILHE+GFN+AWIE QLAHVDKN
Sbjct  301  GRNDPRKPISKESINQAIELLGYKGRLTGHGFRHTMSTILHEQGFNSAWIEMQLAHVDKN  360

Query  361  AIRGTYNHAQYLEGRKEMMQWYGDYLDGL  389
            +IR+TYNHA YL+GR+EMMQWY+DY+D+L
Sbjct  361  SIRDTYNHALYLDGRREMMQWYADYIDSL  389

154) ECL_03688 in NC_014121


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  407 bits (1530),  Expect = 7e-115, Method: Compositional matrix adjust.
 Identities = 245/389 (63%), Positives = 309/389 (80%), Gaps = 0/389 (0%)

Query  1    MPLNARQVETAKPRDKAYKLADGGGLYLMVNTNGSKYWRMKYRFAGKEKKLSFGTYPDIS  60
            M+L   +V TAKP+DK+YKLADGGG+YL++NTNGSKYWRMKYRFAGKEK LS+G YPD++
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   LAEARTKRDEARKTLANDKDPGEVKKAELLAQKLSVTNTFEAIAVEWYNAKVSGWSKNYA  120
            LA+AR KR EARK LA + DPGE KK E +AQ++S+ NTFEAIA EW + K   WS  Y 
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  121  DYVNRAFKNNVFPFVGSQPVNEIKPLELLSVLQRMEKRGAPELASKVRQRCSEVFRYAIV  180
            D +  +F +++FP++G +P+ EIKP+ LL  L++MEKRGA E   KVRQRC+EVFRYAIV
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  181  TGRAEYNPAADLGSALQGYEKQHYPFLTAAELPEFLQKLSQYTGSlvtllatrllmltgl  240
            TGRA+YNPA+DL+SAL    K H+PFLTA ELP+FL+ L+ YTGS++T  AT+++MLTG+
Sbjct  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV  240

Query  241  rtvELRMAEWSEIDFENHIWEIPKSRMKMRRPHIVPlsaqslaalrqlkqlTGTYQFIFA  300
            RT ELR A W +IDFE  +WEIP   MKM+RPHIVPLS Q +  ++QL  ++    ++F 
Sbjct  241  RTQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHPLVFI  300

Query  301  GRNDVNKPMSEASINMVIKRIGYDKRATGHGFRHTMSTILHEEGFNTAWIETQLAHVDKN  360
            GRND  KP+S  SIN  I  +GY  R TGHGFRHTMSTILHE+GFN+AWIE QLAHVDKN
Sbjct  301  GRNDPRKPISKESINQAIELLGYKGRLTGHGFRHTMSTILHEQGFNSAWIEMQLAHVDKN  360

Query  361  AIRGTYNHAQYLEGRKEMMQWYGDYLDGL  389
            +IR+TYNHA YL+GR+EMMQWY+DY+D+L
Sbjct  361  SIRDTYNHALYLDGRREMMQWYADYIDSL  389

155) SU5_02989 in NC_017623


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  402 bits (1513),  Expect = 1e-113, Method: Compositional matrix adjust.
 Identities = 228/360 (64%), Positives = 285/360 (80%), Gaps = 0/360 (0%)

Query  2    GLSLLIDTTGSKGWRFRYRFAGKPKMISFGVYGDVSLAQARAKRDEARSMLAKGINPSEA  61
            G+ LLI+T GSK WR +YRFAGK KM+S+GVY DV+LA+AR KR EAR +LA G +P+EA
Sbjct  25   GMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVTLADAREKRSEARKLLAAGGDPGEA  84

Query  62   RKANKIALQFAHENSFESVAREWHSSKKTTWSEGYAKEVLNCMERDIFPFIGQRPIEQIE  121
            +K +KIA Q +  N+FE++AREWH  K   WS  Y  E+++  E+DIFP+IG+RPI +I 
Sbjct  85   KKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYRDEIIDTFEKDIFPYIGKRPIAEIK  144

Query  122  PLELLTVLQKIEKRGALEQTSKIRRRCGEVLRYAVATGRAKYNFAPDLAIALNKPKTQHF  181
            P+ LL  L+K+EKRGALE+  K+R+RCGEV+RYA+ TGRA YN APDLA AL  PK  HF
Sbjct  145  PMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIVTGRADYNPAPDLASALATPKKVHF  204

Query  182  PFLTESELPEFVNALDNYQGSLVTKYATQLLMLTGVRTIELRAAEWAEFDLDNALWEIPK  241
            PFLT +ELP+F+N L  Y GS++TK ATQ++MLTGVRT ELR A W ++D++  LWEIP 
Sbjct  205  PFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGVRTQELRFARWEDIDFETKLWEIPA  264

Query  242  ERMKKRRPHLVPLSTQAISILKKLQEITGNYSLVFPGRNDVRKPMSEASINKVIKLLGYH  301
            E MK +RPH+VPLS Q I ++K+L+ I+ + +LVF GRND RKP+S  SIN+ I LLGY 
Sbjct  265  EVMKMKRPHIVPLSEQVIMLFKQLEPISKHHPLVFIGRNDPRKPISKESINQAIELLGYK  324

Query  302  GRLTGHGFRHTMSTILHELGFESAWIEMQLAHVDKNSIRGTYNHAQYLENRRKMMQIYSD  361
            GRLTGHGFRHTMSTILHE GF+SAWIEMQLAHVDKNSIR+TYNHA YL+ RR MMQ Y+D
Sbjct  325  GRLTGHGFRHTMSTILHEQGFNSAWIEMQLAHVDKNSIRDTYNHALYLDGRREMMQWYAD  384

156) SEEH1578_01295 in NC_021810


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  400 bits (1504),  Expect = 6e-113, Method: Compositional matrix adjust.
 Identities = 220/356 (62%), Positives = 285/356 (81%), Gaps = 0/356 (0%)

Query  1    MKLTARQVETAKPKEKPYKLADGGGLYLLVNPNGKRYWRLKYRSLGKEKLLAIGVYPDVF  60
            M LT  +V TAKPK+KPYKLADGGG+YLL+N NG +YWR+KYR  GKEK+L+IGVYPDV 
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   LAEARSKREDAKRTLAAGNDPSLERKIEKLSRQQDAENSFEAITREWYQRRYDRWSVSCR  120
            LA+AR KR +A++ LAAG DP+  +K EK+++Q    N+FEAI+REW Q + DRWS+  R
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  121  EEMLRTFEKDVFPYIGHRPIKDIKPMELLAVLSKIEARRATEKVRKVRQRCGEVWKYAVV  180
            +E++ TFEKD+FPYIG RPI +IKPM LL  L K+E R A EK+RKVRQRCGEV +YA+V
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  181  TGRAEYNPAPDLASAVIPHEKEHYAFLTQDELPEFLRTLNTYAGSVLVKIAMQLLILTGV  240
            TGRA+YNPAPDLASA+    K H++FLT +ELP+FL  L  Y+GS++ K A Q+++LTGV
Sbjct  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV  240

Query  241  RLGELRQAEWQEFDFEKKVWNVPAERMKMRRPHLVPLSSQAIDLLNQLKPMTGAGALLFP  300
            R  ELR A W+++DFE K+W++PAE MKM+RPH+VPLS Q I L++QL P++   +L+F 
Sbjct  241  RTQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHPLVFI  300

Query  301  GRNNPKKPMSDMALTVLVRRIGYAGRVTGHGFRHTMSTILHEQGFNSAWIEIQLAH  356
            GRN+P+KP+S  ++   +  +GY GR+TGHGFRHTMSTILHEQGFNSAWIE+QLAH
Sbjct  301  GRNDPRKPISKESINQAIELLGYKGRLTGHGFRHTMSTILHEQGFNSAWIEMQLAH  356

157) SU5_03538 in NC_017623


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  400 bits (1504),  Expect = 6e-113, Method: Compositional matrix adjust.
 Identities = 220/356 (62%), Positives = 285/356 (81%), Gaps = 0/356 (0%)

Query  1    MKLTARQVETAKPKEKPYKLADGGGLYLLVNPNGKRYWRLKYRSLGKEKLLAIGVYPDVF  60
            M LT  +V TAKPK+KPYKLADGGG+YLL+N NG +YWR+KYR  GKEK+L+IGVYPDV 
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   LAEARSKREDAKRTLAAGNDPSLERKIEKLSRQQDAENSFEAITREWYQRRYDRWSVSCR  120
            LA+AR KR +A++ LAAG DP+  +K EK+++Q    N+FEAI+REW Q + DRWS+  R
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  121  EEMLRTFEKDVFPYIGHRPIKDIKPMELLAVLSKIEARRATEKVRKVRQRCGEVWKYAVV  180
            +E++ TFEKD+FPYIG RPI +IKPM LL  L K+E R A EK+RKVRQRCGEV +YA+V
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  181  TGRAEYNPAPDLASAVIPHEKEHYAFLTQDELPEFLRTLNTYAGSVLVKIAMQLLILTGV  240
            TGRA+YNPAPDLASA+    K H++FLT +ELP+FL  L  Y+GS++ K A Q+++LTGV
Sbjct  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV  240

Query  241  RLGELRQAEWQEFDFEKKVWNVPAERMKMRRPHLVPLSSQAIDLLNQLKPMTGAGALLFP  300
            R  ELR A W+++DFE K+W++PAE MKM+RPH+VPLS Q I L++QL P++   +L+F 
Sbjct  241  RTQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHPLVFI  300

Query  301  GRNNPKKPMSDMALTVLVRRIGYAGRVTGHGFRHTMSTILHEQGFNSAWIEIQLAH  356
            GRN+P+KP+S  ++   +  +GY GR+TGHGFRHTMSTILHEQGFNSAWIE+QLAH
Sbjct  301  GRNDPRKPISKESINQAIELLGYKGRLTGHGFRHTMSTILHEQGFNSAWIEMQLAH  356

158) CFSAN002069_16980 in NC_021812


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  400 bits (1504),  Expect = 6e-113, Method: Compositional matrix adjust.
 Identities = 220/356 (62%), Positives = 285/356 (81%), Gaps = 0/356 (0%)

Query  1    MKLTARQVETAKPKEKPYKLADGGGLYLLVNPNGKRYWRLKYRSLGKEKLLAIGVYPDVF  60
            M LT  +V TAKPK+KPYKLADGGG+YLL+N NG +YWR+KYR  GKEK+L+IGVYPDV 
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   LAEARSKREDAKRTLAAGNDPSLERKIEKLSRQQDAENSFEAITREWYQRRYDRWSVSCR  120
            LA+AR KR +A++ LAAG DP+  +K EK+++Q    N+FEAI+REW Q + DRWS+  R
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  121  EEMLRTFEKDVFPYIGHRPIKDIKPMELLAVLSKIEARRATEKVRKVRQRCGEVWKYAVV  180
            +E++ TFEKD+FPYIG RPI +IKPM LL  L K+E R A EK+RKVRQRCGEV +YA+V
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  181  TGRAEYNPAPDLASAVIPHEKEHYAFLTQDELPEFLRTLNTYAGSVLVKIAMQLLILTGV  240
            TGRA+YNPAPDLASA+    K H++FLT +ELP+FL  L  Y+GS++ K A Q+++LTGV
Sbjct  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV  240

Query  241  RLGELRQAEWQEFDFEKKVWNVPAERMKMRRPHLVPLSSQAIDLLNQLKPMTGAGALLFP  300
            R  ELR A W+++DFE K+W++PAE MKM+RPH+VPLS Q I L++QL P++   +L+F 
Sbjct  241  RTQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHPLVFI  300

Query  301  GRNNPKKPMSDMALTVLVRRIGYAGRVTGHGFRHTMSTILHEQGFNSAWIEIQLAH  356
            GRN+P+KP+S  ++   +  +GY GR+TGHGFRHTMSTILHEQGFNSAWIE+QLAH
Sbjct  301  GRNDPRKPISKESINQAIELLGYKGRLTGHGFRHTMSTILHEQGFNSAWIEMQLAH  356

159) SeHA_C3266 in NC_011083


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  400 bits (1504),  Expect = 6e-113, Method: Compositional matrix adjust.
 Identities = 220/356 (62%), Positives = 285/356 (81%), Gaps = 0/356 (0%)

Query  1    MKLTARQVETAKPKEKPYKLADGGGLYLLVNPNGKRYWRLKYRSLGKEKLLAIGVYPDVF  60
            M LT  +V TAKPK+KPYKLADGGG+YLL+N NG +YWR+KYR  GKEK+L+IGVYPDV 
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   LAEARSKREDAKRTLAAGNDPSLERKIEKLSRQQDAENSFEAITREWYQRRYDRWSVSCR  120
            LA+AR KR +A++ LAAG DP+  +K EK+++Q    N+FEAI+REW Q + DRWS+  R
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  121  EEMLRTFEKDVFPYIGHRPIKDIKPMELLAVLSKIEARRATEKVRKVRQRCGEVWKYAVV  180
            +E++ TFEKD+FPYIG RPI +IKPM LL  L K+E R A EK+RKVRQRCGEV +YA+V
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  181  TGRAEYNPAPDLASAVIPHEKEHYAFLTQDELPEFLRTLNTYAGSVLVKIAMQLLILTGV  240
            TGRA+YNPAPDLASA+    K H++FLT +ELP+FL  L  Y+GS++ K A Q+++LTGV
Sbjct  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV  240

Query  241  RLGELRQAEWQEFDFEKKVWNVPAERMKMRRPHLVPLSSQAIDLLNQLKPMTGAGALLFP  300
            R  ELR A W+++DFE K+W++PAE MKM+RPH+VPLS Q I L++QL P++   +L+F 
Sbjct  241  RTQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHPLVFI  300

Query  301  GRNNPKKPMSDMALTVLVRRIGYAGRVTGHGFRHTMSTILHEQGFNSAWIEIQLAH  356
            GRN+P+KP+S  ++   +  +GY GR+TGHGFRHTMSTILHEQGFNSAWIE+QLAH
Sbjct  301  GRNDPRKPISKESINQAIELLGYKGRLTGHGFRHTMSTILHEQGFNSAWIEMQLAH  356

160) intS in NC_014228


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  399 bits (1502),  Expect = 1e-112, Method: Compositional matrix adjust.
 Identities = 220/372 (60%), Positives = 293/372 (79%), Gaps = 0/372 (0%)

Query  1    MKLTARQVETVKPQEKDFKLSDGGGLYLLVKVNGSKYWRLKYRIAGKEKLLAIGTFPLVT  60
            M LT  +V T KP++K +KL+DGGG+YLL++ NGSKYWR+KYR+AGKEK+L+IG +P VT
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   LAEARRKRDEAKKLIAEGIDPNQDKKQKKLAAQGEISNTFESIAREWYEGRKDRWSVGYR  120
            LA+AR KR EA+KL+A G DP + KK+ K+A Q  + NTFE+IAREW + + DRWS+ YR
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  121  EDMMDAFEKDVFPYIGHRPIAEIKPLELLDLLSIMEKRGVTDKLKKVRQRCGEVWTYAII  180
            ++++D+FEKD+FPYIG RPIAEIKP+ LL+ L  MEKRG  +K++KVRQRCGEV  YAI+
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  181  TGRAEYNPAPDLASAFIPHQREHYAHLSVDELPEFLRSIDKYMGSQIVRTALRMLILTGV  240
            TGRA+YNPAPDLASA+   ++ H++ L+ +ELP+FL  +  Y GS I +TA ++++LTGV
Sbjct  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV  240

Query  241  RPGELRKAEWSEIDLDKAVWTIPAEKMKMRCTHVVPLSEQVINLLKQIQPISGNYQYVFP  300
            R  ELR A W +ID++  +W IPAE MKM+  H+VPLSEQVI L+KQ++PIS +   VF 
Sbjct  241  RTQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHPLVFI  300

Query  301  SRTDYRKHISDMAINTMIRRMGYSGRATGHGFRHTMSTILHDQDYNTEWVEKQLAHVDKN  360
            +R D RK IS  +IN  I  +GY GR TGHGFRHTMSTILH+Q++N+ W+E QLAHVDKN
Sbjct  301  GRNDPRKPISKESINQAIELLGYKGRLTGHGFRHTMSTILHEQGFNSAWIEMQLAHVDKN  360

Query  361  SIRGTYSRIIIL  372
            SIR+TY++ + L
Sbjct  361  SIRDTYNHALYL  372

161) PAU_01009 in NC_012962


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  394 bits (1481),  Expect = 5e-111, Method: Compositional matrix adjust.
 Identities = 242/397 (61%), Positives = 316/397 (80%), Gaps = 3/397 (0%)

Query  1    MKLTARQIDTAKPKDKSYKLSDGGGMYLEIFPNGSKCWRLKYRFAGKEKRLAFGTYPTVT  60
            M LT  ++ TAKPKDK+YKL+DGGGMYL I  NGSK WR+KYRFAGKEK L++G YP VT
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   LaearkkredakkILANGNDPGLVKRQEKREKALIINNSFEKIALEWHTYKLPNWSKGYA  120
            LA+AR KR +A+K+LA G DPG  K++EK  + + ++N+FE IA EWH  K   WS  Y 
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  121  EDLLEGFTKDIFPFIGKHAITDIKPLDMLTVLRKMEQRGVLDKLKKIRQACNQVFRYAIV  180
            +++++ F KDIFP+IGK++I++IKP+ +L  LRKME+RG L+K++K+RQ C +VFRYAIV
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  181  TGRAEYNPTAELAGALATPKAKHFPHLNVDELPAFLQALSFYSGSKITQIAtklllltgl  240
            TGRA+YNP+++LA+ALATPK  HFP L  +ELP FL+ L+ Y+GS IT+ AT++++LTG+
Sbjct  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV  240

Query  241  rtielRASTWTEIDFDKAIWEIPQERMKMRRPHIVPLSEQalallkelaaITGRFNFVFH  300
            RT ELR + W +IDF+  +WEIP E MKM+RPHIVPLSEQ + L+K+L +I+ +  +VF 
Sbjct  241  RTQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHPLVFI  300

Query  301  GRNDASKPMSEAAINAINQVLKRIGYDGRATGHGFRHTMSTILHEQGYNTAWIETQLAHV  360
            GRND+ KP+S  +IN   ++L   GY GR TGHGFRHTMSTILHEQG+N+AWIE QLAHV
Sbjct  301  GRNDPRKPISKESINQAIELL---GYKGRLTGHGFRHTMSTILHEQGFNSAWIEMQLAHV  357

Query  361  DKNSIRGTYNHAQYLDGRREMLQWYADYMDMLERGEN  397
            DKNSIR+TYNHA YLDGRREM+QWYADY+D L   E+
Sbjct  358  DKNSIRDTYNHALYLDGRREMMQWYADYIDSLSSRES  394

162) ENC_24500 in NC_021046


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  393 bits (1480),  Expect = 6e-111, Method: Compositional matrix adjust.
 Identities = 225/389 (58%), Positives = 304/389 (79%), Gaps = 2/389 (0%)

Query  1    MKLNARQVETAKPAEKDYKLPDGNGLILLVKTSGAKYWRYRYTFAGKEKMLALGVYPAVS  60
            M L   +V TAKP +K YKL+DG G+ LL++T+G+KYWR +Y FAGKEKML++GVYP V+
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   LaaarekrdearrNVAAGVDPVKAKSHVaaaaaKTI--TFKEIATEWHEFKKPRWSPGYA  118
            LA AREKR EAR+ +AAG DP  AK +   A   ++  TF  IA EWH++K  RWS  Y 
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  119  SDILEAFNKDIFPAVGKLPVAEIEPVQMLTALRKIENRGATEKAAKTRRWCGEVFSYAVA  178
             +I+++F+KDIFP +GK P+AEI P+++L ALRK+E+RGA EK  K R++CGEVF YA+ 
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  179  TGRAKYNPVSELNSAMTGHKGESFPFLTAEELPDFLAALESYKGSPLPRLGLQIMMLAGL  238
            TGRA YNP ++L SA++  K   FPFLTA+ELP+FL  L +Y GS + + + QI+ML+G+
Sbjct  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV  240

Query  239  RTYELRHSKWEWVDFDNQLWEIPAEFMKTDRPHLVPLSEQLVVLLKELHGLTGRYVNMFP  298
            RT ELR ++WE +DF+ +LWEIPAE MK  RPH+VPLSEQ+++L+K+L+ ++ +   +F 
Sbjct  241  RTQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHPLVFI  300

Query  299  GRNDPSKVMSENTINRMIHTLGYKGRVVGHGFRHTFSTILNDKGFNSDWVELQIAHVDKN  358
            GRNDP K +S ++IN+ I+ LGYKGR+ GHGFRHT STIL+++GFNS W+E+Q+AHVDKN
Sbjct  301  GRNDPRKPISKESINQAIELLGYKGRLTGHGFRHTMSTILHEQGFNSAWIEMQLAHVDKN  360

Query  359  NIRGVYNHALYMEGRREMMQWYADYIDQL  387
            +IR+ YNHALY++GRREMMQWYADYID L
Sbjct  361  SIRDTYNHALYLDGRREMMQWYADYIDSL  389

163) CFSAN001992_09575 in NC_020307


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  392 bits (1474),  Expect = 2e-110, Method: Compositional matrix adjust.
 Identities = 223/389 (58%), Positives = 303/389 (78%), Gaps = 2/389 (0%)

Query  1    MKLNARQVETAKPGEKDYKLPDGNGLILLVKTSGAKYWRYRYTFAGREKMLALGVYPAVS  60
            M L   +V TAKP +K YKL+DG G+ LL++T+G+KYWR +Y FAG+EKML++GVYP V+
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   LaaarekrdearrNVAAGVDPVKVKSHVaaaaaNSI--TFKDIAIEWHEFKKPRWSPGYA  118
            LA AREKR EAR+ +AAG DP   K +   A   S+  TF  IA EWH++K  RWS  Y 
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  119  SDILEAFNKDIFPAVGKLPVAEIEPVQMLTALRKIENRGATEKAAKTRRWCGEVFSYAVA  178
             +I+++F+KDIFP +GK P+AEI P+++L ALRK+E+RGA EK  K R++CGEVF YA+ 
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  179  TGRAKYNPVSELNSAMTGHKGESFPFLTAEELPDFLAALEGYKGSPLPRLGLQIMMLAGL  238
            TGRA YNP ++L SA++  K   FPFLTA+ELP+FL  L GY GS + + + QI+ML+G+
Sbjct  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV  240

Query  239  RTYELRHSKWEWVDFDNRLWEIPAEFMKMDRPHLVPLSDQLVVLLKELHGLTGRFVNMFP  298
            RT ELR ++WE +DF+ +LWEIPAE MKM RPH+VPLS+Q+++L+K+L+ ++ +   +F 
Sbjct  241  RTQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHPLVFI  300

Query  299  GRNDPSKVMSENTINRMIHTLGYKGRVVGHGFRHTFSTILNDRGFNSDWVELQIAHVDKN  358
            GRNDP K +S ++IN+ I+ LGYKGR+ GHGFRHT STIL+++GFNS W+E+Q+AHVDKN
Sbjct  301  GRNDPRKPISKESINQAIELLGYKGRLTGHGFRHTMSTILHEQGFNSAWIEMQLAHVDKN  360

Query  359  NIRGVYNHALYMEGRRGMMQWYADFIDQL  387
            +IR+ YNHALY++GRR MMQWYAD+ID L
Sbjct  361  SIRDTYNHALYLDGRREMMQWYADYIDSL  389

164) ECA3460 in NC_004547


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  390 bits (1468),  Expect = 5e-110, Method: Compositional matrix adjust.
 Identities = 211/367 (58%), Positives = 288/367 (79%), Gaps = 0/367 (0%)

Query  37   IGDGLGLSLLIEPTGSKSWRFRYRFGGKPKMISFGAYPLVSLAEARKKRDEARKQVLDGI  96
            ++DG G+ LLI+  GSK WR +YRF+GK KM+S+G YP V+LA+AR KR EARK +  G 
Sbjct  20   LADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVTLADAREKRSEARKLLAAGG  79

Query  97   NPSEHRKAQKLNLMSESENTFETIAREWHTMKSVCWSVGYASDIMEAFRNDIFPYVGKRS  156
            +P+E +K +K+       NTFE+IAREWH +K+  WS+ Y  +I+++F +DIFPY+GKR+
Sbjct  80   DPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYRDEIIDTFEKDIFPYIGKRP  139

Query  157  IAEVKPLELLNVMRKMEKRGALEKMKKVRQRCSEVFRYAIATGRAEYNPAADLSSALEVH  216
            IAE+KP+ LL+ +RKMEKRGALEKM+KVRQRC+EVFRYAI TGRA+YNPA+DL+SAL   
Sbjct  140  IAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIVTGRADYNPAPDLASALATP  199

Query  217  QSHHFPFLKADEIPDFLRALEGYTGSKLVRIATKLLLITGVRTIELRAALWSEFDLGNAI  276
            +  HFPFL A+E+P+FL  L GYTGS + + AT+++++TGVRT ELR A W ++D+   +
Sbjct  200  KKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGVRTQELRFARWEDIDFETKL  259

Query  277  WEIPEERMKKRRAHLVPLSTQALDLLNELKIMTGNYRYVFPGRNNPNKPMSEASINQVIK  336
            WEIP E MK +R+H+VPLS Q + L+++L  ++ +   VF GRN+P KP+S  SINQ I 
Sbjct  260  WEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHPLVFIGRNDPRKPISKESINQAIE  319

Query  337  RIGFGGEVTGHGFRHMLSTILHEEGFDSSFIEIQLAHVDRNSIRGTYNHAQYLEKRRHMM  396
             +G+ G +TGHGFRH +STILHE+GF+S+ IE+QLAHVD+NSIR+TYNHA YL+ RR+MM
Sbjct  320  LLGYKGRLTGHGFRHTMSTILHEQGFNSAWIEMQLAHVDKNSIRDTYNHALYLDGRREMM  379

Query  397  QYYSDYV  403
            Q Y+DY+
Sbjct  380  QWYADYI  386

165) PputGB1_0681 in NC_010322


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  383 bits (1440),  Expect = 8e-108, Method: Compositional matrix adjust.
 Identities = 205/390 (53%), Positives = 292/390 (75%), Gaps = 0/390 (0%)

Query  1    MPLTALQVKNAAPRERDYGLADGGGLFLWIRAAGGKSWRFRFRLDGKQSHISLGTVDKVT  60
            M+LT ++VK A P+++ Y LADGGG++L I + G+K WR ++R+ GK+  +S+G    VT
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   LAQARQLASESRQLVAQGRHPGLERKVARAQAAISRANTFKSLALEWHQHKSQRWSVGYA  120
            LA+AR+  SE+R+L+A G +PG  +K  +    +S  NTF ++A EWHQ K++RWS+ Y 
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  121  NDVMEAFELDIFPLLGSLPLTDIKPMQWLQVFRRIESRGALEKLRKVRQRCQEVYRFAIA  180
            ++++++FE DIFP +G  P+++IKPM+ L+ +R++E RGALEK+RKVRQRC EV+R+AI 
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  181  TGRAEYNPISDIGGALQTPTSRHYPFLPIAELPELIRSFQACPGHDVVKIATRLLILTGV  240
            TGRA+YNP +D+++AL TP   H+PFL   ELP+++  + +  G  + K AT++++LTGV
Sbjct  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV  240

Query  241  RTAELRGALWSEFDLKDALWQIPASRMKMRRAHLVPLSKQAVAALSELEGITGGYTLAFP  300
            RT ELR A W ++D+   LW+IPA  MKM+R+H+VPLS Q +  + +LE I+    L F 
Sbjct  241  RTQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHPLVFI  300

Query  301  GRNDPAKPMSEAAINQLLKRSGYDGRATGHGFRHTMSTTLHEQGYRSEWVETQLAHVDKN  360
            GRNDP KP+S  +INQ +   GY GR TGHGFRHTMST LHEQG+ S W+E QLAHVDKN
Sbjct  301  GRNDPRKPISKESINQAIELLGYKGRLTGHGFRHTMSTILHEQGFNSAWIEMQLAHVDKN  360

Query  361  SIRGTYNHAQYLEGRREMLQWYAEHLEALS  390
            SIR+TYNHA YL+GRREM+QWYA+ +++LS
Sbjct  361  SIRDTYNHALYLDGRREMMQWYADYIDSLS  390

166) PST_0259 in NC_009434


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  382 bits (1436),  Expect = 2e-107, Method: Compositional matrix adjust.
 Identities = 204/389 (53%), Positives = 290/389 (75%), Gaps = 0/389 (0%)

Query  1    MPLTALQVKSAAPRESDYGLADGGGLFLWIRAAGGKSWRFRFRLDGKQSHISLGTIDKVT  60
            M+LT ++VK+A P++  Y LADGGG++L I + G+K WR ++R+ GK+  +S+G    VT
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   LVQARQLASDARQLVAQGRHPGLERKAMRAQAAMSRANTFKSLALEWHQHKAPRWSVGYA  120
            L +AR+  S+AR+L+A G +PG  +K  +    MS  NTF ++A EWHQ KA RWS+ Y 
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  121  GDVMEAFELDVFPQVGNLPLTDIKPMQWLQVFRRIESRGALEKLRKVRQRCQEVYRFAIA  180
            ++++++FE D+FP +G+ P+++IKPM+ L+ +R++E RGALEK+RKVRQRC EV+R+AI 
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  181  TGRAEYNPIADIGGALQTPTSRHYPFLPIAELPALIRSIQACPGHDVVKIATRLLILTGV  240
            TGRA+YNP +D+++AL TP   H+PFL   ELP ++  + +  G  + K AT++++LTGV
Sbjct  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV  240

Query  241  RTAELRGAPWSEFDLDQALWLIPAARMKMRRAHLVPLSNHAVAALRELERITGGYTLAFP  300
            RT ELR A W ++D++  LW IPA  MKM+R+H+VPLS++ +  +++LE I+    L F 
Sbjct  241  RTQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHPLVFI  300

Query  301  GRNDPAKPMSEAAINQLLKRSGYDGRATGHGFRHTMSTTLHEQGYPSEWVETQLAHVDKN  360
            GRNDP KP+S  +INQ +   GY GR TGHGFRHTMST LHEQG+ S W+E QLAHVDKN
Sbjct  301  GRNDPRKPISKESINQAIELLGYKGRLTGHGFRHTMSTILHEQGFNSAWIEMQLAHVDKN  360

Query  361  SIRGTYNHAQYLEGRREMLQWYANHLDEL  389
            SIR+TYNHA YL+GRREM+QWYA+ +D L
Sbjct  361  SIRDTYNHALYLDGRREMMQWYADYIDSL  389

167) Psest_4016 in NC_019936


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  382 bits (1435),  Expect = 2e-107, Method: Compositional matrix adjust.
 Identities = 204/389 (53%), Positives = 289/389 (75%), Gaps = 0/389 (0%)

Query  1    MPLTALQVKSAAPRKSDYGLADGGGLFLWIRAAGGKSWRFRFRLDGKQSHISLGTIDKVT  60
            M+LT ++VK+A P+   Y LADGGG++L I + G+K WR ++R+ GK+  +S+G    VT
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   LAQARQLASDARQLVAQGRHPGLERKVMRAQAAMSRANTFKSLALEWHQHKAPRWSVGYA  120
            LA+AR+  S+AR+L+A G +PG  +K  +    MS  NTF ++A EWHQ KA RWS+ Y 
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  121  GDVVEAFELDVFPQVGSLPLTDIKPMQWLQVFRRIESRGALEKLRKVRQRCQEVYRFAIA  180
            ++++++FE D+FP +G  P+++IKPM+ L+ +R++E RGALEK+RKVRQRC EV+R+AI 
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  181  TGRAEYNPIADIGGALQTPTSRHYPFLPIAEIPALIRSIQACPGHDVVKIATRLLILTGV  240
            TGRA+YNP +D+++AL TP   H+PFL   E+P ++  + +  G  + K AT++++LTGV
Sbjct  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV  240

Query  241  RTAELRGVPWSEFDLDKALWLIPAARMKMRRAHLVPLSQQAVAVLRELERITGGYTLAFP  300
            RT ELR   W ++D++  LW IPA  MKM+R+H+VPLS+Q + ++++LE I+    L F 
Sbjct  241  RTQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHPLVFI  300

Query  301  GRNDPAKPMSEAAINQLLKRSGYDGRATGHGFRHTMSTTLHEQGYPSEWVETQLAHVDKN  360
            GRNDP KP+S  +INQ +   GY GR TGHGFRHTMST LHEQG+ S W+E QLAHVDKN
Sbjct  301  GRNDPRKPISKESINQAIELLGYKGRLTGHGFRHTMSTILHEQGFNSAWIEMQLAHVDKN  360

Query  361  SIRGTYNHAQYLEGRREMLQWYANHVDEL  389
            SIR+TYNHA YL+GRREM+QWYA+ +D L
Sbjct  361  SIRDTYNHALYLDGRREMMQWYADYIDSL  389

168) A225_1439 in NC_018106


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  380 bits (1427),  Expect = 8e-107, Method: Compositional matrix adjust.
 Identities = 209/364 (58%), Positives = 293/364 (81%), Gaps = 0/364 (0%)

Query  1    MNPNGSRYWRLKYRIAGKEKLLALGVYPDITLAVARQKRADAKKVLAAGGDPGqekqeek  60
            +N NGS+YWR+KYR+AGKEK+L++GVYPD+TLA AR+KR++A+K+LAAGGDPG+ K+EEK
Sbjct  30   INTNGSKYWRMKYRFAGKEKMLSIGVYPDVTLADAREKRSEARKLLAAGGDPGEAKKEEK  89

Query  61   qakeqaVANSFERLAMEWHSHKSTSWSEGYAEHLLMYLKKDIFPFIGQKAITDISQVEML  120
             A++ ++ N+FE +A EWH  K+  WS  Y ++++  + KDIFP+IG+++I++I  + +L
Sbjct  90   IAQQMSLKNTFEAIAREWHQLKADRWSLRYRDEIIDTFEKDIFPYIGKRPIAEIKPMKLL  149

Query  121  NVLRKMEQRGVLDKLKKTRQACRQIFTYAIITGRAEHNPVSDLAGALKPPKQQHYPHLLV  180
            + LRKME+RG L+K++K RQ C ++F YAI+TGRA+ NP +DLA+AL  PK+ H+P L  
Sbjct  150  EALRKMEKRGALEKMRKVRQRCGEVFRYAIVTGRADYNPAPDLASALATPKKVHFPFLTA  209

Query  181  DQIPDFLRALNEYSGSTITRNATRLLMLTGLRTIELRASEWVDIDFDKGIWNIPAERMKM  240
            +++P+FL  L  Y+GS IT+ AT+++MLTG+RT ELR + W DIDF+  +W+IPAE MKM
Sbjct  210  NELPHFLNDLAGYTGSIITKTATQIIMLTGVRTQELRFARWEDIDFETKLWEIPAEVMKM  269

Query  241  RRPHLVPLSTQVRELLEEIHQLTGRGKYVFPGRNDAGKPMSEASINQVIKRIGYDGKATG  300
            +RPH+VPLS QV  L+ +++ ++ +   VF GRND+ KP+S  SINQ I  +GY G+ TG
Sbjct  270  KRPHIVPLSEQVIMLFKQLEPISKHHPLVFIGRNDPRKPISKESINQAIELLGYKGRLTG  329

Query  301  HGFRHTMSTILHERGYNTAWIETQLAHVDKNSIRGTYNHAQYLDGRRDMLQWYADYMAAL  360
            HGFRHTMSTILHE+G+N+AWIE QLAHVDKNSIR+TYNHA YLDGRR+M+QWYADY+ +L
Sbjct  330  HGFRHTMSTILHEQGFNSAWIEMQLAHVDKNSIRDTYNHALYLDGRREMMQWYADYIDSL  389

Query  361  ENGE  364
             + E
Sbjct  390  SSRE  393

169) M495_08725 in NC_021741


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  375 bits (1409),  Expect = 2e-105, Method: Compositional matrix adjust.
 Identities = 210/391 (54%), Positives = 300/391 (77%), Gaps = 4/391 (1%)

Query  1    MKLNARQVDTAKPKDKDYKMPDGNGLFLLVKTSGAKYWRFRYTFAGREKMLAIGVYPAVS  60
            M L   +V TAKPKDK YK++DG G++LL++T+G+KYWR +Y FAG+EKML+IGVYP V+
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   LSVARDKRDEARRSVAAGEDPVIVKNRGAATKA----TTFKEIANEWHEFKKPGWSAVYA  116
            L+ AR+KR EAR+ +AAG DP   K+    ++      TF  IA EWH++K   WS  Y 
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  117  EDILEAFEKDIYPAVGRLPVSEIEPVQMLTALRVIENRGATEKASKTRRWCGEVFGYAVA  176
            ++I+++FEKDI+P +G+ P++EI P+++L ALR +E+RGA EK  K R++CGEVF YA+ 
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  177  TGRAKYNPVSELRKAMKGHKGVsfpfleaeelpeflsaVDGYLGSPLPKLGIKIMMLAGM  236
            TGRA YNP ++L  A+   K V FPFL A+ELP+FL+ + GY GS + K + +I+ML+G+
Sbjct  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV  240

Query  237  RTRELRYSRWDWVDFDNALWEIPAEFMKMGRPHLIPLSKQLITLLKELYALTGRFENMFP  296
            RT+ELR++RW+ +DF+  LWEIPAE MKM RPH++PLS Q+I L+K+L +++ +   +F 
Sbjct  241  RTQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHPLVFI  300

Query  297  GRVNPTRVMCENTINKMIHAIGYKGRVVGHGFRHTFSTILNDQGFNPDWVEIQIAHVDKN  356
            GR +P + +  ++IN+ I+ +GYKGR+ GHGFRHT STIL++QGFN+ W+E+Q+AHVDKN
Sbjct  301  GRNDPRKPISKESINQAIELLGYKGRLTGHGFRHTMSTILHEQGFNSAWIEMQLAHVDKN  360

Query  357  KIRGVYNHALYLEGRREMVQWYSDYVDQLKG  387
             IR+ YNHALYL+GRREM+QWY+DY+D L +
Sbjct  361  SIRDTYNHALYLDGRREMMQWYADYIDSLSS  391

170) SBG_2173 in NC_015761


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  368 bits (1383),  Expect = 2e-103, Method: Compositional matrix adjust.
 Identities = 202/392 (52%), Positives = 292/392 (75%), Gaps = 2/392 (0%)

Query  1    MALTNVQIKNAAPGETDYTLSDGSGLFIIIKPQGSKLWRFRYRREGKLRRLSLGAYPEIS  60
            MALT++++K A P +  Y L+DG+G++++I+ +GSK WR +YR  GK + LS+G YP+++
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   LSQARIKAAEARAKLAQGISPVDERREQKEASKVI--NSFEGVCLEWQATRKATWSESYA  118
            L++AR K +EAR  LA G  P + ++E+K A ++   N+FE++  EW+  +   WS  Y 
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  119  DDTKRLFERNVFPVLGARPIGDIQPLELLDLLRKIEDRGANELATKVRRRCGEVYAYAIV  178
            D+    FE+++FP +G RPI++I+P+ LL+ LRK+E RGA E   KVR+RCGEV+ YAIV
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  179  TGRAKYNPARDLATAMQRFQRGHYASLDTADLPAFLTALEATTGNIMVNLAVRLLMLTGL  238
            TGRA YNPA DLA+A+   ++ H++ L + +LP FL  L + TG+I+ + A +++MLTG+
Sbjct  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV  240

Query  239  RPGELRKGEWKEIDIDNALWEIPAERMKARRPHLVPLSKQAIELLRSVKAISGNYSLMFP  298
            R  ELR + W +ID++  LWEIPAE MK +RPH+VPLS Q I L++ + +IS + +L+F 
Sbjct  241  RTQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHPLVFI  300

Query  299  GRNDVTRPMSDMAMNQLIKRCGYGEKLTGHGFRHMMSTILHEKGFNSAWIELQLAHVDKN  358
            GRND  +P+S  ++NQ I   GY  +LTGHGFRH MSTILHE+GFNSAWIE+QLAHVDKN
Sbjct  301  GRNDPRKPISKESINQAIELLGYKGRLTGHGFRHTMSTILHEQGFNSAWIEMQLAHVDKN  360

Query  359  TIRGTYNRAQYLEGRREMMQWYADHLQSLKTQ  390
            +IR+TYN+A YL+GRREMMQWYAD ++SL ++
Sbjct  361  SIRDTYNHALYLDGRREMMQWYADYIDSLSSR  392

171) YPA_0385 in NC_008150


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  366 bits (1377),  Expect = 6e-103, Method: Compositional matrix adjust.
 Identities = 210/334 (63%), Positives = 270/334 (81%), Gaps = 0/334 (0%)

Query  9    VTVARVKRDEAKKIVAGGGDPSQNKQQEKLARQGEATNTFEAITREWYQRRYDRWSESYR  68
            ++ AR KR EA+K++A+GGDP++ K++EK+A+Q    NTFEAI+REW Q + DRWS  YR
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  69   LEMMSTFESDVFPYIGYRPIKEIKPLELMAVLSKLEKRGATEKMRKVRQRCGEVWKYAII  128
             E++ TFE D+FPYIG RPI EIKP+ L+  L K+EKRGA EKMRKVRQRCGEV +YAI+
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  129  TGRAEYNPAPDLASAFAPHKREHYPHLTINEIPEFLSSLASYSGSMLVKLAMRLLILTGT  188
            TGRA+YNPAPDLASA+A  K+ H+P LT NE+P+FL+ LA+Y+GS++ K A ++++LTG 
Sbjct  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV  240

Query  189  RPGELRQAEWAEFDFDNALWEIPAVRMKMRRPHMVPLPDQAITILKQIQPISGRYQFVFP  248
            R  ELR A W ++DF+  LWEIPA  MKM+RPH+VPL++Q I ++KQ++PIS +  +VF 
Sbjct  241  RTQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHPLVFI  300

Query  249  GRIQHSKPISEMTLNVLIRRIGYGGRATGHGFRHTMSTILHEQGFNTAWIETQLAHVDKN  308
            GR +  KPIS  ++N  I  +GY GR TGHGFRHTMSTILHEQGFN+AWIE QLAHVDKN
Sbjct  301  GRNDPRKPISKESINQAIELLGYKGRLTGHGFRHTMSTILHEQGFNSAWIEMQLAHVDKN  360

Query  309  SIRGTYNHAQYLDGRREMLQWYADYMDSLENGEN  342
            SIR+TYNHA YLDGRREM+QWYADY+DSL + E+
Sbjct  361  SIRDTYNHALYLDGRREMMQWYADYIDSLSSRES  394

172) ECNA114_4679 in NC_017644


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  349 bits (1309),  Expect = 2e-97, Method: Compositional matrix adjust.
 Identities = 201/394 (52%), Positives = 291/394 (74%), Gaps = 4/394 (1%)

Query  1    MPLTVRQIESAKPADKDYKLSDGQGLYLLVKKSGSRYWNLKYRFAGKEKKLVIGVYPDIS  60
            M+LT  ++ +AKP DK YKL+DG G+YLL++ +GS+YW +KYRFAGKEK L IGVYPD++
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   LAQARQKRDEARKLLAEGKDPSYEKQALKFAIRESMACTFRTIAEELLTHMARRWTAGYQ  120
            LA+AR+KR EARKLLA G DP+  K+  K+A + S+  TF +IA E     A RW+  Y+
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  121  ADQRARLENHVFPALGNRPVTGIRPMEILNVLRVIEEQGKLEALRKTRQLCAQVFDYAIA  180
             +    +E+++FP +G+RP++ I+PM +L+ LR +E +G LE +RK RQ C++VF YAI 
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  181  TGRATVNPASTLSGVLLPPEKQQRRTLSEEQMGAFMHQMTA-SGNLMS-LATRMLVLTAV  238
            TGRA  NPA+ L++ L  P K +   L+ +++  F++++++ +G++++  AT++++LT+V
Sbjct  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV  240

Query  239  RTGELRLASWDEINFTEALWVIPKERMKMRRPHVVPLSRQVLALLKEIKTRTESRHSAFI  298
            RT ELR+A W++I+F   LW IP E MKM+RPH+VPLS QV+ L+K++   +  +   FI
Sbjct  241  RTQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHPLVFI  300

Query  299  IPGAFRKDRPRGRKCINEFLEQSGWHALTTAHGFRHTFSTILHDHDFSSAWIELQLAHVD  358
                 RK  P ++  IN+ +E  G  +  T+HGFRHT STILH+++F+SAWIE+QLAHVD
Sbjct  301  GRNDPRK--PISKESINQAIELLGYKGRLTGHGFRHTMSTILHEQGFNSAWIEMQLAHVD  358

Query  359  KNVMRGTYNHAQYLDGRREMMQWYADYIDSLSSQ  392
            KN +R+TYNHA YLDGRREMMQWYADYIDSLSS+
Sbjct  359  KNSIRDTYNHALYLDGRREMMQWYADYIDSLSSR  392

173) CDCO157_0285 in NC_017906


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  345 bits (1297),  Expect = 1e-96, Method: Compositional matrix adjust.
 Identities = 182/289 (63%), Positives = 240/289 (84%), Gaps = 0/289 (0%)

Query  42   NAFEKIAREWHQLKSAKWSAGYASDIMEAFKNDIFPYVGTRPVGEIKPLELLNVLRKIEK  101
            N+FE IAREWHQLK+ +WS  Y  +I+++F +DIFPY+G RP++EIKP+ LL+ LRK+EK
Sbjct  98   NTFEAIAREWHQLKADRWSLRYRDEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEK  157

Query  102  RGALEKMRKVRQRCSEVFRYAIATGRAEYNPAADLSSALEVHQSNHFPFLKADEIPDFLR  161
            RGALEKMRKVRQRC+EVFRYAI TGRA+YNPA+DL+SAL   +  HFPFL A+E+P+FL 
Sbjct  158  RGALEKMRKVRQRCGEVFRYAIVTGRADYNPAPDLASALATPKKVHFPFLTANELPHFLN  217

Query  162  ALEGYSGSKLVQIATKLLMITGVRTIELRAALWQEFDLDNAIWEIPAERMKMRRPHLVPL  221
             L GY+GS + + AT+++M+TGVRT ELR A W+++D++  +WEIPAE MKM+RPH+VPL
Sbjct  218  DLAGYTGSIITKTATQIIMLTGVRTQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPL  277

Query  222  SSQAVDLLNELKIMTGNYRYVFPGRNDPNRPMSEASINQAIKRIGYGGKVTGHGFRHTLS  281
            S Q + L+++L  ++ +   VF GRNDP +P+S  SINQAI  +GY G++TGHGFRHT+S
Sbjct  278  SEQVIMLFKQLEPISKHHPLVFIGRNDPRKPISKESINQAIELLGYKGRLTGHGFRHTMS  337

Query  282  TILHEQGFESAWIEIQLAHVDKNSIRGTYNHAQYFSGRKSMMDWYSNLI  330
            TILHEQGF+SAWIE+QLAHVDKNSIR+TYNHA Y+ GR+ MM+WY++ I
Sbjct  338  TILHEQGFNSAWIEMQLAHVDKNSIRDTYNHALYLDGRREMMQWYADYI  386

174) ECED1_5046 in NC_011745


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  341 bits (1282),  Expect = 2e-95, Method: Compositional matrix adjust.
 Identities = 202/395 (52%), Positives = 284/395 (72%), Gaps = 4/395 (1%)

Query  1    MPLTVRQIESAKPADKDYKLSDGQGLYLLIKKSGARYWNLKYRFAGKEKKLVIGVYPGIS  60
            M+LT  ++ +AKP DK YKL+DG G+YLLI+ +G++YW +KYRFAGKEK L IGVYP+++
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   LALARQKRDEARKLLAEGKDPSYEKQASKHALRESIACTFCTLAEELFTHMACRWTAGYL  120
            LA AR+KR EARKLLA G DP+  K+  K A + S+  TF ++A E     A RW+  Y 
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  121  ADQRARFENHINPMLGKRPVADIRPLEILNALRVIEKNGKLEALRKTRQLCSQIFDYAIA  180
             +    FE++I P +GKRP+A+I+P+ +L+ALR +EK G LE +RK RQ C+++F YAI 
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  181  TGRATINPASTLSSVVLHPEKQQRRMLSEEQLGAFMYQMK--VSGNFMSLVTQILVLTAV  238
            TGRA  NPA+ L+S +  P K +   L+ ++L  F+ ++    ++ +    TQI++LT+V
Sbjct  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV  240

Query  239  RTGELRLATWDEIDFTNALWVIPKERMKMRRPHVVPLSHQTQMLLKEIKIITAPRNSELV  298
            RT ELR+A W++IDF   LW IP E MKM+RPH+VPLS+Q  ML+K++  I+  ++  LV
Sbjct  241  RTQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPIS--KHHPLV  298

Query  299  IPGVYRDNQPRGRGCINEFLQQVGWHTFTTAHGFRHTFSTILHDHDFSSAWIELQLAHVD  358
            + G     +P ++  IN+ ++ +G     T+HGFRHT STILH+++F+SAWIE+QLAHVD
Sbjct  299  FIGRNDPRKPISKESINQAIELLGYKGRLTGHGFRHTMSTILHEQGFNSAWIEMQLAHVD  358

Query  359  KNIMRGTYNHAQYLDGRREMMQWYADYIDSLSEQA  393
            KN +R+TYNHA YLDGRREMMQWYADYIDSLS + 
Sbjct  359  KNSIRDTYNHALYLDGRREMMQWYADYIDSLSSRE  393

175) GEM_3075 in NC_018513


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  329 bits (1234),  Expect = 2e-91, Method: Compositional matrix adjust.
 Identities = 195/389 (51%), Positives = 271/389 (70%), Gaps = 3/389 (0%)

Query  1    MSLTDTAVRNLKPSDKPYKLADGGGMYLHVTPNGGKYWRLAFRLHGKQKIYALGVYPQVS  60
            M+LTD  V+  KP DKPYKLADGGGMYL +  NG+KYWR+ +R+ GK+K+ ++GVYP+V+
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   LAEARQMRDEAKKLIKQGIDPVIERKQTVRRRSEEQATTFELIAREWHKTKRSAWTESHA  120
            LA+AR+ R EA+KL+  G DP   +K+    +      TFE IAREWH+ K   W+    
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  121  KKIMNSLEADIFPRLGDRPIGSISAPDLLMALRVIEKRGALEIAGRVLQRCNAVFRYAVA  180
              I++++E DIFP +G RPI+ I +  LL ALR +EKRGALE   +V QRC  VFRYA+ 
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  181  TGRIVANPAAELRGALKTPERKHHAALAHDELPEFLAKLAGYDGDPQTRLGLQLMVHTFV  240
            TGR   NPA++L +AL TP + H + L+ +ELP+FL  LAGY G   T+ + Q+++ T V
Sbjct  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV  240

Query  241  RTGELRAASWAEFNLELSEWRIPAERMKMREEHIVPLSKQAVALLRQLQAVGAGSDLVFP  300
            RT ELR A W ++++E   W IPAE MKM+  HIVPLS Q + L++QL++++    LVF 
Sbjct  241  RTQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHPLVFI  300

Query  301  SGNGRRNKWISENTLLYALYRLGYHSRATGHGFRATASTILNEMGFHPDWIERQLAHAER  360
            + N+ R+  IS +++  A+  LGY +R TGHGFR T STIL+E GF++ WIE QLAH ++
Sbjct  301  GRNDPRKP-ISKESINQAIELLGYKGRLTGHGFRHTMSTILHEQGFNSAWIEMQLAHVDK  359

Query  361  NKVRAAYNRALYLAERRQMMQVW-SDYLD  388
            N +R +YN+ALYL  RR+MMQ W +DY+D
Sbjct  360  NSIRDTYNHALYLDGRREMMQ-WYADYID  387

176) vinT in NC_021232


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  328 bits (1232),  Expect = 2e-91, Method: Compositional matrix adjust.
 Identities = 197/388 (51%), Positives = 278/388 (72%), Gaps = 9/388 (2%)

Query  2    LTVKQIEAAKPKDKPYRMLDGNGLYLYVPASGKKVWQLRYKLDGKEKVLTLGKYPLMSLQ  61
            LT  ++ +AKPKDKPY++ DG G+YL + ++G K W+++Y++ GKEK+L++G YP ++L 
Sbjct  3    LTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVTLA  62

Query  62   EARDKAWTARKDVSVGVDPVKAKK-------LSVKDNSFSAIYHEWYDHKRQVWSEGYAD  114
            +AR+K   ARK ++ G DP  AKK       +S+K N+F AI +EW + K + WS  Y D
Sbjct  63   DAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLK-NTFEAIAREWHQLKADRWSLRYRD  121

Query  115  ELSRMFRDDILPMIGYLEIQDIEPMQILEVIRRFEERGAMERANKARRRCGEVFRYAIVT  174
            E+   F  DI+P IG   I +I PM++LE +R+ E RGA+E+  K R+RCGEVFRYAIVT
Sbjct  122  EIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIVT  181

Query  175  GRAKYNPAPDLADAMKGYRKKNYPFLPADQIPAFNNALSGFSGSIISKIATQVLQYTALR  234
            GRA YNPAPDLA A+   +K ++PFL A+++P F N L+G++GSII+K ATQ++  T++R
Sbjct  182  GRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGVR  241

Query  235  TKELRSMQWENVDFENRMITIDEEVMKGRRVHVVPMSDQVINLLNTLKPITSPVSSFVFA  294
            T+ELR  +WE++DFE ++  I  EVMK +R H+VP+S+QVI L++ L PI+    ++VF 
Sbjct  242  TQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKH-HPLVFI  300

Query  295  GRNDKKKPISENAVLLVIRQIGYEGLASGHGFRHQFSTIMNEHGWPADAIEKQLAHTASG  354
            GRND +KPIS +++   I  +GY G  +GHGFRH  STI++E+G  +  IE QLAH    
Sbjct  301  GRNDPRKPISKESINQAIELLGYKGRLTGHGFRHTMSTILHEQGFNSAWIEMQLAHVDKN  360

Query  355  SIRGIYNHAQYLDKRREMMQWWADYIDG  382
            SIR+ YNHA YLD RREMMQW ADYID+
Sbjct  361  SIRDTYNHALYLDGRREMMQWYADYIDS  388

177) MYA_1732 in NC_017920


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  327 bits (1228),  Expect = 5e-91, Method: Compositional matrix adjust.
 Identities = 190/386 (50%), Positives = 275/386 (72%), Gaps = 1/386 (0%)

Query  1    MPLTDVAVRAAKPREKSYKLADGQGMYLEIMPNGSKYWRLKYRIDGKEKRMALRVYPAVT  60
            M+LTD+ V++AKP++K+YKLADG GMYL I  NGSKYWR+KYR+ GKEK +++ VYP VT
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   LLAARKARDEIKDQLRAGLDPSHEKKRVKAQRSLDRENSFEPIAREWHQQKKGAWSERHA  120
            L  AR  R E +  L AG DP++ KK  K  + +   N+FE+IAREWHQ K + WS R  
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  121  DRIMKLLERELFPAIGARPIAEIMAPELLAVIRKIEARDAIELAHKTIQATSQIFRYAIA  180
            D I+  +E+++FP IG RPIAEI +  LL  +RK+E R+A+E  +K  Q  +++FRYAI 
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  181  TGRAERDSAPDLRGALKPRFVVHMRRVSEAELPELMRQISAYDGDFQTRLALQFMALTFV  240
            TGRA+ ++APDL +AL     VH   ++  ELP+++ ++++Y G + T+ A Q++ LT V
Sbjct  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV  240

Query  241  RTSELRFAEWTEID-EKKEWRIPPEKMKMRTPHIVPLSTQALEVIAKLPELNGHSQFLFP  299
            RT ELRFA W +ID E K W IP+E MKM+ PHIVPLS Q + ++ +L  ++ H  ++F 
Sbjct  241  RTQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHPLVFI  300

Query  300  SRSSSKKPMSENTILYALYRMGYHSRMTGHGFRGLASTILNEHSFNRDWIERQLAHSERD  359
            +R+ ++KP+S ++I  A+  +GY +R+TGHGFR   STIL+E++FN  WIE QLAH +++
Sbjct  301  GRNDPRKPISKESINQAIELLGYKGRLTGHGFRHTMSTILHEQGFNSAWIEMQLAHVDKN  360

Query  360  GVRAAYNHAEYLPERRKMMQWWSNYL  385
            ++R +YNHA YL  RR MMQW ++Y+
Sbjct  361  SIRDTYNHALYLDGRREMMQWYADYI  386

178) EbC_31530 in NC_014306


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  325 bits (1221),  Expect = 2e-90, Method: Compositional matrix adjust.
 Identities = 192/387 (50%), Positives = 278/387 (72%), Gaps = 7/387 (1%)

Query  2    LTVKQIDAAKPKDKPYRLLDSNGLYLYVPVSGKKVWQLRYKIEGKEKVLTVGKYPLMSLQ  61
            LT  ++ +AKPKDKPY+L D+ G+YL +  +G K W+++Y++ GKEK+L++G YP ++L 
Sbjct  3    LTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVTLA  62

Query  62   EARDKAWLARKDVSGGVDPIKAKK------QLARVNTFGAIYREWYEHKRQVWSLKYAEE  115
            +AR+K   ARK +++G DP  AKK      Q++  NTF AI REW + K + WSL+Y +E
Sbjct  63   DAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYRDE  122

Query  116  LGRMFADDVLPMIGDMEISEIEPMQILSVIRLYEERGAMERANKARRRCGEVFRYAIITG  175
            +   F  D++P IG   I+EI PM++L  +R  E RGA+E+  K R+RCGEVFRYAI+TG
Sbjct  123  IIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIVTG  182

Query  176  RAKYNPAPDLADAMKGYRKKNYPFLPSDQIPAFNQALAGYSGSVVSRVATQFLQYTALRT  235
            RA YNPAPDLA A+   +K ++PFL ++++P F + LAGY+GS++++ ATQ++  T++RT
Sbjct  183  RADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGVRT  242

Query  236  IEMRSLKWTDIDLATKTITIPPEVMKGRRAHIVPLSDQVITLLESLRPITQPVSLFVFAG  295
             E+R  +W DID+ TK   IP+EVMK +R+HIVPLS+QVI L+  L PI++  +L VF G
Sbjct  243  QELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHPL-VFIG  301

Query  296  RNDKKKSLSDNAVLQVIRQIGYEGLASGHGFRHQFSTIMNEHEWPNDAIERQLSHHDSGT  355
            RND +K++S +++ Q I  +GY G  +GHGFRH  STI++E+   +  IE QL+H D  +
Sbjct  302  RNDPRKPISKESINQAIELLGYKGRLTGHGFRHTMSTILHEQGFNSAWIEMQLAHVDKNS  361

Query  356  IRGIYNHAQYLEKRREMMQWWADWIDG  382
            IR+ YNHA YL+ RREMMQW AD ID+
Sbjct  362  IRDTYNHALYLDGRREMMQWYADYIDS  388

179) intC in NC_013508


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  324 bits (1214),  Expect = 5e-90, Method: Compositional matrix adjust.
 Identities = 194/387 (51%), Positives = 269/387 (70%), Gaps = 7/387 (1%)

Query  2    LTVKQIEAAKPKDKPYRLLDSNGLYLYIPASGKKVWQLRFKLGGKEKILTVGKYPLVSLQ  61
            LT  ++ +AKPKDKPY+L D+ G+YL I ++G K W+++++++GKEK+L++G YP V+L 
Sbjct  3    LTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVTLA  62

Query  62   EARDKAYQARKDIADGIDPVRTKKESEKD------NSFSVIYKEWYAHKRQVWSEGYANE  115
            +AR+K  +ARK +A G DP  +KKE          N+F  I +EW   K + WS  Y +E
Sbjct  63   DAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYRDE  122

Query  116  LQRMFETDILPLIGAMEMDEIEPMALLSVVRRIEERGAMERANKARRRCGEVFRYAIVTG  175
            +   FE DI+P IG   + EI PM LL  +R++E RGA+E+  K R+RCGEVFRYAIVTG
Sbjct  123  IIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIVTG  182

Query  176  RAKYNPAPDLADAMKGYRKKNFPFLPAEQIPAFNQALAGYSGSIVSKIATMVLQYTALRT  235
            RA YNPAPDLA A+   +K +FPFL A+++P F + LAGY+GSI++K AT ++  T++RT
Sbjct  183  RADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGVRT  242

Query  236  KELRSMKWPNVDFTSGLITIDESEMKSRKPHIVPMSHQVAELLKALKPVTEPVSQFVFAG  295
            +ELR  +W ++DF + L  I    MK ++PHIVP+S+QV  L+K L P++     +VF G
Sbjct  243  QELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKH-HPLVFIG  301

Query  296  RNDKNKSISENAVLLVIRQIGYEGLASGHGFRHQFSTILHEHEWPSEAIERQLAHTDKQS  355
            RND  K+IS +++   I  +GY G  +GHGFRH  STILHE+   S  IE QLAH DK+S
Sbjct  302  RNDPRKPISKESINQAIELLGYKGRLTGHGFRHTMSTILHEQGFNSAWIEMQLAHVDKNS  361

Query  356  VRGIYNHAQYLDKRREMMQWWADWIDG  382
            +R+ YNHA YLD RREMMQW AD ID+
Sbjct  362  IRDTYNHALYLDGRREMMQWYADYIDS  388

180) GM21_1254 in NC_012918


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  321 bits (1205),  Expect = 3e-89, Method: Compositional matrix adjust.
 Identities = 184/392 (47%), Positives = 272/392 (70%), Gaps = 3/392 (0%)

Query  1    MPLTDVKVRTAKPGEKQVKLSDGDGMYLLVTPNGGKCWRLKYRFGGKEKVLALGTYPEIS  60
            M+LTD+KV+TAKP +K  KL+DG+GMYLL+  NG+K WR+KYRF+GKEK+L++G YP+++
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   LVDARQRRHEARKLLANGVDPNEIKKAQKAATITETENSFEVVAREWHQKFSPSWSGVHS  120
            L DAR++R EARKLLA G DP E KK +K A      N+FE +AREWHQ  +  WS    
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  121  DTTLRRLQADVFPAIGARPISEIKAPDALAMLRRIESRGALETAHRIRTICGQVFRYAVA  180
            D  +  ++ D+FP IG RPI+EIK+   L  LR++E RGALE  +++R  CG+VFRYA+ 
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  181  TGRAERDCTADLKGALPPCKKSHLAAITDPKAVAPLLRAIDGYQGTIPVKSALQLAAMFF  240
            TGRA+ + ++DL +AL+  KK H++ +T ++ ++ +L  + GY G+I  K+A Q+  +  
Sbjct  181  TGRADYNPAPDLASALATPKKVHFPFLT-ANELPHFLNDLAGYTGSIITKTATQIIMLTG  239

Query  241  VRPGELRQAEWSEIDFENALWNIPASRMKMKEPHIVPLASHAIAILKELQALTGRSRFLF  300
            VR  ELR A W +IDFE  LW+IPA  MKMK PHIVPL+ + I ++K+L++++ +  ++F
Sbjct  240  VRTQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHPLVF  299

Query  301  PSGRSFTRPMSNNAINAALRRMGFDKDEMTGHGFRAMARTILDEVLQFRPDFIEHQLAHA  360
             +     +P+S+++IN A+  +G+ K+ +TGHGFR    TIL+E   F +  IE QLAH 
Sbjct  300  IGRNDPRKPISKESINQAIELLGY-KGRLTGHGFRHTMSTILHEQ-GFNSAWIEMQLAHV  357

Query  361  VKDPNGRAYNRTAHLAERRKMMQTWAEYLDDL  392
             K++   +YN++  L  RR MMQ  A+Y+D L
Sbjct  358  DKNSIRDTYNHALYLDGRREMMQWYADYIDSL  389

181) RSc0968 in NC_003295


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  316 bits (1186),  Expect = 1e-87, Method: Compositional matrix adjust.
 Identities = 201/390 (52%), Positives = 287/390 (74%), Gaps = 1/390 (0%)

Query  1    MPLTDLSARNAKPQDKPYRLADGLGMYLEVMPNGSKYWRLKYRIAGKEKRLALGVYPSVG  60
            M+LTD+  + AKP+DKPY+LADG GMYL +  NGSKYWR+KYR+AGKEK L++GVYP V 
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   laqartarddarrliaaGTDPSQARKEAKLATTTARTHTFEVVAREWHEKQSATWVPTYA  120
            LA+AR  R +AR+L+AAG DP++A+KE K+A   +  +TFE +AREWH+ ++  W   Y 
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  121  TKVLHSLETDIFPDLGARPITEITAPQMLATLRKVESRDALETVARLQQRCSAVFRYAVV  180
              +++++E DIFP +G RPI+EI + ++L +LRK+E R+ALE + +++QRC+ VFRYA+V
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  181  TGRAAHNPCTDLKGAFKTAKVQHMARVQANEVPTLIKNIRGYDGDLITRIALQFMALTFV  240
            TGRA  NP  DL +A+ T+K  H + + ANE+P +++++ GY G +IT+ A Q++ LT V
Sbjct  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV  240

Query  241  RTKELIGAQWSEIDFETEEWRIPAERMKMREPHFVPLSWQAIALLRAAEKMTGNRQYVFQ  300
            RT+EL  A+W +IDFET  W IPAE MKM+ PH+VPLS Q I L++  E ++ ++  VF 
Sbjct  241  RTQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHPLVFI  300

Query  301  SPKG-RTHISNNTILYALYRLGYHSRMTGHGFRGLASTMLHEQGFNPDVIERQLAHAERN  359
            + ++ R  IS+++I  A+  LGY +R+TGHGFR   ST+LHEQGFN+  IE QLAH ++N
Sbjct  301  GRNDPRKPISKESINQAIELLGYKGRLTGHGFRHTMSTILHEQGFNSAWIEMQLAHVDKN  360

Query  360  KVRAAYNHAQYLPERRRMMQHWADHLDQLA  389
             +R +YNHA YL  RR MMQ  AD +D L+
Sbjct  361  SIRDTYNHALYLDGRREMMQWYADYIDSLS  390

182) intB in NC_005085


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  316 bits (1183),  Expect = 2e-87, Method: Compositional matrix adjust.
 Identities = 187/389 (49%), Positives = 275/389 (71%), Gaps = 2/389 (0%)

Query  1    MPLTDTAIRNAKPREDGKPAKLADGGSLFLWVMPNGAKYWRMAYRFDGKQKTLAFGVYPT  60
            M+LTD  ++ AKP++  KP KLADGG+++L +  NG+KYWRM YRF GK+K L++GVYP 
Sbjct  1    MALTDIKVKTAKPKD--KPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPD  58

Query  61   TSLKDAREKREAARKLLAAGTDPNAAKKEQKRERQLTVENSFEIVAREWYDKQLPRWTDD  120
             +L DAREKR  ARKLLAAG DP  AKKE+K  +Q+++ N+FE +AREW + +  RW+  
Sbjct  59   VTLADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLR  118

Query  121  HAVRILDSLKADAFPDLGKLPVSQLTAPVILDTIRKIEKRGAVETAQRVLQRISAVIRYA  180
                I+D++  D FP +GK P++++ +  +L+++RK+EKRGA+E  ++V QR + V+RYA
Sbjct  119  YRDEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYA  178

Query  181  IQTGRAVHNPATDLTGAIRAKKVEHRPALPRGELREFYRRLAAEPLYIPTRIAMHLLMLT  240
            I TGRA  NPA DL++A+ + K  H P L   EL +F   LA+    I T+ A +++MLT
Sbjct  179  IVTGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLT  238

Query  241  FVRPGELRAARWEEFDEERAEWRIPAERMKMREPHLVPLSRQALELLKELRPLTGKSALL  300
             VR  ELR ARWE++D E   W IPAE MKM+ PH+VPLS Q + L+K+L P++   +L+
Sbjct  239  GVRTQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHPLV  298

Query  301  FPAVTDLKKPMSENTLGYAMGRMGYKGTATPHGFRALASTVLNEEGFDPDIIEKQLAHAE  360
            F +  D +KP+S +++  A+  +GYKG  T HGFR   ST+L+E+GF++  IE QLAH +
Sbjct  299  FIGRNDPRKPISKESINQAIELLGYKGRLTGHGFRHTMSTILHEQGFNSAWIEMQLAHVD  358

Query  361  RNKVRAAYHRAEYLEERRKMMQWWAEFLG  389
            +N +R +Y++A YL+ RR MMQW A++++
Sbjct  359  KNSIRDTYNHALYLDGRREMMQWYADYID  387

183) i14_4873a in NC_017652


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  314 bits (1178),  Expect = 4e-87, Method: Compositional matrix adjust.
 Identities = 178/407 (44%), Positives = 277/407 (69%), Gaps = 25/407 (6%)

Query  1    MALTDIKVRTAKPTDKQYKLTDGGGMHLLVHPNGSKYWRLQYRYEGKQKMLALGVYPEIT  60
            MALTDIKV+TAKP DK YKL+DGGGM LL++ NGSKYWR++YR+ GK+KML++GVYP++T
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   LADARVRRDEARKLLANGVDPGDKKKNDKVEQSKA--RTFKEVAIEWHS-TNKKWSEDHA  117
            LADAR +R EARKLLA G DPG+ KK++K+ Q  +   TF  +A EWH     +WS    
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  118  HRVLKSLEDNLFAALGERNIAELKTRDLLAPIKAVEMSGRLEVAARLQQRTTAIMRYAVQ  177
            + ++ ++E ++F+ +G R IAE+K   LL +++ +E  G LE   +++QR   + RYA+ 
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  178  SGLIDYNPAQEMAGAVASCNRQHRPALELKRIPELLTKIDSYTGRPLTRWATELTLLIFI  237
            +G  DYNPA ++A+A+A+ ++ H P L  + +P++L  + +YTG  +T+ AT++ +L  +
Sbjct  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV  240

Query  238  RSSELRFARWSEIDFEASIWTIPPEREPIPGVKHSHRGSKMRTTHLVPLSTQALAILKQI  297
            R+ ELRFARW +IDFE+ +W IP+E              KM+  H+VPLS Q + ++KQ+
Sbjct  241  RTQELRFARWEDIDFETKLWEIPAE------------VMKMKRPHIVPLSEQVIMLFKQL  288

Query  298  KQFCGSHDLIFIGDHDSHKPMSENTVNSALRVMGYDTKVEVCGHGFRTMACSSLIESGL-  356
              +   H L+FIG +D++KP+S +++N A+ ++GY  +  + GHGFR    + L E G+ 
Sbjct  289  EPISKHHPLVFIGRNDPRKPISKESINQAIELLGYKGR--LTGHGFRHTMSTILHEQGFN  346

Query  357  --WSRDAVERQMSHMERNSVRAAYIHKAEHLEERRLMLQWWADFLDA  401
              W    +E Q++H+++NS+R +Y H A  L+ RR M+QW AD++D+
Sbjct  347  SAW----IEMQLAHVDKNSIRDTYNH-ALYLDGRREMMQWYADYIDS  388

184) i02_4873a in NC_017651


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  314 bits (1178),  Expect = 4e-87, Method: Compositional matrix adjust.
 Identities = 178/407 (44%), Positives = 277/407 (69%), Gaps = 25/407 (6%)

Query  1    MALTDIKVRTAKPTDKQYKLTDGGGMHLLVHPNGSKYWRLQYRYEGKQKMLALGVYPEIT  60
            MALTDIKV+TAKP DK YKL+DGGGM LL++ NGSKYWR++YR+ GK+KML++GVYP++T
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   LADARVRRDEARKLLANGVDPGDKKKNDKVEQSKA--RTFKEVAIEWHS-TNKKWSEDHA  117
            LADAR +R EARKLLA G DPG+ KK++K+ Q  +   TF  +A EWH     +WS    
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  118  HRVLKSLEDNLFAALGERNIAELKTRDLLAPIKAVEMSGRLEVAARLQQRTTAIMRYAVQ  177
            + ++ ++E ++F+ +G R IAE+K   LL +++ +E  G LE   +++QR   + RYA+ 
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  178  SGLIDYNPAQEMAGAVASCNRQHRPALELKRIPELLTKIDSYTGRPLTRWATELTLLIFI  237
            +G  DYNPA ++A+A+A+ ++ H P L  + +P++L  + +YTG  +T+ AT++ +L  +
Sbjct  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV  240

Query  238  RSSELRFARWSEIDFEASIWTIPPEREPIPGVKHSHRGSKMRTTHLVPLSTQALAILKQI  297
            R+ ELRFARW +IDFE+ +W IP+E              KM+  H+VPLS Q + ++KQ+
Sbjct  241  RTQELRFARWEDIDFETKLWEIPAE------------VMKMKRPHIVPLSEQVIMLFKQL  288

Query  298  KQFCGSHDLIFIGDHDSHKPMSENTVNSALRVMGYDTKVEVCGHGFRTMACSSLIESGL-  356
              +   H L+FIG +D++KP+S +++N A+ ++GY  +  + GHGFR    + L E G+ 
Sbjct  289  EPISKHHPLVFIGRNDPRKPISKESINQAIELLGYKGR--LTGHGFRHTMSTILHEQGFN  346

Query  357  --WSRDAVERQMSHMERNSVRAAYIHKAEHLEERRLMLQWWADFLDA  401
              W    +E Q++H+++NS+R +Y H A  L+ RR M+QW AD++D+
Sbjct  347  SAW----IEMQLAHVDKNSIRDTYNH-ALYLDGRREMMQWYADYIDS  388

185) D782_3965 in NC_020063


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  314 bits (1176),  Expect = 6e-87, Method: Compositional matrix adjust.
 Identities = 181/407 (45%), Positives = 280/407 (69%), Gaps = 25/407 (6%)

Query  1    MALTDIKVRTAKPMDKQYKLTDGNGMHLLVHPNGSKYWRLQYRFDGKQKMLALGVYPDVS  60
            MALTDIKV+TAKP DK YKL+DG GM LL++ NGSKYWR++YRF GK+KML++GVYPDV+
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   LADARTRREEARKLVANGIDPGDKKKNDKVEQEDA--RTFEQLAIEWHA-TNKKWSEEHS  117
            LADAR +R EARKL+A G DPG+ KK++K+ Q+ +   TFE +A EWH     +WS    
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  118  RRVLKSLEDNLFPAIGKRNITELKTRDLLAPIKVVELSGRLEVASRLQQRTTAIMRYAVQ  177
              ++ ++E ++FP IGKR I+E+K   LL +++ +E  G LE   +++QR   + RYA+ 
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  178  SGLLDYNPAQEMVGAVASSNRQHRPALELKRTPELLQRIGSYTGRPLTRLAVELTLLVFI  237
            +G  DYNPA ++ +A+A++++ H P L  +  P++L+ +++YTG  +T+ A ++ +L  +
Sbjct  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV  240

Query  238  RSSELRFARWSEIDFETSMWTIPAEREAIEGVKHSQRGSKMRTPHLVPLSRQALEILEQI  297
            R+ ELRFARW +IDFET +W IPAE              KM+ PH+VPLS Q + ++ Q+
Sbjct  241  RTQELRFARWEDIDFETKLWEIPAE------------VMKMKRPHIVPLSEQVIMLFKQL  288

Query  298  KTFSGDHELIFIGDHNPRKPMSENTVNKSLRVMGYDTQVEVCGHGFRTMACSSLIESGL-  356
              +S +H L+FIG ++PRKP+S +++N+++ ++GY  ++   GHGFR    + L E G+ 
Sbjct  289  EPISKHHPLVFIGRNDPRKPISKESINQAIELLGYKGRLT--GHGFRHTMSTILHEQGFN  346

Query  357  --WSRDAVERLMSHMERNSVRAAYIHKAEHLDERKLMLQWWADFLDA  401
              W    +E  ++H+++NS+R +Y H A  LD R+ M+QW AD++D+
Sbjct  347  SAW----IEMQLAHVDKNSIRDTYNH-ALYLDGRREMMQWYADYIDS  388

186) PSPTO_5344 in NC_004578


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  312 bits (1169),  Expect = 2e-86, Method: Compositional matrix adjust.
 Identities = 185/396 (47%), Positives = 275/396 (70%), Gaps = 10/396 (2%)

Query  1    MPLSDTTIRTAKPKDKLYRLTDANGLCLEIAPSGSKLWRYRYRFNGKAKMLALGAYPAVT  60
            M+L+D  ++TAKPKDK Y+L+D+ G+ L I  +GSK WR +YRF GK KML++G YP VT
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   LLKARQLRDSARQLLVEGNDPGEHKKTAQQAQKVE-GLTFETLAREWFAYNSPRWAESTT  119
            L  AR+ R  AR+LL  G DPGE KK  + AQ++    TFE++AREW   ++ RW  S  
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRW--SLR  118

Query  120  YKAKLY--MENDLIPGIGARPVKALTRPDLVDLVRKVEARGTLNAAGKIRQWLHQIFRYG  177
            Y+  +    E+D++P IG RP+  +    L++ +RK+E RG+L+   K+RQ+  ++FRY+
Sbjct  119  YRDEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYA  178

Query  178  LAKGVVESNPATDL-DVVAAPQKAPRHHPHVPFSELPELLEICDGSKINTLTRCAIHLLV  236
            +  G  + NPA DL   +A+P+K   H P +  +ELP++L+   G   + +T+ A ++++
Sbjct  179  IVTGRADYNPAPDLASALATPKKV--HFPFLTANELPHFLNDLAGYTGSIITKTATQIIM  236

Query  237  LTAVRPGELRNAPWSEFDLDAATWAIPKERMKARRPHVVPLPTQAVDILRQLQPITGRYP  296
            LT+VR  ELR A W ++D+++  W IP E MK +RPH+VPL+ Q + +++QL+PI+ + P
Sbjct  237  LTGVRTQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHP  296

Query  297  LVFAGQHNPSRPMSENTINKALRLLGYENRQTGHGFRHLLSTELNGRGYNKDWIERQLAH  356
            LVF G+++P +P+S ++IN+A+ LLGY  R TGHGFRH +ST L+ +G+N  WIE QLAH
Sbjct  297  LVFIGRNDPRKPISKESINQAIELLGYKGRLTGHGFRHTMSTILHEQGFNSAWIEMQLAH  356

Query  357  GDADGIRDTYNHASYLEQRRGMMQAW-ADSIDALSA  391
             D ++IRDTYNHA YL+ RR MMQ W AD ID+LS+
Sbjct  357  VDKNSIRDTYNHALYLDGRREMMQ-WYADYIDSLSS  391

187) EcSMS35_4753 in NC_010498


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  312 bits (1170),  Expect = 2e-86, Method: Compositional matrix adjust.
 Identities = 177/407 (44%), Positives = 277/407 (69%), Gaps = 25/407 (6%)

Query  1    MALTDIKVRAAKPTDKQYKLTDGGGMHLLVHPNGSKYWRLQYRYEGKQKMLALGVYPEIT  60
            MALTDIKV++AKP DK YKL+DGGGM LL++ NGSKYWR++YR+ GK+KML++GVYP++T
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   LADARVRRDEARKLLANGVDPGDKKKNDKVEQSKA--RTFKEVAIEWHG-TNKKWSEDHA  117
            LADAR +R EARKLLA G DPG+ KK++K+ Q  +   TF  +A EWH     +WS    
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  118  HRVLKSLEDNLFAALGERNIAELKTRDLLAPIKAVEMSGRLEVAARLQQRTTAIMRYAVQ  177
            + ++ ++E ++F+ +G R IAE+K   LL +++ +E  G LE   +++QR   + RYA+ 
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  178  SGLIDYNPAQEMAGAVASCNRQHRPALELKRIPELLTKIDSYTGRPLTRWATELSLLIFI  237
            +G  DYNPA ++A+A+A+ ++ H P L  + +P++L  + +YTG  +T+ AT++ +L  +
Sbjct  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV  240

Query  238  RSSELRFARWSEIDFEASIWTIPPEREPIPGVKHSHRGSKMRTTHLVPLSTQALAILKQI  297
            R+ ELRFARW +IDFE+ +W IP+E              KM+  H+VPLS Q + ++KQ+
Sbjct  241  RTQELRFARWEDIDFETKLWEIPAE------------VMKMKRPHIVPLSEQVIMLFKQL  288

Query  298  KQFCGAHDLIFIGDHDSHKPMSENTVNSALRVMGYDTKVEVCGHGFRTMACSSLVESGL-  356
              +   H L+FIG +D++KP+S +++N A+ ++GY  +  + GHGFR    + L E G+ 
Sbjct  289  EPISKHHPLVFIGRNDPRKPISKESINQAIELLGYKGR--LTGHGFRHTMSTILHEQGFN  346

Query  357  --WSRDAVERQMSHMERNSVRAAYIHKAEHLEERRLMLQWWADFLDA  401
              W    +E Q++H+++NS+R +Y H A  L+ RR M+QW AD++D+
Sbjct  347  SAW----IEMQLAHVDKNSIRDTYNH-ALYLDGRREMMQWYADYIDS  388

188) CFSAN001992_11535 in NC_020307


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  312 bits (1168),  Expect = 3e-86, Method: Compositional matrix adjust.
 Identities = 176/407 (44%), Positives = 281/407 (70%), Gaps = 24/407 (5%)

Query  1    MALSDVKVRSAKPEAKAYKLTDGDGMVLLVHPNGSKYWRLRYRFGGKEKMLALGKYPEVS  60
            MAL+D+KV++AKP  K+YKL+DG+GM LL++ NGSKYWR++YRF+GKEKML++G YP+V+
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   LADARSRRDEARKLLANGVDPSENKKAVKVEQEQE-AITFEVVARDWHA-SNQKWSASHS  118
            LADAR +R EARKLLA G DP+E KK  K+ Q+     TFE +AR+WH    ++WS    
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  119  ARVLKSLEDNLFAAIGKRNIAELKTRDLLVPIKAVESSGRLEVAARLQQRTTAIMRFAVQ  178
              ++ ++E ++F+ IGKR IAE+K   LL +++ +E  G LE   +++QR   + R+A+ 
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  179  SGLIDYNPAQEIAGAVATAKRQHRAALELNRIPELLYRIDHYSGRPLTRFAVELMLLVFI  238
            +G  DYNPA ++A+A+AT+K+ H + L  N +P++L  +  Y+G  +T+ A ++++L  +
Sbjct  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV  240

Query  239  RSSELRFARWTEVDFETAMWTIPGEREPLEGVKHSQRGSKMRTPHLVPLSRQALAILEKI  298
            R+ ELRFARW ++DFET +W IP+E              KM+ PH+VPLS Q + ++ ++
Sbjct  241  RTQELRFARWEDIDFETKLWEIPAE------------VMKMKRPHIVPLSEQVIMLFKQL  288

Query  299  KSMNGNRELIFVGDHDPRKPMSENTVNKALRVMGYDTKTEVCGHGFRTMACSSLIESGL-  357
             +++ ++ L+F+G +DPRKP+S +++N+A+ ++GY  K  + GHGFR    + L E G+ 
Sbjct  289  EPISKHHPLVFIGRNDPRKPISKESINQAIELLGY--KGRLTGHGFRHTMSTILHEQGFN  346

Query  358  --WSRDAVERQMSHQERSSVRAAYIHKAEHLGERRLMLQWWADYLDA  402
              W    +E Q++H +++S+R +Y H A  L+ RR M+QW ADY+D+
Sbjct  347  SAW----IEMQLAHVDKNSIRDTYNH-ALYLDGRREMMQWYADYIDS  388

189) intC in NC_017663


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  310 bits (1163),  Expect = 6e-86, Method: Compositional matrix adjust.
 Identities = 185/387 (48%), Positives = 271/387 (71%), Gaps = 7/387 (1%)

Query  2    LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTLQ  61
            LT  ++ +AKPK+KPY+L DG G+YL +  +G K W+++Y++ GKEK+L++G YP +TL 
Sbjct  3    LTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVTLA  62

Query  62   EARDKAWTARKDISVGIDPVkakkassnnnsfs------aIYKEWYEHKKQVWSVGYANE  115
            +AR+K   ARK ++ G DP  AKK     +  S      AI +EW + K + WS+ Y +E
Sbjct  63   DAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYRDE  122

Query  116  LAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTG  175
            +   F+ DI+P IG   I +I PM+LLE +R+ E RGA+E+  K R+RCGEVFRYAIVTG
Sbjct  123  IIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIVTG  182

Query  176  RAKYNPAPDLADAMKGYRKKNFPFLPADQIPEFNKALATFSGSIVSLIATKVLRYTALRT  235
            RA YNPAPDLA A+   +K +FPFL A+++P+F + LA ++GSI++  AT+++  T++RT
Sbjct  183  RADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGVRT  242

Query  236  KELRSMQWKNVDFENRIITIDANVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEFVFAG  295
            +ELR  +W ++DFE ++  I A+VMK ++ H+VP+S+QV+ L+  L +I+K  + +VF G
Sbjct  243  QELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHP-LVFIG  301

Query  296  RNDKKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNEHEWPADAIEVQLAHANGGS  355
            RND +KPI  +++   I  +GY G  +GHGFRH  STI++E+   +  IE+QLAH +  S
Sbjct  302  RNDPRKPISKESINQAIELLGYKGRLTGHGFRHTMSTILHEQGFNSAWIEMQLAHVDKNS  361

Query  356  VRGIYNHAQYLDKRREMMQWWADWIDE  382
            +R+ YNHA YLD RREMMQW AD ID 
Sbjct  362  IRDTYNHALYLDGRREMMQWYADYIDS  388

190) Rfer_1354 in NC_007908


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  310 bits (1163),  Expect = 6e-86, Method: Compositional matrix adjust.
 Identities = 184/394 (47%), Positives = 278/394 (71%), Gaps = 10/394 (2%)

Query  1    MSLTDTAIKKAKPGDKPVKLSDGKGLYLLVNPVGSKLWRWKYRFLGKEKVMSLGAYPDVS  60
            M+LTD  +K AKP DKP KL+DG G+YLL+N  GSK WR KYRF GKEK++S+G YPDV+
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   LAQARDGMGAARKLLASGTDPMAQRATDKITKQASAENSFQSVALLWWDHWHGAKSAR--  118
            LA+AR+  + ARKLLA+G DP   +  +KI++Q S  N+F+++A     +WH  K+ R  
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIA----REWHQLKADRWS  116

Query  119  --HADDVMRRLKADVFPAIGARPVSEIQAHELVGMVQTISKRGALDIAKRALQTSGQVFR  176
                D+++  +  D+FP IG RP++EI++  L+  ++ + KRGAL+  ++  Q  G+VFR
Sbjct  117  LRYRDEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFR  176

Query  177  YAVAHGLAQRNPASDIKPSDVLASRKAANYARISAKELPELLRHIEGYAGAAVTRLAMKL  236
            YA+  G A+ NPA+D+  +  LA+ K  +++ ++A+ELP++L ++ GY+G+ +T+ A ++
Sbjct  177  YAIVTGRADYNPAPDL--ASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQI  234

Query  237  MALTFVRTSELIGARWAEFDLEARRWDIPASRMKMKTPHIVPLSTQAVNVLQTLQLVSGR  296
            + LT VRT EL  ARW ++D+E++ W+IPA  MKMK PHIVPLS Q + +++ L+ +S +
Sbjct  235  IMLTGVRTQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKH  294

Query  297  GTLLFPGERDHEKSMSNNTILGALDRMGYKGRMTGHGFRGVASTLLHEMGFDHAHIELQL  356
              L+F G  D  K++S+++I  A++ +GYKGR+TGHGFR   ST+LHE GF+ A IE+QL
Sbjct  295  HPLVFIGRNDPRKPISKESINQAIELLGYKGRLTGHGFRHTMSTILHEQGFNSAWIEMQL  354

Query  357  AHQERNEVSAAYNHATYLKQRTKMMQHWADYLDS  390
            AH ++N +  +YNHA YL  R  MMQ  ADY+DS
Sbjct  355  AHVDKNSIRDTYNHALYLDGRREMMQWYADYIDS  388

191) Dd586_0394 in NC_013592


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  310 bits (1163),  Expect = 7e-86, Method: Compositional matrix adjust.
 Identities = 186/407 (46%), Positives = 281/407 (70%), Gaps = 25/407 (6%)

Query  1    MALTDIKVRIAKPSDKQYKLTDGNGMHLLVHPNGSKYWRLQYRFGGKQKMLALGVYPDVS  60
            MALTDIKV+ AKP DK YKL+DG GM LL++ NGSKYWR++YRF+GK+KML++GVYPDV+
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   LadararrdearKLLANGTDPGDKKKSDKVEQSEAL--TFKEVAIEWHS-TNKKWSQEHS  117
            LADAR +R EARKLLA G DPG+ KK +K+ Q  +L  TF  +A EWH     +WS    
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  118  HRVLKSLEDNLFPAIGKRNIAELKTRDLLAPIKAVEQSGRLEVASRLQQRTTAIMRYAVQ  177
            + ++ ++E ++FP IGKR IAE+K   LL +++ +E+ G LE   +++QR   + RYA+ 
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  178  SGLIDYNPAQEMAGAVASSNRQHRPALDLKHTPELLRRIDNYTGRPLTRLAVELTLLIFI  237
            +G  DYNPA ++A+A+A++++ H P L  ++ P++L  +  YTG  +T+ A ++ +L  +
Sbjct  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV  240

Query  238  RSSELRFARWSEIDFDTALWTIPPEREPIDGVKHSHRGSKMRTPHLVPLSRQALATLKQI  297
            R+ ELRFARW +IDF+T LW IP+E              KM+ PH+VPLS Q +  +KQ+
Sbjct  241  RTQELRFARWEDIDFETKLWEIPAE------------VMKMKRPHIVPLSEQVIMLFKQL  288

Query  298  QQFSCDHELIFIGDHDPRKPMSENTVNKALRVMGYDTKVEVCGHGFRTMACSSLIESGL-  356
            + +S +H L+FIG +DPRKP+S +++N+A+ ++GY  +  + GHGFR    + L E G+ 
Sbjct  289  EPISKHHPLVFIGRNDPRKPISKESINQAIELLGYKGR--LTGHGFRHTMSTILHEQGFN  346

Query  357  --WSRDAVERQMSHMERNSVRAAYIHKAEHLDERKLMLQWWADFLDA  401
              W    +E Q++H+++NS+R +Y H A  LD R+ M+QW AD++D+
Sbjct  347  SAW----IEMQLAHVDKNSIRDTYNH-ALYLDGRREMMQWYADYIDS  388

192) MICA_2451 in NC_016026


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  309 bits (1159),  Expect = 1e-85, Method: Compositional matrix adjust.
 Identities = 187/396 (48%), Positives = 280/396 (71%), Gaps = 7/396 (1%)

Query  1    MTLTNTTCKNAKPKEKPYKLADGGGLYLLVNPNGAKHWRLKYRFLGKEKLLAIGPYPLTS  60
            M+LT+   K AKPK+KPYKLADGGG+YLL+N NG+K WR+KYRF GKEK+L+IG YP  +
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   LadarqarddaKKLIQSGADPVSHKREGKRNALRNAQNTFEAVALEWVENQKERWSPKYA  120
            LADAR+ R +A+KL+ +G+DP   K+E K     + +NTFEA+A EW + + +RWS +Y 
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  121  EKVLRGLTVNIFPEIGQRPIAQITPPELLDALRKIEKRGALDIAGRTKQICGQVFRYGIQ  180
            + ++  +  +IFP IG+RPIA+I P  LL+ALRK+EKRGAL+   + +Q CG+VFRY+I 
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  181  TGKCTRDASADLRGALKGRKAEHFASIDPKELPAFLKALGQNDARLYARTRRAIHLSMLC  240
            TG+   ++++DL +AL   K  HF+ + ++ELP FL+ L+   + + ++T  A ++ ML 
Sbjct  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKT--ATQIIMLT  238

Query  241  FTRPGEIRQAQWSEMDFEARQWVIPAERMKMRRDHIVPLSMQAIAILEAQREETGKLNTP  300
              R  E+R A+W ++DFE++ W IPAE MKM+R HIVPLS Q I ++  Q E  +K + P
Sbjct  239  GVRTQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFK-QLEPISK-HHP  296

Query  301  YVFPSQIQPRKPMSDGTVNQAVKRLGYTDRMTAHGFRALARTAIREALGYDSEIIEKQLA  360
             VF ++ +PRKP+S  ++NQA+  LGY +R+T+HGFR    T ++E  G++S  IE QLA
Sbjct  297  LVFIGRNDPRKPISKESINQAIELLGYKGRLTGHGFRHTMSTILHEQ-GFNSAWIEMQLA  355

Query  361  HRTSNPLGEAYDRTQFLSQRKKMMQDW-ADHLDSIA  395
            H   N++ ++Y+++ +L  R+ MMQ W AD +DS++
Sbjct  356  HVDKNSIRDTYNHALYLDGRREMMQ-WYADYIDSLS  390

193) Ser39006_0951 in NC_022268


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  309 bits (1159),  Expect = 1e-85, Method: Compositional matrix adjust.
 Identities = 174/407 (43%), Positives = 281/407 (70%), Gaps = 24/407 (5%)

Query  1    MALTDTKVRSAKPEEKEYSLVDGDGMFLLVHPNGSKYWRFRFRFGGKQHLMAFGVYPEVS  60
            MALTD KV++AKP +K Y L DG+GM+LL++ NGSKYWR ++RF+GK+ ++++GVYP+V+
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   LADARQKREAARKLVAAGIDPREQKRAVQEEQAKAV-FTFEFVAREWHA-TNKKWSEEHS  118
            LADAR+KR  ARKL+AAG DP E K+  +  Q  ++  TFE +AREWH     +WS    
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  119  RRVLKSLEDNLFSAIGKRNVAELKTRDLLAPIKTVEQSGRLEVASRLQQRTTAIMRYAVQ  178
              ++ ++E ++F+ IGKR +AE+K   LL +++ +E+ G LE   +++QR   + RYA+ 
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  179  SGLIDYNPAQEMAGAVASSNRQHRPALELKRTPELLQRIDSYTGRPLTRLSVELTLLIFI  238
            +G  DYNPA ++A+A+A++++ H P L  +  P++L+ + +YTG  +T+ + ++ +L  +
Sbjct  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV  240

Query  239  RSSELRFARWSEIDFETSMWTIPPEREPIEGVKHSHRGSKMRTPHLVPLSRQALVILKQI  298
            R+ ELRFARW +IDFET +W IP+E              KM+ PH+VPLS Q ++++KQ+
Sbjct  241  RTQELRFARWEDIDFETKLWEIPAE------------VMKMKRPHIVPLSEQVIMLFKQL  288

Query  299  QQVSGDHELIFIGDHNPRKPMSENTVNNALRVMGYDTKVEVCGHGFRTMACSSLIESGL-  357
            + +S +H L+FIG ++PRKP+S +++N+A+ ++GY  +  + GHGFR    + L E G+ 
Sbjct  289  EPISKHHPLVFIGRNDPRKPISKESINQAIELLGYKGR--LTGHGFRHTMSTILHEQGFN  346

Query  358  --WSRDAVERQMSHMERNSVRAAYIHKAEHLDERRLMLQWWADFLDA  402
              W    +E Q++H+++NS+R +Y H A  LD RR M+QW AD++D+
Sbjct  347  SAW----IEMQLAHVDKNSIRDTYNH-ALYLDGRREMMQWYADYIDS  388

194) ECA2879 in NC_004547


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  309 bits (1157),  Expect = 2e-85, Method: Compositional matrix adjust.
 Identities = 183/412 (45%), Positives = 269/412 (66%), Gaps = 24/412 (5%)

Query  1    MALTDIKVRSAKPEEKPYKLTDGNGMFLLVHTNGSKYWRLRYRSDGKEKTLALGVYPEVS  60
            MALTDIKV++AKP +KPYKL+DG GM+LL++TNGSKYWR++YR  GKEK L++GVYP+V+
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   LSEARQKRDEARKLISAGVDPNEHKKAVKTQQQDD-EQTFEAVARAWHT-DNKKWSESHA  118
            L++AR+KR EARKL++AG DP E KK  K  QQ    +TFEA+AR WH     +WS    
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  119  ERILKSLSDNIFPAIGGTHVANLKTRDLLTPIKSVERSGRLEVAKRLKQRVTAIMTYAVQ  178
            + I+ ++  +IFP IG   +A++K   LL +++ +E+ G LE  ++++QR   +  YA+ 
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  179  NGLIDYNPAQDMAGAIMPGKVEHRPALELDRLPELLGRIDGYKGREFTKWVINLSLLIFI  238
             G  DYNPA D+A+A+   K  H P L  + LP++L  + GY G  +TK   ++ +L  +
Sbjct  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV  240

Query  239  RSSELRFARWPEIDFERSLWTIPPEREPIPGVKFSERGSKMHTPHLVPLSRQALEILKKI  298
            R+ ELRFARW +IDFE  LW IP+E              KM  PH+VPLS Q + ++K++
Sbjct  241  RTQELRFARWEDIDFETKLWEIPAE------------VMKMKRPHIVPLSEQVIMLFKQL  288

Query  299  REVSGHCELVFIGDHSSRKPVSEGTVNKALQTMGYDTKTEVCGHGFRTMACSSLIESGL-  357
              +S H  LVFIG + +RKP+S  ++N+A++ +GY  K  + GHGFR    + L E G+ 
Sbjct  289  EPISKHHPLVFIGRNDPRKPISKESINQAIELLGY--KGRLTGHGFRHTMSTILHEQGFN  346

Query  358  --WSRDAVERQMSHQERNGVRAAYIHKAEHLDERRLMLQWWADFLDANRERA  407
              W    +E Q++H ++N++R +Y H A  LD RR M+QW AD++D+   R 
Sbjct  347  SAW----IEMQLAHVDKNSIRDTYNH-ALYLDGRREMMQWYADYIDSLSSRE  393

195) ECP_4521 in NC_008253


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  309 bits (1157),  Expect = 2e-85, Method: Compositional matrix adjust.
 Identities = 176/407 (44%), Positives = 276/407 (68%), Gaps = 25/407 (6%)

Query  1    MALTDLKVRTAKPADKQYKLTDGGGMHLLVHPNGSKYWRLQYRYEGKQKMLALGVYPEIT  60
            MALTD+KV+TAKP DK YKL+DGGGM LL++ NGSKYWR++YR+ GK+KML++GVYP++T
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   LADARVRRDEARKLLANGVDPGDKKKNDKVEQSKA--RTFKEVAIEWYG-TNKKWSEDHA  117
            LADAR +R EARKLLA G DPG+ KK++K+ Q  +   TF  +A EW      +WS    
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  118  HRVLKSLEDNLFAALGERNIAELKTRDLLAPIKAVEMSGRLEVAARLQQRTTAIMRYAVQ  177
            + ++ ++E ++F+ +G R IAE+K   LL +++ +E  G LE   +++QR   + RYA+ 
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  178  SGLIDYNPAQEMAGAVASCNRQHRPALELKRIPELLTKIDSYTGRPLTRWATELTLLIFI  237
            +G  DYNPA ++A+A+A+ ++ H P L  + +P++L  + +YTG  +T+ AT++ +L  +
Sbjct  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV  240

Query  238  RSSELRFARWSEIDFEASIWTIPPEREPIPGVKHSHRGSKMRTTHLVPLSRQALAILKQI  297
            R+ ELRFARW +IDFE+ +W IP+E              KM+  H+VPLS Q + ++KQ+
Sbjct  241  RTQELRFARWEDIDFETKLWEIPAE------------VMKMKRPHIVPLSEQVIMLFKQL  288

Query  298  KQFCGAHDLIFIGNHDSHKPMSENTVNSALRVMGYDTKVEVCGHGFRTMACSSLIESGL-  356
              +   H L+FIG +D++KP+S +++N A+ ++GY  +  + GHGFR    + L E G+ 
Sbjct  289  EPISKHHPLVFIGRNDPRKPISKESINQAIELLGYKGR--LTGHGFRHTMSTILHEQGFN  346

Query  357  --WSRDAVERQMSHMERNSVRAAYIHKAEHLEERRLMLQWWADFLDA  401
              W    +E Q++H+++NS+R +Y H A  L+ RR M+QW AD++D+
Sbjct  347  SAW----IEMQLAHVDKNSIRDTYNH-ALYLDGRREMMQWYADYIDS  388

196) XBJ1_1315 in NC_013892


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  309 bits (1159),  Expect = 9e-86, Method: Compositional matrix adjust.
 Identities = 167/292 (58%), Positives = 236/292 (81%), Gaps = 0/292 (0%)

Query  1    MKLTARQVDTAKPKEKPYKLADGGGLYLLVNPNGARYWRLKYRIAGKEKLLALGVYPDIS  60
            M LT  +V TAKPK+KPYKLADGGG+YLL+N NG++YWR+KYR+AGKEK+L++GVYPD++
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   LSDARTKRNEARRTLSDGNDPIeekkaekaakaFAVSNSFESIAIEWHEHKRPNWSKGYA  120
            L+DAR KR+EAR+ L+ G DP E KK EK A+  ++ N+FE+IA EWH+ K   WS  Y 
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  121  EDILEYLKKDIFPYIGKRAVTEIKPAEMLAVLRKMEQRGVLDKLKKTRQACRQIFTYAVI  180
            ++I++ + KDIFPYIGKR+++EIKP  +L  LRKME+RG L+K++K RQ C ++F YA++
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  181  TGRAEFNPVTDLASALKAPKQKHFSHLLADQMNAFLVALAGYSGSEVTQSATRLLMLTGV  240
            TGRA++NP  DLASAL +PK+ HF+ L A+++  FL  LAGY+GS +T++AT+++MLTGV
Sbjct  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV  240

Query  241  RTIELRESEWTEFDFDKDIWQIPAERMKMRRPHIVPLSNQVKAILIKLHSIT  292
            RT ELR + W ++DF+  +W+IPAE MKM+RPHIVPLS+QV  ++ +L++I+
Sbjct  241  RTQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPIS  292

197) EKO11_1417 in NC_016902


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  308 bits (1156),  Expect = 2e-85, Method: Compositional matrix adjust.
 Identities = 185/387 (48%), Positives = 268/387 (70%), Gaps = 7/387 (1%)

Query  2    LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTLQ  61
            LT  ++ +AKPK+KPY+L DG G+YL +  +G K W+++Y++ GKEK+L++G YP +TL 
Sbjct  3    LTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVTLA  62

Query  62   EARDKAWTARKDISVGIDPVkakkassnnnsfs------aIYKEWYEHKKQVWSVGYATE  115
            +AR+K   ARK ++ G DP  AKK     +  S      AI +EW + K + WS+ Y  E
Sbjct  63   DAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYRDE  122

Query  116  LAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTG  175
            +   F+ DI+P IG   I +I PM+LLE +R+ E RGA+E+  K R+RCGEVFRYAIVTG
Sbjct  123  IIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIVTG  182

Query  176  RAKYNPAPDLADAMKGYRKKNFPFLPADQIPAFNKALATFSGSIVSLIATKVLRYTALRT  235
            RA YNPAPDLA A+   +K +FPFL A+++P F + LA ++GSI++  AT+++  T++RT
Sbjct  183  RADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGVRT  242

Query  236  KELRSMQWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEFVFAG  295
            +ELR  +W ++DFE ++  I A VMK ++ H+VP+S+QV+ L+  L +I+K  + +VF G
Sbjct  243  QELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHP-LVFIG  301

Query  296  RNDKKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNEHEWPADAIEVQLAHANGGS  355
            RND +KPI  +++   I  +GY G  +GHGFRH  STI++E+   +  IE+QLAH +  S
Sbjct  302  RNDPRKPISKESINQAIELLGYKGRLTGHGFRHTMSTILHEQGFNSAWIEMQLAHVDKNS  361

Query  356  VRGIYNHAQYLDKRREMMQWWADWIDE  382
            +R+ YNHA YLD RREMMQW AD ID 
Sbjct  362  IRDTYNHALYLDGRREMMQWYADYIDS  388

198) UMNK88_2903 in NC_017641


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  308 bits (1156),  Expect = 2e-85, Method: Compositional matrix adjust.
 Identities = 185/387 (48%), Positives = 268/387 (70%), Gaps = 7/387 (1%)

Query  2    LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTLQ  61
            LT  ++ +AKPK+KPY+L DG G+YL +  +G K W+++Y++ GKEK+L++G YP +TL 
Sbjct  3    LTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVTLA  62

Query  62   EARDKAWTARKDISVGIDPVkakkassnnnsfs------aIYKEWYEHKKQVWSVGYATE  115
            +AR+K   ARK ++ G DP  AKK     +  S      AI +EW + K + WS+ Y  E
Sbjct  63   DAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYRDE  122

Query  116  LAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTG  175
            +   F+ DI+P IG   I +I PM+LLE +R+ E RGA+E+  K R+RCGEVFRYAIVTG
Sbjct  123  IIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIVTG  182

Query  176  RAKYNPAPDLADAMKGYRKKNFPFLPADQIPAFNKALATFSGSIVSLIATKVLRYTALRT  235
            RA YNPAPDLA A+   +K +FPFL A+++P F + LA ++GSI++  AT+++  T++RT
Sbjct  183  RADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGVRT  242

Query  236  KELRSMQWKNVDFENRIITIDANVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEFVFAG  295
            +ELR  +W ++DFE ++  I A+VMK ++ H+VP+S+QV+ L+  L +I+K  + +VF G
Sbjct  243  QELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHP-LVFIG  301

Query  296  RNDKKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNEHEWPADAIEKQLAHANSGS  355
            RND +KPI  +++   I  +GY G  +GHGFRH  STI++E+   +  IE QLAH +  S
Sbjct  302  RNDPRKPISKESINQAIELLGYKGRLTGHGFRHTMSTILHEQGFNSAWIEMQLAHVDKNS  361

Query  356  IRGIYNHAQYMDKRREMMQWWADWIDE  382
            IR+ YNHA Y+D RREMMQW AD ID 
Sbjct  362  IRDTYNHALYLDGRREMMQWYADYIDS  388

199) intS in NC_017635


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  308 bits (1156),  Expect = 2e-85, Method: Compositional matrix adjust.
 Identities = 185/387 (48%), Positives = 268/387 (70%), Gaps = 7/387 (1%)

Query  2    LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTLQ  61
            LT  ++ +AKPK+KPY+L DG G+YL +  +G K W+++Y++ GKEK+L++G YP +TL 
Sbjct  3    LTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVTLA  62

Query  62   EARDKAWTARKDISVGIDPVkakkassnnnsfs------aIYKEWYEHKKQVWSVGYATE  115
            +AR+K   ARK ++ G DP  AKK     +  S      AI +EW + K + WS+ Y  E
Sbjct  63   DAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYRDE  122

Query  116  LAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTG  175
            +   F+ DI+P IG   I +I PM+LLE +R+ E RGA+E+  K R+RCGEVFRYAIVTG
Sbjct  123  IIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIVTG  182

Query  176  RAKYNPAPDLADAMKGYRKKNFPFLPADQIPAFNKALATFSGSIVSLIATKVLRYTALRT  235
            RA YNPAPDLA A+   +K +FPFL A+++P F + LA ++GSI++  AT+++  T++RT
Sbjct  183  RADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGVRT  242

Query  236  KELRSMQWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEFVFAG  295
            +ELR  +W ++DFE ++  I A VMK ++ H+VP+S+QV+ L+  L +I+K  + +VF G
Sbjct  243  QELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHP-LVFIG  301

Query  296  RNDKKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNEHEWPADAIEVQLAHANGGS  355
            RND +KPI  +++   I  +GY G  +GHGFRH  STI++E+   +  IE+QLAH +  S
Sbjct  302  RNDPRKPISKESINQAIELLGYKGRLTGHGFRHTMSTILHEQGFNSAWIEMQLAHVDKNS  361

Query  356  VRGIYNHAQYLDKRREMMQWWADWIDE  382
            +R+ YNHA YLD RREMMQW AD ID 
Sbjct  362  IRDTYNHALYLDGRREMMQWYADYIDS  388

200) intS in NC_017664


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  308 bits (1156),  Expect = 2e-85, Method: Compositional matrix adjust.
 Identities = 185/387 (48%), Positives = 268/387 (70%), Gaps = 7/387 (1%)

Query  2    LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTLQ  61
            LT  ++ +AKPK+KPY+L DG G+YL +  +G K W+++Y++ GKEK+L++G YP +TL 
Sbjct  3    LTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVTLA  62

Query  62   EARDKAWTARKDISVGIDPVkakkassnnnsfs------aIYKEWYEHKKQVWSVGYATE  115
            +AR+K   ARK ++ G DP  AKK     +  S      AI +EW + K + WS+ Y  E
Sbjct  63   DAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYRDE  122

Query  116  LAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTG  175
            +   F+ DI+P IG   I +I PM+LLE +R+ E RGA+E+  K R+RCGEVFRYAIVTG
Sbjct  123  IIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIVTG  182

Query  176  RAKYNPAPDLADAMKGYRKKNFPFLPADQIPAFNKALATFSGSIVSLIATKVLRYTALRT  235
            RA YNPAPDLA A+   +K +FPFL A+++P F + LA ++GSI++  AT+++  T++RT
Sbjct  183  RADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGVRT  242

Query  236  KELRSMQWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEFVFAG  295
            +ELR  +W ++DFE ++  I A VMK ++ H+VP+S+QV+ L+  L +I+K  + +VF G
Sbjct  243  QELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHP-LVFIG  301

Query  296  RNDKKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNEHEWPADAIEVQLAHANGGS  355
            RND +KPI  +++   I  +GY G  +GHGFRH  STI++E+   +  IE+QLAH +  S
Sbjct  302  RNDPRKPISKESINQAIELLGYKGRLTGHGFRHTMSTILHEQGFNSAWIEMQLAHVDKNS  361

Query  356  VRGIYNHAQYLDKRREMMQWWADWIDE  382
            +R+ YNHA YLD RREMMQW AD ID 
Sbjct  362  IRDTYNHALYLDGRREMMQWYADYIDS  388

201) intS in NC_011748


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  308 bits (1154),  Expect = 3e-85, Method: Compositional matrix adjust.
 Identities = 185/388 (48%), Positives = 269/388 (70%), Gaps = 7/388 (1%)

Query  2    LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTLQ  61
            LT  ++ +AKPK+KPY+L DG G+YL +  +G K W+++Y++ GKEK+L++G YP +TL 
Sbjct  3    LTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVTLA  62

Query  62   EARDKAWTARKDISVGIDPVkakkassnnnsfs------aIYKEWYEHKKQVWSVGYATE  115
            +AR+K   ARK ++ G DP  AKK     +  S      AI +EW + K + WS+ Y  E
Sbjct  63   DAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYRDE  122

Query  116  LAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTG  175
            +   F+ DI+P IG   I +I PM+LLE +R+ E RGA+E+  K R+RCGEVFRYAIVTG
Sbjct  123  IIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIVTG  182

Query  176  RAKYNPAPDLADAMKGYRKKNFPFLPADQIPAFNKALATFSGSIVSLIATKVLRYTALRT  235
            RA YNPAPDLA A+   +K +FPFL A+++P F + LA ++GSI++  AT+++  T++RT
Sbjct  183  RADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGVRT  242

Query  236  KELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEFVFAG  295
            +ELR   W ++DFE ++  I A VMK ++ H+VP+S+QV+ L+  L +I+K  + +VF G
Sbjct  243  QELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHP-LVFIG  301

Query  296  RNDKKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNEHEWPADAIEVQLAHANGGS  355
            RND +KPI  +++   I  +GY G  +GHGFRH  STI++E+   +  IE+QLAH +  S
Sbjct  302  RNDPRKPISKESINQAIELLGYKGRLTGHGFRHTMSTILHEQGFNSAWIEMQLAHVDKNS  361

Query  356  VRGIYNHAQYLDKRREMMQWWADWLDGL  383
            +R+ YNHA YLD RREMMQW AD +D+L
Sbjct  362  IRDTYNHALYLDGRREMMQWYADYIDSL  389

202) O3M_07705 in NC_018650


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  308 bits (1154),  Expect = 3e-85, Method: Compositional matrix adjust.
 Identities = 185/388 (48%), Positives = 269/388 (70%), Gaps = 7/388 (1%)

Query  2    LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTLQ  61
            LT  ++ +AKPK+KPY+L DG G+YL +  +G K W+++Y++ GKEK+L++G YP +TL 
Sbjct  3    LTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVTLA  62

Query  62   EARDKAWTARKDISVGIDPVkakkassnnnsfs------aIYKEWYEHKKQVWSVGYATE  115
            +AR+K   ARK ++ G DP  AKK     +  S      AI +EW + K + WS+ Y  E
Sbjct  63   DAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYRDE  122

Query  116  LAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTG  175
            +   F+ DI+P IG   I +I PM+LLE +R+ E RGA+E+  K R+RCGEVFRYAIVTG
Sbjct  123  IIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIVTG  182

Query  176  RAKYNPAPDLADAMKGYRKKNFPFLPADQIPAFNKALATFSGSIVSLIATKVLRYTALRT  235
            RA YNPAPDLA A+   +K +FPFL A+++P F + LA ++GSI++  AT+++  T++RT
Sbjct  183  RADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGVRT  242

Query  236  KELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEFVFAG  295
            +ELR   W ++DFE ++  I A VMK ++ H+VP+S+QV+ L+  L +I+K  + +VF G
Sbjct  243  QELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHP-LVFIG  301

Query  296  RNDKKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNEHEWPADAIEVQLAHANGGS  355
            RND +KPI  +++   I  +GY G  +GHGFRH  STI++E+   +  IE+QLAH +  S
Sbjct  302  RNDPRKPISKESINQAIELLGYKGRLTGHGFRHTMSTILHEQGFNSAWIEMQLAHVDKNS  361

Query  356  VRGIYNHAQYLDKRREMMQWWADWLDGL  383
            +R+ YNHA YLD RREMMQW AD +D+L
Sbjct  362  IRDTYNHALYLDGRREMMQWYADYIDSL  389

203) O3O_17880 in NC_018661


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  308 bits (1154),  Expect = 3e-85, Method: Compositional matrix adjust.
 Identities = 185/388 (48%), Positives = 269/388 (70%), Gaps = 7/388 (1%)

Query  2    LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTLQ  61
            LT  ++ +AKPK+KPY+L DG G+YL +  +G K W+++Y++ GKEK+L++G YP +TL 
Sbjct  3    LTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVTLA  62

Query  62   EARDKAWTARKDISVGIDPVkakkassnnnsfs------aIYKEWYEHKKQVWSVGYATE  115
            +AR+K   ARK ++ G DP  AKK     +  S      AI +EW + K + WS+ Y  E
Sbjct  63   DAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYRDE  122

Query  116  LAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTG  175
            +   F+ DI+P IG   I +I PM+LLE +R+ E RGA+E+  K R+RCGEVFRYAIVTG
Sbjct  123  IIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIVTG  182

Query  176  RAKYNPAPDLADAMKGYRKKNFPFLPADQIPAFNKALATFSGSIVSLIATKVLRYTALRT  235
            RA YNPAPDLA A+   +K +FPFL A+++P F + LA ++GSI++  AT+++  T++RT
Sbjct  183  RADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGVRT  242

Query  236  KELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEFVFAG  295
            +ELR   W ++DFE ++  I A VMK ++ H+VP+S+QV+ L+  L +I+K  + +VF G
Sbjct  243  QELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHP-LVFIG  301

Query  296  RNDKKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNEHEWPADAIEVQLAHANGGS  355
            RND +KPI  +++   I  +GY G  +GHGFRH  STI++E+   +  IE+QLAH +  S
Sbjct  302  RNDPRKPISKESINQAIELLGYKGRLTGHGFRHTMSTILHEQGFNSAWIEMQLAHVDKNS  361

Query  356  VRGIYNHAQYLDKRREMMQWWADWLDGL  383
            +R+ YNHA YLD RREMMQW AD +D+L
Sbjct  362  IRDTYNHALYLDGRREMMQWYADYIDSL  389

204) O3K_07755 in NC_018658


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  308 bits (1154),  Expect = 3e-85, Method: Compositional matrix adjust.
 Identities = 185/388 (48%), Positives = 269/388 (70%), Gaps = 7/388 (1%)

Query  2    LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTLQ  61
            LT  ++ +AKPK+KPY+L DG G+YL +  +G K W+++Y++ GKEK+L++G YP +TL 
Sbjct  3    LTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVTLA  62

Query  62   EARDKAWTARKDISVGIDPVkakkassnnnsfs------aIYKEWYEHKKQVWSVGYATE  115
            +AR+K   ARK ++ G DP  AKK     +  S      AI +EW + K + WS+ Y  E
Sbjct  63   DAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYRDE  122

Query  116  LAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTG  175
            +   F+ DI+P IG   I +I PM+LLE +R+ E RGA+E+  K R+RCGEVFRYAIVTG
Sbjct  123  IIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIVTG  182

Query  176  RAKYNPAPDLADAMKGYRKKNFPFLPADQIPAFNKALATFSGSIVSLIATKVLRYTALRT  235
            RA YNPAPDLA A+   +K +FPFL A+++P F + LA ++GSI++  AT+++  T++RT
Sbjct  183  RADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGVRT  242

Query  236  KELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEFVFAG  295
            +ELR   W ++DFE ++  I A VMK ++ H+VP+S+QV+ L+  L +I+K  + +VF G
Sbjct  243  QELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHP-LVFIG  301

Query  296  RNDKKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNEHEWPADAIEVQLAHANGGS  355
            RND +KPI  +++   I  +GY G  +GHGFRH  STI++E+   +  IE+QLAH +  S
Sbjct  302  RNDPRKPISKESINQAIELLGYKGRLTGHGFRHTMSTILHEQGFNSAWIEMQLAHVDKNS  361

Query  356  VRGIYNHAQYLDKRREMMQWWADWLDGL  383
            +R+ YNHA YLD RREMMQW AD +D+L
Sbjct  362  IRDTYNHALYLDGRREMMQWYADYIDSL  389

205) ECABU_c48360 in NC_017631


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  308 bits (1155),  Expect = 3e-85, Method: Compositional matrix adjust.
 Identities = 176/407 (44%), Positives = 276/407 (68%), Gaps = 25/407 (6%)

Query  1    MALTDLKVRTAKPADKQYKLTDGGGMHLLVHPNGSKYWRLQYRYEGKQKMLALGVYPEIT  60
            MALTD+KV+TAKP DK YKL+DGGGM LL++ NGSKYWR++YR+ GK+KML++GVYP++T
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   LADARVRRDEARKLLANGVDPGDKKKNDKVEQSKA--RTFKEVAIEWYG-TNKKWSEDHA  117
            LADAR +R EARKLLA G DPG+ KK++K+ Q  +   TF  +A EW      +WS    
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  118  HRVLKSLEDNLFAALGERNIAELKTRDLLAPIKAVEMSGRLEVAARLQQRTTAIMRYAVQ  177
            + ++ ++E ++F+ +G R IAE+K   LL +++ +E  G LE   +++QR   + RYA+ 
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  178  SGLIDYNPAQEMAGAVASCNRQHRPALELKRIPELLTKIDSYTGRPLTRWATELTLLIFI  237
            +G  DYNPA ++A+A+A+ ++ H P L  + +P++L  + +YTG  +T+ AT++ +L  +
Sbjct  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV  240

Query  238  RSSELRFARWSEIDFEASIWTIPPEREPIPGVKHSHRGSKMRTTHLVPLSRQALAILKQI  297
            R+ ELRFARW +IDFE+ +W IP+E              KM+  H+VPLS Q + ++KQ+
Sbjct  241  RTQELRFARWEDIDFETKLWEIPAE------------VMKMKRPHIVPLSEQVIMLFKQL  288

Query  298  KQFCGAHDLIFIGDHDSHKPMSENTVNSALRVMGYDTKVEVCGHGFRTMACSSLIESGL-  356
              +   H L+FIG +D++KP+S +++N A+ ++GY  +  + GHGFR    + L E G+ 
Sbjct  289  EPISKHHPLVFIGRNDPRKPISKESINQAIELLGYKGR--LTGHGFRHTMSTILHEQGFN  346

Query  357  --WSRDAVERQMSHMERNSVRAAYIHKAEHLEERRLMLQWWADFLDA  401
              W    +E Q++H+++NS+R +Y H A  L+ RR M+QW AD++D+
Sbjct  347  SAW----IEMQLAHVDKNSIRDTYNH-ALYLDGRREMMQWYADYIDS  388

206) UM146_21610 in NC_017632


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  308 bits (1155),  Expect = 3e-85, Method: Compositional matrix adjust.
 Identities = 176/407 (44%), Positives = 276/407 (68%), Gaps = 25/407 (6%)

Query  1    MALTDLKVRTAKPADKQYKLTDGGGMHLLVHPNGSKYWRLQYRYEGKQKMLALGVYPEIT  60
            MALTD+KV+TAKP DK YKL+DGGGM LL++ NGSKYWR++YR+ GK+KML++GVYP++T
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   LADARVRRDEARKLLANGVDPGDKKKNDKVEQSKA--RTFKEVAIEWYG-TNKKWSEDHA  117
            LADAR +R EARKLLA G DPG+ KK++K+ Q  +   TF  +A EW      +WS    
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  118  HRVLKSLEDNLFAALGERNIAELKTRDLLAPIKAVEMSGRLEVAARLQQRTTAIMRYAVQ  177
            + ++ ++E ++F+ +G R IAE+K   LL +++ +E  G LE   +++QR   + RYA+ 
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  178  SGLIDYNPAQEMAGAVASCNRQHRPALELKRIPELLTKIDSYTGRPLTRWATELTLLIFI  237
            +G  DYNPA ++A+A+A+ ++ H P L  + +P++L  + +YTG  +T+ AT++ +L  +
Sbjct  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV  240

Query  238  RSSELRFARWSEIDFEASIWTIPPEREPIPGVKHSHRGSKMRTTHLVPLSRQALAILKQI  297
            R+ ELRFARW +IDFE+ +W IP+E              KM+  H+VPLS Q + ++KQ+
Sbjct  241  RTQELRFARWEDIDFETKLWEIPAE------------VMKMKRPHIVPLSEQVIMLFKQL  288

Query  298  KQFCGAHDLIFIGDHDSHKPMSENTVNSALRVMGYDTKVEVCGHGFRTMACSSLIESGL-  356
              +   H L+FIG +D++KP+S +++N A+ ++GY  +  + GHGFR    + L E G+ 
Sbjct  289  EPISKHHPLVFIGRNDPRKPISKESINQAIELLGYKGR--LTGHGFRHTMSTILHEQGFN  346

Query  357  --WSRDAVERQMSHMERNSVRAAYIHKAEHLEERRLMLQWWADFLDA  401
              W    +E Q++H+++NS+R +Y H A  L+ RR M+QW AD++D+
Sbjct  347  SAW----IEMQLAHVDKNSIRDTYNH-ALYLDGRREMMQWYADYIDS  388

207) KO11_23100 in NC_017660


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  308 bits (1154),  Expect = 3e-85, Method: Compositional matrix adjust.
 Identities = 172/407 (43%), Positives = 280/407 (69%), Gaps = 24/407 (5%)

Query  1    MALSDVKVRSAKPEAKAYKLTDGEGMVLLVHPNGSKYWRLRYRFGGKEKMLALGKYPEVS  60
            MAL+D+KV++AKP  K+YKL+DG GM LL++ NGSKYWR++YRF+GKEKML++G YP+V+
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   LVDARGRRDEARKLLANGVDPSENKKAVKVEHEQEV-ITFEVVAREWHA-SNQKWSASHS  118
            L DAR +R EARKLLA G DP+E KK  K+ ++  +  TFE +AREWH    ++WS    
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  119  ARVLKSLEDNLFAAIGKRNIADLKTRDLLVPIKAVESSGRLEVAARLQQHTTAIIRFAVQ  178
              ++ ++E ++F+ IGKR IA++K   LL +++ +E  G LE   +++Q+   ++R+A+ 
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  179  SGLIDYNPAQEIAGAVATAKRQHRAALELNRIPELLQRIYHYSGRPLTRLAVELTLLVFI  238
            +G  DYNPA ++A+A+AT+K+ H + L  N +P++L+ +  Y+G  +T+ A ++ +L  +
Sbjct  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV  240

Query  239  RSSELRFARWSEVDFDTAMWTIPGEREPLEGVKHSQRGSKMRTPHLVPLSRQALTILEKI  298
            R+ ELRFARW ++DF+T +W IP+E              KM+ PH+VPLS Q + ++ ++
Sbjct  241  RTQELRFARWEDIDFETKLWEIPAE------------VMKMKRPHIVPLSEQVIMLFKQL  288

Query  299  KSMSGNRELIFVGDHDPRKPMSENTLNKALRVMGYDTKTEVCGHGFRTMACSSLIESGL-  357
             ++S ++ L+F+G +DPRKP+S +++N+A+ ++GY  K  + GHGFR    + L E G+ 
Sbjct  289  EPISKHHPLVFIGRNDPRKPISKESINQAIELLGY--KGRLTGHGFRHTMSTILHEQGFN  346

Query  358  --WSRDAVERQMSHQERSSVRAAYIHKAEHLGERMLMLQWWADYLDA  402
              W    +E Q++H +++S+R +Y H A  L+ R  M+QW ADY+D+
Sbjct  347  SAW----IEMQLAHVDKNSIRDTYNH-ALYLDGRREMMQWYADYIDS  388

208) EKO11_4021 in NC_016902


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  308 bits (1154),  Expect = 3e-85, Method: Compositional matrix adjust.
 Identities = 172/407 (43%), Positives = 280/407 (69%), Gaps = 24/407 (5%)

Query  1    MALSDVKVRSAKPEAKAYKLTDGEGMVLLVHPNGSKYWRLRYRFGGKEKMLALGKYPEVS  60
            MAL+D+KV++AKP  K+YKL+DG GM LL++ NGSKYWR++YRF+GKEKML++G YP+V+
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   LVDARGRRDEARKLLANGVDPSENKKAVKVEHEQEV-ITFEVVAREWHA-SNQKWSASHS  118
            L DAR +R EARKLLA G DP+E KK  K+ ++  +  TFE +AREWH    ++WS    
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  119  ARVLKSLEDNLFAAIGKRNIADLKTRDLLVPIKAVESSGRLEVAARLQQHTTAIIRFAVQ  178
              ++ ++E ++F+ IGKR IA++K   LL +++ +E  G LE   +++Q+   ++R+A+ 
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  179  SGLIDYNPAQEIAGAVATAKRQHRAALELNRIPELLQRIYHYSGRPLTRLAVELTLLVFI  238
            +G  DYNPA ++A+A+AT+K+ H + L  N +P++L+ +  Y+G  +T+ A ++ +L  +
Sbjct  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV  240

Query  239  RSSELRFARWSEVDFDTAMWTIPGEREPLEGVKHSQRGSKMRTPHLVPLSRQALTILEKI  298
            R+ ELRFARW ++DF+T +W IP+E              KM+ PH+VPLS Q + ++ ++
Sbjct  241  RTQELRFARWEDIDFETKLWEIPAE------------VMKMKRPHIVPLSEQVIMLFKQL  288

Query  299  KSMSGNRELIFVGDHDPRKPMSENTLNKALRVMGYDTKTEVCGHGFRTMACSSLIESGL-  357
             ++S ++ L+F+G +DPRKP+S +++N+A+ ++GY  K  + GHGFR    + L E G+ 
Sbjct  289  EPISKHHPLVFIGRNDPRKPISKESINQAIELLGY--KGRLTGHGFRHTMSTILHEQGFN  346

Query  358  --WSRDAVERQMSHQERSSVRAAYIHKAEHLGERMLMLQWWADYLDA  402
              W    +E Q++H +++S+R +Y H A  L+ R  M+QW ADY+D+
Sbjct  347  SAW----IEMQLAHVDKNSIRDTYNH-ALYLDGRREMMQWYADYIDS  388

209) LY180_22530 in NC_022364


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  308 bits (1154),  Expect = 3e-85, Method: Compositional matrix adjust.
 Identities = 172/407 (43%), Positives = 280/407 (69%), Gaps = 24/407 (5%)

Query  1    MALSDVKVRSAKPEAKAYKLTDGEGMVLLVHPNGSKYWRLRYRFGGKEKMLALGKYPEVS  60
            MAL+D+KV++AKP  K+YKL+DG GM LL++ NGSKYWR++YRF+GKEKML++G YP+V+
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   LVDARGRRDEARKLLANGVDPSENKKAVKVEHEQEV-ITFEVVAREWHA-SNQKWSASHS  118
            L DAR +R EARKLLA G DP+E KK  K+ ++  +  TFE +AREWH    ++WS    
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  119  ARVLKSLEDNLFAAIGKRNIADLKTRDLLVPIKAVESSGRLEVAARLQQHTTAIIRFAVQ  178
              ++ ++E ++F+ IGKR IA++K   LL +++ +E  G LE   +++Q+   ++R+A+ 
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  179  SGLIDYNPAQEIAGAVATAKRQHRAALELNRIPELLQRIYHYSGRPLTRLAVELTLLVFI  238
            +G  DYNPA ++A+A+AT+K+ H + L  N +P++L+ +  Y+G  +T+ A ++ +L  +
Sbjct  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV  240

Query  239  RSSELRFARWSEVDFDTAMWTIPGEREPLEGVKHSQRGSKMRTPHLVPLSRQALTILEKI  298
            R+ ELRFARW ++DF+T +W IP+E              KM+ PH+VPLS Q + ++ ++
Sbjct  241  RTQELRFARWEDIDFETKLWEIPAE------------VMKMKRPHIVPLSEQVIMLFKQL  288

Query  299  KSMSGNRELIFVGDHDPRKPMSENTLNKALRVMGYDTKTEVCGHGFRTMACSSLIESGL-  357
             ++S ++ L+F+G +DPRKP+S +++N+A+ ++GY  K  + GHGFR    + L E G+ 
Sbjct  289  EPISKHHPLVFIGRNDPRKPISKESINQAIELLGY--KGRLTGHGFRHTMSTILHEQGFN  346

Query  358  --WSRDAVERQMSHQERSSVRAAYIHKAEHLGERMLMLQWWADYLDA  402
              W    +E Q++H +++S+R +Y H A  L+ R  M+QW ADY+D+
Sbjct  347  SAW----IEMQLAHVDKNSIRDTYNH-ALYLDGRREMMQWYADYIDS  388

210) ECW_m4652 in NC_017635


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  308 bits (1154),  Expect = 3e-85, Method: Compositional matrix adjust.
 Identities = 172/407 (43%), Positives = 280/407 (69%), Gaps = 24/407 (5%)

Query  1    MALSDVKVRSAKPEAKAYKLTDGEGMVLLVHPNGSKYWRLRYRFGGKEKMLALGKYPEVS  60
            MAL+D+KV++AKP  K+YKL+DG GM LL++ NGSKYWR++YRF+GKEKML++G YP+V+
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   LVDARGRRDEARKLLANGVDPSENKKAVKVEHEQEV-ITFEVVAREWHA-SNQKWSASHS  118
            L DAR +R EARKLLA G DP+E KK  K+ ++  +  TFE +AREWH    ++WS    
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  119  ARVLKSLEDNLFAAIGKRNIADLKTRDLLVPIKAVESSGRLEVAARLQQHTTAIIRFAVQ  178
              ++ ++E ++F+ IGKR IA++K   LL +++ +E  G LE   +++Q+   ++R+A+ 
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  179  SGLIDYNPAQEIAGAVATAKRQHRAALELNRIPELLQRIYHYSGRPLTRLAVELTLLVFI  238
            +G  DYNPA ++A+A+AT+K+ H + L  N +P++L+ +  Y+G  +T+ A ++ +L  +
Sbjct  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV  240

Query  239  RSSELRFARWSEVDFDTAMWTIPGEREPLEGVKHSQRGSKMRTPHLVPLSRQALTILEKI  298
            R+ ELRFARW ++DF+T +W IP+E              KM+ PH+VPLS Q + ++ ++
Sbjct  241  RTQELRFARWEDIDFETKLWEIPAE------------VMKMKRPHIVPLSEQVIMLFKQL  288

Query  299  KSMSGNRELIFVGDHDPRKPMSENTLNKALRVMGYDTKTEVCGHGFRTMACSSLIESGL-  357
             ++S ++ L+F+G +DPRKP+S +++N+A+ ++GY  K  + GHGFR    + L E G+ 
Sbjct  289  EPISKHHPLVFIGRNDPRKPISKESINQAIELLGY--KGRLTGHGFRHTMSTILHEQGFN  346

Query  358  --WSRDAVERQMSHQERSSVRAAYIHKAEHLGERMLMLQWWADYLDA  402
              W    +E Q++H +++S+R +Y H A  L+ R  M+QW ADY+D+
Sbjct  347  SAW----IEMQLAHVDKNSIRDTYNH-ALYLDGRREMMQWYADYIDS  388

211) WFL_22655 in NC_017664


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  308 bits (1154),  Expect = 3e-85, Method: Compositional matrix adjust.
 Identities = 172/407 (43%), Positives = 280/407 (69%), Gaps = 24/407 (5%)

Query  1    MALSDVKVRSAKPEAKAYKLTDGEGMVLLVHPNGSKYWRLRYRFGGKEKMLALGKYPEVS  60
            MAL+D+KV++AKP  K+YKL+DG GM LL++ NGSKYWR++YRF+GKEKML++G YP+V+
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   LVDARGRRDEARKLLANGVDPSENKKAVKVEHEQEV-ITFEVVAREWHA-SNQKWSASHS  118
            L DAR +R EARKLLA G DP+E KK  K+ ++  +  TFE +AREWH    ++WS    
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  119  ARVLKSLEDNLFAAIGKRNIADLKTRDLLVPIKAVESSGRLEVAARLQQHTTAIIRFAVQ  178
              ++ ++E ++F+ IGKR IA++K   LL +++ +E  G LE   +++Q+   ++R+A+ 
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  179  SGLIDYNPAQEIAGAVATAKRQHRAALELNRIPELLQRIYHYSGRPLTRLAVELTLLVFI  238
            +G  DYNPA ++A+A+AT+K+ H + L  N +P++L+ +  Y+G  +T+ A ++ +L  +
Sbjct  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV  240

Query  239  RSSELRFARWSEVDFDTAMWTIPGEREPLEGVKHSQRGSKMRTPHLVPLSRQALTILEKI  298
            R+ ELRFARW ++DF+T +W IP+E              KM+ PH+VPLS Q + ++ ++
Sbjct  241  RTQELRFARWEDIDFETKLWEIPAE------------VMKMKRPHIVPLSEQVIMLFKQL  288

Query  299  KSMSGNRELIFVGDHDPRKPMSENTLNKALRVMGYDTKTEVCGHGFRTMACSSLIESGL-  357
             ++S ++ L+F+G +DPRKP+S +++N+A+ ++GY  K  + GHGFR    + L E G+ 
Sbjct  289  EPISKHHPLVFIGRNDPRKPISKESINQAIELLGY--KGRLTGHGFRHTMSTILHEQGFN  346

Query  358  --WSRDAVERQMSHQERSSVRAAYIHKAEHLGERMLMLQWWADYLDA  402
              W    +E Q++H +++S+R +Y H A  L+ R  M+QW ADY+D+
Sbjct  347  SAW----IEMQLAHVDKNSIRDTYNH-ALYLDGRREMMQWYADYIDS  388

212) ECO26_3335 in NC_013361


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  308 bits (1153),  Expect = 4e-85, Method: Compositional matrix adjust.
 Identities = 184/387 (48%), Positives = 269/387 (70%), Gaps = 7/387 (1%)

Query  2    LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTLQ  61
            LT  ++ +AKPK+KPY+L DG G+YL +  +G K W+++Y++ GKEK+L++G YP +TL 
Sbjct  3    LTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVTLA  62

Query  62   EARDKAWTARKDISVGIDPVkakkassnnnsfs------aIYKEWYEHKKQVWSVGYATE  115
            +AR+K   ARK ++ G DP  AKK     +  S      AI +EW + K + WS+ Y  E
Sbjct  63   DAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYRDE  122

Query  116  LAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTG  175
            +   F+ DI+P IG   I +I PM+LLE +R+ E RGA+E+  K R+RCGEVFRYAIVTG
Sbjct  123  IIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIVTG  182

Query  176  RAKYNPAPDLADAMRGYRKKNFPFLPADQIPAFNKALATFSGSIVSLIATKVLRYTALRT  235
            RA YNPAPDLA A+   +K +FPFL A+++P F + LA ++GSI++  AT+++  T++RT
Sbjct  183  RADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGVRT  242

Query  236  KELRSMQWKNVDFENRIITIDANVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEFVFAG  295
            +ELR  +W ++DFE ++  I A+VMK ++ H+VP+S+QV+ L+  L +I+K  + +VF G
Sbjct  243  QELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHP-LVFIG  301

Query  296  RNDKKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNEHEWPADAIEVQLAHANGGS  355
            RND +KPI  +++   I  +GY G  +GHGFRH  STI++E+   +  IE+QLAH +  S
Sbjct  302  RNDPRKPISKESINQAIELLGYKGRLTGHGFRHTMSTILHEQGFNSAWIEMQLAHVDKNS  361

Query  356  VRGIYNHAQYLDKRREMMQWWADWLDE  382
            +R+ YNHA YLD RREMMQW AD +D 
Sbjct  362  IRDTYNHALYLDGRREMMQWYADYIDS  388

213) intS in NC_011750


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  307 bits (1150),  Expect = 6e-85, Method: Compositional matrix adjust.
 Identities = 184/387 (48%), Positives = 267/387 (69%), Gaps = 7/387 (1%)

Query  2    LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTLQ  61
            LT  ++ +AKPK+KPY+L DG G+YL +  +G K W+++Y++ GKEK+L++G YP +TL 
Sbjct  3    LTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVTLA  62

Query  62   EARDKAWTARKDISVGIDPVkakkassnnnsfs------aIYKEWYEHKKQVWSVGYATE  115
            +AR+K   ARK ++ G DP  AKK     +  S      AI +EW + K + WS+ Y  E
Sbjct  63   DAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYRDE  122

Query  116  LAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTG  175
            +   F+ DI+P IG   I +I PM+LLE +R+ E RGA+E+  K R+RCGEVFRYAIVTG
Sbjct  123  IIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIVTG  182

Query  176  RAKYNPAPDLADAMKGYRKKNFPFLPADQIPAFNKALATFSGSIVSLIATKVLRYTALRT  235
            RA YNPAPDLA A+   +K +FPFL A+++P F + LA ++GSI++  AT+++  T++RT
Sbjct  183  RADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGVRT  242

Query  236  KELRSMQWKSVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEFVFAG  295
            +ELR  +W  +DFE ++  I A VMK ++ H+VP+S+QV+ L+  L +I+K  + +VF G
Sbjct  243  QELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHP-LVFIG  301

Query  296  RNDKKKPICDNAVLLVIKQIGYEGLESGHGFRHEFSTIMNEHEWPADAIEVQLAHANGGS  355
            RND +KPI  +++   I  +GY G  +GHGFRH  STI++E+   +  IE+QLAH +  S
Sbjct  302  RNDPRKPISKESINQAIELLGYKGRLTGHGFRHTMSTILHEQGFNSAWIEMQLAHVDKNS  361

Query  356  VRGIYNHAQYLDKRREMMQWWADWLDE  382
            +R+ YNHA YLD RREMMQW AD +D 
Sbjct  362  IRDTYNHALYLDGRREMMQWYADYIDS  388

214) CE10_2735 in NC_017646


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  307 bits (1150),  Expect = 6e-85, Method: Compositional matrix adjust.
 Identities = 184/387 (48%), Positives = 267/387 (69%), Gaps = 7/387 (1%)

Query  2    LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTLQ  61
            LT  ++ +AKPK+KPY+L DG G+YL +  +G K W+++Y++ GKEK+L++G YP +TL 
Sbjct  3    LTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVTLA  62

Query  62   EARDKAWTARKDISVGIDPVkakkassnnnsfs------aIYKEWYEHKKQVWSVGYATE  115
            +AR+K   ARK ++ G DP  AKK     +  S      AI +EW + K + WS+ Y  E
Sbjct  63   DAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYRDE  122

Query  116  LAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTG  175
            +   F+ DI+P IG   I +I PM+LLE +R+ E RGA+E+  K R+RCGEVFRYAIVTG
Sbjct  123  IIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIVTG  182

Query  176  RAKYNPAPDLADAMKGYRKKNFPFLPADQIPAFNKALATFSGSIVSLIATKVLRYTALRT  235
            RA YNPAPDLA A+   +K +FPFL A+++P F + LA ++GSI++  AT+++  T++RT
Sbjct  183  RADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGVRT  242

Query  236  KELRSMQWKSVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEFVFAG  295
            +ELR  +W  +DFE ++  I A VMK ++ H+VP+S+QV+ L+  L +I+K  + +VF G
Sbjct  243  QELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHP-LVFIG  301

Query  296  RNDKKKPICDNAVLLVIKQIGYEGLESGHGFRHEFSTIMNEHEWPADAIEVQLAHANGGS  355
            RND +KPI  +++   I  +GY G  +GHGFRH  STI++E+   +  IE+QLAH +  S
Sbjct  302  RNDPRKPISKESINQAIELLGYKGRLTGHGFRHTMSTILHEQGFNSAWIEMQLAHVDKNS  361

Query  356  VRGIYNHAQYLDKRREMMQWWADWLDE  382
            +R+ YNHA YLD RREMMQW AD +D 
Sbjct  362  IRDTYNHALYLDGRREMMQWYADYIDS  388

215) APECO78_02320 in NC_020163


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  307 bits (1150),  Expect = 8e-85, Method: Compositional matrix adjust.
 Identities = 175/406 (44%), Positives = 275/406 (68%), Gaps = 25/406 (6%)

Query  1    MALTDIKVRAAKPTDKQYKLTDGGGMHLLVHPNGSKYWRLQYRYEGKQKMLALGVYPEIT  60
            MALTDIKV++AKP DK YKL+DGGGM LL++ NGSKYWR++YR+ GK+KML++GVYP++T
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   LADARVRRDEARNLLANGVDPGDKKKNDKVEQSKA--RTFKEVAIEWHG-TNKKWSEDHA  117
            LADAR +R EAR+LLA G DPG+ KK++K+ Q  +   TF  +A EWH     +WS    
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  118  HRVLKSLEDNLFAALGERNIAELKTRDLLAPIKAVEMSGRLEVAARLQQRTTAIMRYAVQ  177
            + ++ ++E ++F+ +G R IAE+K   LL +++ +E  G LE   +++QR   + RYA+ 
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  178  SGLIDYNPAQEMAGAVASCNRQHRPALELKRIPELLTKIDSYTGRPLTRWAIELTLLIFI  237
            +G  DYNPA ++A+A+A+ ++ H P L  + +P++L  + +YTG  +T+ A ++ +L  +
Sbjct  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV  240

Query  238  RSSELRFARWSEIDFEASIWTIPPEREPIPGVKHSHRGSKMRTTHLVPLSTQALAILKQI  297
            R+ ELRFARW +IDFE+ +W IP+E              KM+  H+VPLS Q + ++KQ+
Sbjct  241  RTQELRFARWEDIDFETKLWEIPAE------------VMKMKRPHIVPLSEQVIMLFKQL  288

Query  298  KQFYGAHDLIFIGDHDSHKPMSENTVNSALRVMGYDTKVEVCGHGFRTMACSSLVESGL-  356
              +   H L+FIG +D++KP+S +++N A+ ++GY  +  + GHGFR    + L E G+ 
Sbjct  289  EPISKHHPLVFIGRNDPRKPISKESINQAIELLGYKGR--LTGHGFRHTMSTILHEQGFN  346

Query  357  --WSRDAVERQMSHMERNSVRAAYIHKAEHLEERRLMLQWWADFLD  400
              W    +E Q++H+++NS+R +Y H A  L+ RR M+QW AD++D
Sbjct  347  SAW----IEMQLAHVDKNSIRDTYNH-ALYLDGRREMMQWYADYID  387

216) CE10_5017 in NC_017646


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  307 bits (1150),  Expect = 8e-85, Method: Compositional matrix adjust.
 Identities = 175/406 (44%), Positives = 275/406 (68%), Gaps = 25/406 (6%)

Query  1    MALTDIKVRAAKPTDKQYKLTDGGGMHLLVHPNGSKYWRLQYRYEGKQKMLALGVYPEIT  60
            MALTDIKV++AKP DK YKL+DGGGM LL++ NGSKYWR++YR+ GK+KML++GVYP++T
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   LADARVRRDEARNLLANGVDPGDKKKNDKVEQSKA--RTFKEVAIEWHG-TNKKWSEDHA  117
            LADAR +R EAR+LLA G DPG+ KK++K+ Q  +   TF  +A EWH     +WS    
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  118  HRVLKSLEDNLFAALGERNIAELKTRDLLAPIKAVEMSGRLEVAARLQQRTTAIMRYAVQ  177
            + ++ ++E ++F+ +G R IAE+K   LL +++ +E  G LE   +++QR   + RYA+ 
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  178  SGLIDYNPAQEMAGAVASCNRQHRPALELKRIPELLTKIDSYTGRPLTRWAIELTLLIFI  237
            +G  DYNPA ++A+A+A+ ++ H P L  + +P++L  + +YTG  +T+ A ++ +L  +
Sbjct  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV  240

Query  238  RSSELRFARWSEIDFEASIWTIPPEREPIPGVKHSHRGSKMRTTHLVPLSTQALAILKQI  297
            R+ ELRFARW +IDFE+ +W IP+E              KM+  H+VPLS Q + ++KQ+
Sbjct  241  RTQELRFARWEDIDFETKLWEIPAE------------VMKMKRPHIVPLSEQVIMLFKQL  288

Query  298  KQFYGAHDLIFIGDHDSHKPMSENTVNSALRVMGYDTKVEVCGHGFRTMACSSLVESGL-  356
              +   H L+FIG +D++KP+S +++N A+ ++GY  +  + GHGFR    + L E G+ 
Sbjct  289  EPISKHHPLVFIGRNDPRKPISKESINQAIELLGYKGR--LTGHGFRHTMSTILHEQGFN  346

Query  357  --WSRDAVERQMSHMERNSVRAAYIHKAEHLEERRLMLQWWADFLD  400
              W    +E Q++H+++NS+R +Y H A  L+ RR M+QW AD++D
Sbjct  347  SAW----IEMQLAHVDKNSIRDTYNH-ALYLDGRREMMQWYADYID  387

217) intB in NC_007946


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  307 bits (1150),  Expect = 8e-85, Method: Compositional matrix adjust.
 Identities = 175/407 (43%), Positives = 275/407 (68%), Gaps = 25/407 (6%)

Query  1    MALTDLKVRTAKPADKQYKLTDGGGMHLLVHPNGSKYWRLQYRYEGKQKMLALGVYPEIT  60
            MALTD+KV+TAKP DK YKL+DGGGM LL++ NGSKYWR++YR+ GK+KML++GVYP++T
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   LADARVRRDEARKLLANGVAPGDKKKNDKVEQSKA--RTFKEVAIEWYG-TNKKWSEDHA  117
            LADAR +R EARKLLA G  PG+ KK++K+ Q  +   TF  +A EW      +WS    
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  118  HRVLKSLEDNLFAALGERNIAELKTRDLLAPIKAVEMSGRLEVAARLQQRTTAIMRYAVQ  177
            + ++ ++E ++F+ +G R IAE+K   LL +++ +E  G LE   +++QR   + RYA+ 
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  178  SGLIDYNPAQEMAGAVASCNRQHRPALELKRIPELLTKIDSYTGRPLTRWATELTLLIFI  237
            +G  DYNPA ++A+A+A+ ++ H P L  + +P++L  + +YTG  +T+ AT++ +L  +
Sbjct  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV  240

Query  238  RSSELRFARWSEIDFEASIWTIPPEREPIPGVKHSHRGSKMRTTHLVPLSRQALAILKQI  297
            R+ ELRFARW +IDFE+ +W IP+E              KM+  H+VPLS Q + ++KQ+
Sbjct  241  RTQELRFARWEDIDFETKLWEIPAE------------VMKMKRPHIVPLSEQVIMLFKQL  288

Query  298  KQFCGAHDLIFIGDHDSHKPMSENTVNSALRVMGYDTKVEVCGHGFRTMACSSLIESGL-  356
              +   H L+FIG +D++KP+S +++N A+ ++GY  +  + GHGFR    + L E G+ 
Sbjct  289  EPISKHHPLVFIGRNDPRKPISKESINQAIELLGYKGR--LTGHGFRHTMSTILHEQGFN  346

Query  357  --WSRDAVERQMSHMERNSVRAAYIHKAEHLEERRLMLQWWADFLDA  401
              W    +E Q++H+++NS+R +Y H A  L+ RR M+QW AD++D+
Sbjct  347  SAW----IEMQLAHVDKNSIRDTYNH-ALYLDGRREMMQWYADYIDS  388

218) APECO1_4218 in NC_008563


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  306 bits (1146),  Expect = 1e-84, Method: Compositional matrix adjust.
 Identities = 184/387 (48%), Positives = 267/387 (69%), Gaps = 7/387 (1%)

Query  2    LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTLQ  61
            LT  ++ +AKPK+KPY+L DG G+YL +  +G K W+++Y++ GKEK+L++G YP +TL 
Sbjct  3    LTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVTLA  62

Query  62   EARDKAWTARKDISVGIDPVkakkassnnnsfs------aIYKEWYEHKKQVWSVGYATE  115
            +AR+K   ARK ++ G DP  AKK     +  S      AI +EW + K + WS+ Y  E
Sbjct  63   DAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYRDE  122

Query  116  LAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTG  175
            +   F+ DI+P IG   I +I PM+LLE +R+ E RGA+E+  K R+RCGEVFRYAIVTG
Sbjct  123  IIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIVTG  182

Query  176  RAKYNPAPDLADAMKGYRKKNFPFLPADQIPAFNKALATFSGSIVSLIATKVLRYTALRT  235
            RA YNPAPDLA A+   +K +FPFL A+++P F + LA ++GSI++  AT+++  T++RT
Sbjct  183  RADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGVRT  242

Query  236  KELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEFVFAG  295
            +ELR   W ++DFE ++  I A VMK ++ H+VP+S+QV+ L+  L +I+K  + +VF G
Sbjct  243  QELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHP-LVFIG  301

Query  296  RNDKKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNEHEWPADAIEVQLAHANGGS  355
            RND +KPI  +++   I  +GY G  +GHGFRH  STI++E+   +  IE+QLAH +  S
Sbjct  302  RNDPRKPISKESINQAIELLGYKGRLTGHGFRHTMSTILHEQGFNSAWIEMQLAHVDKNS  361

Query  356  VRGIYNHAQYLDKRREMMQWWADWLDE  382
            +R+ YNHA YLD RREMMQW AD +D 
Sbjct  362  IRDTYNHALYLDGRREMMQWYADYIDS  388

219) intS in NC_012759


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  306 bits (1146),  Expect = 1e-84, Method: Compositional matrix adjust.
 Identities = 184/387 (48%), Positives = 267/387 (69%), Gaps = 7/387 (1%)

Query  2    LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTLQ  61
            LT  ++ +AKPK+KPY+L DG G+YL +  +G K W+++Y++ GKEK+L++G YP +TL 
Sbjct  3    LTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVTLA  62

Query  62   EARDKAWTARKDISVGIDPVkakkassnnnsfs------aIYKEWYEHKKQVWSVGYATE  115
            +AR+K   ARK ++ G DP  AKK     +  S      AI +EW + K + WS+ Y  E
Sbjct  63   DAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYRDE  122

Query  116  LAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTG  175
            +   F+ DI+P IG   I +I PM+LLE +R+ E RGA+E+  K R+RCGEVFRYAIVTG
Sbjct  123  IIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIVTG  182

Query  176  RAKYNPAPDLADAMKGYRKKNFPFLPADQIPAFNKALATFSGSIVSLIATKVLRYTALRT  235
            RA YNPAPDLA A+   +K +FPFL A+++P F + LA ++GSI++  AT+++  T++RT
Sbjct  183  RADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGVRT  242

Query  236  KELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEFVFAG  295
            +ELR   W ++DFE ++  I A VMK ++ H+VP+S+QV+ L+  L +I+K  + +VF G
Sbjct  243  QELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHP-LVFIG  301

Query  296  RNDKKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNEHEWPADAIEVQLAHANGGS  355
            RND +KPI  +++   I  +GY G  +GHGFRH  STI++E+   +  IE+QLAH +  S
Sbjct  302  RNDPRKPISKESINQAIELLGYKGRLTGHGFRHTMSTILHEQGFNSAWIEMQLAHVDKNS  361

Query  356  VRGIYNHAQYLDKRREMMQWWADWLDE  382
            +R+ YNHA YLD RREMMQW AD +D 
Sbjct  362  IRDTYNHALYLDGRREMMQWYADYIDS  388

220) EcDH1_1309 in NC_017625


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  306 bits (1146),  Expect = 1e-84, Method: Compositional matrix adjust.
 Identities = 184/387 (48%), Positives = 267/387 (69%), Gaps = 7/387 (1%)

Query  2    LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTLQ  61
            LT  ++ +AKPK+KPY+L DG G+YL +  +G K W+++Y++ GKEK+L++G YP +TL 
Sbjct  3    LTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVTLA  62

Query  62   EARDKAWTARKDISVGIDPVkakkassnnnsfs------aIYKEWYEHKKQVWSVGYATE  115
            +AR+K   ARK ++ G DP  AKK     +  S      AI +EW + K + WS+ Y  E
Sbjct  63   DAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYRDE  122

Query  116  LAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTG  175
            +   F+ DI+P IG   I +I PM+LLE +R+ E RGA+E+  K R+RCGEVFRYAIVTG
Sbjct  123  IIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIVTG  182

Query  176  RAKYNPAPDLADAMKGYRKKNFPFLPADQIPAFNKALATFSGSIVSLIATKVLRYTALRT  235
            RA YNPAPDLA A+   +K +FPFL A+++P F + LA ++GSI++  AT+++  T++RT
Sbjct  183  RADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGVRT  242

Query  236  KELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEFVFAG  295
            +ELR   W ++DFE ++  I A VMK ++ H+VP+S+QV+ L+  L +I+K  + +VF G
Sbjct  243  QELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHP-LVFIG  301

Query  296  RNDKKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNEHEWPADAIEVQLAHANGGS  355
            RND +KPI  +++   I  +GY G  +GHGFRH  STI++E+   +  IE+QLAH +  S
Sbjct  302  RNDPRKPISKESINQAIELLGYKGRLTGHGFRHTMSTILHEQGFNSAWIEMQLAHVDKNS  361

Query  356  VRGIYNHAQYLDKRREMMQWWADWLDE  382
            +R+ YNHA YLD RREMMQW AD +D 
Sbjct  362  IRDTYNHALYLDGRREMMQWYADYIDS  388

221) intS in NC_017638


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  306 bits (1146),  Expect = 1e-84, Method: Compositional matrix adjust.
 Identities = 184/387 (48%), Positives = 267/387 (69%), Gaps = 7/387 (1%)

Query  2    LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTLQ  61
            LT  ++ +AKPK+KPY+L DG G+YL +  +G K W+++Y++ GKEK+L++G YP +TL 
Sbjct  3    LTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVTLA  62

Query  62   EARDKAWTARKDISVGIDPVkakkassnnnsfs------aIYKEWYEHKKQVWSVGYATE  115
            +AR+K   ARK ++ G DP  AKK     +  S      AI +EW + K + WS+ Y  E
Sbjct  63   DAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYRDE  122

Query  116  LAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTG  175
            +   F+ DI+P IG   I +I PM+LLE +R+ E RGA+E+  K R+RCGEVFRYAIVTG
Sbjct  123  IIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIVTG  182

Query  176  RAKYNPAPDLADAMKGYRKKNFPFLPADQIPAFNKALATFSGSIVSLIATKVLRYTALRT  235
            RA YNPAPDLA A+   +K +FPFL A+++P F + LA ++GSI++  AT+++  T++RT
Sbjct  183  RADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGVRT  242

Query  236  KELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEFVFAG  295
            +ELR   W ++DFE ++  I A VMK ++ H+VP+S+QV+ L+  L +I+K  + +VF G
Sbjct  243  QELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHP-LVFIG  301

Query  296  RNDKKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNEHEWPADAIEVQLAHANGGS  355
            RND +KPI  +++   I  +GY G  +GHGFRH  STI++E+   +  IE+QLAH +  S
Sbjct  302  RNDPRKPISKESINQAIELLGYKGRLTGHGFRHTMSTILHEQGFNSAWIEMQLAHVDKNS  361

Query  356  VRGIYNHAQYLDKRREMMQWWADWLDE  382
            +R+ YNHA YLD RREMMQW AD +D 
Sbjct  362  IRDTYNHALYLDGRREMMQWYADYIDS  388

222) ECOK1_2630 in NC_017628


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  306 bits (1146),  Expect = 1e-84, Method: Compositional matrix adjust.
 Identities = 184/387 (48%), Positives = 267/387 (69%), Gaps = 7/387 (1%)

Query  2    LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTLQ  61
            LT  ++ +AKPK+KPY+L DG G+YL +  +G K W+++Y++ GKEK+L++G YP +TL 
Sbjct  3    LTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVTLA  62

Query  62   EARDKAWTARKDISVGIDPVkakkassnnnsfs------aIYKEWYEHKKQVWSVGYATE  115
            +AR+K   ARK ++ G DP  AKK     +  S      AI +EW + K + WS+ Y  E
Sbjct  63   DAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYRDE  122

Query  116  LAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTG  175
            +   F+ DI+P IG   I +I PM+LLE +R+ E RGA+E+  K R+RCGEVFRYAIVTG
Sbjct  123  IIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIVTG  182

Query  176  RAKYNPAPDLADAMKGYRKKNFPFLPADQIPAFNKALATFSGSIVSLIATKVLRYTALRT  235
            RA YNPAPDLA A+   +K +FPFL A+++P F + LA ++GSI++  AT+++  T++RT
Sbjct  183  RADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGVRT  242

Query  236  KELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEFVFAG  295
            +ELR   W ++DFE ++  I A VMK ++ H+VP+S+QV+ L+  L +I+K  + +VF G
Sbjct  243  QELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHP-LVFIG  301

Query  296  RNDKKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNEHEWPADAIEVQLAHANGGS  355
            RND +KPI  +++   I  +GY G  +GHGFRH  STI++E+   +  IE+QLAH +  S
Sbjct  302  RNDPRKPISKESINQAIELLGYKGRLTGHGFRHTMSTILHEQGFNSAWIEMQLAHVDKNS  361

Query  356  VRGIYNHAQYLDKRREMMQWWADWLDE  382
            +R+ YNHA YLD RREMMQW AD +D 
Sbjct  362  IRDTYNHALYLDGRREMMQWYADYIDS  388

223) intS in NC_010473


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  306 bits (1146),  Expect = 1e-84, Method: Compositional matrix adjust.
 Identities = 184/387 (48%), Positives = 267/387 (69%), Gaps = 7/387 (1%)

Query  2    LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTLQ  61
            LT  ++ +AKPK+KPY+L DG G+YL +  +G K W+++Y++ GKEK+L++G YP +TL 
Sbjct  3    LTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVTLA  62

Query  62   EARDKAWTARKDISVGIDPVkakkassnnnsfs------aIYKEWYEHKKQVWSVGYATE  115
            +AR+K   ARK ++ G DP  AKK     +  S      AI +EW + K + WS+ Y  E
Sbjct  63   DAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYRDE  122

Query  116  LAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTG  175
            +   F+ DI+P IG   I +I PM+LLE +R+ E RGA+E+  K R+RCGEVFRYAIVTG
Sbjct  123  IIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIVTG  182

Query  176  RAKYNPAPDLADAMKGYRKKNFPFLPADQIPAFNKALATFSGSIVSLIATKVLRYTALRT  235
            RA YNPAPDLA A+   +K +FPFL A+++P F + LA ++GSI++  AT+++  T++RT
Sbjct  183  RADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGVRT  242

Query  236  KELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEFVFAG  295
            +ELR   W ++DFE ++  I A VMK ++ H+VP+S+QV+ L+  L +I+K  + +VF G
Sbjct  243  QELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHP-LVFIG  301

Query  296  RNDKKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNEHEWPADAIEVQLAHANGGS  355
            RND +KPI  +++   I  +GY G  +GHGFRH  STI++E+   +  IE+QLAH +  S
Sbjct  302  RNDPRKPISKESINQAIELLGYKGRLTGHGFRHTMSTILHEQGFNSAWIEMQLAHVDKNS  361

Query  356  VRGIYNHAQYLDKRREMMQWWADWLDE  382
            +R+ YNHA YLD RREMMQW AD +D 
Sbjct  362  IRDTYNHALYLDGRREMMQWYADYIDS  388

224) intS in NC_000913


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  306 bits (1146),  Expect = 1e-84, Method: Compositional matrix adjust.
 Identities = 184/387 (48%), Positives = 267/387 (69%), Gaps = 7/387 (1%)

Query  2    LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTLQ  61
            LT  ++ +AKPK+KPY+L DG G+YL +  +G K W+++Y++ GKEK+L++G YP +TL 
Sbjct  3    LTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVTLA  62

Query  62   EARDKAWTARKDISVGIDPVkakkassnnnsfs------aIYKEWYEHKKQVWSVGYATE  115
            +AR+K   ARK ++ G DP  AKK     +  S      AI +EW + K + WS+ Y  E
Sbjct  63   DAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYRDE  122

Query  116  LAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTG  175
            +   F+ DI+P IG   I +I PM+LLE +R+ E RGA+E+  K R+RCGEVFRYAIVTG
Sbjct  123  IIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIVTG  182

Query  176  RAKYNPAPDLADAMKGYRKKNFPFLPADQIPAFNKALATFSGSIVSLIATKVLRYTALRT  235
            RA YNPAPDLA A+   +K +FPFL A+++P F + LA ++GSI++  AT+++  T++RT
Sbjct  183  RADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGVRT  242

Query  236  KELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEFVFAG  295
            +ELR   W ++DFE ++  I A VMK ++ H+VP+S+QV+ L+  L +I+K  + +VF G
Sbjct  243  QELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHP-LVFIG  301

Query  296  RNDKKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNEHEWPADAIEVQLAHANGGS  355
            RND +KPI  +++   I  +GY G  +GHGFRH  STI++E+   +  IE+QLAH +  S
Sbjct  302  RNDPRKPISKESINQAIELLGYKGRLTGHGFRHTMSTILHEQGFNSAWIEMQLAHVDKNS  361

Query  356  VRGIYNHAQYLDKRREMMQWWADWLDE  382
            +R+ YNHA YLD RREMMQW AD +D 
Sbjct  362  IRDTYNHALYLDGRREMMQWYADYIDS  388

225) intS in NC_007779


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  306 bits (1146),  Expect = 1e-84, Method: Compositional matrix adjust.
 Identities = 184/387 (48%), Positives = 267/387 (69%), Gaps = 7/387 (1%)

Query  2    LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTLQ  61
            LT  ++ +AKPK+KPY+L DG G+YL +  +G K W+++Y++ GKEK+L++G YP +TL 
Sbjct  3    LTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVTLA  62

Query  62   EARDKAWTARKDISVGIDPVkakkassnnnsfs------aIYKEWYEHKKQVWSVGYATE  115
            +AR+K   ARK ++ G DP  AKK     +  S      AI +EW + K + WS+ Y  E
Sbjct  63   DAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYRDE  122

Query  116  LAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTG  175
            +   F+ DI+P IG   I +I PM+LLE +R+ E RGA+E+  K R+RCGEVFRYAIVTG
Sbjct  123  IIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIVTG  182

Query  176  RAKYNPAPDLADAMKGYRKKNFPFLPADQIPAFNKALATFSGSIVSLIATKVLRYTALRT  235
            RA YNPAPDLA A+   +K +FPFL A+++P F + LA ++GSI++  AT+++  T++RT
Sbjct  183  RADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGVRT  242

Query  236  KELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEFVFAG  295
            +ELR   W ++DFE ++  I A VMK ++ H+VP+S+QV+ L+  L +I+K  + +VF G
Sbjct  243  QELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHP-LVFIG  301

Query  296  RNDKKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNEHEWPADAIEVQLAHANGGS  355
            RND +KPI  +++   I  +GY G  +GHGFRH  STI++E+   +  IE+QLAH +  S
Sbjct  302  RNDPRKPISKESINQAIELLGYKGRLTGHGFRHTMSTILHEQGFNSAWIEMQLAHVDKNS  361

Query  356  VRGIYNHAQYLDKRREMMQWWADWLDE  382
            +R+ YNHA YLD RREMMQW AD +D 
Sbjct  362  IRDTYNHALYLDGRREMMQWYADYIDS  388

226) E2348C_2486 in NC_011601


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  306 bits (1146),  Expect = 1e-84, Method: Compositional matrix adjust.
 Identities = 184/387 (48%), Positives = 267/387 (69%), Gaps = 7/387 (1%)

Query  14   LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTLQ  73
            LT  ++ +AKPK+KPY+L DG G+YL +  +G K W+++Y++ GKEK+L++G YP +TL 
Sbjct  3    LTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVTLA  62

Query  74   EARDKAWTARKDISVGIDPVkakkassnnnsfs------aIYKEWYEHKKQVWSVGYATE  127
            +AR+K   ARK ++ G DP  AKK     +  S      AI +EW + K + WS+ Y  E
Sbjct  63   DAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYRDE  122

Query  128  LAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTG  187
            +   F+ DI+P IG   I +I PM+LLE +R+ E RGA+E+  K R+RCGEVFRYAIVTG
Sbjct  123  IIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIVTG  182

Query  188  RAKYNPAPDLADAMKGYRKKNFPFLPADQMPAFNKALATFSGSIVSLIATKVLRYTALRT  247
            RA YNPAPDLA A+   +K +FPFL A+++P F + LA ++GSI++  AT+++  T++RT
Sbjct  183  RADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGVRT  242

Query  248  KELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEFVFAG  307
            +ELR   W ++DFE ++  I A VMK ++ H+VP+S+QV+ L+  L +I+K  + +VF G
Sbjct  243  QELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHP-LVFIG  301

Query  308  RNDKKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNEHEWPADAIEVQLAHANGGS  367
            RND +KPI  +++   I  +GY G  +GHGFRH  STI++E+   +  IE+QLAH +  S
Sbjct  302  RNDPRKPISKESINQAIELLGYKGRLTGHGFRHTMSTILHEQGFNSAWIEMQLAHVDKNS  361

Query  368  VRGIYNHAQYLDKRREMMQWWADWLDE  394
            +R+ YNHA YLD RREMMQW AD +D 
Sbjct  362  IRDTYNHALYLDGRREMMQWYADYIDS  388

227) ECs3231 in NC_002695


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  306 bits (1145),  Expect = 1e-84, Method: Compositional matrix adjust.
 Identities = 183/387 (48%), Positives = 268/387 (70%), Gaps = 7/387 (1%)

Query  2    LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTLQ  61
            LT  ++ +AKPK+KPY+L DG G+YL +  +G K W+++Y++ GKEK+L++G YP +TL 
Sbjct  3    LTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVTLA  62

Query  62   EARDKAWTARKDISVGIDPVkakkassnnnsfs------aIYKEWYEHKRQVWSAAYATE  115
            +AR+K   ARK ++ G DP  AKK     +  S      AI +EW + K + WS  Y  E
Sbjct  63   DAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYRDE  122

Query  116  LAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTG  175
            +   F+ DI+P IG   I +I PM+LLE +R+ E RGA+E+  K R+RCGEVFRYAIVTG
Sbjct  123  IIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIVTG  182

Query  176  RAKYNPAPDLAEAMKGYRKKNFPFLPADQIPAFNKALATFSGSIVSLIATKVLRYTALRT  235
            RA YNPAPDLA A+   +K +FPFL A+++P F + LA ++GSI++  AT+++  T++RT
Sbjct  183  RADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGVRT  242

Query  236  KELRSMQWKNVDFENRIITIEASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEFVFAG  295
            +ELR  +W ++DFE ++  I A VMK ++ H+VP+S+QV+ L+  L +I+K  + +VF G
Sbjct  243  QELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHP-LVFIG  301

Query  296  RNDKKKSICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNEHEWPADAIEVQLAHANGGS  355
            RND +K+I  +++   I  +GY G  +GHGFRH  STI++E+   +  IE+QLAH +  S
Sbjct  302  RNDPRKPISKESINQAIELLGYKGRLTGHGFRHTMSTILHEQGFNSAWIEMQLAHVDKNS  361

Query  356  VRGIYNHAQYLDKRREMMQWWADWLDG  382
            +R+ YNHA YLD RREMMQW AD +D+
Sbjct  362  IRDTYNHALYLDGRREMMQWYADYIDS  388

228) intS in NC_013008


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  306 bits (1145),  Expect = 1e-84, Method: Compositional matrix adjust.
 Identities = 183/387 (48%), Positives = 268/387 (70%), Gaps = 7/387 (1%)

Query  2    LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTLQ  61
            LT  ++ +AKPK+KPY+L DG G+YL +  +G K W+++Y++ GKEK+L++G YP +TL 
Sbjct  3    LTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVTLA  62

Query  62   EARDKAWTARKDISVGIDPVkakkassnnnsfs------aIYKEWYEHKRQVWSAAYATE  115
            +AR+K   ARK ++ G DP  AKK     +  S      AI +EW + K + WS  Y  E
Sbjct  63   DAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYRDE  122

Query  116  LAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTG  175
            +   F+ DI+P IG   I +I PM+LLE +R+ E RGA+E+  K R+RCGEVFRYAIVTG
Sbjct  123  IIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIVTG  182

Query  176  RAKYNPAPDLAEAMKGYRKKNFPFLPADQIPAFNKALATFSGSIVSLIATKVLRYTALRT  235
            RA YNPAPDLA A+   +K +FPFL A+++P F + LA ++GSI++  AT+++  T++RT
Sbjct  183  RADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGVRT  242

Query  236  KELRSMQWKNVDFENRIITIEASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEFVFAG  295
            +ELR  +W ++DFE ++  I A VMK ++ H+VP+S+QV+ L+  L +I+K  + +VF G
Sbjct  243  QELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHP-LVFIG  301

Query  296  RNDKKKSICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNEHEWPADAIEVQLAHANGGS  355
            RND +K+I  +++   I  +GY G  +GHGFRH  STI++E+   +  IE+QLAH +  S
Sbjct  302  RNDPRKPISKESINQAIELLGYKGRLTGHGFRHTMSTILHEQGFNSAWIEMQLAHVDKNS  361

Query  356  VRGIYNHAQYLDKRREMMQWWADWLDG  382
            +R+ YNHA YLD RREMMQW AD +D+
Sbjct  362  IRDTYNHALYLDGRREMMQWYADYIDS  388

229) intS_2 in NC_022370


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  306 bits (1146),  Expect = 1e-84, Method: Compositional matrix adjust.
 Identities = 184/387 (48%), Positives = 267/387 (69%), Gaps = 7/387 (1%)

Query  2    LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTLQ  61
            LT  ++ +AKPK+KPY+L DG G+YL +  +G K W+++Y++ GKEK+L++G YP +TL 
Sbjct  3    LTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVTLA  62

Query  62   EARDKAWTARKDISVGIDPVkakkassnnnsfs------aIYKEWYEHKKQVWSVGYATE  115
            +AR+K   ARK ++ G DP  AKK     +  S      AI +EW + K + WS+ Y  E
Sbjct  63   DAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYRDE  122

Query  116  LAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTG  175
            +   F+ DI+P IG   I +I PM+LLE +R+ E RGA+E+  K R+RCGEVFRYAIVTG
Sbjct  123  IIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIVTG  182

Query  176  RAKYNPAPDLADAMKGYRKKNFPFLPADQIPAFNKALATFSGSIVSLIATKVLRYTALRT  235
            RA YNPAPDLA A+   +K +FPFL A+++P F + LA ++GSI++  AT+++  T++RT
Sbjct  183  RADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGVRT  242

Query  236  KELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEFVFAG  295
            +ELR   W ++DFE ++  I A VMK ++ H+VP+S+QV+ L+  L +I+K  + +VF G
Sbjct  243  QELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHP-LVFIG  301

Query  296  RNDKKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNEHEWPADAIEVQLAHANGGS  355
            RND +KPI  +++   I  +GY G  +GHGFRH  STI++E+   +  IE+QLAH +  S
Sbjct  302  RNDPRKPISKESINQAIELLGYKGRLTGHGFRHTMSTILHEQGFNSAWIEMQLAHVDKNS  361

Query  356  VRGIYNHAQYLDKRREMMQWWADWLDE  382
            +R+ YNHA YLD RREMMQW AD +D 
Sbjct  362  IRDTYNHALYLDGRREMMQWYADYIDS  388

230) intS in NC_011742


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  306 bits (1146),  Expect = 1e-84, Method: Compositional matrix adjust.
 Identities = 184/387 (48%), Positives = 267/387 (69%), Gaps = 7/387 (1%)

Query  2    LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTLQ  61
            LT  ++ +AKPK+KPY+L DG G+YL +  +G K W+++Y++ GKEK+L++G YP +TL 
Sbjct  3    LTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVTLA  62

Query  62   EARDKAWTARKDISVGIDPVkakkassnnnsfs------aIYKEWYEHKKQVWSVGYATE  115
            +AR+K   ARK ++ G DP  AKK     +  S      AI +EW + K + WS+ Y  E
Sbjct  63   DAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYRDE  122

Query  116  LAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTG  175
            +   F+ DI+P IG   I +I PM+LLE +R+ E RGA+E+  K R+RCGEVFRYAIVTG
Sbjct  123  IIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIVTG  182

Query  176  RAKYNPAPDLADAMKGYRKKNFPFLPADQIPAFNKALATFSGSIVSLIATKVLRYTALRT  235
            RA YNPAPDLA A+   +K +FPFL A+++P F + LA ++GSI++  AT+++  T++RT
Sbjct  183  RADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGVRT  242

Query  236  KELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEFVFAG  295
            +ELR   W ++DFE ++  I A VMK ++ H+VP+S+QV+ L+  L +I+K  + +VF G
Sbjct  243  QELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHP-LVFIG  301

Query  296  RNDKKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNEHEWPADAIEVQLAHANGGS  355
            RND +KPI  +++   I  +GY G  +GHGFRH  STI++E+   +  IE+QLAH +  S
Sbjct  302  RNDPRKPISKESINQAIELLGYKGRLTGHGFRHTMSTILHEQGFNSAWIEMQLAHVDKNS  361

Query  356  VRGIYNHAQYLDKRREMMQWWADWLDE  382
            +R+ YNHA YLD RREMMQW AD +D 
Sbjct  362  IRDTYNHALYLDGRREMMQWYADYIDS  388

231) UM146_05080 in NC_017632


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  306 bits (1146),  Expect = 1e-84, Method: Compositional matrix adjust.
 Identities = 184/387 (48%), Positives = 267/387 (69%), Gaps = 7/387 (1%)

Query  2    LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTLQ  61
            LT  ++ +AKPK+KPY+L DG G+YL +  +G K W+++Y++ GKEK+L++G YP +TL 
Sbjct  3    LTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVTLA  62

Query  62   EARDKAWTARKDISVGIDPVkakkassnnnsfs------aIYKEWYEHKKQVWSVGYATE  115
            +AR+K   ARK ++ G DP  AKK     +  S      AI +EW + K + WS+ Y  E
Sbjct  63   DAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYRDE  122

Query  116  LAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTG  175
            +   F+ DI+P IG   I +I PM+LLE +R+ E RGA+E+  K R+RCGEVFRYAIVTG
Sbjct  123  IIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIVTG  182

Query  176  RAKYNPAPDLADAMKGYRKKNFPFLPADQIPAFNKALATFSGSIVSLIATKVLRYTALRT  235
            RA YNPAPDLA A+   +K +FPFL A+++P F + LA ++GSI++  AT+++  T++RT
Sbjct  183  RADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGVRT  242

Query  236  KELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEFVFAG  295
            +ELR   W ++DFE ++  I A VMK ++ H+VP+S+QV+ L+  L +I+K  + +VF G
Sbjct  243  QELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHP-LVFIG  301

Query  296  RNDKKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNEHEWPADAIEVQLAHANGGS  355
            RND +KPI  +++   I  +GY G  +GHGFRH  STI++E+   +  IE+QLAH +  S
Sbjct  302  RNDPRKPISKESINQAIELLGYKGRLTGHGFRHTMSTILHEQGFNSAWIEMQLAHVDKNS  361

Query  356  VRGIYNHAQYLDKRREMMQWWADWLDE  382
            +R+ YNHA YLD RREMMQW AD +D 
Sbjct  362  IRDTYNHALYLDGRREMMQWYADYIDS  388

232) Bcep1808_0425 in NC_009256


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  306 bits (1147),  Expect = 1e-84, Method: Compositional matrix adjust.
 Identities = 178/391 (46%), Positives = 270/391 (70%), Gaps = 1/391 (0%)

Query  5    PLTDAKCRNARFDEAGGNKLFDGGGLYLDLRSSGSKKWRLKYRFNGKENLLTFGDYPATS  64
            +LTD K + A+       KL DGGG+YL + ++GSK WR+KYRF GKE++L++G YP  +
Sbjct  2    ALTDIKVKTAK-PKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  65   LADARSRRDEAKRLLAEGKNPAFERDVEKQTRAIAAQNTFEAVALEWYEAQQATWSASHA  124
            LADAR +R EA++LLA G +P+  +  EK ++ ++ +NTFEA+A EW + +   WS    
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  125  NRVKKQLDREVFPLIGQRPISSIGAPDLLAVVRRIEGREAFETARKTLQTCGQVFRYAVA  184
            + +   +++++FP IG+RPI+ I +  LL  +R++E R A+E  RK  Q CG+VFRYA+ 
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  185  TSRAERDPSPDLRGALKAVPVKHMARVGESELPELLRSIASYEGEPETRLALRFLALTFV  244
            T+RA+ +P+PDL +AL +    H + +  +ELP++L  +A+Y G   T+ A +++ LT V
Sbjct  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV  240

Query  245  RTIELRQAEWTEIDLERREWRIPAEKMKMRRVHIVPLAEQAIALLSELRALTGHRRWLFP  304
            RT ELR A W +ID+E + W IPAE MKM+R HIVPL+EQ I L+ +L +++ H+  +F 
Sbjct  241  RTQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHPLVFI  300

Query  305  NSRRPLQQMSENTILYALYRMGYRSRMTGHGFRGLASTILNEKGFNSDWIERQLAHSEQD  364
                P + +S ++I  A+  +GY++R+TGHGFR   STIL+E+GFNS WIE QLAH +++
Sbjct  301  GRNDPRKPISKESINQAIELLGYKGRLTGHGFRHTMSTILHEQGFNSAWIEMQLAHVDKN  360

Query  365  GVRAAYNHAEYLSERHRMMQWWADYLDKQSG  395
            ++R +YNHA YL  R+ MMQW ADY+D  S+
Sbjct  361  SIRDTYNHALYLDGRREMMQWYADYIDSLSS  391

233) intC in NC_007946


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  306 bits (1145),  Expect = 2e-84, Method: Compositional matrix adjust.
 Identities = 184/387 (48%), Positives = 267/387 (69%), Gaps = 7/387 (1%)

Query  14   LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTLQ  73
            LT  ++ +AKPK+KPY+L DG G+YL +  +G K W+++Y++ GKEK+L++G YP +TL 
Sbjct  3    LTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVTLA  62

Query  74   EARDKAWTARKDISVGIDPVkakkassnnnsfs------aIYKEWYEHKKQVWSVGYATE  127
            +AR+K   ARK ++ G DP  AKK     +  S      AI +EW + K + WS+ Y  E
Sbjct  63   DAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYRDE  122

Query  128  LAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTG  187
            +   F+ DI+P IG   I +I PM+LLE +R+ E RGA+E+  K R+RCGEVFRYAIVTG
Sbjct  123  IIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIVTG  182

Query  188  RAKYNPAPDLADAMKGYRKKNFPFLPADQIPAFNKALATFSGSIVSLIATKVLRYTALRT  247
            RA YNPAPDLA A+   +K +FPFL A+++P F + LA ++GSI++  AT+++  T++RT
Sbjct  183  RADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGVRT  242

Query  248  KELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEFVFAG  307
            +ELR   W ++DFE ++  I A VMK ++ H+VP+S+QV+ L+  L +I+K  + +VF G
Sbjct  243  QELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHP-LVFIG  301

Query  308  RNDKKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNEHEWPADAIEVQLAHANGGS  367
            RND +KPI  +++   I  +GY G  +GHGFRH  STI++E+   +  IE+QLAH +  S
Sbjct  302  RNDPRKPISKESINQAIELLGYKGRLTGHGFRHTMSTILHEQGFNSAWIEMQLAHVDKNS  361

Query  368  VRGIYNHAQYLDKRREMMQWWADWLDE  394
            +R+ YNHA YLD RREMMQW AD +D 
Sbjct  362  IRDTYNHALYLDGRREMMQWYADYIDS  388

234) ECH74115_3582 in NC_011353


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  305 bits (1144),  Expect = 2e-84, Method: Compositional matrix adjust.
 Identities = 183/387 (48%), Positives = 268/387 (70%), Gaps = 7/387 (1%)

Query  14   LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTLQ  73
            LT  ++ +AKPK+KPY+L DG G+YL +  +G K W+++Y++ GKEK+L++G YP +TL 
Sbjct  3    LTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVTLA  62

Query  74   EARDKAWTARKDISVGIDPVkakkassnnnsfs------aIYKEWYEHKRQVWSAAYATE  127
            +AR+K   ARK ++ G DP  AKK     +  S      AI +EW + K + WS  Y  E
Sbjct  63   DAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYRDE  122

Query  128  LAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTG  187
            +   F+ DI+P IG   I +I PM+LLE +R+ E RGA+E+  K R+RCGEVFRYAIVTG
Sbjct  123  IIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIVTG  182

Query  188  RAKYNPAPDLAEAMKGYRKKNFPFLPADQIPAFNKALATFSGSIVSLIATKVLRYTALRT  247
            RA YNPAPDLA A+   +K +FPFL A+++P F + LA ++GSI++  AT+++  T++RT
Sbjct  183  RADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGVRT  242

Query  248  KELRSMQWKNVDFENRIITIEASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEFVFAG  307
            +ELR  +W ++DFE ++  I A VMK ++ H+VP+S+QV+ L+  L +I+K  + +VF G
Sbjct  243  QELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHP-LVFIG  301

Query  308  RNDKKKSICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNEHEWPADAIEVQLAHANGGS  367
            RND +K+I  +++   I  +GY G  +GHGFRH  STI++E+   +  IE+QLAH +  S
Sbjct  302  RNDPRKPISKESINQAIELLGYKGRLTGHGFRHTMSTILHEQGFNSAWIEMQLAHVDKNS  361

Query  368  VRGIYNHAQYLDKRREMMQWWADWLDG  394
            +R+ YNHA YLD RREMMQW AD +D+
Sbjct  362  IRDTYNHALYLDGRREMMQWYADYIDS  388

235) intC in NC_002655


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  305 bits (1144),  Expect = 2e-84, Method: Compositional matrix adjust.
 Identities = 183/387 (48%), Positives = 268/387 (70%), Gaps = 7/387 (1%)

Query  14   LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTLQ  73
            LT  ++ +AKPK+KPY+L DG G+YL +  +G K W+++Y++ GKEK+L++G YP +TL 
Sbjct  3    LTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVTLA  62

Query  74   EARDKAWTARKDISVGIDPVkakkassnnnsfs------aIYKEWYEHKRQVWSAAYATE  127
            +AR+K   ARK ++ G DP  AKK     +  S      AI +EW + K + WS  Y  E
Sbjct  63   DAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYRDE  122

Query  128  LAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTG  187
            +   F+ DI+P IG   I +I PM+LLE +R+ E RGA+E+  K R+RCGEVFRYAIVTG
Sbjct  123  IIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIVTG  182

Query  188  RAKYNPAPDLAEAMKGYRKKNFPFLPADQIPAFNKALATFSGSIVSLIATKVLRYTALRT  247
            RA YNPAPDLA A+   +K +FPFL A+++P F + LA ++GSI++  AT+++  T++RT
Sbjct  183  RADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGVRT  242

Query  248  KELRSMQWKNVDFENRIITIEASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEFVFAG  307
            +ELR  +W ++DFE ++  I A VMK ++ H+VP+S+QV+ L+  L +I+K  + +VF G
Sbjct  243  QELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHP-LVFIG  301

Query  308  RNDKKKSICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNEHEWPADAIEVQLAHANGGS  367
            RND +K+I  +++   I  +GY G  +GHGFRH  STI++E+   +  IE+QLAH +  S
Sbjct  302  RNDPRKPISKESINQAIELLGYKGRLTGHGFRHTMSTILHEQGFNSAWIEMQLAHVDKNS  361

Query  368  VRGIYNHAQYLDKRREMMQWWADWLDG  394
            +R+ YNHA YLD RREMMQW AD +D+
Sbjct  362  IRDTYNHALYLDGRREMMQWYADYIDS  388

236) CDCO157_2996 in NC_017906


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  305 bits (1144),  Expect = 2e-84, Method: Compositional matrix adjust.
 Identities = 183/387 (48%), Positives = 268/387 (70%), Gaps = 7/387 (1%)

Query  14   LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTLQ  73
            LT  ++ +AKPK+KPY+L DG G+YL +  +G K W+++Y++ GKEK+L++G YP +TL 
Sbjct  3    LTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVTLA  62

Query  74   EARDKAWTARKDISVGIDPVkakkassnnnsfs------aIYKEWYEHKRQVWSAAYATE  127
            +AR+K   ARK ++ G DP  AKK     +  S      AI +EW + K + WS  Y  E
Sbjct  63   DAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYRDE  122

Query  128  LAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTG  187
            +   F+ DI+P IG   I +I PM+LLE +R+ E RGA+E+  K R+RCGEVFRYAIVTG
Sbjct  123  IIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIVTG  182

Query  188  RAKYNPAPDLAEAMKGYRKKNFPFLPADQIPAFNKALATFSGSIVSLIATKVLRYTALRT  247
            RA YNPAPDLA A+   +K +FPFL A+++P F + LA ++GSI++  AT+++  T++RT
Sbjct  183  RADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGVRT  242

Query  248  KELRSMQWKNVDFENRIITIEASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEFVFAG  307
            +ELR  +W ++DFE ++  I A VMK ++ H+VP+S+QV+ L+  L +I+K  + +VF G
Sbjct  243  QELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHP-LVFIG  301

Query  308  RNDKKKSICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNEHEWPADAIEVQLAHANGGS  367
            RND +K+I  +++   I  +GY G  +GHGFRH  STI++E+   +  IE+QLAH +  S
Sbjct  302  RNDPRKPISKESINQAIELLGYKGRLTGHGFRHTMSTILHEQGFNSAWIEMQLAHVDKNS  361

Query  368  VRGIYNHAQYLDKRREMMQWWADWLDG  394
            +R+ YNHA YLD RREMMQW AD +D+
Sbjct  362  IRDTYNHALYLDGRREMMQWYADYIDS  388

237) AvCA6_40500 in NC_021150


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  304 bits (1140),  Expect = 4e-84, Method: Compositional matrix adjust.
 Identities = 177/393 (46%), Positives = 267/393 (68%), Gaps = 4/393 (1%)

Query  1    MPLSDSAIRTAKPREKLYRLADANGLCLEVTPTGSKLWRYRYRFNGNAKMLALGVYPAVT  60
            M+L+D  ++TAKP++K Y+LAD+ G+ L +   GSK WR +YRF G+ KML++GVYP VT
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   LQKARQLRDAARQLLAEGKDPSAERKAEQEAQQSD-GLTFETLAREWHAYRAPRWAKSTA  119
            L  AR+ R  AR+LLA G DP+  +K E+ AQQ     TFE++AREWH  +A RW+    
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  120  DKTAAYLESDLLPVLGKRPVKAITRPELVELLHGIEDRGAHNVAKKCRQWLSQIFRFGLA  179
            D     +E D++P +GKRP+  I    L+E L+ +E RGA +  +K RQ+ +++FR+++ 
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  180  KGSVDANPATDLDvvaahapatrhhphvtFAELPELLGKIEGASINVLTRHAIRLLVLTG  239
             G  D NPA DL    A +   +     +  ELP++L  + G + +++T+ A ++++LTG
Sbjct  181  TGRADYNPAPDLASALATPKKVHFPFLTA-NELPHFLNDLAGYTGSIITKTATQIIMLTG  239

Query  240  VRPGELRAAPWSEFDLKAAVWTIPKERMKARRPHIVPLPRQAMAILRELQEITGAYELVF  299
            VR  ELR A W ++D+ + +W IP E MK +RPHIVPL+ Q + ++++L+ I+    LVF
Sbjct  240  VRTQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHPLVF  299

Query  300  AGRNNSARPMSENTVNKALADAGYRGRQTGHGFRHLLSTELNSRGYNRDWIERQLAHGDQ  359
             GRN++ +P+S +++N+A+   GY+GR TGHGFRH +ST L+ +G+N  WIE QLAH D+
Sbjct  300  IGRNDPRKPISKESINQAIELLGYKGRLTGHGFRHTMSTILHEQGFNSAWIEMQLAHVDK  359

Query  360  DEMRDTYNHATYLEQRRDMMQAW-ADSIDALCA  391
            + +RDTYNHA YL+ RR+MMQ W AD ID+L +
Sbjct  360  NSIRDTYNHALYLDGRREMMQ-WYADYIDSLSS  391

238) AvCA_40500 in NC_021149


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  304 bits (1140),  Expect = 4e-84, Method: Compositional matrix adjust.
 Identities = 177/393 (46%), Positives = 267/393 (68%), Gaps = 4/393 (1%)

Query  1    MPLSDSAIRTAKPREKLYRLADANGLCLEVTPTGSKLWRYRYRFNGNAKMLALGVYPAVT  60
            M+L+D  ++TAKP++K Y+LAD+ G+ L +   GSK WR +YRF G+ KML++GVYP VT
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   LQKARQLRDAARQLLAEGKDPSAERKAEQEAQQSD-GLTFETLAREWHAYRAPRWAKSTA  119
            L  AR+ R  AR+LLA G DP+  +K E+ AQQ     TFE++AREWH  +A RW+    
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  120  DKTAAYLESDLLPVLGKRPVKAITRPELVELLHGIEDRGAHNVAKKCRQWLSQIFRFGLA  179
            D     +E D++P +GKRP+  I    L+E L+ +E RGA +  +K RQ+ +++FR+++ 
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  180  KGSVDANPATDLDvvaahapatrhhphvtFAELPELLGKIEGASINVLTRHAIRLLVLTG  239
             G  D NPA DL    A +   +     +  ELP++L  + G + +++T+ A ++++LTG
Sbjct  181  TGRADYNPAPDLASALATPKKVHFPFLTA-NELPHFLNDLAGYTGSIITKTATQIIMLTG  239

Query  240  VRPGELRAAPWSEFDLKAAVWTIPKERMKARRPHIVPLPRQAMAILRELQEITGAYELVF  299
            VR  ELR A W ++D+ + +W IP E MK +RPHIVPL+ Q + ++++L+ I+    LVF
Sbjct  240  VRTQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHPLVF  299

Query  300  AGRNNSARPMSENTVNKALADAGYRGRQTGHGFRHLLSTELNSRGYNRDWIERQLAHGDQ  359
             GRN++ +P+S +++N+A+   GY+GR TGHGFRH +ST L+ +G+N  WIE QLAH D+
Sbjct  300  IGRNDPRKPISKESINQAIELLGYKGRLTGHGFRHTMSTILHEQGFNSAWIEMQLAHVDK  359

Query  360  DEMRDTYNHATYLEQRRDMMQAW-ADSIDALCA  391
            + +RDTYNHA YL+ RR+MMQ W AD ID+L +
Sbjct  360  NSIRDTYNHALYLDGRREMMQ-WYADYIDSLSS  391

239) Avin_40500 in NC_012560


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  304 bits (1140),  Expect = 4e-84, Method: Compositional matrix adjust.
 Identities = 177/393 (46%), Positives = 267/393 (68%), Gaps = 4/393 (1%)

Query  1    MPLSDSAIRTAKPREKLYRLADANGLCLEVTPTGSKLWRYRYRFNGNAKMLALGVYPAVT  60
            M+L+D  ++TAKP++K Y+LAD+ G+ L +   GSK WR +YRF G+ KML++GVYP VT
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   LQKARQLRDAARQLLAEGKDPSAERKAEQEAQQSD-GLTFETLAREWHAYRAPRWAKSTA  119
            L  AR+ R  AR+LLA G DP+  +K E+ AQQ     TFE++AREWH  +A RW+    
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  120  DKTAAYLESDLLPVLGKRPVKAITRPELVELLHGIEDRGAHNVAKKCRQWLSQIFRFGLA  179
            D     +E D++P +GKRP+  I    L+E L+ +E RGA +  +K RQ+ +++FR+++ 
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  180  KGSVDANPATDLDvvaahapatrhhphvtFAELPELLGKIEGASINVLTRHAIRLLVLTG  239
             G  D NPA DL    A +   +     +  ELP++L  + G + +++T+ A ++++LTG
Sbjct  181  TGRADYNPAPDLASALATPKKVHFPFLTA-NELPHFLNDLAGYTGSIITKTATQIIMLTG  239

Query  240  VRPGELRAAPWSEFDLKAAVWTIPKERMKARRPHIVPLPRQAMAILRELQEITGAYELVF  299
            VR  ELR A W ++D+ + +W IP E MK +RPHIVPL+ Q + ++++L+ I+    LVF
Sbjct  240  VRTQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHPLVF  299

Query  300  AGRNNSARPMSENTVNKALADAGYRGRQTGHGFRHLLSTELNSRGYNRDWIERQLAHGDQ  359
             GRN++ +P+S +++N+A+   GY+GR TGHGFRH +ST L+ +G+N  WIE QLAH D+
Sbjct  300  IGRNDPRKPISKESINQAIELLGYKGRLTGHGFRHTMSTILHEQGFNSAWIEMQLAHVDK  359

Query  360  DEMRDTYNHATYLEQRRDMMQAW-ADSIDALCA  391
            + +RDTYNHA YL+ RR+MMQ W AD ID+L +
Sbjct  360  NSIRDTYNHALYLDGRREMMQ-WYADYIDSLSS  391

240) MYA_0364 in NC_017920


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  304 bits (1141),  Expect = 4e-84, Method: Compositional matrix adjust.
 Identities = 177/391 (46%), Positives = 270/391 (70%), Gaps = 1/391 (0%)

Query  5    PLTDAKCRNARFDEAGGNKLFDGGGLYLDLRSSGSKKWRLKYRFNGKENLLTFGDYPATS  64
            +LTD K + A+       KL DGGG+YL + ++GSK WR+KYRF GKE++L++G YP  +
Sbjct  2    ALTDIKVKTAK-PKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  65   LADARSRRDEAKRLLAEGKNPAFERDVEKQTRAIAAQNTFEAVALEWYEAQQATWSGSHA  124
            LADAR +R EA++LLA G +P+  +  EK ++ ++ +NTFEA+A EW + +   WS    
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  125  NRVKKQLDREVFPLIGQRPISSIGAPDLLAVIRRIEGREAFETARKTLQTCGQVFRYAVA  184
            + +   +++++FP IG+RPI+ I +  LL  +R++E R A+E  RK  Q CG+VFRYA+ 
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  185  TSRAERDPSPDLRGALKAVPVKHMARVGESELPELLRSIAAYEGEPETRLALRFLALTFV  244
            T+RA+ +P+PDL +AL +    H + +  +ELP++L  +A+Y G   T+ A +++ LT V
Sbjct  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV  240

Query  245  RTIELRQAEWTEIDLERREWRIPAEKMKMRRVHIVPLAEQTIALLAELRALTGHRRWLFP  304
            RT ELR A W +ID+E + W IPAE MKM+R HIVPL+EQ I L+ +L +++ H+  +F 
Sbjct  241  RTQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHPLVFI  300

Query  305  NSRRPLQQMSENTILYALYRMGYRSRMTGHGFRGLASTILNEKGFNSDWIERQLAHSEQD  364
                P + +S ++I  A+  +GY++R+TGHGFR   STIL+E+GFNS WIE QLAH +++
Sbjct  301  GRNDPRKPISKESINQAIELLGYKGRLTGHGFRHTMSTILHEQGFNSAWIEMQLAHVDKN  360

Query  365  GVRAAYNHAEYLSERHRMMQWWADYLDKQGG  395
            ++R +YNHA YL  R+ MMQW ADY+D  ++
Sbjct  361  SIRDTYNHALYLDGRREMMQWYADYIDSLSS  391

241) SSON53_14055 in NC_016822


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  304 bits (1139),  Expect = 5e-84, Method: Compositional matrix adjust.
 Identities = 183/387 (48%), Positives = 266/387 (69%), Gaps = 7/387 (1%)

Query  2    LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTLQ  61
            LT  ++ +AKPK+KPY+L DG G+YL +  +G K W+++Y++ GKEK+L++G YP +TL 
Sbjct  3    LTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVTLA  62

Query  62   EARDKAWTARKDISVGIVPVkakkassnnnsfs------aIYKEWYEHKKQVWSVGYATE  115
            +AR+K   ARK ++ G  P  AKK     +  S      AI +EW + K + WS+ Y  E
Sbjct  63   DAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYRDE  122

Query  116  LAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTG  175
            +   F+ DI+P IG   I +I PM+LLE +R+ E RGA+E+  K R+RCGEVFRYAIVTG
Sbjct  123  IIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIVTG  182

Query  176  RAKYNPAPDLADAMKGYRKKNFPFLPADQMPAFNKALATFSGSIVSLIATKVLRYTALRT  235
            RA YNPAPDLA A+   +K +FPFL A+++P F + LA ++GSI++  AT+++  T++RT
Sbjct  183  RADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGVRT  242

Query  236  KELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEFVFAG  295
            +ELR   W ++DFE ++  I A VMK ++ H+VP+S+QV+ L+  L +I+K  + +VF G
Sbjct  243  QELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHP-LVFIG  301

Query  296  RNDKKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNEHEWPADAIEVQLAHANGGS  355
            RND +KPI  +++   I  +GY G  +GHGFRH  STI++E+   +  IE+QLAH +  S
Sbjct  302  RNDPRKPISKESINQAIELLGYKGRLTGHGFRHTMSTILHEQGFNSAWIEMQLAHVDKNS  361

Query  356  VRGIYNHAQYLDKRREMMQWWADWLDE  382
            +R+ YNHA YLD RREMMQW AD +D 
Sbjct  362  IRDTYNHALYLDGRREMMQWYADYIDS  388

242) intC in NC_007384


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  304 bits (1139),  Expect = 5e-84, Method: Compositional matrix adjust.
 Identities = 183/387 (48%), Positives = 266/387 (69%), Gaps = 7/387 (1%)

Query  2    LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTLQ  61
            LT  ++ +AKPK+KPY+L DG G+YL +  +G K W+++Y++ GKEK+L++G YP +TL 
Sbjct  3    LTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVTLA  62

Query  62   EARDKAWTARKDISVGIVPVkakkassnnnsfs------aIYKEWYEHKKQVWSVGYATE  115
            +AR+K   ARK ++ G  P  AKK     +  S      AI +EW + K + WS+ Y  E
Sbjct  63   DAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYRDE  122

Query  116  LAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTG  175
            +   F+ DI+P IG   I +I PM+LLE +R+ E RGA+E+  K R+RCGEVFRYAIVTG
Sbjct  123  IIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIVTG  182

Query  176  RAKYNPAPDLADAMKGYRKKNFPFLPADQMPAFNKALATFSGSIVSLIATKVLRYTALRT  235
            RA YNPAPDLA A+   +K +FPFL A+++P F + LA ++GSI++  AT+++  T++RT
Sbjct  183  RADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGVRT  242

Query  236  KELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEFVFAG  295
            +ELR   W ++DFE ++  I A VMK ++ H+VP+S+QV+ L+  L +I+K  + +VF G
Sbjct  243  QELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHP-LVFIG  301

Query  296  RNDKKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNEHEWPADAIEVQLAHANGGS  355
            RND +KPI  +++   I  +GY G  +GHGFRH  STI++E+   +  IE+QLAH +  S
Sbjct  302  RNDPRKPISKESINQAIELLGYKGRLTGHGFRHTMSTILHEQGFNSAWIEMQLAHVDKNS  361

Query  356  VRGIYNHAQYLDKRREMMQWWADWLDE  382
            +R+ YNHA YLD RREMMQW AD +D 
Sbjct  362  IRDTYNHALYLDGRREMMQWYADYIDS  388

243) KO11_22995 in NC_017660


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  304 bits (1140),  Expect = 5e-84, Method: Compositional matrix adjust.
 Identities = 180/412 (44%), Positives = 276/412 (67%), Gaps = 24/412 (5%)

Query  1    MALTDTKVRSAKPEEKEYSLVDGDGMSLLVKPGGSKYWRFRFRFGGKQHLMAFGVYPDVS  60
            MALTD KV++AKP +K Y L DG+GM LL++  GSKYWR ++RF+GK+ ++++GVYPDV+
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   LADARKKREEARKLVAAGIDPREHKRAVKEEQAKEI-ITFEKVAREW-LVTNQKWSEDHA  118
            LADAR KR EARKL+AAG DP E K+  K  Q   +  TFE +AREW  +  ++WS    
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  119  NRVKKSLEDNIFPAIGTRNIAELGTRDLLIPIKAVEKSGRLEVASRLQQRTTAIMRYAVQ  178
            + +  ++E +IFP IG R IAE+    LL +++ +EK G LE   +++QR   + RYA+ 
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  179  SGLIDYNPAQEMAGAVASSNRQHRPALELKRIPELLEKIDGYTGRPLTRWATELTLLIFI  238
            +G  DYNPA ++A+A+A++++ H P L  + +P++L+ + GYTG  +T+ AT++ +L  +
Sbjct  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV  240

Query  239  RSSELRFARWSEIDFETSMWTIPPEREPIPGVKYSQRGSKMRTPHLVPLSKQALAILKQI  298
            R+ ELRFARW +IDFET +W IP+E              KM+ PH+VPLS Q + ++KQ+
Sbjct  241  RTQELRFARWEDIDFETKLWEIPAE------------VMKMKRPHIVPLSEQVIMLFKQL  288

Query  299  KQFCGEHELIFIGDHDPRKPMSENTVNSALRVMGYDTKVEVCGHGFRTMACSSLIESGL-  357
              +  +H L+FIG +DPRKP+S +++N A+ ++GY  +  + GHGFR    + L E G+ 
Sbjct  289  EPISKHHPLVFIGRNDPRKPISKESINQAIELLGYKGR--LTGHGFRHTMSTILHEQGFN  346

Query  358  --WSKDAVERQMSHMERNSVRAAYIHKAEHLDERKLMLQWWADFLDANRERA  407
              W    +E Q++H+++NS+R +Y H A  LD R+ M+QW AD++D+   R 
Sbjct  347  SAW----IEMQLAHVDKNSIRDTYNH-ALYLDGRREMMQWYADYIDSLSSRE  393

244) EKO11_4043 in NC_016902


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  304 bits (1140),  Expect = 5e-84, Method: Compositional matrix adjust.
 Identities = 180/412 (44%), Positives = 276/412 (67%), Gaps = 24/412 (5%)

Query  1    MALTDTKVRSAKPEEKEYSLVDGDGMSLLVKPGGSKYWRFRFRFGGKQHLMAFGVYPDVS  60
            MALTD KV++AKP +K Y L DG+GM LL++  GSKYWR ++RF+GK+ ++++GVYPDV+
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   LADARKKREEARKLVAAGIDPREHKRAVKEEQAKEI-ITFEKVAREW-LVTNQKWSEDHA  118
            LADAR KR EARKL+AAG DP E K+  K  Q   +  TFE +AREW  +  ++WS    
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  119  NRVKKSLEDNIFPAIGTRNIAELGTRDLLIPIKAVEKSGRLEVASRLQQRTTAIMRYAVQ  178
            + +  ++E +IFP IG R IAE+    LL +++ +EK G LE   +++QR   + RYA+ 
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  179  SGLIDYNPAQEMAGAVASSNRQHRPALELKRIPELLEKIDGYTGRPLTRWATELTLLIFI  238
            +G  DYNPA ++A+A+A++++ H P L  + +P++L+ + GYTG  +T+ AT++ +L  +
Sbjct  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV  240

Query  239  RSSELRFARWSEIDFETSMWTIPPEREPIPGVKYSQRGSKMRTPHLVPLSKQALAILKQI  298
            R+ ELRFARW +IDFET +W IP+E              KM+ PH+VPLS Q + ++KQ+
Sbjct  241  RTQELRFARWEDIDFETKLWEIPAE------------VMKMKRPHIVPLSEQVIMLFKQL  288

Query  299  KQFCGEHELIFIGDHDPRKPMSENTVNSALRVMGYDTKVEVCGHGFRTMACSSLIESGL-  357
              +  +H L+FIG +DPRKP+S +++N A+ ++GY  +  + GHGFR    + L E G+ 
Sbjct  289  EPISKHHPLVFIGRNDPRKPISKESINQAIELLGYKGR--LTGHGFRHTMSTILHEQGFN  346

Query  358  --WSKDAVERQMSHMERNSVRAAYIHKAEHLDERKLMLQWWADFLDANRERA  407
              W    +E Q++H+++NS+R +Y H A  LD R+ M+QW AD++D+   R 
Sbjct  347  SAW----IEMQLAHVDKNSIRDTYNH-ALYLDGRREMMQWYADYIDSLSSRE  393

245) LY180_22420 in NC_022364


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  304 bits (1140),  Expect = 5e-84, Method: Compositional matrix adjust.
 Identities = 180/412 (44%), Positives = 276/412 (67%), Gaps = 24/412 (5%)

Query  1    MALTDTKVRSAKPEEKEYSLVDGDGMSLLVKPGGSKYWRFRFRFGGKQHLMAFGVYPDVS  60
            MALTD KV++AKP +K Y L DG+GM LL++  GSKYWR ++RF+GK+ ++++GVYPDV+
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   LADARKKREEARKLVAAGIDPREHKRAVKEEQAKEI-ITFEKVAREW-LVTNQKWSEDHA  118
            LADAR KR EARKL+AAG DP E K+  K  Q   +  TFE +AREW  +  ++WS    
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  119  NRVKKSLEDNIFPAIGTRNIAELGTRDLLIPIKAVEKSGRLEVASRLQQRTTAIMRYAVQ  178
            + +  ++E +IFP IG R IAE+    LL +++ +EK G LE   +++QR   + RYA+ 
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  179  SGLIDYNPAQEMAGAVASSNRQHRPALELKRIPELLEKIDGYTGRPLTRWATELTLLIFI  238
            +G  DYNPA ++A+A+A++++ H P L  + +P++L+ + GYTG  +T+ AT++ +L  +
Sbjct  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV  240

Query  239  RSSELRFARWSEIDFETSMWTIPPEREPIPGVKYSQRGSKMRTPHLVPLSKQALAILKQI  298
            R+ ELRFARW +IDFET +W IP+E              KM+ PH+VPLS Q + ++KQ+
Sbjct  241  RTQELRFARWEDIDFETKLWEIPAE------------VMKMKRPHIVPLSEQVIMLFKQL  288

Query  299  KQFCGEHELIFIGDHDPRKPMSENTVNSALRVMGYDTKVEVCGHGFRTMACSSLIESGL-  357
              +  +H L+FIG +DPRKP+S +++N A+ ++GY  +  + GHGFR    + L E G+ 
Sbjct  289  EPISKHHPLVFIGRNDPRKPISKESINQAIELLGYKGR--LTGHGFRHTMSTILHEQGFN  346

Query  358  --WSKDAVERQMSHMERNSVRAAYIHKAEHLDERKLMLQWWADFLDANRERA  407
              W    +E Q++H+++NS+R +Y H A  LD R+ M+QW AD++D+   R 
Sbjct  347  SAW----IEMQLAHVDKNSIRDTYNH-ALYLDGRREMMQWYADYIDSLSSRE  393

246) WFL_22550 in NC_017664


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  304 bits (1140),  Expect = 5e-84, Method: Compositional matrix adjust.
 Identities = 180/412 (44%), Positives = 276/412 (67%), Gaps = 24/412 (5%)

Query  1    MALTDTKVRSAKPEEKEYSLVDGDGMSLLVKPGGSKYWRFRFRFGGKQHLMAFGVYPDVS  60
            MALTD KV++AKP +K Y L DG+GM LL++  GSKYWR ++RF+GK+ ++++GVYPDV+
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   LADARKKREEARKLVAAGIDPREHKRAVKEEQAKEI-ITFEKVAREW-LVTNQKWSEDHA  118
            LADAR KR EARKL+AAG DP E K+  K  Q   +  TFE +AREW  +  ++WS    
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  119  NRVKKSLEDNIFPAIGTRNIAELGTRDLLIPIKAVEKSGRLEVASRLQQRTTAIMRYAVQ  178
            + +  ++E +IFP IG R IAE+    LL +++ +EK G LE   +++QR   + RYA+ 
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  179  SGLIDYNPAQEMAGAVASSNRQHRPALELKRIPELLEKIDGYTGRPLTRWATELTLLIFI  238
            +G  DYNPA ++A+A+A++++ H P L  + +P++L+ + GYTG  +T+ AT++ +L  +
Sbjct  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV  240

Query  239  RSSELRFARWSEIDFETSMWTIPPEREPIPGVKYSQRGSKMRTPHLVPLSKQALAILKQI  298
            R+ ELRFARW +IDFET +W IP+E              KM+ PH+VPLS Q + ++KQ+
Sbjct  241  RTQELRFARWEDIDFETKLWEIPAE------------VMKMKRPHIVPLSEQVIMLFKQL  288

Query  299  KQFCGEHELIFIGDHDPRKPMSENTVNSALRVMGYDTKVEVCGHGFRTMACSSLIESGL-  357
              +  +H L+FIG +DPRKP+S +++N A+ ++GY  +  + GHGFR    + L E G+ 
Sbjct  289  EPISKHHPLVFIGRNDPRKPISKESINQAIELLGYKGR--LTGHGFRHTMSTILHEQGFN  346

Query  358  --WSKDAVERQMSHMERNSVRAAYIHKAEHLDERKLMLQWWADFLDANRERA  407
              W    +E Q++H+++NS+R +Y H A  LD R+ M+QW AD++D+   R 
Sbjct  347  SAW----IEMQLAHVDKNSIRDTYNH-ALYLDGRREMMQWYADYIDSLSSRE  393

247) ECO26_4069 in NC_013361


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  304 bits (1140),  Expect = 5e-84, Method: Compositional matrix adjust.
 Identities = 169/407 (42%), Positives = 272/407 (67%), Gaps = 25/407 (6%)

Query  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60
            MALTD K+++AKP DK+YKL+DG+GM+LL++ NGS+YWR++YR+ GKEK L++GVYP+V+
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQL--SFEHIARRWHA-SNKQWAQSHS  117
            L++AR KR EARKL++ G DP E K+  K+  ++ L  +FE IAR WH     +W+    
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  118  DKVLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQ  177
            D ++ ++E ++FP+IG+R I+ ++   LL ++R  E +   E   +++QR + V RYA+ 
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  178  SGIIRYNPALDMAGALTTVKRQHRPALNLSRLPELLSRIDGYKGQPVTRLAVMLNLLVFI  237
            +G   YNPA D+A+AL+T K+ H P L  + LP++L+ + GY G  +T+ A  + +L  +
Sbjct  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV  240

Query  238  RSSELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQAVAILTEL  297
            R+ ELR+ARW +ID++  +W IPAE              KM+ PH+VPLS Q + ++ +L
Sbjct  241  RTQELRFARWEDIDFETKLWEIPAE------------VMKMKRPHIVPLSEQVIMLFKQL  288

Query  298  QTWAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGL-  356
            +  + ++ L+F G +DPRKPIS +++N+A+ ++GY     + GHGFR    + L E G+ 
Sbjct  289  EPISKHHPLVFIGRNDPRKPISKESINQAIELLGYKGR--LTGHGFRHTMSTILHEQGFN  346

Query  357  --WSRDAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDA  401
              W    +E Q++H ++N++R +Y H A  L+ RR M+QW AD++D+
Sbjct  347  SAW----IEMQLAHVDKNSIRDTYNH-ALYLDGRREMMQWYADYIDS  388

248) ECUMN_3322 in NC_011751


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  304 bits (1138),  Expect = 7e-84, Method: Compositional matrix adjust.
 Identities = 169/407 (42%), Positives = 273/407 (68%), Gaps = 25/407 (6%)

Query  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60
            MALTD K+++AKP DK+YKL+DG+GM+LL++ NGS+YWR++YR+ GKEK L++GVYP+V+
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQL--SFEHIARRWHA-SNKQWAQSHS  117
            L++AR KR EARKL++ G DP E K+  K+  ++ L  +FE IAR WH     +W+    
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  118  DKVLKSLETHVFPFIGNRDITTLSTPDLLIPVRAAEVKQIYEIASRLQQRISAVMRYAVQ  177
            D ++ ++E ++FP+IG+R I+ +    LL ++R  E +   E   +++QR + V RYA+ 
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  178  SGIIRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIDGYKGQPVTRLAVMLNLLVFI  237
            +G   YNPA D+A+AL+T K+ H P L  + LP++L+ + GY G  +T+ A  + +L  +
Sbjct  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV  240

Query  238  RSSELRYARWSEIDIDNAMWTIPAELEPLPGVKFSYRGSKMRTPHLVPLSQQAVAILAEL  297
            R+ ELR+ARW +ID++  +W IPAE+             KM+ PH+VPLS+Q + ++ +L
Sbjct  241  RTQELRFARWEDIDFETKLWEIPAEV------------MKMKRPHIVPLSEQVIMLFKQL  288

Query  298  QTWAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTKEVCGHGFRAMACSALIESGL-  356
            +  + ++ L+F G +DPRKPIS +++N+A+ ++GY     + GHGFR    + L E G+ 
Sbjct  289  EPISKHHPLVFIGRNDPRKPISKESINQAIELLGYKGR--LTGHGFRHTMSTILHEQGFN  346

Query  357  --WSRDAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDA  401
              W    +E Q++H ++N++R +Y H A  L+ RR M+QW AD++D+
Sbjct  347  SAW----IEMQLAHVDKNSIRDTYNH-ALYLDGRREMMQWYADYIDS  388

249) intS in NC_013941


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  303 bits (1134),  Expect = 1e-83, Method: Compositional matrix adjust.
 Identities = 182/387 (48%), Positives = 267/387 (69%), Gaps = 7/387 (1%)

Query  14   LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTLQ  73
            LT  ++ +AKPK+KPY+L DG G+YL +  +G K W+++Y++ GKEK+L++G YP +TL 
Sbjct  3    LTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVTLA  62

Query  74   EARDKAWTARKDISVGIDPVkakkassnnnsfs------aIYKEWYEHKRQVWSAAYATE  127
            +AR+K   ARK ++ G DP  AKK     +  S      AI +EW + K + WS  Y  E
Sbjct  63   DAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYRDE  122

Query  128  LAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTG  187
            +   F+ DI+P IG   I +I PM+LLE +R+ E RGA+E+  K R+RCGEVFRYAIVTG
Sbjct  123  IIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIVTG  182

Query  188  RAKYNPAPDLAEAMKGYRKKNFPFLPADQIPAFNKALATFSGSIVSLIATKVLRYTALRT  247
            RA YNPAPDLA A+   +K +FPFL A+++P F + LA ++GSI++  AT+++  T++RT
Sbjct  183  RADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGVRT  242

Query  248  KELRSMQWKNVDFENRIITIEASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEFVFAG  307
            +ELR  +W ++DFE ++  I A VMK ++ H+VP+S+QV+ L+  L +I+K  + +VF G
Sbjct  243  QELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHP-LVFIG  301

Query  308  RNDKKKSICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNEHEWPADAIEVQLAHANGGS  367
            RND +K+I  +++   I  +GY G  +GHGFRH  STI++E+   +  IE+QLAH +  S
Sbjct  302  RNDPRKPISKESINQAIELLGYKGRLTGHGFRHTMSTILHEQGFNSAWIEMQLAHVDKNS  361

Query  368  VRGIYNHAQYLDKCREMMQWWADWLDG  394
            +R+ YNHA YLD  REMMQW AD +D+
Sbjct  362  IRDTYNHALYLDGRREMMQWYADYIDS  388

250) ECABU_c32560 in NC_017631


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  303 bits (1135),  Expect = 1e-83, Method: Compositional matrix adjust.
 Identities = 169/407 (42%), Positives = 272/407 (67%), Gaps = 25/407 (6%)

Query  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60
            MALTD K+++AKP DK+YKL+DG+GM+LL++ NGS+YWR++YR+ GKEK L++GVYP+V+
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQL--SFEHIARRWHA-SNKQWAQSHS  117
            L++AR KR EARKL++ G DP E K+  K+  ++ L  +FE IAR WH     +W+    
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  118  DKVLKSLETHVFPFIGNRDITTLSTPDLLIPVRAAEVKQIYEIASRLQQRISAVMRYAVQ  177
            D ++ ++E ++FP+IG+R I+ +    LL ++R  E +   E   +++QR + V RYA+ 
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  178  SGIIRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIDGYKGQPVTRLAVMLNLLVFI  237
            +G   YNPA D+A+AL+T K+ H P L  + LP++L+ + GY G  +T+ A  + +L  +
Sbjct  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV  240

Query  238  RSSELRYARWSEIDIDNAMWTIPAEREPLPGVKFSYRGSKMRTPHLVPLSQQAVAILAEL  297
            R+ ELR+ARW +ID++  +W IPAE              KM+ PH+VPLS+Q + ++ +L
Sbjct  241  RTQELRFARWEDIDFETKLWEIPAE------------VMKMKRPHIVPLSEQVIMLFKQL  288

Query  298  QTWAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTKEVCGHGFRAMACSALIESGL-  356
            +  + ++ L+F G +DPRKPIS +++N+A+ ++GY     + GHGFR    + L E G+ 
Sbjct  289  EPISKHHPLVFIGRNDPRKPISKESINQAIELLGYKGR--LTGHGFRHTMSTILHEQGFN  346

Query  357  --WSRDAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDA  401
              W    +E Q++H ++N++R +Y H A  L+ RR M+QW AD++D+
Sbjct  347  SAW----IEMQLAHVDKNSIRDTYNH-ALYLDGRREMMQWYADYIDS  388

251) int in NC_008563


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  303 bits (1135),  Expect = 1e-83, Method: Compositional matrix adjust.
 Identities = 169/407 (42%), Positives = 272/407 (67%), Gaps = 25/407 (6%)

Query  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60
            MALTD K+++AKP DK+YKL+DG+GM+LL++ NGS+YWR++YR+ GKEK L++GVYP+V+
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQL--SFEHIARRWHA-SNKQWAQSHS  117
            L++AR KR EARKL++ G DP E K+  K+  ++ L  +FE IAR WH     +W+    
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  118  DKVLKSLETHVFPFIGNRDITTLSTPDLLIPVRAAEVKQIYEIASRLQQRISAVMRYAVQ  177
            D ++ ++E ++FP+IG+R I+ +    LL ++R  E +   E   +++QR + V RYA+ 
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  178  SGIIRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIDGYKGQPVTRLAVMLNLLVFI  237
            +G   YNPA D+A+AL+T K+ H P L  + LP++L+ + GY G  +T+ A  + +L  +
Sbjct  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV  240

Query  238  RSSELRYARWSEIDIDNAMWTIPAEREPLPGVKFSYRGSKMRTPHLVPLSQQAVAILAEL  297
            R+ ELR+ARW +ID++  +W IPAE              KM+ PH+VPLS+Q + ++ +L
Sbjct  241  RTQELRFARWEDIDFETKLWEIPAE------------VMKMKRPHIVPLSEQVIMLFKQL  288

Query  298  QTWAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTKEVCGHGFRAMACSALIESGL-  356
            +  + ++ L+F G +DPRKPIS +++N+A+ ++GY     + GHGFR    + L E G+ 
Sbjct  289  EPISKHHPLVFIGRNDPRKPISKESINQAIELLGYKGR--LTGHGFRHTMSTILHEQGFN  346

Query  357  --WSRDAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDA  401
              W    +E Q++H ++N++R +Y H A  L+ RR M+QW AD++D+
Sbjct  347  SAW----IEMQLAHVDKNSIRDTYNH-ALYLDGRREMMQWYADYIDS  388

252) c3556 in NC_004431


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  303 bits (1134),  Expect = 1e-83, Method: Compositional matrix adjust.
 Identities = 168/407 (42%), Positives = 272/407 (67%), Gaps = 25/407 (6%)

Query  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60
            MALTD K+++AKP DK+YKL+DG+GM+LL++ NGS+YWR++YR+ GKEK L++GVYP+V+
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQL--SFEHIARRWHA-SNKQWAQSHS  117
            L++AR KR EARKL++ G DP E K+  K+  ++ L  +FE IAR WH     +W+    
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  118  DKVLKSLETHVFPFIGNRDITTLSTPDLLIPVRAAEVKQIYEIASRLQQRISAVMRYAVQ  177
            D ++ ++E ++FP+IG+R I+ +    LL ++R  E +   E   +++QR + V RYA+ 
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  178  SGIIRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRINSYKGQPVTRLAVMLNLLVFI  237
            +G   YNPA D+A+AL+T K+ H P L  + LP++L+ + +Y G  +T+ A  + +L  +
Sbjct  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV  240

Query  238  RSSELRYARWSEIDIDNAMWTIPAERKPLPGVKFSHRGSKMRTPHLVPLSQQAVAILAEL  297
            R+ ELR+ARW +ID++  +W IPAE              KM+ PH+VPLS+Q + ++ +L
Sbjct  241  RTQELRFARWEDIDFETKLWEIPAE------------VMKMKRPHIVPLSEQVIMLFKQL  288

Query  298  QTWAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTKEVCGHGFRAMACSALIESGL-  356
            +  + ++ L+F G +DPRKPIS +++N+A+ ++GY     + GHGFR    + L E G+ 
Sbjct  289  EPISKHHPLVFIGRNDPRKPISKESINQAIELLGYKGR--LTGHGFRHTMSTILHEQGFN  346

Query  357  --WSRDAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDA  401
              W    +E Q++H ++N++R +Y H A  L+ RR M+QW AD++D+
Sbjct  347  SAW----IEMQLAHVDKNSIRDTYNH-ALYLDGRREMMQWYADYIDS  388

253) c5216 in NC_004431


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  303 bits (1134),  Expect = 1e-83, Method: Compositional matrix adjust.
 Identities = 168/407 (42%), Positives = 273/407 (68%), Gaps = 25/407 (6%)

Query  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60
            MALTD K+++AKP DK+YKL+DG+GM+LL++ NGS+YWR++YR+ GKEK L++GVYP+V+
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQL--SFEHIARRWHA-SNKQWAQSHS  117
            L++AR KR EARKL++ G DP E K+  K+  ++ L  +FE IAR WH     +W+    
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  118  DKVLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQ  177
            D ++ ++E ++FP+IG+R I+ ++   LL ++R  E +   E   +++QR + V RYA+ 
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  178  SGIIRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRISSYKGQPVTQLAVMLNLLVFI  237
            +G   YNPA D+A+AL+T K+ H P L  + LP++L+ +++Y G  +T+ A  + +L  +
Sbjct  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV  240

Query  238  RSSELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQAVAILTEL  297
            R+ ELR+ARW +ID++  +W IPAE              KM+ PH+VPLS Q + ++ +L
Sbjct  241  RTQELRFARWEDIDFETKLWEIPAE------------VMKMKRPHIVPLSEQVIMLFKQL  288

Query  298  QTWAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQEVCGHGFRAMACSALIESGL-  356
            +  + ++ L+F G +DPRKPIS +++N+A+ ++GY     + GHGFR    + L E G+ 
Sbjct  289  EPISKHHPLVFIGRNDPRKPISKESINQAIELLGYKGR--LTGHGFRHTMSTILHEQGFN  346

Query  357  --WSRDAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDA  401
              W    +E Q++H ++N++R +Y H A  L+ RR M+QW AD++D+
Sbjct  347  SAW----IEMQLAHVDKNSIRDTYNH-ALYLDGRREMMQWYADYIDS  388

254) i14_3273 in NC_017652


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  303 bits (1135),  Expect = 1e-83, Method: Compositional matrix adjust.
 Identities = 169/407 (42%), Positives = 272/407 (67%), Gaps = 25/407 (6%)

Query  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60
            MALTD K+++AKP DK+YKL+DG+GM+LL++ NGS+YWR++YR+ GKEK L++GVYP+V+
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQL--SFEHIARRWHA-SNKQWAQSHS  117
            L++AR KR EARKL++ G DP E K+  K+  ++ L  +FE IAR WH     +W+    
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  118  DKVLKSLETHVFPFIGNRDITTLSTPDLLIPVRAAEVKQIYEIASRLQQRISAVMRYAVQ  177
            D ++ ++E ++FP+IG+R I+ +    LL ++R  E +   E   +++QR + V RYA+ 
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  178  SGIIRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIDGYKGQPVTRLAVMLNLLVFI  237
            +G   YNPA D+A+AL+T K+ H P L  + LP++L+ + GY G  +T+ A  + +L  +
Sbjct  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV  240

Query  238  RSSELRYARWSEIDIDNAMWTIPAEREPLPGVKFSYRGSKMRTPHLVPLSQQAVAILAEL  297
            R+ ELR+ARW +ID++  +W IPAE              KM+ PH+VPLS+Q + ++ +L
Sbjct  241  RTQELRFARWEDIDFETKLWEIPAE------------VMKMKRPHIVPLSEQVIMLFKQL  288

Query  298  QTWAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTKEVCGHGFRAMACSALIESGL-  356
            +  + ++ L+F G +DPRKPIS +++N+A+ ++GY     + GHGFR    + L E G+ 
Sbjct  289  EPISKHHPLVFIGRNDPRKPISKESINQAIELLGYKGR--LTGHGFRHTMSTILHEQGFN  346

Query  357  --WSRDAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDA  401
              W    +E Q++H ++N++R +Y H A  L+ RR M+QW AD++D+
Sbjct  347  SAW----IEMQLAHVDKNSIRDTYNH-ALYLDGRREMMQWYADYIDS  388

255) i02_3273 in NC_017651


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  303 bits (1135),  Expect = 1e-83, Method: Compositional matrix adjust.
 Identities = 169/407 (42%), Positives = 272/407 (67%), Gaps = 25/407 (6%)

Query  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60
            MALTD K+++AKP DK+YKL+DG+GM+LL++ NGS+YWR++YR+ GKEK L++GVYP+V+
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQL--SFEHIARRWHA-SNKQWAQSHS  117
            L++AR KR EARKL++ G DP E K+  K+  ++ L  +FE IAR WH     +W+    
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  118  DKVLKSLETHVFPFIGNRDITTLSTPDLLIPVRAAEVKQIYEIASRLQQRISAVMRYAVQ  177
            D ++ ++E ++FP+IG+R I+ +    LL ++R  E +   E   +++QR + V RYA+ 
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  178  SGIIRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIDGYKGQPVTRLAVMLNLLVFI  237
            +G   YNPA D+A+AL+T K+ H P L  + LP++L+ + GY G  +T+ A  + +L  +
Sbjct  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV  240

Query  238  RSSELRYARWSEIDIDNAMWTIPAEREPLPGVKFSYRGSKMRTPHLVPLSQQAVAILAEL  297
            R+ ELR+ARW +ID++  +W IPAE              KM+ PH+VPLS+Q + ++ +L
Sbjct  241  RTQELRFARWEDIDFETKLWEIPAE------------VMKMKRPHIVPLSEQVIMLFKQL  288

Query  298  QTWAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTKEVCGHGFRAMACSALIESGL-  356
            +  + ++ L+F G +DPRKPIS +++N+A+ ++GY     + GHGFR    + L E G+ 
Sbjct  289  EPISKHHPLVFIGRNDPRKPISKESINQAIELLGYKGR--LTGHGFRHTMSTILHEQGFN  346

Query  357  --WSRDAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDA  401
              W    +E Q++H ++N++R +Y H A  L+ RR M+QW AD++D+
Sbjct  347  SAW----IEMQLAHVDKNSIRDTYNH-ALYLDGRREMMQWYADYIDS  388

256) EcE24377A_3314 in NC_009801


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  303 bits (1134),  Expect = 1e-83, Method: Compositional matrix adjust.
 Identities = 170/407 (42%), Positives = 272/407 (67%), Gaps = 25/407 (6%)

Query  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLIHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60
            MALTD K+++AKP DK+YKL+DG+GM+LLI+ NGS+YWR++YR+ GKEK L++GVYP+V+
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   LSEARTKRDEARKLISEGIDPCEQKRVKKVVPDLQL--SFEHIARRWHA-SNKQWAQSHS  117
            L++AR KR EARKL++ G DP E K+  K+  ++ L  +FE IAR WH     +W+    
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  118  DKVLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQ  177
            D ++ ++E ++FP+IG+R I+ ++   LL ++R  E +   E   +++QR + V RYA+ 
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  178  SGIIRYNPALDMAGALTTVKRQHRPALNLSRLPELLSRIDGYKGQPVTRLAVMLNLLVFI  237
            +G   YNPA D+A+AL+T K+ H P L  + LP++L+ + GY G  +T+ A  + +L  +
Sbjct  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV  240

Query  238  RSSELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQAVAILTEL  297
            R+ ELR+ARW +ID++  +W IPAE              KM+ PH+VPLS Q + ++ +L
Sbjct  241  RTQELRFARWEDIDFETKLWEIPAE------------VMKMKRPHIVPLSEQVIMLFKQL  288

Query  298  QTWAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQEVCGHGFRAMACSALIESGL-  356
            +  + ++ L+F G +DPRKPIS +++N+A+ ++GY     + GHGFR    + L E G+ 
Sbjct  289  EPISKHHPLVFIGRNDPRKPISKESINQAIELLGYKGR--LTGHGFRHTMSTILHEQGFN  346

Query  357  --WSRDAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDA  401
              W    +E Q++H ++N++R +Y H A  L+ RR M+QW AD++D+
Sbjct  347  SAW----IEMQLAHVDKNSIRDTYNH-ALYLDGRREMMQWYADYIDS  388

257) int in NC_011745


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  303 bits (1135),  Expect = 1e-83, Method: Compositional matrix adjust.
 Identities = 168/407 (42%), Positives = 274/407 (68%), Gaps = 25/407 (6%)

Query  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60
            MALTD K+++AKP DK+YKL+DG+GM+LL++ NGS+YWR++YR+ GKEK L++GVYP+V+
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQL--SFEHIARRWHA-SNKQWAQSHS  117
            L++AR KR EARKL++ G DP E K+  K+  ++ L  +FE IAR WH     +W+    
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  118  DKVLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQ  177
            D ++ ++E ++FP+IG+R I+ ++   LL ++R  E +   E   +++QR + V RYA+ 
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  178  SGIIRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFI  237
            +G   YNPA D+A+AL+T K+ H P L  + LP++L+ +++Y G  +T+ A  + +L  +
Sbjct  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV  240

Query  238  RSNELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQAVAILTEL  297
            R++ELR+ARW +ID++  +W IPAE              KM+ PH+VPLS Q + ++ +L
Sbjct  241  RTQELRFARWEDIDFETKLWEIPAE------------VMKMKRPHIVPLSEQVIMLFKQL  288

Query  298  QTWAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGL-  356
            +  + ++ L+F G +DPRKPIS +++N+A+ ++GY     + GHGFR    + L E G+ 
Sbjct  289  EPISKHHPLVFIGRNDPRKPISKESINQAIELLGYKGR--LTGHGFRHTMSTILHEQGFN  346

Query  357  --WSRDAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDA  401
              W    +E Q++H ++N++R +Y H A  L+ RR M+QW AD++D+
Sbjct  347  SAW----IEMQLAHVDKNSIRDTYNH-ALYLDGRREMMQWYADYIDS  388

258) int in NC_017644


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  303 bits (1135),  Expect = 1e-83, Method: Compositional matrix adjust.
 Identities = 169/407 (42%), Positives = 272/407 (67%), Gaps = 25/407 (6%)

Query  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60
            MALTD K+++AKP DK+YKL+DG+GM+LL++ NGS+YWR++YR+ GKEK L++GVYP+V+
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQL--SFEHIARRWHA-SNKQWAQSHS  117
            L++AR KR EARKL++ G DP E K+  K+  ++ L  +FE IAR WH     +W+    
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  118  DKVLKSLETHVFPFIGNRDITTLSTPDLLIPVRAAEVKQIYEIASRLQQRISAVMRYAVQ  177
            D ++ ++E ++FP+IG+R I+ +    LL ++R  E +   E   +++QR + V RYA+ 
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  178  SGIIRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIDGYKGQPVTRLAVMLNLLVFI  237
            +G   YNPA D+A+AL+T K+ H P L  + LP++L+ + GY G  +T+ A  + +L  +
Sbjct  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV  240

Query  238  RSSELRYARWSEIDIDNAMWTIPAEREPLPGVKFSYRGSKMRTPHLVPLSQQAVAILAEL  297
            R+ ELR+ARW +ID++  +W IPAE              KM+ PH+VPLS+Q + ++ +L
Sbjct  241  RTQELRFARWEDIDFETKLWEIPAE------------VMKMKRPHIVPLSEQVIMLFKQL  288

Query  298  QTWAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTKEVCGHGFRAMACSALIESGL-  356
            +  + ++ L+F G +DPRKPIS +++N+A+ ++GY     + GHGFR    + L E G+ 
Sbjct  289  EPISKHHPLVFIGRNDPRKPISKESINQAIELLGYKGR--LTGHGFRHTMSTILHEQGFN  346

Query  357  --WSRDAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDA  401
              W    +E Q++H ++N++R +Y H A  L+ RR M+QW AD++D+
Sbjct  347  SAW----IEMQLAHVDKNSIRDTYNH-ALYLDGRREMMQWYADYIDS  388

259) CE10_3417 in NC_017646


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  303 bits (1135),  Expect = 1e-83, Method: Compositional matrix adjust.
 Identities = 169/407 (42%), Positives = 272/407 (67%), Gaps = 25/407 (6%)

Query  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60
            MALTD K+++AKP DK+YKL+DG+GM+LL++ NGS+YWR++YR+ GKEK L++GVYP+V+
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQL--SFEHIARRWHA-SNKQWAQSHS  117
            L++AR KR EARKL++ G DP E K+  K+  ++ L  +FE IAR WH     +W+    
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  118  DKVLKSLETHVFPFIGNRDITTLSTPDLLIPVRAAEVKQIYEIASRLQQRISAVMRYAVQ  177
            D ++ ++E ++FP+IG+R I+ +    LL ++R  E +   E   +++QR + V RYA+ 
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  178  SGIIRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIDGYKGQPVTRLAVMLNLLVFI  237
            +G   YNPA D+A+AL+T K+ H P L  + LP++L+ + GY G  +T+ A  + +L  +
Sbjct  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV  240

Query  238  RSSELRYARWSEIDIDNAMWTIPAEREPLPGVKFSYRGSKMRTPHLVPLSQQAVAILAEL  297
            R+ ELR+ARW +ID++  +W IPAE              KM+ PH+VPLS+Q + ++ +L
Sbjct  241  RTQELRFARWEDIDFETKLWEIPAE------------VMKMKRPHIVPLSEQVIMLFKQL  288

Query  298  QTWAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTKEVCGHGFRAMACSALIESGL-  356
            +  + ++ L+F G +DPRKPIS +++N+A+ ++GY     + GHGFR    + L E G+ 
Sbjct  289  EPISKHHPLVFIGRNDPRKPISKESINQAIELLGYKGR--LTGHGFRHTMSTILHEQGFN  346

Query  357  --WSRDAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDA  401
              W    +E Q++H ++N++R +Y H A  L+ RR M+QW AD++D+
Sbjct  347  SAW----IEMQLAHVDKNSIRDTYNH-ALYLDGRREMMQWYADYIDS  388

260) ECS88_4720 in NC_011742


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  303 bits (1135),  Expect = 1e-83, Method: Compositional matrix adjust.
 Identities = 169/407 (42%), Positives = 272/407 (67%), Gaps = 25/407 (6%)

Query  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60
            MALTD K+++AKP DK+YKL+DG+GM+LL++ NGS+YWR++YR+ GKEK L++GVYP+V+
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQL--SFEHIARRWHA-SNKQWAQSHS  117
            L++AR KR EARKL++ G DP E K+  K+  ++ L  +FE IAR WH     +W+    
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  118  DKVLKSLETHVFPFIGNRDITTLSTPDLLIPVRAAEVKQIYEIASRLQQRISAVMRYAVQ  177
            D ++ ++E ++FP+IG+R I+ +    LL ++R  E +   E   +++QR + V RYA+ 
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  178  SGIIRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIDGYKGQPVTRLAVMLNLLVFI  237
            +G   YNPA D+A+AL+T K+ H P L  + LP++L+ + GY G  +T+ A  + +L  +
Sbjct  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV  240

Query  238  RSSELRYARWSEIDIDNAMWTIPAEREPLPGVKFSYRGSKMRTPHLVPLSQQAVAILAEL  297
            R+ ELR+ARW +ID++  +W IPAE              KM+ PH+VPLS+Q + ++ +L
Sbjct  241  RTQELRFARWEDIDFETKLWEIPAE------------VMKMKRPHIVPLSEQVIMLFKQL  288

Query  298  QTWAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTKEVCGHGFRAMACSALIESGL-  356
            +  + ++ L+F G +DPRKPIS +++N+A+ ++GY     + GHGFR    + L E G+ 
Sbjct  289  EPISKHHPLVFIGRNDPRKPISKESINQAIELLGYKGR--LTGHGFRHTMSTILHEQGFN  346

Query  357  --WSRDAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDA  401
              W    +E Q++H ++N++R +Y H A  L+ RR M+QW AD++D+
Sbjct  347  SAW----IEMQLAHVDKNSIRDTYNH-ALYLDGRREMMQWYADYIDS  388

261) ECO55CA74_14300 in NC_017656


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  303 bits (1135),  Expect = 9e-84, Method: Compositional matrix adjust.
 Identities = 182/387 (48%), Positives = 267/387 (69%), Gaps = 7/387 (1%)

Query  2    LTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKIDGKEKILTVGKYPLMTLQ  61
            LT  ++ +AKPK+KPY+L DG G+YL +  +G K W+++Y++ GKEK+L++G YP +TL 
Sbjct  3    LTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVTLA  62

Query  62   EARDKAWTARKDISVGIDPVkakkassnnnsfs------aIYKEWYEHKRQVWSAAYATE  115
            +AR+K   ARK ++ G DP  AKK     +  S      AI +EW + K + WS  Y  E
Sbjct  63   DAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYRDE  122

Query  116  LAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKARRRCGEVFRYAIVTG  175
            +   F+ DI+P IG   I +I PM+LLE +R+ E RGA+E+  K R+RCGEVFRYAIVTG
Sbjct  123  IIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIVTG  182

Query  176  RAKYNPAPDLAEAMKGYRKKNFPFLPADQIPAFNKALATFSGSIVSLIATKVLRYTALRT  235
            RA YNPAPDLA A+   +K +FPFL A+++P F + LA ++GSI++  AT+++  T++RT
Sbjct  183  RADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGVRT  242

Query  236  KELRSMQWKNVDFENRIITIEASVMKGRKIHVVPMSDQVVELLTTLSSITKPVSEFVFAG  295
            +ELR  +W ++DFE ++  I A VMK ++ H+VP+S+QV+ L+  L +I+K  + +VF G
Sbjct  243  QELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHP-LVFIG  301

Query  296  RNDKKKSICENAVLLVIKQIGYEGLESGHGFRHEFSTIMNEHEWPADAIEVQLAHANGGS  355
            RND +K+I  +++   I  +GY G  +GHGFRH  STI++E+   +  IE+QLAH +  S
Sbjct  302  RNDPRKPISKESINQAIELLGYKGRLTGHGFRHTMSTILHEQGFNSAWIEMQLAHVDKNS  361

Query  356  VRGIYNHAQYLDKCREMMQWWADWLDG  382
            +R+ YNHA YLD  REMMQW AD +D+
Sbjct  362  IRDTYNHALYLDGRREMMQWYADYIDS  388

262) ECO103_3550 in NC_013353


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  303 bits (1137),  Expect = 9e-84, Method: Compositional matrix adjust.
 Identities = 170/411 (42%), Positives = 275/411 (67%), Gaps = 25/411 (6%)

Query  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60
            MALTD K+++AKP DK+YKL+DG+GM+LL++ NGS+YWR++YR+ GKEK L++GVYP+V+
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQL--SFEHIARRWHA-SNKQWAQSHS  117
            L++AR KR EARKL++ G DP E K+  K+  ++ L  +FE IAR WH     +W+    
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  118  DKVLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQ  177
            D ++ ++E ++FP+IG+R I+ ++   LL ++R  E +   E   +++QR + V RYA+ 
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  178  SGIIRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFI  237
            +G   YNPA D+A+AL+T K+ H P L  + LP++L+ +++Y G  +T+ A  + +L  +
Sbjct  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV  240

Query  238  RSSELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAEL  297
            R+ ELR+ARW +ID++  +W IPAE              KM+ PH+VPLS QV+ ++ +L
Sbjct  241  RTQELRFARWEDIDFETKLWEIPAE------------VMKMKRPHIVPLSEQVIMLFKQL  288

Query  298  QTWAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGL-  356
            +  + ++ L+F G +DPRKPIS +++N+A+ ++GY     + GHGFR    + L E G+ 
Sbjct  289  EPISKHHPLVFIGRNDPRKPISKESINQAIELLGYKGR--LTGHGFRHTMSTILHEQGFN  346

Query  357  --WSRDAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRER  405
              W    +E Q++H ++N++R +Y H A  L+ RR M+QW AD++D+   R
Sbjct  347  SAW----IEMQLAHVDKNSIRDTYNH-ALYLDGRREMMQWYADYIDSLSSR  392

263) ECO103_4929 in NC_013353


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  303 bits (1137),  Expect = 9e-84, Method: Compositional matrix adjust.
 Identities = 170/411 (42%), Positives = 275/411 (67%), Gaps = 25/411 (6%)

Query  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60
            MALTD K+++AKP DK+YKL+DG+GM+LL++ NGS+YWR++YR+ GKEK L++GVYP+V+
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQL--SFEHIARRWHA-SNKQWAQSHS  117
            L++AR KR EARKL++ G DP E K+  K+  ++ L  +FE IAR WH     +W+    
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  118  DKVLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQ  177
            D ++ ++E ++FP+IG+R I+ ++   LL ++R  E +   E   +++QR + V RYA+ 
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  178  SGIIRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFI  237
            +G   YNPA D+A+AL+T K+ H P L  + LP++L+ +++Y G  +T+ A  + +L  +
Sbjct  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV  240

Query  238  RSSELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAEL  297
            R+ ELR+ARW +ID++  +W IPAE              KM+ PH+VPLS QV+ ++ +L
Sbjct  241  RTQELRFARWEDIDFETKLWEIPAE------------VMKMKRPHIVPLSEQVIMLFKQL  288

Query  298  QTWAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGL-  356
            +  + ++ L+F G +DPRKPIS +++N+A+ ++GY     + GHGFR    + L E G+ 
Sbjct  289  EPISKHHPLVFIGRNDPRKPISKESINQAIELLGYKGR--LTGHGFRHTMSTILHEQGFN  346

Query  357  --WSRDAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRER  405
              W    +E Q++H ++N++R +Y H A  L+ RR M+QW AD++D+   R
Sbjct  347  SAW----IEMQLAHVDKNSIRDTYNH-ALYLDGRREMMQWYADYIDSLSSR  392

264) ECO111_5079 in NC_013364


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  303 bits (1137),  Expect = 9e-84, Method: Compositional matrix adjust.
 Identities = 170/411 (42%), Positives = 275/411 (67%), Gaps = 25/411 (6%)

Query  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60
            MALTD K+++AKP DK+YKL+DG+GM+LL++ NGS+YWR++YR+ GKEK L++GVYP+V+
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQL--SFEHIARRWHA-SNKQWAQSHS  117
            L++AR KR EARKL++ G DP E K+  K+  ++ L  +FE IAR WH     +W+    
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  118  DKVLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQ  177
            D ++ ++E ++FP+IG+R I+ ++   LL ++R  E +   E   +++QR + V RYA+ 
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  178  SGIIRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFI  237
            +G   YNPA D+A+AL+T K+ H P L  + LP++L+ +++Y G  +T+ A  + +L  +
Sbjct  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV  240

Query  238  RSSELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAEL  297
            R+ ELR+ARW +ID++  +W IPAE              KM+ PH+VPLS QV+ ++ +L
Sbjct  241  RTQELRFARWEDIDFETKLWEIPAE------------VMKMKRPHIVPLSEQVIMLFKQL  288

Query  298  QTWAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGL-  356
            +  + ++ L+F G +DPRKPIS +++N+A+ ++GY     + GHGFR    + L E G+ 
Sbjct  289  EPISKHHPLVFIGRNDPRKPISKESINQAIELLGYKGR--LTGHGFRHTMSTILHEQGFN  346

Query  357  --WSRDAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRER  405
              W    +E Q++H ++N++R +Y H A  L+ RR M+QW AD++D+   R
Sbjct  347  SAW----IEMQLAHVDKNSIRDTYNH-ALYLDGRREMMQWYADYIDSLSSR  392

265) E2348C_3220 in NC_011601


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  303 bits (1137),  Expect = 9e-84, Method: Compositional matrix adjust.
 Identities = 170/411 (42%), Positives = 275/411 (67%), Gaps = 25/411 (6%)

Query  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60
            MALTD K+++AKP DK+YKL+DG+GM+LL++ NGS+YWR++YR+ GKEK L++GVYP+V+
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQL--SFEHIARRWHA-SNKQWAQSHS  117
            L++AR KR EARKL++ G DP E K+  K+  ++ L  +FE IAR WH     +W+    
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  118  DKVLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQ  177
            D ++ ++E ++FP+IG+R I+ ++   LL ++R  E +   E   +++QR + V RYA+ 
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  178  SGIIRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFI  237
            +G   YNPA D+A+AL+T K+ H P L  + LP++L+ +++Y G  +T+ A  + +L  +
Sbjct  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV  240

Query  238  RSSELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAEL  297
            R+ ELR+ARW +ID++  +W IPAE              KM+ PH+VPLS QV+ ++ +L
Sbjct  241  RTQELRFARWEDIDFETKLWEIPAE------------VMKMKRPHIVPLSEQVIMLFKQL  288

Query  298  QTWAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGL-  356
            +  + ++ L+F G +DPRKPIS +++N+A+ ++GY     + GHGFR    + L E G+ 
Sbjct  289  EPISKHHPLVFIGRNDPRKPISKESINQAIELLGYKGR--LTGHGFRHTMSTILHEQGFN  346

Query  357  --WSRDAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRER  405
              W    +E Q++H ++N++R +Y H A  L+ RR M+QW AD++D+   R
Sbjct  347  SAW----IEMQLAHVDKNSIRDTYNH-ALYLDGRREMMQWYADYIDSLSSR  392

266) ECO26_5300 in NC_013361


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  303 bits (1137),  Expect = 9e-84, Method: Compositional matrix adjust.
 Identities = 170/411 (42%), Positives = 275/411 (67%), Gaps = 25/411 (6%)

Query  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60
            MALTD K+++AKP DK+YKL+DG+GM+LL++ NGS+YWR++YR+ GKEK L++GVYP+V+
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQL--SFEHIARRWHA-SNKQWAQSHS  117
            L++AR KR EARKL++ G DP E K+  K+  ++ L  +FE IAR WH     +W+    
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  118  DKVLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQ  177
            D ++ ++E ++FP+IG+R I+ ++   LL ++R  E +   E   +++QR + V RYA+ 
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  178  SGIIRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFI  237
            +G   YNPA D+A+AL+T K+ H P L  + LP++L+ +++Y G  +T+ A  + +L  +
Sbjct  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV  240

Query  238  RSSELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAEL  297
            R+ ELR+ARW +ID++  +W IPAE              KM+ PH+VPLS QV+ ++ +L
Sbjct  241  RTQELRFARWEDIDFETKLWEIPAE------------VMKMKRPHIVPLSEQVIMLFKQL  288

Query  298  QTWAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGL-  356
            +  + ++ L+F G +DPRKPIS +++N+A+ ++GY     + GHGFR    + L E G+ 
Sbjct  289  EPISKHHPLVFIGRNDPRKPISKESINQAIELLGYKGR--LTGHGFRHTMSTILHEQGFN  346

Query  357  --WSRDAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRER  405
              W    +E Q++H ++N++R +Y H A  L+ RR M+QW AD++D+   R
Sbjct  347  SAW----IEMQLAHVDKNSIRDTYNH-ALYLDGRREMMQWYADYIDSLSSR  392

267) Q7A_2891 in NC_017857


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  302 bits (1130),  Expect = 2e-83, Method: Compositional matrix adjust.
 Identities = 176/391 (46%), Positives = 265/391 (68%), Gaps = 4/391 (1%)

Query  2    LTDVKIKALKPKDKLYAVSDEKGLYIEVSTTGGKWWRFKFRFDGKQKRLSVGTYPDVGLK  61
            LTD+K+K+ KPKDK Y ++D  G+Y+ ++T G+K WR K+RF GK+K LS+G YPDV L 
Sbjct  3    LTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVTLA  62

Query  62   QAREQRDELRKQIANGVDPSDIRKAEKQLNAGQL--SFEFVAREWHQKFRHRWSEKYALN  119
            +ARE+R E RK +A G DP++ +K EK  +   L  +FE +AREWHQ   +RWS +Y  +
Sbjct  63   DAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYRDE  122

Query  120  TISRLEREVFPFIGSKNINDIKAPELLAVLRRMESRGILETAHRVHQKCGQIFRYAVATG  179
             I  +E+++FP+IG + I +IK+  LL  LR+ME RG LE  ++V+Q+CG++FRYA+ TG
Sbjct  123  IIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIVTG  182

Query  180  RAERDPSTDLKGALPPVKVKHHASIIEPKQIGGLLRAINGYSGSFVTLCALRLAPLVFVR  239
            RA+ +P+ DL +AL+  K K H +++ ++++  +L  + GY+GS++T  A ++  L  VR
Sbjct  183  RADYNPAPDLASALATPK-KVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGVR  241

Query  240  PGELRHAEWTEFDLEKAEWRIPAEKMKMASVHIVPLSKQAIAVIETLKPLTGSGKYLFPS  299
              ELR A W ++D+E   W IPAE MKM   HIVPLS Q I ++  L P++     +F +
Sbjct  242  TQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHPLVFIG  301

Query  300  IRTITRPMSENTVNGALRRLGYTGDEMVGHGFRSMASTILNEQGWNRDAIERQLAHSERD  359
                 +P+S +++N A+  LGY G  + GHGFR   STIL+EQG N   IE QLAH +++
Sbjct  302  RNDPRKPISKESINQAIELLGYKG-RLTGHGFRHTMSTILHEQGFNSAWIEMQLAHVDKN  360

Query  360  GVRAAYNYAEYLSERKRMMQSWANYLDGLTA  390
            ++R +YN A YL  R+ MMQ  A+Y+D+L++
Sbjct  361  SIRDTYNHALYLDGRREMMQWYADYIDSLSS  391

268) EC042_3174 in NC_017626


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  302 bits (1133),  Expect = 2e-83, Method: Compositional matrix adjust.
 Identities = 170/411 (42%), Positives = 273/411 (67%), Gaps = 25/411 (6%)

Query  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60
            MALTD K+++AKP DK+YKL+DG+GM+LL++ NGS+YWR++YR+ GKEK L++GVYP+V+
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   LSEARTKRDEARKLISEGIDPCEQKRVKKVVPDLQL--SFEHIARRWHA-SNKQWAQSHS  117
            L++AR KR EARKL++ G DP E K+  K+  ++ L  +FE IAR WH     +W+    
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  118  DKVLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQ  177
            D ++ ++E ++FP+IG+R I+ ++   LL ++R  E +   E   +++QR + V RYA+ 
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  178  SGIIRYNPALDMAGALTTVKRQHRPALNLSRLPELLSRIDGYKGQPVTRLAVMLNLLVFI  237
            +G   YNPA D+A+AL+T K+ H P L  + LP++L+ + GY G  +T+ A  + +L  +
Sbjct  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV  240

Query  238  RSSELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQAVAILTEL  297
            R+ ELR+ARW +ID++  +W IPAE              KM+ PH+VPLS Q + ++ +L
Sbjct  241  RTQELRFARWEDIDFETKLWEIPAE------------VMKMKRPHIVPLSEQVIMLFKQL  288

Query  298  QTWAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTRDVCGHGFRAMACSALIESGL-  356
            +  + ++ L+F G +DPRKPIS +++N+A+ ++GY     + GHGFR    + L E G+ 
Sbjct  289  EPISKHHPLVFIGRNDPRKPISKESINQAIELLGYKGR--LTGHGFRHTMSTILHEQGFN  346

Query  357  --WSRDAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRER  405
              W    +E Q++H ++N++R +Y H A  L+ RR M+QW AD++D+   R
Sbjct  347  SAW----IEMQLAHVDKNSIRDTYNH-ALYLDGRREMMQWYADYIDSLSSR  392

269) EC042_4610 in NC_017626


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  302 bits (1133),  Expect = 2e-83, Method: Compositional matrix adjust.
 Identities = 169/407 (42%), Positives = 272/407 (67%), Gaps = 25/407 (6%)

Query  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60
            MALTD K+++AKP DK+YKL+DG+GM+LL++ NGS+YWR++YR+ GKEK L++GVYP+V+
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   LSEARTKRDEARKLISEGIDPCEQKRVKKVVPDLQL--SFEHIARRWHA-SNKQWAQSHS  117
            L++AR KR EARKL++ G DP E K+  K+  ++ L  +FE IAR WH     +W+    
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  118  DKVLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQ  177
            D ++ ++E ++FP+IG+R I+ ++   LL ++R  E +   E   +++QR + V RYA+ 
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  178  SGIIRYNPALDMAGALTTVKRQHRPALNLSRLPELLSRIDGYKGQPVTRLAVMLNLLVFI  237
            +G   YNPA D+A+AL+T K+ H P L  + LP++L+ + GY G  +T+ A  + +L  +
Sbjct  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV  240

Query  238  RSSELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQAVAILTEL  297
            R+ ELR+ARW +ID++  +W IPAE              KM+ PH+VPLS Q + ++ +L
Sbjct  241  RTQELRFARWEDIDFETKLWEIPAE------------VMKMKRPHIVPLSEQVIMLFKQL  288

Query  298  QTWAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQEVCGHGFRAMACSALIESGL-  356
            +  + ++ L+F G +DPRKPIS +++N+A+ ++GY     + GHGFR    + L E G+ 
Sbjct  289  EPISKHHPLVFIGRNDPRKPISKESINQAIELLGYKGR--LTGHGFRHTMSTILHEQGFN  346

Query  357  --WSRDAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDA  401
              W    +E Q++H ++N++R +Y H A  L+ RR M+QW AD++D+
Sbjct  347  SAW----IEMQLAHVDKNSIRDTYNH-ALYLDGRREMMQWYADYIDS  388

270) ECP_2962 in NC_008253


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  302 bits (1131),  Expect = 2e-83, Method: Compositional matrix adjust.
 Identities = 169/411 (42%), Positives = 273/411 (67%), Gaps = 25/411 (6%)

Query  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60
            MALTD K+++AKP DK+YKL+DG+GM+LL++ NGS+YWR++YR+ GKEK L++GVYP+V+
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   LSEARTKRDEARKLISEGIDPCEQKRVKKVVPDLQL--SFEHIARRWHA-SNKQWAQSHS  117
            L++AR KR EARKL++ G DP E K+  K+  ++ L  +FE IAR WH     +W+    
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  118  DKVLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQ  177
            D ++ ++E ++FP+IG+R I+ ++   LL ++R  E +   E   +++QR + V RYA+ 
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  178  SGIIRYNPALDMAGALTTVKRQHRPALNLSRLPELLSRIDGYKGQPVTRLAVMLNLLVFI  237
            +G   YNPA D+A+AL+T K+ H P L  + LP++L+ + GY G  +T+ A  + +L  +
Sbjct  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV  240

Query  238  RSSELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSRMRTPHLVPLSKQAVAILTEL  297
            R+ ELR+ARW +ID++  +W IPAE              +M+ PH+VPLS Q + ++ +L
Sbjct  241  RTQELRFARWEDIDFETKLWEIPAE------------VMKMKRPHIVPLSEQVIMLFKQL  288

Query  298  QTWAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQEVCGHGFRAMACSALIESGL-  356
            +  + ++ L+F G +DPRKPIS +++N+A+ ++GY     + GHGFR    + L E G+ 
Sbjct  289  EPISKHHPLVFIGRNDPRKPISKESINQAIELLGYKGR--LTGHGFRHTMSTILHEQGFN  346

Query  357  --WSRDAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRER  405
              W    +E Q++H ++N++R +Y H A  L+ RR M+QW AD++D+   R
Sbjct  347  SAW----IEMQLAHVDKNSIRDTYNH-ALYLDGRREMMQWYADYIDSLSSR  392

271) int in NC_011748


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  302 bits (1133),  Expect = 2e-83, Method: Compositional matrix adjust.
 Identities = 169/407 (42%), Positives = 272/407 (67%), Gaps = 25/407 (6%)

Query  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60
            MALTD K+++AKP DK+YKL+DG+GM+LL++ NGS+YWR++YR+ GKEK L++GVYP+V+
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   LSEARTKRDEARKLISEGIDPCEQKRVKKVVPDLQL--SFEHIARRWHA-SNKQWAQSHS  117
            L++AR KR EARKL++ G DP E K+  K+  ++ L  +FE IAR WH     +W+    
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  118  DKVLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQ  177
            D ++ ++E ++FP+IG+R I+ ++   LL ++R  E +   E   +++QR + V RYA+ 
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  178  SGIIRYNPALDMAGALTTVKRQHRPALNLSRLPELLSRIDGYKGQPVTRLAVMLNLLVFI  237
            +G   YNPA D+A+AL+T K+ H P L  + LP++L+ + GY G  +T+ A  + +L  +
Sbjct  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV  240

Query  238  RSSELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQAVAILTEL  297
            R+ ELR+ARW +ID++  +W IPAE              KM+ PH+VPLS Q + ++ +L
Sbjct  241  RTQELRFARWEDIDFETKLWEIPAE------------VMKMKRPHIVPLSEQVIMLFKQL  288

Query  298  QTWAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQEVCGHGFRAMACSALIESGL-  356
            +  + ++ L+F G +DPRKPIS +++N+A+ ++GY     + GHGFR    + L E G+ 
Sbjct  289  EPISKHHPLVFIGRNDPRKPISKESINQAIELLGYKGR--LTGHGFRHTMSTILHEQGFN  346

Query  357  --WSRDAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDA  401
              W    +E Q++H ++N++R +Y H A  L+ RR M+QW AD++D+
Sbjct  347  SAW----IEMQLAHVDKNSIRDTYNH-ALYLDGRREMMQWYADYIDS  388

272) EcolC_0747 in NC_010468


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  302 bits (1133),  Expect = 2e-83, Method: Compositional matrix adjust.
 Identities = 169/407 (42%), Positives = 272/407 (67%), Gaps = 25/407 (6%)

Query  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60
            MALTD K+++AKP DK+YKL+DG+GM+LL++ NGS+YWR++YR+ GKEK L++GVYP+V+
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQL--SFEHIARRWHA-SNKQWAQSHS  117
            L++AR KR EARKL++ G DP E K+  K+  ++ L  +FE IAR WH     +W+    
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  118  DKVLKSLETHVFPFIGNRDITTLSTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQ  177
            D ++ ++E ++FP+IG+R I+ +    LL ++R  E +   E   +++QR + V RYA+ 
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  178  SGIIRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIDGYKGLPVTRLAVMLNLLVFI  237
            +G   YNPA D+A+AL+T K+ H P L  + LP++L+ + GY G  +T+ A  + +L  +
Sbjct  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV  240

Query  238  RSSELRYARWSEIDIDNAMWTIPAEREPLPGVKFSYRGSKMRTPHLVPLSQQAVAILAEL  297
            R+ ELR+ARW +ID++  +W IPAE              KM+ PH+VPLS+Q + ++ +L
Sbjct  241  RTQELRFARWEDIDFETKLWEIPAE------------VMKMKRPHIVPLSEQVIMLFKQL  288

Query  298  QTWAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGL-  356
            +  + ++ L+F G +DPRKPIS +++N+A+ ++GY     + GHGFR    + L E G+ 
Sbjct  289  EPISKHHPLVFIGRNDPRKPISKESINQAIELLGYKGR--LTGHGFRHTMSTILHEQGFN  346

Query  357  --WSRDAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDA  401
              W    +E Q++H ++N++R +Y H A  L+ RR M+QW AD++D+
Sbjct  347  SAW----IEMQLAHVDKNSIRDTYNH-ALYLDGRREMMQWYADYIDS  388

273) O3M_04655 in NC_018650


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  302 bits (1133),  Expect = 2e-83, Method: Compositional matrix adjust.
 Identities = 169/407 (42%), Positives = 272/407 (67%), Gaps = 25/407 (6%)

Query  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60
            MALTD K+++AKP DK+YKL+DG+GM+LL++ NGS+YWR++YR+ GKEK L++GVYP+V+
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   LSEARTKRDEARKLISEGIDPCEQKRVKKVVPDLQL--SFEHIARRWHA-SNKQWAQSHS  117
            L++AR KR EARKL++ G DP E K+  K+  ++ L  +FE IAR WH     +W+    
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  118  DKVLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQ  177
            D ++ ++E ++FP+IG+R I+ ++   LL ++R  E +   E   +++QR + V RYA+ 
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  178  SGIIRYNPALDMAGALTTVKRQHRPALNLSRLPELLSRIDGYKGQPVTRLAVMLNLLVFI  237
            +G   YNPA D+A+AL+T K+ H P L  + LP++L+ + GY G  +T+ A  + +L  +
Sbjct  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV  240

Query  238  RSSELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQAVAILTEL  297
            R+ ELR+ARW +ID++  +W IPAE              KM+ PH+VPLS Q + ++ +L
Sbjct  241  RTQELRFARWEDIDFETKLWEIPAE------------VMKMKRPHIVPLSEQVIMLFKQL  288

Query  298  QTWAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQEVCGHGFRAMACSALIESGL-  356
            +  + ++ L+F G +DPRKPIS +++N+A+ ++GY     + GHGFR    + L E G+ 
Sbjct  289  EPISKHHPLVFIGRNDPRKPISKESINQAIELLGYKGR--LTGHGFRHTMSTILHEQGFN  346

Query  357  --WSRDAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDA  401
              W    +E Q++H ++N++R +Y H A  L+ RR M+QW AD++D+
Sbjct  347  SAW----IEMQLAHVDKNSIRDTYNH-ALYLDGRREMMQWYADYIDS  388

274) O3O_21040 in NC_018661


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  302 bits (1133),  Expect = 2e-83, Method: Compositional matrix adjust.
 Identities = 169/407 (42%), Positives = 272/407 (67%), Gaps = 25/407 (6%)

Query  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60
            MALTD K+++AKP DK+YKL+DG+GM+LL++ NGS+YWR++YR+ GKEK L++GVYP+V+
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   LSEARTKRDEARKLISEGIDPCEQKRVKKVVPDLQL--SFEHIARRWHA-SNKQWAQSHS  117
            L++AR KR EARKL++ G DP E K+  K+  ++ L  +FE IAR WH     +W+    
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  118  DKVLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQ  177
            D ++ ++E ++FP+IG+R I+ ++   LL ++R  E +   E   +++QR + V RYA+ 
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  178  SGIIRYNPALDMAGALTTVKRQHRPALNLSRLPELLSRIDGYKGQPVTRLAVMLNLLVFI  237
            +G   YNPA D+A+AL+T K+ H P L  + LP++L+ + GY G  +T+ A  + +L  +
Sbjct  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV  240

Query  238  RSSELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQAVAILTEL  297
            R+ ELR+ARW +ID++  +W IPAE              KM+ PH+VPLS Q + ++ +L
Sbjct  241  RTQELRFARWEDIDFETKLWEIPAE------------VMKMKRPHIVPLSEQVIMLFKQL  288

Query  298  QTWAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQEVCGHGFRAMACSALIESGL-  356
            +  + ++ L+F G +DPRKPIS +++N+A+ ++GY     + GHGFR    + L E G+ 
Sbjct  289  EPISKHHPLVFIGRNDPRKPISKESINQAIELLGYKGR--LTGHGFRHTMSTILHEQGFN  346

Query  357  --WSRDAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDA  401
              W    +E Q++H ++N++R +Y H A  L+ RR M+QW AD++D+
Sbjct  347  SAW----IEMQLAHVDKNSIRDTYNH-ALYLDGRREMMQWYADYIDS  388

275) O3K_04610 in NC_018658


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  302 bits (1133),  Expect = 2e-83, Method: Compositional matrix adjust.
 Identities = 169/407 (42%), Positives = 272/407 (67%), Gaps = 25/407 (6%)

Query  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60
            MALTD K+++AKP DK+YKL+DG+GM+LL++ NGS+YWR++YR+ GKEK L++GVYP+V+
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   LSEARTKRDEARKLISEGIDPCEQKRVKKVVPDLQL--SFEHIARRWHA-SNKQWAQSHS  117
            L++AR KR EARKL++ G DP E K+  K+  ++ L  +FE IAR WH     +W+    
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  118  DKVLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQ  177
            D ++ ++E ++FP+IG+R I+ ++   LL ++R  E +   E   +++QR + V RYA+ 
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  178  SGIIRYNPALDMAGALTTVKRQHRPALNLSRLPELLSRIDGYKGQPVTRLAVMLNLLVFI  237
            +G   YNPA D+A+AL+T K+ H P L  + LP++L+ + GY G  +T+ A  + +L  +
Sbjct  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV  240

Query  238  RSSELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQAVAILTEL  297
            R+ ELR+ARW +ID++  +W IPAE              KM+ PH+VPLS Q + ++ +L
Sbjct  241  RTQELRFARWEDIDFETKLWEIPAE------------VMKMKRPHIVPLSEQVIMLFKQL  288

Query  298  QTWAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQEVCGHGFRAMACSALIESGL-  356
            +  + ++ L+F G +DPRKPIS +++N+A+ ++GY     + GHGFR    + L E G+ 
Sbjct  289  EPISKHHPLVFIGRNDPRKPISKESINQAIELLGYKGR--LTGHGFRHTMSTILHEQGFN  346

Query  357  --WSRDAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDA  401
              W    +E Q++H ++N++R +Y H A  L+ RR M+QW AD++D+
Sbjct  347  SAW----IEMQLAHVDKNSIRDTYNH-ALYLDGRREMMQWYADYIDS  388

276) UMNK88_3667 in NC_017641


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  302 bits (1133),  Expect = 2e-83, Method: Compositional matrix adjust.
 Identities = 169/407 (42%), Positives = 272/407 (67%), Gaps = 25/407 (6%)

Query  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60
            MALTD K+++AKP DK+YKL+DG+GM+LL++ NGS+YWR++YR+ GKEK L++GVYP+V+
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   LSEARTKRDEARKLISEGIDPCEQKRVKKVVPDLQL--SFEHIARRWHA-SNKQWAQSHS  117
            L++AR KR EARKL++ G DP E K+  K+  ++ L  +FE IAR WH     +W+    
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  118  DKVLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQ  177
            D ++ ++E ++FP+IG+R I+ ++   LL ++R  E +   E   +++QR + V RYA+ 
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  178  SGIIRYNPALDMAGALTTVKRQHRPALNLSRLPELLSRIDGYKGQPVTRLAVMLNLLVFI  237
            +G   YNPA D+A+AL+T K+ H P L  + LP++L+ + GY G  +T+ A  + +L  +
Sbjct  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV  240

Query  238  RSSELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQAVAILTEL  297
            R+ ELR+ARW +ID++  +W IPAE              KM+ PH+VPLS Q + ++ +L
Sbjct  241  RTQELRFARWEDIDFETKLWEIPAE------------VMKMKRPHIVPLSEQVIMLFKQL  288

Query  298  QTWAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQEVCGHGFRAMACSALIESGL-  356
            +  + ++ L+F G +DPRKPIS +++N+A+ ++GY     + GHGFR    + L E G+ 
Sbjct  289  EPISKHHPLVFIGRNDPRKPISKESINQAIELLGYKGR--LTGHGFRHTMSTILHEQGFN  346

Query  357  --WSRDAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDA  401
              W    +E Q++H ++N++R +Y H A  L+ RR M+QW AD++D+
Sbjct  347  SAW----IEMQLAHVDKNSIRDTYNH-ALYLDGRREMMQWYADYIDS  388

277) intB in NC_016514


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  302 bits (1130),  Expect = 3e-83, Method: Compositional matrix adjust.
 Identities = 184/407 (46%), Positives = 281/407 (70%), Gaps = 25/407 (6%)

Query  1    MALTDIKVRTAKPTDKQYKLTDGNGMHLLVHPNGSKYWRLQYRFGGKQKMLALGVYPDVS  60
            MALTDIKV+TAKP DK YKL+DG GM LL++ NGSKYWR++YRF+GK+KML++GVYPDV+
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   LadararrddarKLLANSIDPGDKKKNDKVEQEEA--RTFEQLAIEWHA-TNKKWTEEHS  117
            LADAR +R +ARKLLA + DPG+ KK++K+ Q+ +   TFE +A EWH     +W+    
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  118  RRVLKSLEDNLFPAIGKRNIAELKTRDLLAPIKAVEMSGRLEVASRLQQRTTAIMRYAVQ  177
              ++ ++E ++FP IGKR IAE+K   LL +++ +E  G LE   +++QR   + RYA+ 
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  178  SGLLDYNPAQEMAGAVASSNRQHRPALELRRTPELLQRIDSYTGRPLTRLAIELTLLVFI  237
            +G  DYNPA ++A+A+A++++ H P L     P++L+ + +YTG  +T+ A ++ +L  +
Sbjct  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV  240

Query  238  RSSELRFARWSEIDFETSMWTIPAEREAIEGIKHSQRGSKMHTPHLVPLSRQALAILKQV  297
            R+ ELRFARW +IDFET +W IPAE              KM  PH+VPLS Q + ++KQ+
Sbjct  241  RTQELRFARWEDIDFETKLWEIPAE------------VMKMKRPHIVPLSEQVIMLFKQL  288

Query  298  HKLSGDRDFVFIGDHDHRKPMSENTVNKALRVMGYDTKIEVCGHGFRTMACSSLIESGL-  356
            + +S ++ +VFIG +D RKP+S +++N+A+ ++GY  ++   GHGFR    + L E G+ 
Sbjct  289  EPISKHHPLVFIGRNDPRKPISKESINQAIELLGYKGRL--TGHGFRHTMSTILHEQGFN  346

Query  357  --WSRDAVERQMSHMERNSVRAAYIHKAEHLDERRLMLQWWADFLDA  401
              W    +E Q++H+++NS+R +Y H A  LD RR M+QW AD++D+
Sbjct  347  SAW----IEMQLAHVDKNSIRDTYNH-ALYLDGRREMMQWYADYIDS  388

278) Ent638_0463 in NC_009436


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  302 bits (1130),  Expect = 3e-83, Method: Compositional matrix adjust.
 Identities = 182/407 (45%), Positives = 282/407 (70%), Gaps = 25/407 (6%)

Query  1    MALTDIKVRTAKPTDKQYKLTDSNGMHLLVHPNGSRYWRLQYRFGGKQKMLALGVYPDVS  60
            MALTDIKV+TAKP DK YKL+D+ GM LL++ NGS+YWR++YRF+GK+KML++GVYPDV+
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   LadararrdearKLLANSIDPGDKKKNDKVEQEEA--RTFEQLAVEWHA-TNKKWSEEHS  117
            LADAR +R EARKLLA + DPG+ KK++K+ Q+ +   TFE +A EWH     +WS    
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  118  RRVLKSLEDNLFPAIGKRNIAELKTRDLLAPIKAVEMSGRLEVAARLQQRTTAIMRYAVQ  177
              ++ ++E ++FP IGKR IAE+K   LL +++ +E  G LE   +++QR   + RYA+ 
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  178  SGLIDYNPAQEMAGAVASSNRQHRPALELKRIPELLEKIDSYTGRPLTRWATELTLLIFI  237
            +G  DYNPA ++A+A+A++++ H P L  + +P++L+ + +YTG  +T+ AT++ +L  +
Sbjct  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV  240

Query  238  RSSELRFARWSEIDFETSMWTIPPEREPIPGVKHSHRGSKMRTPHLVPLSKQALEILRQI  297
            R+ ELRFARW +IDFET +W IP+E              KM+ PH+VPLS Q + +++Q+
Sbjct  241  RTQELRFARWEDIDFETKLWEIPAE------------VMKMKRPHIVPLSEQVIMLFKQL  288

Query  298  KHFCGEYELIFIGDHDPRKPMSENTVNSALRVMGYDTKVEVCGHGFRTMACSSLIESGL-  356
              +  +  L+FIG +DPRKP+S +++N A+ ++GY  +  + GHGFR    + L E G+ 
Sbjct  289  EPISKHHPLVFIGRNDPRKPISKESINQAIELLGYKGR--LTGHGFRHTMSTILHEQGFN  346

Query  357  --WSKDAVERQMSHMERNSVRAAYIHKAEHLDERKLMLQWWADFLDA  401
              W    +E Q++H+++NS+R +Y H A  LD R+ M+QW AD++D+
Sbjct  347  SAW----IEMQLAHVDKNSIRDTYNH-ALYLDGRREMMQWYADYIDS  388

279) EC042_4741 in NC_017626


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  302 bits (1130),  Expect = 3e-83, Method: Compositional matrix adjust.
 Identities = 173/406 (43%), Positives = 280/406 (69%), Gaps = 24/406 (5%)

Query  1    MALTDIKVRSAKPQEKEYTLADGDGMFLLIHPNGSKYWRFRFRFGGKQHLMAFGVYPETS  60
            MALTDIKV++AKP++K Y LADG+GM+LLI+ NGSKYWR ++RF+GK+ ++++GVYP+ +
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   LADARQKREEARKLVAAGIDPREHKRAVK-EEQTKEAITFESVAREWHAVN-KKWTEEHS  118
            LADAR+KR EARKL+AAG DP E K+  K  +Q     TFE++AREWH ++  +W+    
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  119  RRVLKSLEDNLFPAIGKRSIDSFSTRDLLVPIKVVEATGRLEVASRLQQRTNAIMRCAVQ  178
              ++ ++E ++FP IGKR+I  +    LL +++ +E  G LE   +++QR   + R A+ 
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  179  SGLIDYNPAQEMAGAVASSNRVHRPALELKRLPELLQRIDSYSGRPLTRLAVELTLLIFI  238
            +G  DYNPA ++A+A+A++++VH P L  + LP++L+ + +Y+G  +T+ A ++ +L  +
Sbjct  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV  240

Query  239  RSSELRFARWPEIDFERAMWTIPAEREAIEGVKHSERGSKMRTPHLVPLSRQALAILKQV  298
            R+ ELRFARW +IDFE  +W IPAE              KM+ PH+VPLS Q + ++KQ+
Sbjct  241  RTQELRFARWEDIDFETKLWEIPAE------------VMKMKRPHIVPLSEQVIMLFKQL  288

Query  299  HKLSGERDFVFVGDHNPCKPMSENTVNKALRVMGYDTKIEVCGHGFRTMACSSLIESGL-  357
            + +S ++ +VF+G ++P KP+S +++N+A+ ++GY  ++   GHGFR    + L E G+ 
Sbjct  289  EPISKHHPLVFIGRNDPRKPISKESINQAIELLGYKGRL--TGHGFRHTMSTILHEQGFN  346

Query  358  --WSRNAVERQMSHMERNSVRAAYIHKAQHLDERKMMLQWWADFLD  401
              W    +E Q++H+++NS+R +Y H A  LD R+ M+QW AD++D
Sbjct  347  SAW----IEMQLAHVDKNSIRDTYNH-ALYLDGRREMMQWYADYID  387

280) ROD_50201 in NC_013716


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  302 bits (1130),  Expect = 3e-83, Method: Compositional matrix adjust.
 Identities = 168/407 (42%), Positives = 271/407 (67%), Gaps = 25/407 (6%)

Query  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60
            MALTD K+++AKP DK+YKL+DG+GM+LL++ NGS+YWR++YR+ GKEK L++GVYP+V+
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   LSEARTKRDEARKLISEGIDPCEQKRAKKVVPDLQL--SFEHIARRWHA-SNKQWAQSHS  117
            L++AR KR EARKL++ G DP E K+  K+  ++ L  +FE IAR WH     +W+    
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  118  DKVLKSLETHVFPFIGNRDITTLSTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQ  177
            D ++ ++E ++FP+IG+R I+ +    LL ++R  E +   E   +++QR + V RYA+ 
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  178  SGIIRYNPALDMAGALTTIKRQHRPALDLSRLPELLSRIDGYKGQPVTRLAVMLNLLVFI  237
            +G   YNPA D+A+AL+T K+ H P L  + LP++L+ + GY G  +T+ A  + +L  +
Sbjct  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV  240

Query  238  RSSELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQAVAILAEL  297
            R+ ELR+ARW +ID++  +W IPAE              KM+ PH+VPLS Q + ++ +L
Sbjct  241  RTQELRFARWEDIDFETKLWEIPAE------------VMKMKRPHIVPLSEQVIMLFKQL  288

Query  298  QTWAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGL-  356
            +  + ++ L+F G +DPRKPIS +++N+A+ ++GY     + GHGFR    + L E G+ 
Sbjct  289  EPISKHHPLVFIGRNDPRKPISKESINQAIELLGYKGR--LTGHGFRHTMSTILHEQGFN  346

Query  357  --WSRDAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLNA  401
              W    +E Q++H ++N++R +Y H A  L+ RR M+QW AD++++
Sbjct  347  SAW----IEMQLAHVDKNSIRDTYNH-ALYLDGRREMMQWYADYIDS  388

281) Entcl_3878 in NC_014618


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  301 bits (1129),  Expect = 3e-83, Method: Compositional matrix adjust.
 Identities = 180/412 (44%), Positives = 280/412 (68%), Gaps = 24/412 (5%)

Query  1    MALTDIKVRSAKPQEKEYTLVDGDGMFLLIHPNGSKYWRFRFRFGGKQHLMAFGVYPETS  60
            MALTDIKV++AKP++K Y L DG+GM+LLI+ NGSKYWR ++RF+GK+ ++++GVYP+ +
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   LADARQKREEARKLVAAGIDPREHKRAVK-EQQAKENITFESVAREWHA-ANKKWSEEHS  118
            LADAR+KR EARKL+AAG DP E K+  K  QQ   + TFE++AREWH     +WS    
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  119  RRVLKSLEDNLFPAIGKRSIDSFSTRDLLVPIKVVEATGRLEVASRLQQRTNAIMRYAVQ  178
              ++ ++E ++FP IGKR+I  +    LL +++ +E  G LE   +++QR   + RYA+ 
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  179  SGLIDYNPAQEMAGAVASSNRVHRPALELKRLPELLHRIDSYTGRPLTRLAVELTLLIFI  238
            +G  DYNPA ++A+A+A++++VH P L  + LP++L+ + +YTG  +T+ A ++ +L  +
Sbjct  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV  240

Query  239  RSSELRFARWSEIDFERAMWTIPAEREAIEDVKHSQRGSKMRTPHLVPLSRQALAILKQV  298
            R+ ELRFARW +IDFE  +W IPAE              KM+ PH+VPLS Q + ++KQ+
Sbjct  241  RTQELRFARWEDIDFETKLWEIPAE------------VMKMKRPHIVPLSEQVIMLFKQL  288

Query  299  HKLSGERDFVFIGDHNPLKPMSENTVNKALRVMGYDTKVDVCGHGFRAMACSSLIESGL-  357
            + +S ++ +VFIG ++P KP+S +++N+A+ ++GY  ++   GHGFR    + L E G+ 
Sbjct  289  EPISKHHPLVFIGRNDPRKPISKESINQAIELLGYKGRLT--GHGFRHTMSTILHEQGFN  346

Query  358  --WSRDAVERQMSHMERNSVRAAYIHKAEHLDERRLMLQWWADLLDVNRERE  407
              W    +E Q++H+++NS+R +Y H A  LD RR M+QW AD +D    RE
Sbjct  347  SAW----IEMQLAHVDKNSIRDTYNH-ALYLDGRREMMQWYADYIDSLSSRE  393

282) ECED1_3430 in NC_011745


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  301 bits (1128),  Expect = 4e-83, Method: Compositional matrix adjust.
 Identities = 168/407 (42%), Positives = 271/407 (67%), Gaps = 25/407 (6%)

Query  1    MALTDAKIRAAKHTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60
            MALTD K+++AK  DK+YKL+DG+GM+LL++ NGS+YWR++YR+ GKEK L++GVYP+V+
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQL--SFEHIARRWHA-SNKQWAQSHS  117
            L++AR KR EARKL++ G DP E K+  K+  ++ L  +FE IAR WH     +W+    
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  118  DKVLKSLETHVFPFIGNRDITTLSTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQ  177
            D ++ ++E ++FP+IG+R I+ +    LL ++R  E +   E   +++QR + V RYA+ 
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  178  SGIIRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIDGYKGQPVTRLAVMLNLLVFI  237
            +G   YNPA D+A+AL+T K+ H P L  + LP++L+ + GY G  +T+ A  + +L  +
Sbjct  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV  240

Query  238  RSSELRYARWSEIDIDNAMWTIPAEREPLPGVKFSYRGSKMRTPHLVPLSQQAVAILAEL  297
            R+ ELR+ARW +ID++  +W IPAE              KM+ PH+VPLS+Q + ++ +L
Sbjct  241  RTQELRFARWEDIDFETKLWEIPAE------------VMKMKRPHIVPLSEQVIMLFKQL  288

Query  298  QTWAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGL-  356
            +  + ++ L+F G +DPRKPIS +++N+A+ ++GY     + GHGFR    + L E G+ 
Sbjct  289  EPISKHHPLVFIGRNDPRKPISKESINQAIELLGYKGR--LTGHGFRHTMSTILHEQGFN  346

Query  357  --WSRDAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDA  401
              W    +E Q++H ++N++R +Y H A  L+ RR M+QW AD++D+
Sbjct  347  SAW----IEMQLAHVDKNSIRDTYNH-ALYLDGRREMMQWYADYIDS  388

283) SARI_03312 in NC_010067


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  301 bits (1127),  Expect = 5e-83, Method: Compositional matrix adjust.
 Identities = 179/408 (44%), Positives = 275/408 (68%), Gaps = 27/408 (6%)

Query  1    MPLTDTAIRNAKPLDKPYKLSDAQGLYLLIKPNGSKLWHLKYRFGGKEKKLAFGAYPTVT  60
            M+LTD  ++ AKP DKPYKL+D+ G+YLLI+ NGSK W++KYRF+GKEK L++G YP VT
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   LANARKLREEARAVLSAGDDPGVKKQQEKQAKKSG--NTFEEVARRW--LAGNIRWTEHH  116
            LA+AR  R EAR +L+AG+DPG  K++EK A++ +  NTFE +AR W  L ++ RW+ + 
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKAD-RWSLRY  119

Query  117  AAKILRSLELHVFPLIGNIPVADLKTADLLIPLRVAEKKGNLETAARSQQRTTAIMRYAV  176
               I+ ++E ++FP IG+ P+A++K   LL +LR  EK+G LE   + +QR   + RYA+
Sbjct  120  RDEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAI  179

Query  177  QESLIASNPANDLTGAIAPPPKNHYPALPLEQIPQLLERLEGYSGRLLTRLAVQLNLLIF  236
              +    NPA DL++A+A P K H+P L  +++P++L+ L GY+G ++T+ A Q+ +L  
Sbjct  180  VTGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTG  239

Query  237  IRSSELRFARWTEIDLDGAMWTIPTQRESIPGVRYSERGAKMKTPHLVPLSKQAVTVLKQ  296
            +R+ ELRFARW +ID++  +W IP++              KMK PH+VPLS Q + ++KQ
Sbjct  240  VRTQELRFARWEDIDFETKLWEIPAE------------VMKMKRPHIVPLSEQVIMLFKQ  287

Query  297  LKLLSGNSELLFPGDHDPRKPMSENTINKALRVMGYDTKVDVCGHGFRTMACSALIESG-  355
            L  +S +  L+F G +DPRKP+S ++IN+A+ ++GY  +  + GHGFR    + L E G 
Sbjct  288  LEPISKHHPLVFIGRNDPRKPISKESINQAIELLGYKGR--LTGHGFRHTMSTILHEQGF  345

Query  356  --RWSKDAVERQMSHQERNNVRAAYIHKAEHLDERTQMMQWWSDYLDA  401
               W    +E Q++H ++N++R +Y H A  LD R +MMQW +DY+D+
Sbjct  346  NSAW----IEMQLAHVDKNSIRDTYNH-ALYLDGRREMMQWYADYIDS  388

284) APECO1_3534 in NC_008563


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  301 bits (1127),  Expect = 5e-83, Method: Compositional matrix adjust.
 Identities = 168/407 (42%), Positives = 272/407 (67%), Gaps = 25/407 (6%)

Query  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60
            MALTD K+++AKP DK+YKL+DG+GM+LL++ NGS+YWR++YR+ GKEK L++GVYP+V+
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   LSEARTKRDEARKLISEGIDPCEQKRVKKVVPDLQL--SFEHIARRWHA-SNKQWAQSHS  117
            L++AR KR EARKL++ G DP E K+  K+  ++ L  +FE IAR WH     +W+    
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  118  DKVLKSLETHVFPFIGNRDITTLSTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQ  177
            D ++ ++E ++FP+IG+R I+ +    LL ++R  E +   E   +++QR + V RYA+ 
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  178  SGIIRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRISSYKGQPVTQLAVMLNLLVFI  237
            +G   YNPA D+A+AL+T K+ H P L  + LP++L+ +++Y G  +T+ A  + +L  +
Sbjct  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV  240

Query  238  RSSELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQAVAILTEL  297
            R+ ELR+ARW +ID++  +W IPAE              KM+ PH+VPLS Q + ++ +L
Sbjct  241  RTQELRFARWEDIDFETKLWEIPAE------------VMKMKRPHIVPLSEQVIMLFKQL  288

Query  298  QTWAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQEVCGHGFRAMACSALIESGL-  356
            +  + ++ L+F G +DPRKPIS +++N+A+ ++GY     + GHGFR    + L E G+ 
Sbjct  289  EPISKHHPLVFIGRNDPRKPISKESINQAIELLGYKGR--LTGHGFRHTMSTILHEQGFN  346

Query  357  --WSRDAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDA  401
              W    +E Q++H ++N++R +Y H A  L+ RR M+QW AD++D+
Sbjct  347  SAW----IEMQLAHVDKNSIRDTYNH-ALYLDGRREMMQWYADYIDS  388

285) EcolC_3878 in NC_010468


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  301 bits (1127),  Expect = 5e-83, Method: Compositional matrix adjust.
 Identities = 168/407 (42%), Positives = 272/407 (67%), Gaps = 25/407 (6%)

Query  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60
            MALTD K+++AKP DK+YKL+DG+GM+LL++ NGS+YWR++YR+ GKEK L++GVYP+V+
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQL--SFEHIARRWHA-SNKQWAQSHS  117
            L++AR KR EARKL++ G DP E K+  K+  ++ L  +FE IAR WH     +W+    
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  118  DKVLKSLETHVFPFIGNRDITTLRTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQ  177
            D ++ ++E ++FP+IG+R I+ ++   LL ++R  E +   E   +++QR + V RYA+ 
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  178  SGIIRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRISSYKGQPVTQLAVTLNLLVFI  237
            +G   YNPA D+A+AL+T K+ H P L  + LP++L+ +++Y G  +T+ A  + +L  +
Sbjct  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV  240

Query  238  RSSELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQAVAILTEL  297
            R+ ELR+ARW +ID++  +W IPAE              KM+ PH+VPLS Q + ++ +L
Sbjct  241  RTQELRFARWEDIDFETKLWEIPAE------------VMKMKRPHIVPLSEQVIMLFKQL  288

Query  298  QTWAGENGLIFTGAHDPRKPISENTVNKALRGMGYDTTQDVCGHGFRAMACSALIESGL-  356
            +  + ++ L+F G +DPRKPIS +++N+A+  +GY     + GHGFR    + L E G+ 
Sbjct  289  EPISKHHPLVFIGRNDPRKPISKESINQAIELLGYKGR--LTGHGFRHTMSTILHEQGFN  346

Query  357  --WSRDAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDA  401
              W    +E Q++H ++N++R +Y H A  L+ RR M+QW AD++D+
Sbjct  347  SAW----IEMQLAHVDKNSIRDTYNH-ALYLDGRREMMQWYADYIDS  388

286) ECH74115_4272 in NC_011353


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  301 bits (1127),  Expect = 5e-83, Method: Compositional matrix adjust.
 Identities = 169/411 (42%), Positives = 274/411 (67%), Gaps = 25/411 (6%)

Query  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALVVYPEVS  60
            MALTD K+++AKP DK+YKL+DG+GM+LL++ NGS+YWR++YR+ GKEK L++ VYP+V+
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQL--SFEHIARRWHA-SNKQWAQSHS  117
            L++AR KR EARKL++ G DP E K+  K+  ++ L  +FE IAR WH     +W+    
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  118  DKVLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQ  177
            D ++ ++E ++FP+IG+R I+ ++   LL ++R  E +   E   +++QR + V RYA+ 
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  178  SGIIRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFI  237
            +G   YNPA D+A+AL+T K+ H P L  + LP++L+ +++Y G  +T+ A  + +L  +
Sbjct  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV  240

Query  238  RSSELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAEL  297
            R+ ELR+ARW +ID++  +W IPAE              KM+ PH+VPLS QV+ ++ +L
Sbjct  241  RTQELRFARWEDIDFETKLWEIPAE------------VMKMKRPHIVPLSEQVIMLFKQL  288

Query  298  QTWAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGL-  356
            +  + ++ L+F G +DPRKPIS +++N+A+ ++GY     + GHGFR    + L E G+ 
Sbjct  289  EPISKHHPLVFIGRNDPRKPISKESINQAIELLGYKGR--LTGHGFRHTMSTILHEQGFN  346

Query  357  --WSRDAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRER  405
              W    +E Q++H ++N++R +Y H A  L+ RR M+QW AD++D+   R
Sbjct  347  SAW----IEMQLAHVDKNSIRDTYNH-ALYLDGRREMMQWYADYIDSLSSR  392

287) Z4313 in NC_002655


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  301 bits (1127),  Expect = 5e-83, Method: Compositional matrix adjust.
 Identities = 169/411 (42%), Positives = 274/411 (67%), Gaps = 25/411 (6%)

Query  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALVVYPEVS  60
            MALTD K+++AKP DK+YKL+DG+GM+LL++ NGS+YWR++YR+ GKEK L++ VYP+V+
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQL--SFEHIARRWHA-SNKQWAQSHS  117
            L++AR KR EARKL++ G DP E K+  K+  ++ L  +FE IAR WH     +W+    
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  118  DKVLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQ  177
            D ++ ++E ++FP+IG+R I+ ++   LL ++R  E +   E   +++QR + V RYA+ 
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  178  SGIIRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFI  237
            +G   YNPA D+A+AL+T K+ H P L  + LP++L+ +++Y G  +T+ A  + +L  +
Sbjct  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV  240

Query  238  RSSELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAEL  297
            R+ ELR+ARW +ID++  +W IPAE              KM+ PH+VPLS QV+ ++ +L
Sbjct  241  RTQELRFARWEDIDFETKLWEIPAE------------VMKMKRPHIVPLSEQVIMLFKQL  288

Query  298  QTWAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGL-  356
            +  + ++ L+F G +DPRKPIS +++N+A+ ++GY     + GHGFR    + L E G+ 
Sbjct  289  EPISKHHPLVFIGRNDPRKPISKESINQAIELLGYKGR--LTGHGFRHTMSTILHEQGFN  346

Query  357  --WSRDAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRER  405
              W    +E Q++H ++N++R +Y H A  L+ RR M+QW AD++D+   R
Sbjct  347  SAW----IEMQLAHVDKNSIRDTYNH-ALYLDGRREMMQWYADYIDSLSSR  392

288) ECs3843 in NC_002695


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  301 bits (1127),  Expect = 5e-83, Method: Compositional matrix adjust.
 Identities = 169/411 (42%), Positives = 274/411 (67%), Gaps = 25/411 (6%)

Query  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALVVYPEVS  60
            MALTD K+++AKP DK+YKL+DG+GM+LL++ NGS+YWR++YR+ GKEK L++ VYP+V+
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQL--SFEHIARRWHA-SNKQWAQSHS  117
            L++AR KR EARKL++ G DP E K+  K+  ++ L  +FE IAR WH     +W+    
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  118  DKVLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQ  177
            D ++ ++E ++FP+IG+R I+ ++   LL ++R  E +   E   +++QR + V RYA+ 
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  178  SGIIRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFI  237
            +G   YNPA D+A+AL+T K+ H P L  + LP++L+ +++Y G  +T+ A  + +L  +
Sbjct  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV  240

Query  238  RSSELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAEL  297
            R+ ELR+ARW +ID++  +W IPAE              KM+ PH+VPLS QV+ ++ +L
Sbjct  241  RTQELRFARWEDIDFETKLWEIPAE------------VMKMKRPHIVPLSEQVIMLFKQL  288

Query  298  QTWAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGL-  356
            +  + ++ L+F G +DPRKPIS +++N+A+ ++GY     + GHGFR    + L E G+ 
Sbjct  289  EPISKHHPLVFIGRNDPRKPISKESINQAIELLGYKGR--LTGHGFRHTMSTILHEQGFN  346

Query  357  --WSRDAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRER  405
              W    +E Q++H ++N++R +Y H A  L+ RR M+QW AD++D+   R
Sbjct  347  SAW----IEMQLAHVDKNSIRDTYNH-ALYLDGRREMMQWYADYIDSLSSR  392

289) ECSP_3940 in NC_013008


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  301 bits (1127),  Expect = 5e-83, Method: Compositional matrix adjust.
 Identities = 169/411 (42%), Positives = 274/411 (67%), Gaps = 25/411 (6%)

Query  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALVVYPEVS  60
            MALTD K+++AKP DK+YKL+DG+GM+LL++ NGS+YWR++YR+ GKEK L++ VYP+V+
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQL--SFEHIARRWHA-SNKQWAQSHS  117
            L++AR KR EARKL++ G DP E K+  K+  ++ L  +FE IAR WH     +W+    
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  118  DKVLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQ  177
            D ++ ++E ++FP+IG+R I+ ++   LL ++R  E +   E   +++QR + V RYA+ 
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  178  SGIIRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFI  237
            +G   YNPA D+A+AL+T K+ H P L  + LP++L+ +++Y G  +T+ A  + +L  +
Sbjct  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV  240

Query  238  RSSELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAEL  297
            R+ ELR+ARW +ID++  +W IPAE              KM+ PH+VPLS QV+ ++ +L
Sbjct  241  RTQELRFARWEDIDFETKLWEIPAE------------VMKMKRPHIVPLSEQVIMLFKQL  288

Query  298  QTWAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGL-  356
            +  + ++ L+F G +DPRKPIS +++N+A+ ++GY     + GHGFR    + L E G+ 
Sbjct  289  EPISKHHPLVFIGRNDPRKPISKESINQAIELLGYKGR--LTGHGFRHTMSTILHEQGFN  346

Query  357  --WSRDAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRER  405
              W    +E Q++H ++N++R +Y H A  L+ RR M+QW AD++D+   R
Sbjct  347  SAW----IEMQLAHVDKNSIRDTYNH-ALYLDGRREMMQWYADYIDSLSSR  392

290) intB in NC_013941


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  301 bits (1127),  Expect = 5e-83, Method: Compositional matrix adjust.
 Identities = 169/411 (42%), Positives = 274/411 (67%), Gaps = 25/411 (6%)

Query  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALVVYPEVS  60
            MALTD K+++AKP DK+YKL+DG+GM+LL++ NGS+YWR++YR+ GKEK L++ VYP+V+
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQL--SFEHIARRWHA-SNKQWAQSHS  117
            L++AR KR EARKL++ G DP E K+  K+  ++ L  +FE IAR WH     +W+    
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  118  DKVLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQ  177
            D ++ ++E ++FP+IG+R I+ ++   LL ++R  E +   E   +++QR + V RYA+ 
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  178  SGIIRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFI  237
            +G   YNPA D+A+AL+T K+ H P L  + LP++L+ +++Y G  +T+ A  + +L  +
Sbjct  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV  240

Query  238  RSSELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAEL  297
            R+ ELR+ARW +ID++  +W IPAE              KM+ PH+VPLS QV+ ++ +L
Sbjct  241  RTQELRFARWEDIDFETKLWEIPAE------------VMKMKRPHIVPLSEQVIMLFKQL  288

Query  298  QTWAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGL-  356
            +  + ++ L+F G +DPRKPIS +++N+A+ ++GY     + GHGFR    + L E G+ 
Sbjct  289  EPISKHHPLVFIGRNDPRKPISKESINQAIELLGYKGR--LTGHGFRHTMSTILHEQGFN  346

Query  357  --WSRDAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRER  405
              W    +E Q++H ++N++R +Y H A  L+ RR M+QW AD++D+   R
Sbjct  347  SAW----IEMQLAHVDKNSIRDTYNH-ALYLDGRREMMQWYADYIDSLSSR  392

291) ECO55CA74_17295 in NC_017656


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  301 bits (1127),  Expect = 5e-83, Method: Compositional matrix adjust.
 Identities = 169/411 (42%), Positives = 274/411 (67%), Gaps = 25/411 (6%)

Query  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALVVYPEVS  60
            MALTD K+++AKP DK+YKL+DG+GM+LL++ NGS+YWR++YR+ GKEK L++ VYP+V+
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQL--SFEHIARRWHA-SNKQWAQSHS  117
            L++AR KR EARKL++ G DP E K+  K+  ++ L  +FE IAR WH     +W+    
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  118  DKVLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQ  177
            D ++ ++E ++FP+IG+R I+ ++   LL ++R  E +   E   +++QR + V RYA+ 
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  178  SGIIRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFI  237
            +G   YNPA D+A+AL+T K+ H P L  + LP++L+ +++Y G  +T+ A  + +L  +
Sbjct  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV  240

Query  238  RSSELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAEL  297
            R+ ELR+ARW +ID++  +W IPAE              KM+ PH+VPLS QV+ ++ +L
Sbjct  241  RTQELRFARWEDIDFETKLWEIPAE------------VMKMKRPHIVPLSEQVIMLFKQL  288

Query  298  QTWAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGL-  356
            +  + ++ L+F G +DPRKPIS +++N+A+ ++GY     + GHGFR    + L E G+ 
Sbjct  289  EPISKHHPLVFIGRNDPRKPISKESINQAIELLGYKGR--LTGHGFRHTMSTILHEQGFN  346

Query  357  --WSRDAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRER  405
              W    +E Q++H ++N++R +Y H A  L+ RR M+QW AD++D+   R
Sbjct  347  SAW----IEMQLAHVDKNSIRDTYNH-ALYLDGRREMMQWYADYIDSLSSR  392

292) CE10_4872 in NC_017646


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  301 bits (1127),  Expect = 5e-83, Method: Compositional matrix adjust.
 Identities = 168/407 (42%), Positives = 272/407 (67%), Gaps = 25/407 (6%)

Query  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60
            MALTD K+++AKP DK+YKL+DG+GM+LL++ NGS+YWR++YR+ GKEK L++GVYP+V+
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   LSEARTKRDEARKLISEGIDPCEQKRVKKVVPDLQL--SFEHIARRWHA-SNKQWAQSHS  117
            L++AR KR EARKL++ G DP E K+  K+  ++ L  +FE IAR WH     +W+    
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  118  DKVLKSLETHVFPFIGNRDITTLSTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQ  177
            D ++ ++E ++FP+IG+R I+ +    LL ++R  E +   E   +++QR + V RYA+ 
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  178  SGIIRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRISSYKGQPVTQLAVMLNLLVFI  237
            +G   YNPA D+A+AL+T K+ H P L  + LP++L+ +++Y G  +T+ A  + +L  +
Sbjct  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV  240

Query  238  RSSELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQAVAILTEL  297
            R+ ELR+ARW +ID++  +W IPAE              KM+ PH+VPLS Q + ++ +L
Sbjct  241  RTQELRFARWEDIDFETKLWEIPAE------------VMKMKRPHIVPLSEQVIMLFKQL  288

Query  298  QTWAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQEVCGHGFRAMACSALIESGL-  356
            +  + ++ L+F G +DPRKPIS +++N+A+ ++GY     + GHGFR    + L E G+ 
Sbjct  289  EPISKHHPLVFIGRNDPRKPISKESINQAIELLGYKGR--LTGHGFRHTMSTILHEQGFN  346

Query  357  --WSRDAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDA  401
              W    +E Q++H ++N++R +Y H A  L+ RR M+QW AD++D+
Sbjct  347  SAW----IEMQLAHVDKNSIRDTYNH-ALYLDGRREMMQWYADYIDS  388

293) int in NC_011742


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  301 bits (1127),  Expect = 5e-83, Method: Compositional matrix adjust.
 Identities = 168/407 (42%), Positives = 272/407 (67%), Gaps = 25/407 (6%)

Query  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60
            MALTD K+++AKP DK+YKL+DG+GM+LL++ NGS+YWR++YR+ GKEK L++GVYP+V+
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   LSEARTKRDEARKLISEGIDPCEQKRVKKVVPDLQL--SFEHIARRWHA-SNKQWAQSHS  117
            L++AR KR EARKL++ G DP E K+  K+  ++ L  +FE IAR WH     +W+    
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  118  DKVLKSLETHVFPFIGNRDITTLSTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQ  177
            D ++ ++E ++FP+IG+R I+ +    LL ++R  E +   E   +++QR + V RYA+ 
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  178  SGIIRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRISSYKGQPVTQLAVMLNLLVFI  237
            +G   YNPA D+A+AL+T K+ H P L  + LP++L+ +++Y G  +T+ A  + +L  +
Sbjct  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV  240

Query  238  RSSELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQAVAILTEL  297
            R+ ELR+ARW +ID++  +W IPAE              KM+ PH+VPLS Q + ++ +L
Sbjct  241  RTQELRFARWEDIDFETKLWEIPAE------------VMKMKRPHIVPLSEQVIMLFKQL  288

Query  298  QTWAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQEVCGHGFRAMACSALIESGL-  356
            +  + ++ L+F G +DPRKPIS +++N+A+ ++GY     + GHGFR    + L E G+ 
Sbjct  289  EPISKHHPLVFIGRNDPRKPISKESINQAIELLGYKGR--LTGHGFRHTMSTILHEQGFN  346

Query  357  --WSRDAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDA  401
              W    +E Q++H ++N++R +Y H A  L+ RR M+QW AD++D+
Sbjct  347  SAW----IEMQLAHVDKNSIRDTYNH-ALYLDGRREMMQWYADYIDS  388

294) CDCO157_3594 in NC_017906


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  301 bits (1127),  Expect = 5e-83, Method: Compositional matrix adjust.
 Identities = 169/411 (42%), Positives = 274/411 (67%), Gaps = 25/411 (6%)

Query  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALVVYPEVS  60
            MALTD K+++AKP DK+YKL+DG+GM+LL++ NGS+YWR++YR+ GKEK L++ VYP+V+
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQL--SFEHIARRWHA-SNKQWAQSHS  117
            L++AR KR EARKL++ G DP E K+  K+  ++ L  +FE IAR WH     +W+    
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  118  DKVLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQ  177
            D ++ ++E ++FP+IG+R I+ ++   LL ++R  E +   E   +++QR + V RYA+ 
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  178  SGIIRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFI  237
            +G   YNPA D+A+AL+T K+ H P L  + LP++L+ +++Y G  +T+ A  + +L  +
Sbjct  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV  240

Query  238  RSSELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAEL  297
            R+ ELR+ARW +ID++  +W IPAE              KM+ PH+VPLS QV+ ++ +L
Sbjct  241  RTQELRFARWEDIDFETKLWEIPAE------------VMKMKRPHIVPLSEQVIMLFKQL  288

Query  298  QTWAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGL-  356
            +  + ++ L+F G +DPRKPIS +++N+A+ ++GY     + GHGFR    + L E G+ 
Sbjct  289  EPISKHHPLVFIGRNDPRKPISKESINQAIELLGYKGR--LTGHGFRHTMSTILHEQGFN  346

Query  357  --WSRDAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRER  405
              W    +E Q++H ++N++R +Y H A  L+ RR M+QW AD++D+   R
Sbjct  347  SAW----IEMQLAHVDKNSIRDTYNH-ALYLDGRREMMQWYADYIDSLSSR  392

295) H650_18115 in NC_021500


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  301 bits (1126),  Expect = 6e-83, Method: Compositional matrix adjust.
 Identities = 176/407 (44%), Positives = 281/407 (70%), Gaps = 24/407 (5%)

Query  1    MALSDVKVRSAKPEAKAYKLTDGDGMVLLVHPNGSKYWRLRYRFGGKEKMLALGKYPEVS  60
            MAL+D+KV++AKP  K+YKL+DG+GM LL++ NGSKYWR++YRF+GKEKML++G YP+V+
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   LadararrdearKLLANGVDPTENKKAVKVEQEQE-AITFEVVARDWHA-SNQKWSASHS  118
            LADAR +R EARKLLA G DP E KK  K+ Q+     TFE +AR+WH    ++WS    
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  119  ARVLKSLEDNLFAIIGKRNIAELKTRDLLVPIKAVESSGRLEVAARLQQRTTAIMRFAVQ  178
              ++ ++E ++F+ IGKR IAE+K   LL +++ +E  G LE   +++QR   + R+A+ 
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  179  SGLIDYNPAQEIAGAVATAKRQHRAALELNRIPELLHRIDHYSGRPLTRLAVELTLLVFI  238
            +G  DYNPA ++A+A+AT+K+ H + L  N +P++L+ +  Y+G  +T+ A ++ +L  +
Sbjct  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV  240

Query  239  RSSELRFAHWSEVDFETAMWTIPGEREPLEGVKHSQRGSKMKTPHLVPLSQQALAILEKI  298
            R+ ELRFA+W ++DFET +W IP+E              KMK PH+VPLS+Q + ++ ++
Sbjct  241  RTQELRFARWEDIDFETKLWEIPAE------------VMKMKRPHIVPLSEQVIMLFKQL  288

Query  299  KSMNGNRDLIFVGDHDPRKPMSENTVNKALRVMGYDTKTEVCGHGFRTMACSSLIESGL-  357
             +++ ++ L+F+G +DPRKP+S +++N+A+ ++GY  K  + GHGFR    + L E G+ 
Sbjct  289  EPISKHHPLVFIGRNDPRKPISKESINQAIELLGY--KGRLTGHGFRHTMSTILHEQGFN  346

Query  358  --WSRDAVERQMSHQERSSVRAAYIHKAEHLGERRLMLQWWADYLDA  402
              W    +E Q++H +++S+R +Y H A  L+ RR M+QW ADY+D+
Sbjct  347  SAW----IEMQLAHVDKNSIRDTYNH-ALYLDGRREMMQWYADYIDS  388

296) int in NC_011750


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  300 bits (1123),  Expect = 1e-82, Method: Compositional matrix adjust.
 Identities = 167/407 (42%), Positives = 272/407 (67%), Gaps = 25/407 (6%)

Query  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60
            MALTD K+++AKP DK+YKL+DG+GM+LL++ NGS+YWR++YR+ GKEK L++GVYP+V+
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   LSEARTKRDEARKLISEGIDPCEQKRVKKVVPDLQL--SFEHIARRWHA-SNKQWAQSHS  117
            L++AR KR EARKL++ G DP E K+  K+  ++ L  +FE IAR WH     +W+    
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  118  DKVLKSLETHVFPFIGNRDITTLSTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQ  177
            D ++ ++E ++FP+IG+R I+ +    LL ++R  E +   E   +++QR + V RYA+ 
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  178  SGIIRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRISSYKGQPVTQLAVMLNLLVFI  237
            +G   YNPA D+A+AL+T K+ H P L  + LP++L+ +++Y G  +T+ A  + +L  +
Sbjct  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV  240

Query  238  RSSELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPISKQAVAILTEL  297
            R+ ELR+ARW +ID++  +W IPAE              KM+ PH+VP+S Q + ++ +L
Sbjct  241  RTQELRFARWEDIDFETKLWEIPAE------------VMKMKRPHIVPLSEQVIMLFKQL  288

Query  298  QTWAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQEVCGHGFRAMACSALIESGL-  356
            +  + ++ L+F G +DPRKPIS +++N+A+ ++GY     + GHGFR    + L E G+ 
Sbjct  289  EPISKHHPLVFIGRNDPRKPISKESINQAIELLGYKGR--LTGHGFRHTMSTILHEQGFN  346

Query  357  --WSRDAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDA  401
              W    +E Q++H ++N++R +Y H A  L+ RR M+QW AD++D+
Sbjct  347  SAW----IEMQLAHVDKNSIRDTYNH-ALYLDGRREMMQWYADYIDS  388

297) int in NC_011741


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  300 bits (1125),  Expect = 7e-83, Method: Compositional matrix adjust.
 Identities = 184/411 (45%), Positives = 276/411 (68%), Gaps = 24/411 (5%)

Query  1    MALTDIKVRTTKPSDKPFKLTDGQGMHLLINPNGSKYWRLQYRFDGKQKVLALGVYPMVS  60
            MALTDIKV+T+KP DKP+KL+DG GM LLIN NGSKYWR++YRF GK+K+L++GVYP V+
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   LGEARRKRDEAKKLVSDGIDPSEKKKADKIEQSEAL--TFEAVARDWHTACKRKWSDSHS  118
            L++AR KR EA+KL++ G DP+E KK +KI Q  +L  TFEA+AR+WH     +WS    
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  119  ERVLKSMEDGLFTAIGRRKISELNTRDLLAPIKAVEASGRLEVASRLQQRTTAVMRYAVQ  178
            + ++ + E ++F  IG+R I+E++   LL +++ +E  G LE   +++QR   V RYA+ 
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  179  NGLIDYNPAQEMAGAIAVAKRVHRPALPFERFSELLERIDSFKGRkltklavkltllIFI  238
             G  DYNPA ++A+A+A +K+VH P L  + ++++L+ + ++ G  +TK A ++ +L  +
Sbjct  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV  240

Query  239  RSSELRFARWSEIDFDNAMWTIPGEREPLPGVKHSHRGSKMKTPHLVPLSRQALELLKDI  298
            R+ ELRFARW +IDF+  +W IP+E              KMK PH+VPLS Q + L+K++
Sbjct  241  RTQELRFARWEDIDFETKLWEIPAE------------VMKMKRPHIVPLSEQVIMLFKQL  288

Query  299  REISGECELVFIGDHDFRKPMSENTVNKALRSMGYDTTVEVCGHGFRAMACSALIESG--  356
              IS +  LVFIG +D RKP+S +++N+A+  +GY     + GHGFR    + L E G  
Sbjct  289  EPISKHHPLVFIGRNDPRKPISKESINQAIELLGYKGR--LTGHGFRHTMSTILHEQGFN  346

Query  357  -KWSRDAVERQMSHQERNSVRAAYIHKAEHLDERRLMLQWWADYLNALKDR  406
              W    +E Q++H ++NS+R +Y H A  LD RR M+QW ADY+++L  R
Sbjct  347  SAW----IEMQLAHVDKNSIRDTYNH-ALYLDGRREMMQWYADYIDSLSSR  392

298) PAGR_g3659 in NC_017554


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  300 bits (1124),  Expect = 8e-83, Method: Compositional matrix adjust.
 Identities = 179/407 (44%), Positives = 279/407 (69%), Gaps = 24/407 (5%)

Query  1    MALSDVKVRSAKPEAKAYKLTDGDGMVLLVHPNGSKYWRLRYRFGGKEKMLALGKYPEVS  60
            MAL+D+KV++AKP  K+YKL+DG+GM LL++ NGSKYWR++YRF+GKEKML++G YP+V+
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   LadararrdearKLLANGVDPSENKKAAKVEQEQE-AITFEVVAREWHA-SNQKWSASHS  118
            LADAR +R EARKLLA G DP+E KK  K+ Q+     TFE +AREWH    ++WS    
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  119  ARVLKSLEDNLFDAIGKRNIAELKTRDLLVPIKAVESSGRLEVAARLQQRTTAIMRFAVQ  178
              ++ ++E ++F  IGKR IAE+K   LL +++ +E  G LE   +++QR   + R+A+ 
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  179  SGLIDYNPAQEIAGAVATAKRQHRAALELNRIPELLHRIDHYSGRPLTRLAVELTLLVFI  238
            +G  DYNPA ++A+A+AT+K+ H + L  N +P++L+ +  Y+G  +T+ A ++ +L  +
Sbjct  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV  240

Query  239  RSSELRFARWTEVDFETAMWTIPGEREPLEGVKHSQRGSKMKTPHLVPLSRQAVAILEKI  298
            R+ ELRFARW ++DFET +W IP+E              KMK PH+VPLS Q + ++ ++
Sbjct  241  RTQELRFARWEDIDFETKLWEIPAE------------VMKMKRPHIVPLSEQVIMLFKQL  288

Query  299  KSMNGNRELIFVGDHDPRKPMSENTVNKALRVMGYDTKTEVCGHGVRTMACSSLIESGL-  357
             +++ ++ L+F+G +DPRKP+S +++N+A+ ++GY  K  + GHG R    + L E G+ 
Sbjct  289  EPISKHHPLVFIGRNDPRKPISKESINQAIELLGY--KGRLTGHGFRHTMSTILHEQGFN  346

Query  358  --WSRDAVERQMSHQERNSVRAAYIHKAEHLDERRLMLQWWADYLDA  402
              W    +E Q++H ++NS+R +Y H A  LD RR M+QW ADY+D+
Sbjct  347  SAW----IEMQLAHVDKNSIRDTYNH-ALYLDGRREMMQWYADYIDS  388

299) ECENHK_02620 in NC_018405


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  299 bits (1122),  Expect = 1e-82, Method: Compositional matrix adjust.
 Identities = 175/407 (43%), Positives = 280/407 (69%), Gaps = 24/407 (5%)

Query  1    MALSDVKVRSAKPEAKAYKLTDGEGMVLLVHPNGSKYWRLRYRFGGKEKMLALGKYPEVS  60
            MAL+D+KV++AKP  K+YKL+DG GM LL++ NGSKYWR++YRF+GKEKML++G YP+V+
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   LadararrdearKLLANGVDPSENKKAVKVEQEQE-AITFEVVARDWHA-SNQKWSASHS  118
            LADAR +R EARKLLA G DP+E KK  K+ Q+     TFE +AR+WH    ++WS    
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  119  ARVLKSLEDNLFASIGKRNIAELKTRDLLVPIKAVESSGRLEVAARLQQRTTAIMRFAVQ  178
              ++ ++E ++F+ IGKR IAE+K   LL +++ +E  G LE   +++QR   + R+A+ 
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  179  SGLIDYNPAQEIAGAVATAKRQHRAALELNRIPELLHRIDHYSGRPLTRLAVELTLLVFI  238
            +G  DYNPA ++A+A+AT+K+ H + L  N +P++L+ +  Y+G  +T+ A ++ +L  +
Sbjct  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV  240

Query  239  RSSELRFARWSEVDFETAMWTIPGERELLEGVKHSQRGSKMRTPHLIPLSRQALTILEKI  298
            R+ ELRFARW ++DFET +W IP+E              KM+ PH++PLS Q + ++ ++
Sbjct  241  RTQELRFARWEDIDFETKLWEIPAE------------VMKMKRPHIVPLSEQVIMLFKQL  288

Query  299  KSMNGNRELIFVGDHDPRKPMSENTVNKALRVMGYDTKTEVCGHGFRTMACSSLIESGL-  357
             +++ ++ L+F+G +DPRKP+S +++N+A+ ++GY  K  + GHGFR    + L E G+ 
Sbjct  289  EPISKHHPLVFIGRNDPRKPISKESINQAIELLGY--KGRLTGHGFRHTMSTILHEQGFN  346

Query  358  --WSRDAVERQMSHQERSSVRAAYIHKAEHLGERRLMLQWWADYLDA  402
              W    +E Q++H +++S+R +Y H A  L+ RR M+QW ADY+D+
Sbjct  347  SAW----IEMQLAHVDKNSIRDTYNH-ALYLDGRREMMQWYADYIDS  388

300) H650_18245 in NC_021500


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  299 bits (1122),  Expect = 1e-82, Method: Compositional matrix adjust.
 Identities = 172/406 (43%), Positives = 274/406 (68%), Gaps = 24/406 (5%)

Query  1    MALTDTKVRSAKPEVKEYSLVDGDGMFLLIHPNGSIYWRFRFRFGGKQHLMAFGVYPETS  60
            MALTD KV++AKP  K Y L DG+GM+LLI+ NGS YWR ++RF+GK+ ++++GVYP+ +
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   LADARQKREEARKLVAAGVDPREHKRAVKEEQAKEV-ITFESVARDWHA-SNQKWSESHS  118
            LADAR+KR EARKL+AAG DP E K+  K  Q   +  TFE++AR+WH    ++WS    
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  119  GRVLKSLEDNLFDAIGKRNIAELKTRDLLIPIKAVEMSGRLEVAARLQQRTTAIMRFAVQ  178
            + ++ ++E ++F  IGKR IAE+K   LL +++ +E  G LE   +++QR   + R+A+ 
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  179  SGLIDYNPAQEIAGAVATAKRQHRAALELNRIPELLHRIDTYTGRPLTRLAVELTLLVFI  238
            +G  DYNPA ++A+A+AT+K+ H + L  N +P++L+ +  YTG  +T+ A ++ +L  +
Sbjct  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV  240

Query  239  RSSELRFARWSEVDFEIAMWTIPGEREPLEGVKHSHRGSKMRTPHLVPLSSQALTILEKI  298
            R+ ELRFARW ++DFE  +W IP+E              KM+ PH+VPLS Q + ++ ++
Sbjct  241  RTQELRFARWEDIDFETKLWEIPAE------------VMKMKRPHIVPLSEQVIMLFKQL  288

Query  299  KSMSGNRELIFVGDHDPRKPMSENTVNKALRVMGYDTKVEVCGHGFRTMACSSLIESGL-  357
             ++S ++ L+F+G +DPRKP+S +++N+A+ ++GY  +  + GHGFR    + L E G+ 
Sbjct  289  EPISKHHPLVFIGRNDPRKPISKESINQAIELLGYKGR--LTGHGFRHTMSTILHEQGFN  346

Query  358  --WSKDAVERQMSHQERNSVRAAYIHKAEHLGERRLMVQWWADYLD  401
              W    +E Q++H ++NS+R +Y H A  L+ RR M+QW ADY+D
Sbjct  347  SAW----IEMQLAHVDKNSIRDTYNH-ALYLDGRREMMQWYADYID  387

301) int in NC_011750


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  299 bits (1122),  Expect = 1e-82, Method: Compositional matrix adjust.
 Identities = 168/407 (42%), Positives = 272/407 (67%), Gaps = 25/407 (6%)

Query  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60
            MALTD K+++AKP DK+YKL+DG+GM+LL++ NGS+YWR++YR+ GKEK L++GVYP+V+
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   LSEARTKRDEARKLISEGIDPCEQKRVKKVVPDLQL--SFEHIARRWHA-SNKQWAQSHS  117
            L++AR KR EARKL++ G DP E K+  K+  ++ L  +FE IAR WH     +W+    
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  118  DKVLKSLETHVFPFIGNRDITTLSTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQ  177
            D ++ ++E ++FP+IG+R I+ +    LL ++R  E +   E   +++QR + V RYA+ 
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  178  SGIIRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRISSYKGQPVTQLAVMLNLLVFI  237
            +G   YNPA D+A+AL+T K+ H P L  + LP++L+ +++Y G  +T+ A  + +L  +
Sbjct  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV  240

Query  238  RSSELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQAVAILTEL  297
            R+ ELR+ARW +ID++  +W IPAE              KM+ PH+VPLS Q + ++ +L
Sbjct  241  RTQELRFARWEDIDFETKLWEIPAE------------VMKMKRPHIVPLSEQVIMLFKQL  288

Query  298  QTWAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQEVCGHGFRAMACSALIESGL-  356
            +  + ++ L+F G +DPRKPIS +++N+A+ ++GY     + GHGFR    + L E G+ 
Sbjct  289  EPISKHHPLVFIGRNDPRKPISKESINQAIELLGYKGR--LTGHGFRHTMSTILHEQGFN  346

Query  357  --WSRDAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWRADFLDA  401
              W    +E Q++H ++N++R +Y H A  L+ RR M+QW AD++D+
Sbjct  347  SAW----IEMQLAHVDKNSIRDTYNH-ALYLDGRREMMQWYADYIDS  388

302) EAM_3037 in NC_013971


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  299 bits (1119),  Expect = 2e-82, Method: Compositional matrix adjust.
 Identities = 181/407 (45%), Positives = 279/407 (69%), Gaps = 25/407 (6%)

Query  1    MALTDIKVRTAKPTDKQYKLTDGNGMHLLVHPNGSRYWRLQYRFGGKQKMLALGVYPDVS  60
            MALTDIKV+TAKP DK YKL+DG GM LL++ NGS+YWR++YRF+GK+KML++GVYPDV+
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   LadararrdearKLLANSIDPGDKKKNDKVEQEEA--RTFEELAVEWHA-TNKKWSEEHS  117
            LADAR +R EARKLLA + DPG+ KK++K+ Q+ +   TFE +A EWH     +WS    
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  118  RRVLKSLEDNLFPAIGKRNIAELKTRDLLAPIKAVEMSGRLEVASRLQQRTTAIMRYAVQ  177
              ++ ++E ++FP IGKR IAE+K   LL +++ +E  G LE   +++QR   + RYA+ 
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  178  SGLLDYNPAQEMVGAVASSNRQHRPALELKRTPELLQRIDSYTGRPLTCLAVELTLLVFI  237
            +G  DYNPA ++ +A+A++++ H P L  +  P++L+ + +YTG  +T  A ++ +L  +
Sbjct  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV  240

Query  238  RSSELRFARWSEIDFETSMWMIPAEREAIEGVKHSQRGSKMRTPHLVPLSRQALAILEQI  297
            R+ ELRFARW +IDFET +W IPAE              KM+ PH+VPLS Q + ++ Q+
Sbjct  241  RTQELRFARWEDIDFETKLWEIPAE------------VMKMKRPHIVPLSEQVIMLFKQL  288

Query  298  KTFSGDHELIFIGDHNPRKPMSENTVNKSLRVMGYDTQIEVCGHGFRTMACSSLIESGL-  356
              +S +H L+FIG ++PRKP+S +++N+++ ++GY  ++   GHGFR    + L E G+ 
Sbjct  289  EPISKHHPLVFIGRNDPRKPISKESINQAIELLGYKGRL--TGHGFRHTMSTILHEQGFN  346

Query  357  --WSRDAVKRQMSHMERNSVRAAYIHKAEHLDERKLMLQWWADFLDA  401
              W    +  Q++H+++NS+R +Y H A  LD R+ M+QW AD++D+
Sbjct  347  SAW----IEMQLAHVDKNSIRDTYNH-ALYLDGRREMMQWYADYIDS  388

303) intB in NC_013961


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  299 bits (1119),  Expect = 2e-82, Method: Compositional matrix adjust.
 Identities = 181/407 (45%), Positives = 279/407 (69%), Gaps = 25/407 (6%)

Query  1    MALTDIKVRTAKPTDKQYKLTDGNGMHLLVHPNGSRYWRLQYRFGGKQKMLALGVYPDVS  60
            MALTDIKV+TAKP DK YKL+DG GM LL++ NGS+YWR++YRF+GK+KML++GVYPDV+
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   LadararrdearKLLANSIDPGDKKKNDKVEQEEA--RTFEELAVEWHA-TNKKWSEEHS  117
            LADAR +R EARKLLA + DPG+ KK++K+ Q+ +   TFE +A EWH     +WS    
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  118  RRVLKSLEDNLFPAIGKRNIAELKTRDLLAPIKAVEMSGRLEVASRLQQRTTAIMRYAVQ  177
              ++ ++E ++FP IGKR IAE+K   LL +++ +E  G LE   +++QR   + RYA+ 
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  178  SGLLDYNPAQEMVGAVASSNRQHRPALELKRTPELLQRIDSYTGRPLTCLAVELTLLVFI  237
            +G  DYNPA ++ +A+A++++ H P L  +  P++L+ + +YTG  +T  A ++ +L  +
Sbjct  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV  240

Query  238  RSSELRFARWSEIDFETSMWMIPAEREAIEGVKHSQRGSKMRTPHLVPLSRQALAILEQI  297
            R+ ELRFARW +IDFET +W IPAE              KM+ PH+VPLS Q + ++ Q+
Sbjct  241  RTQELRFARWEDIDFETKLWEIPAE------------VMKMKRPHIVPLSEQVIMLFKQL  288

Query  298  KTFSGDHELIFIGDHNPRKPMSENTVNKSLRVMGYDTQIEVCGHGFRTMACSSLIESGL-  356
              +S +H L+FIG ++PRKP+S +++N+++ ++GY  ++   GHGFR    + L E G+ 
Sbjct  289  EPISKHHPLVFIGRNDPRKPISKESINQAIELLGYKGRL--TGHGFRHTMSTILHEQGFN  346

Query  357  --WSRDAVKRQMSHMERNSVRAAYIHKAEHLDERKLMLQWWADFLDA  401
              W    +  Q++H+++NS+R +Y H A  LD R+ M+QW AD++D+
Sbjct  347  SAW----IEMQLAHVDKNSIRDTYNH-ALYLDGRREMMQWYADYIDS  388

304) ECO55CA74_24440 in NC_017656


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  299 bits (1120),  Expect = 2e-82, Method: Compositional matrix adjust.
 Identities = 182/412 (45%), Positives = 277/412 (68%), Gaps = 24/412 (5%)

Query  1    MALTDIKVRTTKPSDKPFKLTDGQGMHLLINPNGSKYWRLQYRFDGKQKVLALGVYPMVS  60
            MALTDIKV+T+KP DKP+KL+DG GM LLIN NGSKYWR++YRF GK+K+L++GVYP V+
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   LGEARRKRDEAKKLVSDGIDPSEKKKADKIEQSEAL--TFESVARDWHKACKRKWSDSHS  118
            L++AR KR EA+KL++ G DP+E KK +KI Q  +L  TFE++AR+WH+    +WS    
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  119  ERVLKSMEDGLFTAIGKRKISELNTRDLLAPIKAVEASGRLEVASRLQQRTTAVMRYAVQ  178
            + ++ + E ++F  IGKR I+E++   LL +++ +E  G LE   +++QR   V RYA+ 
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  179  NGLIDYNPAQEMAGAIAVAKRVHRPALPFERFSELLARIDSFKGRkltklavkltllIFI  238
             G  DYNPA ++A+A+A +K+VH P L  + ++++L  + ++ G  +TK A ++ +L  +
Sbjct  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV  240

Query  239  RSSELRFARWSEIDFENAMWTIPGEREPLPGVKHSHRGSKMRTPHLVPLSCQALAVLTKI  298
            R+ ELRFARW +IDFE  +W IP+E              KM+ PH+VPLS Q + ++ ++
Sbjct  241  RTQELRFARWEDIDFETKLWEIPAE------------VMKMKRPHIVPLSEQVIMLFKQL  288

Query  299  KEISGDHELVFIGDHNFRKPMSENTVNKALRAMGYDTTVEVCGHGFRAMACSALIESGL-  357
              IS +H LVFIG ++ RKP+S +++N+A+  +GY     + GHGFR    + L E G+ 
Sbjct  289  EPISKHHPLVFIGRNDPRKPISKESINQAIELLGYKGR--LTGHGFRHTMSTILHEQGFN  346

Query  358  --WSKDAVERQMSHQERNSVRAAYIHKAEHLDERKLMLQWWADYLDLLRIRQ  407
              W    +E Q++H ++NS+R +Y H A  LD R+ M+QW ADY+D L  R+
Sbjct  347  SAW----IEMQLAHVDKNSIRDTYNH-ALYLDGRREMMQWYADYIDSLSSRE  393

305) EAE_09085 in NC_015663


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  299 bits (1119),  Expect = 2e-82, Method: Compositional matrix adjust.
 Identities = 171/407 (43%), Positives = 274/407 (68%), Gaps = 25/407 (6%)

Query  1    MALTDAKIRAAKPDEKPYKLADSGNMFLLVHPNGSRYWRLRYRFLGKEKTLALGVYPEVS  60
            MALTD K+++AKP +KPYKLAD+G M+LL++ NGS+YWR++YRF GKEK L++GVYP+V+
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   LSEAREKRDTARKLIAEGTDPCEHKRIKKSVPETA--QTFEGIARQWHK-SNKKWSDSHS  117
            L++AREKR  ARKL+A G DP E K+  K   + +  +TFE+IAR+WH+    +WS    
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  118  EKILKSLETHVFPFIGSRDITTLRTPDLLVPVkaaeakeiyeiaaRLQQRITAIMRYAAQ  177
            + I+ ++E ++FP+IG R I+ ++   LL +++  E +   E   +++QR   + RYA  
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  178  SGIITYNPAVDMAGALTTVKRQHRPALALNRISELLERLDAYRGQPLTRLATKLTLLIFI  237
            +G   YNPA D+A+AL+T K+ H P L+ N ++++L+ L +Y G  +T+ AT++ +L  +
Sbjct  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV  240

Query  238  RSSELRFARWSEIDFKKAMWTIPPERKPIEGVKYSHRGSKMRTEHLVPLSTQALDILQQI  297
            R+ ELRFARW +IDF   +W IP+E              KM+  H+VPLS Q + +++Q+
Sbjct  241  RTQELRFARWEDIDFETKLWEIPAE------------VMKMKRPHIVPLSEQVIMLFKQL  288

Query  298  HTISGEYELIFTGDHNPWKPMSENTVNNALRLMGYDTKIDVCGHGFRAMACSSLIESGL-  356
            + IS +  L+F G ++P+KP+S +++N+A+ L+GY  ++   GHGFR    + L E G+ 
Sbjct  289  EPISKHHPLVFIGRNDPRKPISKESINQAIELLGYKGRL--TGHGFRHTMSTILHEQGFN  346

Query  357  --WSRDAVERQMSHQERNGVRAAYIHKAEFLDERRLMLQWWADFLDA  401
              W    +E Q++H ++N++R +Y H A +LD RR M+QW AD++D+
Sbjct  347  SAW----IEMQLAHVDKNSIRDTYNH-ALYLDGRREMMQWYADYIDS  388

306) EBL_c34780 in NC_017910


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  299 bits (1120),  Expect = 2e-82, Method: Compositional matrix adjust.
 Identities = 174/407 (43%), Positives = 279/407 (69%), Gaps = 24/407 (5%)

Query  1    MALSDVKVRSAKPEAKAYKLTDGDGMVLLVHPNGSKYWRLRYRFGGKEKMLALGKYPEVS  60
            MAL+D+KV++AKP  K+YKL+DG+GM LL++ NGSKYWR++YRF+GKEKML++G YP+V+
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   LadararrdearKLLANGVDPSENKKAVKVEQEQE-AITFEVVARDWHA-SNQKWSTSHS  118
            LADAR +R EARKLLA G DP+E KK  K+ Q+     TFE +AR+WH    ++WS    
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  119  ARVLKSLEDNLFASVGKRNIKDIGTRDLLVPIKAVEKSGRLEVAARLQQRTTAIMRFAVQ  178
              ++ ++E ++F+ +GKR I +I    LL +++ +EK G LE   +++QR   + R+A+ 
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  179  NGLIDYNPAQEIAGAIATAKRKHRAALDLNRIPELLHRIDNYTGRPLTRLAVDLTLLVFI  238
             G  DYNPA ++A+A+AT+K+ H + L  N +P++L+ +  YTG  +T+ A ++ +L  +
Sbjct  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV  240

Query  239  RSSELRFARWTEVDFETAMWTIPGEREPLEGVKHSQRGSKMRTPHLVPLSRQALAILEKI  298
            R+ ELRFARW ++DFET +W IP+E              KM+ PH+VPLS Q + ++ ++
Sbjct  241  RTQELRFARWEDIDFETKLWEIPAE------------VMKMKRPHIVPLSEQVIMLFKQL  288

Query  299  KSMNGNRELIFVGDHDPRKPMSENTVNKALRVMGYDTKKEVCGHGFRTMACSSLIESGL-  357
             +++ ++ L+F+G +DPRKP+S +++N+A+ ++GY  +  + GHGFR    + L E G+ 
Sbjct  289  EPISKHHPLVFIGRNDPRKPISKESINQAIELLGYKGR--LTGHGFRHTMSTILHEQGFN  346

Query  358  --WSRDAVERQMSHQERSSVRAAYIHKAEHLGERRLMLQWWADYLDA  402
              W    +E Q++H +++S+R +Y H A  L+ RR M+QW ADY+D+
Sbjct  347  SAW----IEMQLAHVDKNSIRDTYNH-ALYLDGRREMMQWYADYIDS  388

307) CFSAN002050_05850 in NC_021818


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  299 bits (1119),  Expect = 2e-82, Method: Compositional matrix adjust.
 Identities = 172/407 (43%), Positives = 275/407 (68%), Gaps = 24/407 (5%)

Query  1    MALTDTKVRSAKPEDNANPLSDGDGLFLLVHANGSKYWRFRFRFGGKQHVMAFGVYPEVS  60
            MALTD KV++AKP D++  L+DG+G++LL+++NGSKYWR ++RF+GK+ ++++GVYP+V+
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   LADARKKREEARKLVAAGIDPRAHKRAVKEEQAKEI-ITFEKVARDWLA-TNQKWSEDHA  118
            LADAR KR EARKL+AAG DP   K+  K  Q   +  TFE +AR+W     ++WS    
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  119  ERVKKSLEDNVFPAIGTRNIAELSTRDLLLPIKAVETSGRLEVASRLQQRTTAIMRYAVQ  178
            + +  ++E ++FP IG R IAE+    LL +++ +E  G LE   +++QR   + RYA+ 
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  179  SGLIDYNPAQEMAGAVASGNRKHRPALALKRIPELLQKIDGYTGRPLTRWATELTLLIFI  238
            +G  DYNPA ++A+A+A+ ++ H P L+ + +P++L+ + GYTG  +T+ AT++ +L  +
Sbjct  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV  240

Query  239  RSSELRFARWSEIDFETSMWTIPPEREPIPDVKHSHRGSKMHTPHLVPLSKQALAILKQI  298
            R+ ELRFARW +IDFET +W IP+E              KM  PH+VPLS Q + ++KQ+
Sbjct  241  RTQELRFARWEDIDFETKLWEIPAE------------VMKMKRPHIVPLSEQVIMLFKQL  288

Query  299  KQFCGKHELIFIGDHDPRKPMSENTVNSALRVMGYDTKVEVCGHGFRTMACSSLIESGL-  357
              +   H L+FIG +DPRKP+S +++N A+ ++GY  +  + GHGFR    + L E G+ 
Sbjct  289  EPISKHHPLVFIGRNDPRKPISKESINQAIELLGYKGR--LTGHGFRHTMSTILHEQGFN  346

Query  358  --WSKDAVERQMSHMERNSVRAAYIHKAEFIDERKLMLQWWADFLDA  402
              W    +E Q++H+++NS+R +Y H A ++D R+ M+QW AD++D+
Sbjct  347  SAW----IEMQLAHVDKNSIRDTYNH-ALYLDGRREMMQWYADYIDS  388

308) ETAF_2789 in NC_017309


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  298 bits (1116),  Expect = 3e-82, Method: Compositional matrix adjust.
 Identities = 184/412 (45%), Positives = 277/412 (68%), Gaps = 24/412 (5%)

Query  1    MALTDIKVRTTKPSDKPFKLTDGQGMHLLINPNGSKYWRLQYRFGGKQKVLALGVYPMVS  60
            MALTDIKV+T+KP DKP+KL+DG GM LLIN NGSKYWR++YRF+GK+K+L++GVYP V+
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   LGEARRKRDEAKKLVFDGIDPSEKKKADKIEQSEAL--TFEAVARDWHTACKRKWSDSHS  118
            L++AR KR EA+KL+  G DP+E KK +KI Q  +L  TFEA+AR+WH     +WS    
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  119  ERVLKSMEDGLFTAIGKRKISELNTRDLLAPIKAVEASGRLEVASRLQQRTTAVMRYAVQ  178
            + ++ + E ++F  IGKR I+E++   LL +++ +E  G LE   +++QR   V RYA+ 
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  179  NGLIDYNPAQEMAGAIAVAKRVHRPALPFERFSELLERIDSFKGRkltklavkltllIFI  238
             G  DYNPA ++A+A+A +K+VH P L  + ++++L+ + ++ G  +TK A ++ +L  +
Sbjct  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV  240

Query  239  RSSELRFARWSEIDFDNAMWTIPAEREPLPGVKHSHRGSKMRTPHLVPLSCQALAVLTEI  298
            R+ ELRFARW +IDF+  +W IPAE              KM+ PH+VPLS Q + ++ ++
Sbjct  241  RTQELRFARWEDIDFETKLWEIPAE------------VMKMKRPHIVPLSEQVIMLFKQL  288

Query  299  KEISGDHELVFIGDHDFRKPMSENTVNKALRSMGYDTTVEVCGHGFRAMACSALIESGL-  357
              IS +H LVFIG +D RKP+S +++N+A+  +GY     + GHGFR    + L E G+ 
Sbjct  289  EPISKHHPLVFIGRNDPRKPISKESINQAIELLGYKGR--LTGHGFRHTMSTILHEQGFN  346

Query  358  --WSKDAVERQMSHQERNSVRAAYIHKAEHLDERKLMLQWWADYLDLLRIRQ  407
              W    +E Q++H ++NS+R +Y H A  LD R+ M+QW ADY+D L  R+
Sbjct  347  SAW----IEMQLAHVDKNSIRDTYNH-ALYLDGRREMMQWYADYIDSLSSRE  393

309) SbBS512_E4814 in NC_010658


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  298 bits (1117),  Expect = 3e-82, Method: Compositional matrix adjust.
 Identities = 176/407 (44%), Positives = 272/407 (67%), Gaps = 24/407 (5%)

Query  1    MALTDTKVRSAKPEEKEYSLVDGDGMSLLVKPGGSKYWRFRFRFGGKQHLMAFGVYPDVS  60
            MALTD KV++AKP +K Y L DG+GM LL++  GSKYWR ++RF+GK+ ++++GVYPDV+
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   LADARKKREEARKLVAAGIDPREHKRAVKEEQAKEI-ITFEKVAREW-LVTNQKWSEEHA  118
            LADAR KR EARKL+AAG DP E K+  K  Q   +  TFE +AREW  +  ++WS    
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  119  NRVKKSLEDNIFPAIGSHNIAELGTRDLLIPIKAVEKSGRLEVASRLQQRTTAIMRYAVQ  178
            + +  ++E +IFP IG + IAE+    LL +++ +EK G LE   +++QR   + RYA+ 
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  179  SGLIDYNPAQEMAGAVASCNRQHRPALELKRIPELLQKIDEYTGRPLTRWATELTLLIFI  238
            +G  DYNPA ++A+A+A+ ++ H P L  + +P++L+ +  YTG  +T+ AT++ +L  +
Sbjct  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV  240

Query  239  RSSELRFARWSEIDFETSMWTIPPEREPIPGVKHSQRGAKMRTPHLVPLSKQALAILKQI  298
            R+ ELRFARW +IDFET +W IP+E              KM+ PH+VPLS Q + ++KQ+
Sbjct  241  RTQELRFARWEDIDFETKLWEIPAE------------VMKMKRPHIVPLSEQVIMLFKQL  288

Query  299  KQFCGEHELIFIGDHDPSKPMSENTVNSALRVMGYDTKVEVCGHGFRTMACSSLIESGL-  357
              +  +H L+FIG +DP KP+S +++N A+ ++GY  +  + GHGFR    + L E G+ 
Sbjct  289  EPISKHHPLVFIGRNDPRKPISKESINQAIELLGYKGR--LTGHGFRHTMSTILHEQGFN  346

Query  358  --WSKDAVERQMSHMERNSVRAAYIHKAEHLDERKLMLQWWADFLDA  402
              W    +E Q++H+++NS+R +Y H A  LD R+ M+QW AD++D+
Sbjct  347  SAW----IEMQLAHVDKNSIRDTYNH-ALYLDGRREMMQWYADYIDS  388

310) ETAC_14745 in NC_020796


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  298 bits (1115),  Expect = 4e-82, Method: Compositional matrix adjust.
 Identities = 181/412 (44%), Positives = 277/412 (68%), Gaps = 24/412 (5%)

Query  1    MALTDIKVRTTKPSDKPFKLTDGQGMHLLVNPNGSKYWRLQYRFNGKQKILALGVYPTVS  60
            MALTDIKV+T+KP DKP+KL+DG GM LL+N NGSKYWR++YRF GK+K+L++GVYP V+
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   LGEARRKRDEAKKLVSDGIDPSEKKKADKIEQSEAL--TFESVARDWHTACKRKWSDSHS  118
            L++AR KR EA+KL++ G DP+E KK +KI Q  +L  TFE++AR+WH     +WS    
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  119  ERVLKSMEDGLFTAIGRRKISELNTRDLLAPIKAVEASGRLEVAARLQQRTTAVMRYAVQ  178
            + ++ + E ++F  IG+R I+E++   LL +++ +E  G LE   +++QR   V RYA+ 
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  179  NGLIDYNPAQEMAGAIAVAKRVHRPALPFERFSELLERIDSFKGRkltklavkltllIFI  238
             G  DYNPA ++A+A+A +K+VH P L  + ++++L+ + ++ G  +TK A ++ +L  +
Sbjct  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV  240

Query  239  RSSELRFARWSEIDFDNAMWTIPGEREPLPGVKHSHRGSKMKTPHLVPLSRQALELLKAI  298
            R+ ELRFARW +IDF+  +W IP+E              KMK PH+VPLS Q + L+K +
Sbjct  241  RTQELRFARWEDIDFETKLWEIPAE------------VMKMKRPHIVPLSEQVIMLFKQL  288

Query  299  REISGECDLVFIGDHDFRKPMSENTVNKALRSMGYDTTAEVCGHGFRAMACSALIESGL-  357
              IS +  LVFIG +D RKP+S +++N+A+  +GY   + + GHGFR    + L E G+ 
Sbjct  289  EPISKHHPLVFIGRNDPRKPISKESINQAIELLGY--KGRLTGHGFRHTMSTILHEQGFN  346

Query  358  --WSKDAVERQMSHQERNSVRAAYIHKAEHIDERKLMLQWWADYLDLLRIRQ  407
              W    +E Q++H ++NS+R +Y H A  +D R+ M+QW ADY+D L  R+
Sbjct  347  SAW----IEMQLAHVDKNSIRDTYNH-ALYLDGRREMMQWYADYIDSLSSRE  393

311) CFSAN002050_22445 in NC_021818


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  298 bits (1115),  Expect = 4e-82, Method: Compositional matrix adjust.
 Identities = 177/408 (44%), Positives = 272/408 (67%), Gaps = 27/408 (6%)

Query  1    MPLTDTAIRNAKPLDKPYKLSDAQGLYLLIKPNGSKLWQLKYRFGGKEKKLAFGAYPTVT  60
            M+LTD  ++ AKP DKPYKL+D+ G+YLLI+ NGSK W++KYRF+GKEK L++G YP VT
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   LANARKLREEARAVLSTGDDPGVKKQQEKQAKKSG--NTFEEVARKW--LAGNIRWTEAH  116
            LA+AR  R EAR +L++G+DPG  K++EK A++ +  NTFE +AR W  L ++ RW+   
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKAD-RWSLRY  119

Query  117  AAKALRSLELHVFPLIGKIPVTDLKTADLLIPLRVAERKGNLETAARIQQRTTAIMRYAV  176
                + ++E ++FP IGK P++++K   LL +LR  E++G LE   +++QR   + RYA+
Sbjct  120  RDEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAI  179

Query  177  QESLIASNPANDLTGAIAPPPKNHYPALPLEKMPELLERLEGYSGRLLTRLAVQLNLLIF  236
              +    NPA DL++A+A P K H+P L  + +P++L+ L GY+G ++T+ A Q+ +L  
Sbjct  180  VTGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTG  239

Query  237  IRSSELRFARWAEIDLDGAMWTIPAGREPIPGVRYSERGAKMKTPHLVPLSKQAVTVLKQ  296
            +R+ ELRFARW +ID++  +W IPA               KMK PH+VPLS Q + ++KQ
Sbjct  240  VRTQELRFARWEDIDFETKLWEIPAE------------VMKMKRPHIVPLSEQVIMLFKQ  287

Query  297  LKLLSGNSELLFPGDHDPRKPMSENTINKALRVMGYDTKVDVCGHGFRTMACSALIESG-  355
            L  +S +  L+F G +DPRKP+S ++IN+A+ ++GY  +  + GHGFR    + L E G 
Sbjct  288  LEPISKHHPLVFIGRNDPRKPISKESINQAIELLGYKGR--LTGHGFRHTMSTILHEQGF  345

Query  356  --RWSKDAVERQMSHQERNNVRAAYIHKAEHLDERTQMMQWWSDYLDA  401
               W    +E Q++H ++N++R +Y H A  LD R +MMQW +DY+D+
Sbjct  346  NSAW----IEMQLAHVDKNSIRDTYNH-ALYLDGRREMMQWYADYIDS  388

312) ECO103_5061 in NC_013353


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  297 bits (1114),  Expect = 5e-82, Method: Compositional matrix adjust.
 Identities = 183/407 (45%), Positives = 281/407 (70%), Gaps = 25/407 (6%)

Query  1    MALTDIKVRTAKPTDKQYKLTDGNGMHLLVHPNGSKYWRLQYRFGGKQKMLALGVYPDVS  60
            MALTDIKV+TAKP DK YKL+DG GM LL++ NGSKYWR++YRF+GK+KML++GVYPDV+
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   LadararrddarKLLANGIDPGDKKKNDKIEQEEA--RTFEQLAIEWHA-TNKKWSEEHS  117
            LADAR +R +ARKLLA G DPG+ KK++KI Q+ +   TFE +A EWH     +WS    
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  118  RRVLKSLEDNLFPAIGKRNIADLKTRDLLAPIKAVELSGRLEVASRLQQRTTAIMRYAVQ  177
              ++ ++E ++FP IGKR IA++K   LL +++ +E  G LE   +++QR   + RYA+ 
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  178  SGLLDYNPAQEMVGAVASNNRQHRPALQLKLIPELLRRIDSYTGRPLTRLAVELTLLVFI  237
            +G  DYNPA ++ +A+A+ ++ H P L  + +P++L  + +YTG  +T+ A ++ +L  +
Sbjct  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV  240

Query  238  RSSELRFARWSEIDFETSMWTIPAEREAIEGVKHSQRGSKMRTPHLVPLSHQALAILKDV  297
            R+ ELRFARW +IDFET +W IPAE              KM+ PH+VPLS+Q + ++K++
Sbjct  241  RTQELRFARWEDIDFETKLWEIPAE------------VMKMKRPHIVPLSEQVIMLFKQL  288

Query  298  YKLSGDRDFVFIGDHDHRKPMSENTVNKALRVMGYDTKVEVCGHGFRTMACSSLIESGL-  356
              +S ++ +VFIG +D RKP+S +++N+A+ ++GY  +  + GHGFR    + L E G+ 
Sbjct  289  EPISKHHPLVFIGRNDPRKPISKESINQAIELLGYKGR--LTGHGFRHTMSTILHEQGFN  346

Query  357  --WSRDAVERQMSHMERSSVRAAYIHKAEHLDERRLMLQWWADFLDA  401
              W    +E Q++H++++S+R +Y H A  LD RR M+QW AD++D+
Sbjct  347  SAW----IEMQLAHVDKNSIRDTYNH-ALYLDGRREMMQWYADYIDS  388

313) A225_0566 in NC_018106


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  297 bits (1114),  Expect = 5e-82, Method: Compositional matrix adjust.
 Identities = 174/407 (43%), Positives = 272/407 (67%), Gaps = 24/407 (5%)

Query  1    MALTDTKVRSAKPEEKEYSLVDGDGMSLLVKPNGSKYWRFRFRFGGKQHLMAFGVYPEIS  60
            MALTD KV++AKP +K Y L DG+GM LL++ NGSKYWR ++RF+GK+ ++++GVYP+++
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   LANARKKREEARKLVAAGIDPREHKRALKEEQAKEI-ITFEKVAREWLA-TNQKWSEDHA  118
            LA+AR KR EARKL+AAG DP E K+  K  Q   +  TFE +AREW     ++WS    
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  119  NRVKKSLEDNIFPAIGTCNIAELGTRDLLAPIKAVEVSGRLEVASRLQQRTTAIMRYAVQ  178
            + +  ++E +IFP IG   IAE+    LL +++ +E  G LE   +++QR   + RYA+ 
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  179  SGLIDYNPAQEMAGAVASGNRQHRPALELKRIPELLEKIDGYTGRPLTRWATELTLLIFI  238
            +G  DYNPA ++A+A+A+ ++ H P L  + +P++L+ + GYTG  +T+ AT++ +L  +
Sbjct  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV  240

Query  239  RSSELRFARWSEIDFETSMWTIPPEREPIPGVKHSQRGSKMRTPHLVPLSKQALAILKQI  298
            R+ ELRFARW +IDFET +W IP+E              KM+ PH+VPLS Q + ++KQ+
Sbjct  241  RTQELRFARWEDIDFETKLWEIPAE------------VMKMKRPHIVPLSEQVIMLFKQL  288

Query  299  KQFCGEHELIFIGDHDPRKPMSENTVNSALRVMGYDTKVEVCGHGFRTMACSSLIESGL-  357
              +  +H L+FIG +DPRKP+S +++N A+ ++GY  +  + GHGFR    + L E G+ 
Sbjct  289  EPISKHHPLVFIGRNDPRKPISKESINQAIELLGYKGR--LTGHGFRHTMSTILHEQGFN  346

Query  358  --WSKDAVERQMSHMERNSVRAAYIHKAEHLDERKLMLQWWANFLDA  402
              W    +E Q++H+++NS+R +Y H A  LD R+ M+QW A+++D+
Sbjct  347  SAW----IEMQLAHVDKNSIRDTYNH-ALYLDGRREMMQWYADYIDS  388

314) CKO_03532 in NC_009792


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  297 bits (1113),  Expect = 6e-82, Method: Compositional matrix adjust.
 Identities = 185/411 (46%), Positives = 273/411 (67%), Gaps = 24/411 (5%)

Query  1    MALTDIKVRTTKPSDKPFKLTDGQGMHLLINPNGSKYWRLQYRFDGKQKVLALGVYPMVS  60
            MALTDIKV+T+KP DKP+KL+DG GM LLIN NGSKYWR++YRF GK+K+L++GVYP V+
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   LGEARRKRDEAKKLVSVGIDPSEKKKADKIEQSEAL--TFEAVARDWHTACKRKWSDSHS  118
            L++AR KR EA+KL++ G DP+E KK +KI Q  +L  TFEA+AR+WH     +WS    
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  119  ERVLKSMEDGLFTTIGKRKISELNTRDLLAPIKAVEASGRLEVASRLQQRTTAVMRYAVQ  178
            + ++ + E ++F  IGKR I+E++   LL +++ +E  G LE   +++QR   V RYA+ 
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  179  NGLIDYNPAQEMAGAIAVAKRIHRPALPFERFSELLERIDNFKGRkltklavkltllIFI  238
             G  DYNPA ++A+A+A +K++H P L  + ++++L+ +  + G  +TK A ++ +L  +
Sbjct  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV  240

Query  239  RSSELRFARWSEIDFENAMWTIPGEREPLPGVKHSHRGSKMKTPHLVPLSRQALELLKAI  298
            R+ ELRFARW +IDFE  +W IP+E              KMK PH+VPLS Q + L+K +
Sbjct  241  RTQELRFARWEDIDFETKLWEIPAE------------VMKMKRPHIVPLSEQVIMLFKQL  288

Query  299  REISGEFDLVFIGDHDFRKPMSENTVNKALRSMGYDTTVEVCGHGFRAMACSALIESG--  356
              IS +  LVFIG +D RKP+S +++N+A+  +GY     + GHGFR    + L E G  
Sbjct  289  EPISKHHPLVFIGRNDPRKPISKESINQAIELLGYKGR--LTGHGFRHTMSTILHEQGFN  346

Query  357  -KWSRDAVERQMSHQERNSVRAAYIHKAEHLDERRLMLQWWADYLDETTKR  406
              W    +E Q++H ++NS+R +Y H A  LD RR M+QW ADY+D  + R
Sbjct  347  SAW----IEMQLAHVDKNSIRDTYNH-ALYLDGRREMMQWYADYIDSLSSR  392

315) Gbem_3253 in NC_011146


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  297 bits (1112),  Expect = 7e-82, Method: Compositional matrix adjust.
 Identities = 177/394 (45%), Positives = 277/394 (71%), Gaps = 4/394 (1%)

Query  1    MALTDVKVRNAKPGEKQAKLSDGDGMYLLVTPQGGKCWRLKYRIAGKEKVLALGTYPEIS  60
            MALTD+KV+ AKP +K  KL+DG+GMYLL+  +G+K WR+KYR+AGKEK+L++G YP+++
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   LSEARERKDAARKLIANGHDPGevkkaqkaaktaeaeNTFQAVTQEWHGRFKSQWSEKHA  120
            L++ARE++  ARKL+A G DPGE KK +K A+     NTF+A+++EWH     +WS +  
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  121  EQILRRLELDVFPWLGTRPVGEIKAPELLAVLRRIEMR-TLETAHRVRIACSQVFRYAVA  179
            ++I+  +E D+FP +G RP++EIK+  LL  LR++E R +LE  ++VR  C++VFRYA+ 
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  180  TGRAERDPVADLKGALPPVKNNHFAALTDPKAVAPLLRAIDGFEGSFVVKCALKLAALTF  239
            TGRA+ +P +DL +AL+  K+ HF+ LT ++ ++ +L  + G+ GS++ K A ++  LT 
Sbjct  181  TGRADYNPAPDLASALATPKKVHFPFLT-ANELPHFLNDLAGYTGSIITKTATQIIMLTG  239

Query  240  VRPGELRHAEWSEIDLEAARWEIPAERMKMKVAHLVPLSTQAVDILKELHPLTGSGTYVF  299
            VR  ELR A W +ID+E+  WEIPAE MKMK +H+VPLS Q + ++K+L+P++     VF
Sbjct  240  VRTQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHPLVF  299

Query  300  PCHRSPLRCMSENAVNAALRRMGFEKSEITGHGFRAMARTILDEVLHVRPDFIEHQLAHA  359
              +  P + +S +++N A+  +G+ K+ +TGHGFR    TIL+E     +  IE QLAH 
Sbjct  300  IGRNDPRKPISKESINQAIELLGY-KGRLTGHGFRHTMSTILHEQ-GFNSAWIEMQLAHV  357

Query  360  VKDPLGRAYNRTSHLAERQKMMQTWADFLDGLKT  393
             K+++  +YN++  L  R+ MMQ  AD++D+L +
Sbjct  358  DKNSIRDTYNHALYLDGRREMMQWYADYIDSLSS  391

316) ECO111_3718 in NC_013364


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  297 bits (1112),  Expect = 8e-82, Method: Compositional matrix adjust.
 Identities = 168/407 (42%), Positives = 271/407 (67%), Gaps = 27/407 (6%)

Query  1    MALTDAKIRAAKPSDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60
            MALTD K+++AKP DK+YKL+DG+GM+LL++ NGS+YWR++YR+ GKEK L++GVYP+V+
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   LSEARTKR--ARKLISEGIDPCEQKRAKKVVPDLQL--SFEHIARRWHA-SNKQWAQSHS  115
            L++AR KR  ARKL++ G DP E K+  K+  ++ L  +FE IAR WH     +W+    
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  116  DKVLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQ  175
            D ++ ++E ++FP+IG+R I+ ++   LL ++R  E +   E   +++QR + V RYA+ 
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  176  SGIIRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIDGYKGQPVTRLAVMLNLLVFI  235
            +G   YNPA D+A+AL+T K+ H P L  + LP++L+ + GY G  +T+ A  + +L  +
Sbjct  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV  240

Query  236  RSSELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQAVAILTEL  295
            R+ ELR+ARW +ID++  +W IPAE              KM+ PH+VPLS Q + ++ +L
Sbjct  241  RTQELRFARWEDIDFETKLWEIPAE------------VMKMKRPHIVPLSEQVIMLFKQL  288

Query  296  QTWAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQEVCGHGFRAMACSALIESGL-  354
            +  + ++ L+F G +DPRKPIS +++N+A+ ++GY     + GHGFR    + L E G+ 
Sbjct  289  EPISKHHPLVFIGRNDPRKPISKESINQAIELLGYKGR--LTGHGFRHTMSTILHEQGFN  346

Query  355  --WSRDAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDA  399
              W    +E Q++H ++N++R +Y H A  L+ RR M+QW AD++D+
Sbjct  347  SAW----IEMQLAHVDKNSIRDTYNH-ALYLDGRREMMQWYADYIDS  388

317) W5S_1543 in NC_017845


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  296 bits (1108),  Expect = 2e-81, Method: Compositional matrix adjust.
 Identities = 183/412 (45%), Positives = 270/412 (66%), Gaps = 24/412 (5%)

Query  1    MALTDIKVRSAKPEEKPYKLTDGNGMFLLVHTNGSKYWRLRYRSDGKEKTLALGVYPEVS  60
            MALTDIKV++AKP +KPYKL+DG GM+LL++TNGSKYWR++YR  GKEK L++GVYP+V+
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   LSEARQKRDEARKLIAAGVDPNEHKKAVKTQQQDD-EQTFEAVARAWHT-DNKKWSESHA  118
            L++AR+KR EARKL+AAG DP E KK  K  QQ    +TFEA+AR WH     +WS    
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  119  ERILKSLSDNIFPAIGSKHISDLKTRDLLRPIKSVERSGRLEVAKRLKQRVTAIMTYAVQ  178
            + I+ ++  +IFP IG + I+++K   LL +++ +E+ G LE  ++++QR   +  YA+ 
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  179  NGLIDYNPAQDMAGAIMPGKVEHrpalalerlpellGRIDGYKGREFTKWVINLSLLIFI  238
             G  DYNPA D+A+A+   K  H P L+ + LP++L  + GY G  +TK   ++ +L  +
Sbjct  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV  240

Query  239  RSSELRFARWPEIDFERALWTIPPEREPIPGVKFSERGSKMHTPHLVPLSRQALEILTKI  298
            R+ ELRFARW +IDFE  LW IP+E              KM  PH+VPLS Q + ++ ++
Sbjct  241  RTQELRFARWEDIDFETKLWEIPAE------------VMKMKRPHIVPLSEQVIMLFKQL  288

Query  299  REVSGHCELVFIGDHSSRKPVSEGTVNKALQTMGYDTKTEVCGHGFRTMACSSLIESGL-  357
              +S H  LVFIG + +RKP+S  ++N+A++ +GY  K  + GHGFR    + L E G+ 
Sbjct  289  EPISKHHPLVFIGRNDPRKPISKESINQAIELLGY--KGRLTGHGFRHTMSTILHEQGFN  346

Query  358  --WSRDAVERQMSHQERNGVRAAYIHKAEHLDERRLMLQWWADFLDANRERG  407
              W    +E Q++H ++N++R +Y H A  LD RR M+QW AD++D+   R 
Sbjct  347  SAW----IEMQLAHVDKNSIRDTYNH-ALYLDGRREMMQWYADYIDSLSSRE  393

318) Gbem_2993 in NC_011146


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  294 bits (1102),  Expect = 4e-81, Method: Compositional matrix adjust.
 Identities = 170/395 (44%), Positives = 269/395 (69%), Gaps = 6/395 (1%)

Query  1    MPLTDIAVKSAKPKEKDYKLSDGDGMYLLVTAGGGKRWRLKYRFLGKEKLLALGTYPDIS  60
            M+LTDI VK+AKPK+K YKL+DG+GMYLL+ + G+K WR+KYRF GKEK+L++G YPD++
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   LSEARNKRHEARKQLGHGIDPGAERKALKEVQAQEAAEIKNSFKLVACEWHSKFSGTWSN  120
            L++AR+KR EARK L+ G DPG  +   KE +  +   +KN+F  +A EWH   ++ WS 
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAK---KEEKIAQQMSLKNTFEAIAREWHQLKADRWSL  117

Query  121  GHAGTIMDRLTRDVFPWLGDKPICEVEPVDILGVLRRVESRGALETAHRIRTICGQVMRY  180
               + I+D + +D+FP +G +PI E+ P+ +L  LR++E RGALE  +++R  CG+V RY
Sbjct  118  RYRDEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRY  177

Query  181  AVATGRAKRDSAADLRGALPPANAKHHASMTDPKEVAELLRAIDGFKGTFHVKCALQLAP  240
            A+ TGRA  ++A+DL +AL+ ++  H + +T ++E++++L  + G+ G++  K A Q+  
Sbjct  178  AIVTGRADYNPAPDLASALATPKKVHFPFLT-ANELPHFLNDLAGYTGSIITKTATQIIM  236

Query  241  LLFVRPGELRQMEWAELDLDGRMWNIPGVKMKMGQPHIVPLAHQAAEILGQLKPLTGAGR  300
            L  VR  ELR   W ++D++ ++W+IP+  MKM +PHIVPL++Q   ++ QL P++    
Sbjct  237  LTGVRTQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHP  296

Query  301  YVFPCHRSPLRPMTNNAVNAALRRMGYTSDEMTGHGFRAMARTILDEVLQVRPDFIEHQL  360
             VF  +  P +P++++++N A+  +GY +  +TGHGFR    TIL+E     +  IE QL
Sbjct  297  LVFIGRNDPRKPISKESINQAIELLGYKG-RLTGHGFRHTMSTILHEQ-GFNSAWIEMQL  354

Query  361  AHAVKDPNGRAYNRTAHLAERRKMMQTWADYLDGL  395
            AH  K++   +YN++  L  RR MMQ  ADY+D+L
Sbjct  355  AHVDKNSIRDTYNHALYLDGRREMMQWYADYIDSL  389

319) BURPS1710b_1290 in NC_007434


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  294 bits (1101),  Expect = 5e-81, Method: Compositional matrix adjust.
 Identities = 176/395 (45%), Positives = 269/395 (69%), Gaps = 6/395 (1%)

Query  1    MPLTDVQVRNAKASAAPYKLTDGNGMFLLVQPNGAKYWRLSYRFLGKQKTLALGVYPAVT  60
            M+LTD++V+ AK+   PYKL+DG GM+LL++ NG+KYWR+ YRF GK+K L++GVYP VT
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   LATARKKRDEAREQLAAGIDPGEAKKEARRTAEIAAANSFEAVAREWFDSQRPGWSDGYA  120
            LA AR KR EAR  LAAG DPGEAKKE + + +++  N+FEA+AREW + +   WS  Y 
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  121  EKVLNSLEVDVFPKIGPRPIAEIDSPQMLSIVREVEARGVRETAKRILQRSRAVFQYGIV  180
            + +++++E D+FP IG RPIAEI + ++L  +R +E RG  E  +++ QR   VF+Y+IV
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  181  TGRCSRNPAADIDAQTVLKKGPGVQHMARVKATEIPQLMRDIDAYQGDLVTRLALRLMAL  240
            TGR   NPA+D+ +       P   H + + A E+P+++ D+ +Y G ++T+ A +++ L
Sbjct  181  TGRADYNPAPDLASALA---TPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIML  237

Query  241  TFVRTTEMIRAEWSEFDEAAAEWRVPPERMKMRDPHIVPLSRQALDVLAQLRALNGQHRF  300
            T VRT E+  A W ++D  +  W +P+E MKM+ PHIVPLS Q + ++ QL +++ +H +
Sbjct  238  TGVRTQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHPL  297

Query  301  VFYS-VQGRSHISNNTMLYALYRIGYKSRMTGHGFRGLAATALRELGFGRDVVERQMAHA  359
            VF +  + R  IS++++  A+  +GYK+R+TGHGFR   +T L+E GF    +E Q+AH 
Sbjct  298  VFIGRNDPRKPISKESINQAIELLGYKGRLTGHGFRHTMSTILHEQGFNSAWIEMQLAHV  357

Query  360  ERNQVTAAYVHAEYLPERRRMMQAW-GDHLDRLKA  393
            ++N +  +Y HA YL  RR MMQ W +D +D L +
Sbjct  358  DKNSIRDTYNHALYLDGRREMMQ-WYADYIDSLSS  391

320) GBP346_A1152 in NC_012695


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  294 bits (1102),  Expect = 5e-81, Method: Compositional matrix adjust.
 Identities = 177/395 (45%), Positives = 270/395 (69%), Gaps = 6/395 (1%)

Query  21   MPLTDVQVRNAKASAAPYKLTDGNGMFLLVQPNGAKYWRLSYRFLGKQKTLALGVYPAVT  80
            M+LTD++V+ AK+   PYKL+DG GM+LL++ NG+KYWR+ YRF GK+K L++GVYP VT
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  81   LATARKKRDEAREQLAAGIDPGEAKKEARRTAEIAAANSFEAVAREWFDSQRPGWSDGYA  140
            LA AR KR EAR  LAAG DPGEAKKE + + +++  N+FEA+AREW + +   WS  Y 
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  141  EKVLNSLEVDVFPKIGPRPIAEIDSPQMLSIVREVEARGVRETAKRILQRSRAVFQYGIV  200
            + +++++E D+FP IG RPIAEI + ++L  +R +E RG  E  +++ QR   VF+Y+IV
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  201  TGRCSRNPAADIDAQTALKKGPGVQHMARVKATEIPQLMRDIDAYQGDLVTRLALRLMAL  260
            TGR   NPA+D+ +  A    P   H + + A E+P+++ D+ +Y G ++T+ A +++ L
Sbjct  181  TGRADYNPAPDLASALA---TPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIML  237

Query  261  TCVRTTEMIRAEWSEFDEAAAEWRVPPERMKMRDPHIVPLSRQALDVLAQLRALNGQHRF  320
            T VRT E+  A W ++D  +  W +P+E MKM+ PHIVPLS Q + ++ QL +++ +H +
Sbjct  238  TGVRTQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHPL  297

Query  321  VFYS-VQGRSHISNNTMLYALYRIGYKSRMTGHGFRGLAATALRELGFGRDVVERQMAHA  379
            VF +  + R  IS++++  A+  +GYK+R+TGHGFR   +T L+E GF    +E Q+AH 
Sbjct  298  VFIGRNDPRKPISKESINQAIELLGYKGRLTGHGFRHTMSTILHEQGFNSAWIEMQLAHV  357

Query  380  ERNQVTAAYVHAEYLPERRRMMQAW-GDHLDRLKA  413
            ++N +  +Y HA YL  RR MMQ W +D +D L +
Sbjct  358  DKNSIRDTYNHALYLDGRREMMQ-WYADYIDSLSS  391

321) HYPMC_0824 in NC_015717


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  293 bits (1097),  Expect = 1e-80, Method: Compositional matrix adjust.
 Identities = 175/394 (45%), Positives = 270/394 (69%), Gaps = 5/394 (1%)

Query  1    MPLTDAAIRAAKPGPSPFKISDGGGLHLLVQTGGTKLWRLAYRFAGKQKTLAMGVYPTIA  60
            M+LTD  +++AKP   P+K++DGGG+ LL++T G+K WR+ YRFAGK+K L++GVYP ++
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   LAKAREGREKAKRLLADGIDPAAQKRRDKIAAKVSADATFRSIALEYIADRRHALTPLYA  120
            LA ARE R  A++LLA G DP+  K+ +KIA ++S   TF +IA E    + +  +  Y 
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  121  DQILRRLEADIFPALGNRPIADIDAPELLETLRKVEKRGALEQAKRLRQTCGQIFRYAVV  180
            D+I+  +E DIFP +G+RPIA+I +  LLE+LRK+EKRGALE+ +++RQ CG++FRYA+V
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  181  TSRAKHDPSAALKGALKPKGRQRHHKPMPRHDLPGFLRTIDDYYGEPRTGLALRLIVLTM  240
            T+RA  +P++ L +AL +  ++ H   +  ++LP FL  + +Y G   T  A ++I+LT 
Sbjct  181  TGRADYNPAPDLASAL-ATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTG  239

Query  241  VRTTELRAGRWEEFENLDGDEPLWRIPAERMKARFEHLVPLSRQAVAALNELRAMPGAKA  300
            VRT ELR +RWE+   +D +  LW IPAE MK +  H+VPLS Q +  +++L +++   +
Sbjct  240  VRTQELRFARWED---IDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHP  296

Query  301  EGFLFPSPSKQGCMSNNCMLYALYRLGYHGRATIHGFRGVASTLLNEAGFDDDWIEKQLA  360
              F+  + +++  +S++ +  A+  LGY GR T HGFR   ST+L+E GF+  WIE QLA
Sbjct  297  LVFIGRNDPRKP-ISKESINQAIELLGYKGRLTGHGFRHTMSTILHEQGFNSAWIEMQLA  355

Query  361  HDERDETRAAYNAAEYLAGRRSMLQWWADWLEQI  394
            H +++  R +YN A YL GRR M+QW AD ++ +
Sbjct  356  HVDKNSIRDTYNHALYLDGRREMMQWYADYIDSL  389

322) Neut_1125 in NC_008344


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  293 bits (1096),  Expect = 1e-80, Method: Compositional matrix adjust.
 Identities = 168/393 (43%), Positives = 263/393 (67%), Gaps = 10/393 (2%)

Query  1    MKLTDSAIRAAKPKEKQYKLTDGNGLTLLIYPDGSKHWRYRYLFNEKESMLSLGKYPETT  60
            M LTD  +++AKPK+K YKL+DG G+ LLI  +GSK WR +Y F  KE MLS+G YP+ T
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   LAQARSIHDGYKAILKQGINPSTHRKEEKRKAIVSVENSFEAVARTWWMHWKHAKTER-H  119
            LA+AR  +   + +L  G +P+  +KEEK    +S+ N+FEA+AR    +W + K++R  
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAR----EWHQLKADRWS  116

Query  120  VAY---TLRRMEADIFPFIGAKPVNTLTAMHFIELVYKVQSRGALDIAKRVLTMCGQVMR  176
            + Y    +   E DIFP+IG +P+  + +M ++E + K++ RGAL+  ++V   CG+V R
Sbjct  117  LRYRDEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFR  176

Query  177  YAVQHGLSERNPAADIKPADILKKRKKVNHKRIPESELPDLLQKINQYDGQPLTRLALQL  236
            YA+  G ++ NPA+D+  A  L   KKV+   +  +ELP++L+ +  Y G  +T+ A Q+
Sbjct  177  YAIVTGRADYNPAPDL--ASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQI  234

Query  237  MTLTFIRTSELIGGRWEEISFDNAEWRIPPERMKMRSQHIVPLSDQAITVLREIKALNSD  296
            + LT +RT EL  +RWE+I F+   W IP+E MKM+  HIVPLS+Q I +++++ +++ +
Sbjct  235  IMLTGVRTQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKH  294

Query  297  PVLLFPSERRNGKTMSNNTIIYALYRIGYKGRMTGHGFRGLASTVLHEKNFDHKWIELQL  356
              L+F +     K +S+++I  A+  +GYKGR+TGHGFR   ST+LHE+ F+  WIE+QL
Sbjct  295  HPLVFIGRNDPRKPISKESINQAIELLGYKGRLTGHGFRHTMSTILHEQGFNSAWIEMQL  354

Query  357  AHAERDEVSAAYNHALYLEQRRKMMQWWGEYIE  389
            AH +++ +  +YNHALYL+ RR MMQW ++YI+
Sbjct  355  AHVDKNSIRDTYNHALYLDGRREMMQWYADYID  387

323) Neut_1755 in NC_008344


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  293 bits (1096),  Expect = 1e-80, Method: Compositional matrix adjust.
 Identities = 168/393 (43%), Positives = 263/393 (67%), Gaps = 10/393 (2%)

Query  1    MKLTDSAIRAAKPKEKQYKLTDGNGLTLLIYPDGSKHWRYRYLFNEKESMLSLGKYPETT  60
            M LTD  +++AKPK+K YKL+DG G+ LLI  +GSK WR +Y F  KE MLS+G YP+ T
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   LAQARSIHDGYKAILKQGINPSTHRKEEKRKAIVSVENSFEAVARTWWMHWKHAKTER-H  119
            LA+AR  +   + +L  G +P+  +KEEK    +S+ N+FEA+AR    +W + K++R  
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAR----EWHQLKADRWS  116

Query  120  VAY---TLRRMEADIFPFIGAKPVNTLTAMHFIELVYKVQSRGALDIAKRVLTMCGQVMR  176
            + Y    +   E DIFP+IG +P+  + +M ++E + K++ RGAL+  ++V   CG+V R
Sbjct  117  LRYRDEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFR  176

Query  177  YAVQHGLSERNPAADIKPADILKKRKKVNHKRIPESELPDLLQKINQYDGQPLTRLALQL  236
            YA+  G ++ NPA+D+  A  L   KKV+   +  +ELP++L+ +  Y G  +T+ A Q+
Sbjct  177  YAIVTGRADYNPAPDL--ASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQI  234

Query  237  MTLTFIRTSELIGGRWEEISFDNAEWRIPPERMKMRSQHIVPLSDQAITVLREIKALNSD  296
            + LT +RT EL  +RWE+I F+   W IP+E MKM+  HIVPLS+Q I +++++ +++ +
Sbjct  235  IMLTGVRTQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKH  294

Query  297  PVLLFPSERRNGKTMSNNTIIYALYRIGYKGRMTGHGFRGLASTVLHEKNFDHKWIELQL  356
              L+F +     K +S+++I  A+  +GYKGR+TGHGFR   ST+LHE+ F+  WIE+QL
Sbjct  295  HPLVFIGRNDPRKPISKESINQAIELLGYKGRLTGHGFRHTMSTILHEQGFNSAWIEMQL  354

Query  357  AHAERDEVSAAYNHALYLEQRRKMMQWWGEYIE  389
            AH +++ +  +YNHALYL+ RR MMQW ++YI+
Sbjct  355  AHVDKNSIRDTYNHALYLDGRREMMQWYADYID  387

324) KOX_09480 in NC_016612


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  293 bits (1099),  Expect = 8e-81, Method: Compositional matrix adjust.
 Identities = 181/406 (45%), Positives = 281/406 (70%), Gaps = 25/406 (6%)

Query  1    MALTDIKVRTAKPTDKQYKLTDGSGMHLLVHPNGSKYWRLQYRFGGKQKMLALGVYPEIk  60
            MALTDIKV+TAKP DK YKL+DG+GM LL++ NGSKYWR++YRF+GK+KML++GVYP++ 
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   ladararrdearkllaNGVDPGDKKKNDKVEQSKA--RTFKEVAIEWHG-TNKKWSEDHA  117
            LADAR +R EARKLLA G DPG+ KK++K+ Q  +   TF  +A EWH     +WS    
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  118  HRVLKSLEDNLFAALGERNITELKTRDLLAPIKAVEMSGRLEVAARLQQRTSAIMRYAVQ  177
            + ++ ++E ++F+ +G R I+E+K   LL +++ +E  G LE   +++QR + + RYA+ 
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  178  SGLIDYNPAQEMAGAVASSNRQHRPALELKRIPELLEKIDGYTGRPLTRWATELTLLIFI  237
            +G  DYNPA ++A+A+A++++ H P L  + +P++L+ + GYTG  +T+ AT++ +L  +
Sbjct  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV  240

Query  238  RSSELRFARWSEIDFETSMWTIPPEREPIPGVKHSQRGSKMRTPHLVPLSKQALAILKQI  297
            R+ ELRFARW +IDFET +W IP+E              KM+ PH+VPLS Q + ++KQ+
Sbjct  241  RTQELRFARWEDIDFETKLWEIPAE------------VMKMKRPHIVPLSEQVIMLFKQL  288

Query  298  KQFCGEHELIFIGDHDPRKPMSENTVNSALRVMGYDTKVEVCGHGFRTMACSSLIESGL-  356
              +  +H L+FIG +DPRKP+S +++N A+ ++GY  +  + GHGFR    + L E G+ 
Sbjct  289  EPISKHHPLVFIGRNDPRKPISKESINQAIELLGYKGR--LTGHGFRHTMSTILHEQGFN  346

Query  357  --WSKDAVERQMSHMERNSVRAAYIHKAEHLDERKFMLQWWADFLD  400
              W    +E Q++H+++NS+R +Y H A  LD R+ M+QW AD++D
Sbjct  347  SAW----IEMQLAHVDKNSIRDTYNH-ALYLDGRREMMQWYADYID  387

325) A11S_2095 in NC_020812


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  292 bits (1095),  Expect = 2e-80, Method: Compositional matrix adjust.
 Identities = 180/397 (46%), Positives = 267/397 (68%), Gaps = 7/397 (1%)

Query  1    MKLSDKTCKAAKPRESSYKLFDGGGLFLEITPNGSKLWRLKYRFLGKEKRISLGAYPIVS  60
            M L+D   K+AKP++ +YKL DGGG++L I  NGSK WR+KYRF GKEK +S+G YP V+
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   LADARDGRERAKKQLVQGVDPSNAKQAHRREAIRNAENTFKAVALEWHEKQLARWTSTHA  120
            LADAR+ R  A+K L  G DP++AK+ ++     +  NTF A+A EWH+ +  RW+    
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  121  QNVTRRMEVDIFPYIGNRPIADIDAPELLSVLRRIEARGALDVTARVKQISGQVFRYGIA  180
            +++    E DIFPYIG+RPIA+I +  LL  LR++E RGAL+   +V+Q  G+VFRY+I 
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  181  TGRCQRDPSADLKGALKVNKTTSYACLDIKEMPEFLEKLERNEARLFATTRRAIKILMLT  240
            TGR + +P++DL +AL   K   ++ L  +E+P+FL+ L    + +   T+ A +I+MLT
Sbjct  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSI--ITKTATQIIMLT  238

Query  241  FVRTGELINATWDEFDLENATWEIPGWRMKMRNPHIVPLSRQVIEILKEQKKETEHLTTP  300
             VRT EL  A W+++D+E   WEIP+  MKM+ PHIVPLS QVI ++K+    + H   P
Sbjct  239  GVRTQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKH--HP  296

Query  301  WVFPSQVRPKDPMSNNTILFAIGRMGYKKRMTGHGFRALAMSNIKEKLGYRHEVVDRQLA  360
             VF ++  P+ P+S+++I  AI  +GYK R+TGHGFR  +MS I +  G+    ++ QLA
Sbjct  297  LVFIGRNDPRKPISKESINQAIELLGYKGRLTGHGFRH-TMSTILHEQGFNSAWIEMQLA  355

Query  361  HAHRNKIDRAYDRAQFLDERRKMMGEW-ADYLDEVAT  396
            H ++N I  +Y++A +LD RR MM +W ADY+D +++
Sbjct  356  HVDKNSIRDTYNHALYLDGRREMM-QWYADYIDSLSS  391

326) Pecwa_1669 in NC_013421


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  292 bits (1095),  Expect = 2e-80, Method: Compositional matrix adjust.
 Identities = 182/412 (45%), Positives = 269/412 (66%), Gaps = 24/412 (5%)

Query  1    MALTDIKVRSTKPEEKPYKLTDGNGMFLLVHTNGSKYWRLRYRSDGKEKTLALGVYPEVS  60
            MALTDIKV+++KP +KPYKL+DG GM+LL++TNGSKYWR++YR  GKEK L++GVYP+V+
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   LSEARQKRDEARKLIAAGVDPNEHKKAVKTQQQDD-AQTFEVVARAWHA-DNKKWSGSHA  118
            L++AR+KR EARKL+AAG DP E KK  K  QQ    +TFE +AR WH     +WS    
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  119  ERILKSLSDNIFPAIGGAHIANLKTRDLLTPIKSVERSGRLEVAKRLKQRVTAIMTYAVQ  178
            + I+ ++  +IFP IG   IA++K   LL +++ +E+ G LE  ++++QR   +  YA+ 
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  179  NGLIDYNPAQDMAGAIMPGKVEHrpalalerlpellGRIDGYKGREFTKWVINLSLLIFI  238
             G  DYNPA D+A+A+   K  H P L+ + LP++L  + GY G  +TK   ++ +L  +
Sbjct  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV  240

Query  239  RSSELRFARWPEIDFERALWTIPPEREPIPGVKFSERGSKMHTPHLVPLSRQALEILKKI  298
            R+ ELRFARW +IDFE  LW IP+E              KM  PH+VPLS Q + ++K++
Sbjct  241  RTQELRFARWEDIDFETKLWEIPAE------------VMKMKRPHIVPLSEQVIMLFKQL  288

Query  299  REVSGHCELVFIGDHSSRKPVSEGTVNKALQTMGYDTKTEVCGHGFRTMACSSLIESGL-  357
              +S H  LVFIG + +RKP+S  ++N+A++ +GY  K  + GHGFR    + L E G+ 
Sbjct  289  EPISKHHPLVFIGRNDPRKPISKESINQAIELLGY--KGRLTGHGFRHTMSTILHEQGFN  346

Query  358  --WSRDAVERQMSHQERNGVRAAYIHKAEHLDERKLMLQWWADFLDANRERG  407
              W    +E Q++H ++N++R +Y H A  LD R+ M+QW AD++D+   R 
Sbjct  347  SAW----IEMQLAHVDKNSIRDTYNH-ALYLDGRREMMQWYADYIDSLSSRE  393

327) SPC_4619 in NC_012125


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  292 bits (1095),  Expect = 2e-80, Method: Compositional matrix adjust.
 Identities = 181/411 (45%), Positives = 275/411 (67%), Gaps = 24/411 (5%)

Query  1    MALTDIKVRTTKPSDKPFKLTDGQGMHLLINPNGSKYWRLQYRFGGKQKVLALGVYPMVS  60
            MALTDIKV+T+KP DKP+KL+DG GM LLIN NGSKYWR++YRF+GK+K+L++GVYP V+
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   LGEARRKRDEAKKLVSDGIDPSEKKKADKIEQSEAL--TFEAVARDWHTACKRKWSDFHS  118
            L++AR KR EA+KL++ G DP+E KK +KI Q  +L  TFEA+AR+WH     +WS    
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  119  ERVLKSLEDNLFSSIGQRKIAELKTKDLLDPVKTVAASGRLEVAARLQQRTTVIMRYAVQ  178
            + ++ ++E ++F+ IG+R IAE+K   LL++++ +   G LE   +++QR   + RYA+ 
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  179  NGLIDYNPAQEMSGAIAVAKRTHRPALPFDRFSELLERIESFKGRkltklavkltllIFI  238
             G  DYNPA ++++A+A +K+ H P L  + ++++L+ + ++ G  +TK A ++ +L  +
Sbjct  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV  240

Query  239  RSSELRFARWSEIDFVNAMWTIPGEREPLPGVKHSHRGSKMKTPHLVPLSRQALELLKAI  298
            R+ ELRFARW +IDF   +W IP+E              KMK PH+VPLS Q + L+K +
Sbjct  241  RTQELRFARWEDIDFETKLWEIPAE------------VMKMKRPHIVPLSEQVIMLFKQL  288

Query  299  REISGECDLVFIGDHDFRKPMSENTVNKALRSMGYDTTVEVCGHGFRAMACSALIESG--  356
              IS +  LVFIG +D RKP+S +++N+A+  +GY     + GHGFR    + L E G  
Sbjct  289  EPISKHHPLVFIGRNDPRKPISKESINQAIELLGYKGR--LTGHGFRHTMSTILHEQGFN  346

Query  357  -KWSRDAVERQMSHQERNSVRAAYIHKAEHLDERKLMLQWWADYLDETTKR  406
              W    +E Q++H ++NS+R +Y H A  LD R+ M+QW ADY+D  + R
Sbjct  347  SAW----IEMQLAHVDKNSIRDTYNH-ALYLDGRREMMQWYADYIDSLSSR  392

328) Ser39006_3432 in NC_022268


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  292 bits (1093),  Expect = 2e-80, Method: Compositional matrix adjust.
 Identities = 179/407 (44%), Positives = 275/407 (68%), Gaps = 25/407 (6%)

Query  1    MALTDLKVKSAKPSSKPIKLTDGFGMHLLVHTNGSKYWRFQYRFAGKQKMLALGVYPSVS  60
            MALTD+KVK+AKP  KP KL+DG GM LL++TNGSKYWR +YRFAGK+KML++GVYP V+
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   LAEARERRDNARKLIANGIDPSEKKKADKIEESGAL--TFETVARSWHS-SNKTWSEGHR  117
            LA+ARE+R +ARKL+A G DP+E KK +KI +  +L  TFE++AR WH      WS   R
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  118  TLILNSLTTHVFPIIGQRNVTDLKTRDLLVPVKKAEQTGHLELASRLQQRITAIMRYAVH  177
              I++++  ++FP IG+R ++++K   LL +++K E+ G LE   +++QR   + RYA+ 
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  178  NALIEHNPAYDLAGAIATVKSVHRPALSLERIAELMERIEAYKGKGLTQLAVRLCLLTFI  237
             +  + NPA DLA+A+AT K VH P L+ + ++++++ + +Y G  +T+ A ++ +LT +
Sbjct  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV  240

Query  238  RSSELRFARWSEFDFKNALWTIPAEREPLKNIKFSHRGSKMKSPHLVPLSKQSLAILKEI  297
            R+ ELRFARW ++DF   LW IPAE              KMK PH+VPLS Q + ++K++
Sbjct  241  RTQELRFARWEDIDFETKLWEIPAE------------VMKMKRPHIVPLSEQVIMLFKQL  288

Query  298  KAISGAHKFVFTGFSYADKPISENTINKALRAMGYNTQKDVCCHGFRTMACSALIESGL-  356
             +IS  H +VF G + + KPIS ++IN+A+  +GY+ +  +  HGFR    + L E G+ 
Sbjct  289  EPISKHHPLVFIGRNDPRKPISKESINQAIELLGYKGR--LTGHGFRHTMSTILHEQGFN  346

Query  357  --WSRDAVERQMSHQERSSVRAAYIHKAEHLDERRLMLQWWANFLDA  401
              W    +E Q++H +++S+R +Y H A  LD RR M+QW A+++D+
Sbjct  347  SAW----IEMQLAHVDKNSIRDTYNH-ALYLDGRREMMQWYADYIDS  388

329) Galf_2041 in NC_014394


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  291 bits (1088),  Expect = 5e-80, Method: Compositional matrix adjust.
 Identities = 181/374 (49%), Positives = 260/374 (70%), Gaps = 4/374 (1%)

Query  22   DGDGMYIEVMPSGSKYWRLKYRYAGKEKRLALGVYPEVSLKdarerrdaarKLIANGTDP  81
            DG+GMY+ +  +GSKYWR+KYR+AGKEK L++GVYP+V+L DARE+R  ARKL+A G DP
Sbjct  22   DGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVTLADAREKRSEARKLLAAGGDP  81

Query  82   GEAKQAQKREGKIAAANTFEAVAREWVENRSNDWTAGHKALTLRTLEQDAFPSIGRRPIA  141
            GEAK+ +K   +++  NTFEA+AREW + +++ W+   +   + T+E+D FP IG+RPIA
Sbjct  82   GEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYRDEIIDTFEKDIFPYIGKRPIA  141

Query  142  EISSSEVLATVRAIEKRGALEIAGRVLQRCSAVFRYAIATDRCKNNPAFKMSEALKSPTR  201
            EI +  +L ++R +EKRGALE   +V QRC+ VFRYAI T+R   NPA  ++ AL +P +
Sbjct  142  EIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIVTGRADYNPAPDLASALATPKK  201

Query  202  SHYNTIEKGGFPKLLRDIDGYQGSPMTTYILQLMALTFTRTGELVNAEWKEIDLDRAEWL  261
             H+  +    +P +L D+ GY GS +T    Q++ LT  RT EL  A W +ID++   W 
Sbjct  202  VHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGVRTQELRFARWEDIDFETKLWE  261

Query  262  IPAERMKMRRPHLVPLSVQAVAVFREAAKLSGDRVHVFPNRNDPSQPASNAIILRALGRM  321
            IPAE MKM+RPH+VPLS Q + +F++   +S ++  VF  RNDP +P S+  I +A+  +
Sbjct  262  IPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHPLVFIGRNDPRKPISKESINQAIELL  321

Query  322  GYTGKMTGHGFRSAASTMLNENKSKWGIHRDTIELQLAHVEKNASRAAYNFAEYLDERRT  381
            GY G++TGHGFR + ST+L+E+    G++   IE+QLAHV+KN+ R +YN A YLD RR 
Sbjct  322  GYKGRLTGHGFRHTMSTILHEQ----GFNSAWIEMQLAHVDKNSIRDTYNHALYLDGRRE  377

Query  382  MMQQWADHLDKLKA  395
            MMQ  AD +D L +
Sbjct  378  MMQWYADYIDSLSS  391

330) DVU1527 in NC_002937


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  291 bits (1089),  Expect = 5e-80, Method: Compositional matrix adjust.
 Identities = 167/392 (43%), Positives = 268/392 (69%), Gaps = 8/392 (2%)

Query  2    LTDIKARAAKPAEKVYRLYDGGGMYLEVPPSGNKRWRLKYRVNGKEKRLSLGVYPNVGLK  61
            LTDIK ++AKP +K Y+L DGGGMYL +  +G+K WR+KYR  GKEK LS+GVYP+V L 
Sbjct  3    LTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVTLA  62

Query  62   EAREKRDELRRLIAEGIDPAAQRCPQKVAPT---ADSFEMVAREWMDLRSPAWAPRHLST  118
            +AREKR E R+L+A G DP+  +  +K+A      ++FE +AREW +L++  W+ R    
Sbjct  63   DAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYRDE  122

Query  119  TCQRLEAYIFPHIGPLPIDQIGPLDVLNALRIVEKRGAVEAARKTLSICSQVFRYAVASA  178
              + +E  IFP IG  PI +I P+ +L+ALR +EKRGA+E  RK    C++VFRYA+ ++
Sbjct  123  IIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIVTG  182

Query  179  RIQSDPCRDLRGALKTRQPGHYAAIVDPKDVGALMRAIDGYSGAMVVRCALRFLALTFVR  238
            R + +P  DL +AL T +  H+ +++ ++++  ++  + GY+G+++ + A +++ LT VR
Sbjct  183  RADYNPAPDLASALATPKKVHF-PFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGVR  241

Query  239  PGELRAAEWNEFDMERRIWTIPAHKMKKRREHIVPLSTQALAVLRDVRATAPRLNSPMVF  298
              ELR A W+++D E ++W IPA+ MK +R HIVPLS Q + +++++ + +   + P+VF
Sbjct  242  TQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISK--HHPLVF  299

Query  299  QSVRLRSDRGLSENTLLVALRSLGYGQGTMTAHGFRAMASSLLNGLGYNPDVIERQLAHI  358
             + R  + + +S +++  A+  LGY +G +T+HGFR   S++L+  G+N+  IE QLAH+
Sbjct  300  IG-RNDPRKPISKESINQAIELLGY-KGRLTGHGFRHTMSTILHEQGFNSAWIEMQLAHV  357

Query  359  EGNKIRAAYHRTEYLEERTAMMQAYADYLDSL  390
            + N IR +Y+++ YL+ R  MMQ YADY+DSL
Sbjct  358  DKNSIRDTYNHALYLDGRREMMQWYADYIDSL  389

331) Deval_1767 in NC_017310


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  291 bits (1089),  Expect = 5e-80, Method: Compositional matrix adjust.
 Identities = 167/392 (43%), Positives = 268/392 (69%), Gaps = 8/392 (2%)

Query  2    LTDIKARAAKPAEKVYRLYDGGGMYLEVPPSGNKRWRLKYRVNGKEKRLSLGVYPNVGLK  61
            LTDIK ++AKP +K Y+L DGGGMYL +  +G+K WR+KYR  GKEK LS+GVYP+V L 
Sbjct  3    LTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVTLA  62

Query  62   EAREKRDELRRLIAEGIDPAAQRCPQKVAPT---ADSFEMVAREWMDLRSPAWAPRHLST  118
            +AREKR E R+L+A G DP+  +  +K+A      ++FE +AREW +L++  W+ R    
Sbjct  63   DAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYRDE  122

Query  119  TCQRLEAYIFPHIGPLPIDQIGPLDVLNALRIVEKRGAVEAARKTLSICSQVFRYAVASA  178
              + +E  IFP IG  PI +I P+ +L+ALR +EKRGA+E  RK    C++VFRYA+ ++
Sbjct  123  IIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIVTG  182

Query  179  RIQSDPCRDLRGALKTRQPGHYAAIVDPKDVGALMRAIDGYSGAMVVRCALRFLALTFVR  238
            R + +P  DL +AL T +  H+ +++ ++++  ++  + GY+G+++ + A +++ LT VR
Sbjct  183  RADYNPAPDLASALATPKKVHF-PFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGVR  241

Query  239  PGELRAAEWNEFDMERRIWTIPAHKMKKRREHIVPLSTQALAVLRDVRATAPRLNSPMVF  298
              ELR A W+++D E ++W IPA+ MK +R HIVPLS Q + +++++ + +   + P+VF
Sbjct  242  TQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISK--HHPLVF  299

Query  299  QSVRLRSDRGLSENTLLVALRSLGYGQGTMTAHGFRAMASSLLNGLGYNPDVIERQLAHI  358
             + R  + + +S +++  A+  LGY +G +T+HGFR   S++L+  G+N+  IE QLAH+
Sbjct  300  IG-RNDPRKPISKESINQAIELLGY-KGRLTGHGFRHTMSTILHEQGFNSAWIEMQLAHV  357

Query  359  EGNKIRAAYHRTEYLEERTAMMQAYADYLDSL  390
            + N IR +Y+++ YL+ R  MMQ YADY+DSL
Sbjct  358  DKNSIRDTYNHALYLDGRREMMQWYADYIDSL  389

332) int in NC_011748


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  290 bits (1087),  Expect = 7e-80, Method: Compositional matrix adjust.
 Identities = 170/407 (42%), Positives = 273/407 (68%), Gaps = 25/407 (6%)

Query  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60
            MALTD K+++AKP DK+YKL+DG+GM+LL++ NGS+YWR++YR+ GKEK L++GVYP+V+
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   LSEARTKRDEARKLISEGIDPCEQKRVKKVVPDLQL--SFEHIARRWHA-SNKQWAQSHS  117
            L++AR KR EARKL++ G DP E K+  K+  ++ L  +FE IAR WH     +W+    
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  118  DKVLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQ  177
            D ++ ++E ++FP+IG+R I+ ++   LL ++R  E +   E   +++QR + V RYA+ 
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  178  SGIIRYNPALDMAGALTTVKRQHrpalelsrlpellsRIDGYKGQPVTRLAVMLNLLVFI  237
            +G   YNPA D+A+AL+T K+ H P L  + LP++L+ + GY G  +T+ A  + +L  +
Sbjct  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV  240

Query  238  RSSELRYARWSEIDIDNSMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAEL  297
            R+ ELR+ARW +ID++  +W IPAE              KM+ PH+VPLS QV+ ++ +L
Sbjct  241  RTQELRFARWEDIDFETKLWEIPAE------------VMKMKRPHIVPLSEQVIMLFKQL  288

Query  298  QTWAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQEVCGHGFRAMACSALIESGL-  356
            +  + ++ L+F G +DPRKPIS +++N+A+ ++GY     + GHGFR    + L E G+ 
Sbjct  289  EPISKHHPLVFIGRNDPRKPISKESINQAIELLGYKGR--LTGHGFRHTMSTILHEQGFN  346

Query  357  --WSRDAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDA  401
              W    +E Q++H ++N++R +Y H A  L+ RR M+QW AD++D+
Sbjct  347  SAW----IEMQLAHVDKNSIRDTYNH-ALYLDGRREMMQWYADYIDS  388

333) O3M_22875 in NC_018650


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  290 bits (1087),  Expect = 7e-80, Method: Compositional matrix adjust.
 Identities = 170/407 (42%), Positives = 273/407 (68%), Gaps = 25/407 (6%)

Query  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60
            MALTD K+++AKP DK+YKL+DG+GM+LL++ NGS+YWR++YR+ GKEK L++GVYP+V+
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   LSEARTKRDEARKLISEGIDPCEQKRVKKVVPDLQL--SFEHIARRWHA-SNKQWAQSHS  117
            L++AR KR EARKL++ G DP E K+  K+  ++ L  +FE IAR WH     +W+    
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  118  DKVLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQ  177
            D ++ ++E ++FP+IG+R I+ ++   LL ++R  E +   E   +++QR + V RYA+ 
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  178  SGIIRYNPALDMAGALTTVKRQHrpalelsrlpellsRIDGYKGQPVTRLAVMLNLLVFI  237
            +G   YNPA D+A+AL+T K+ H P L  + LP++L+ + GY G  +T+ A  + +L  +
Sbjct  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV  240

Query  238  RSSELRYARWSEIDIDNSMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAEL  297
            R+ ELR+ARW +ID++  +W IPAE              KM+ PH+VPLS QV+ ++ +L
Sbjct  241  RTQELRFARWEDIDFETKLWEIPAE------------VMKMKRPHIVPLSEQVIMLFKQL  288

Query  298  QTWAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQEVCGHGFRAMACSALIESGL-  356
            +  + ++ L+F G +DPRKPIS +++N+A+ ++GY     + GHGFR    + L E G+ 
Sbjct  289  EPISKHHPLVFIGRNDPRKPISKESINQAIELLGYKGR--LTGHGFRHTMSTILHEQGFN  346

Query  357  --WSRDAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDA  401
              W    +E Q++H ++N++R +Y H A  L+ RR M+QW AD++D+
Sbjct  347  SAW----IEMQLAHVDKNSIRDTYNH-ALYLDGRREMMQWYADYIDS  388

334) O3K_22970 in NC_018658


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  290 bits (1087),  Expect = 7e-80, Method: Compositional matrix adjust.
 Identities = 170/407 (42%), Positives = 273/407 (68%), Gaps = 25/407 (6%)

Query  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60
            MALTD K+++AKP DK+YKL+DG+GM+LL++ NGS+YWR++YR+ GKEK L++GVYP+V+
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   LSEARTKRDEARKLISEGIDPCEQKRVKKVVPDLQL--SFEHIARRWHA-SNKQWAQSHS  117
            L++AR KR EARKL++ G DP E K+  K+  ++ L  +FE IAR WH     +W+    
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  118  DKVLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQ  177
            D ++ ++E ++FP+IG+R I+ ++   LL ++R  E +   E   +++QR + V RYA+ 
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  178  SGIIRYNPALDMAGALTTVKRQHrpalelsrlpellsRIDGYKGQPVTRLAVMLNLLVFI  237
            +G   YNPA D+A+AL+T K+ H P L  + LP++L+ + GY G  +T+ A  + +L  +
Sbjct  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV  240

Query  238  RSSELRYARWSEIDIDNSMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAEL  297
            R+ ELR+ARW +ID++  +W IPAE              KM+ PH+VPLS QV+ ++ +L
Sbjct  241  RTQELRFARWEDIDFETKLWEIPAE------------VMKMKRPHIVPLSEQVIMLFKQL  288

Query  298  QTWAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQEVCGHGFRAMACSALIESGL-  356
            +  + ++ L+F G +DPRKPIS +++N+A+ ++GY     + GHGFR    + L E G+ 
Sbjct  289  EPISKHHPLVFIGRNDPRKPISKESINQAIELLGYKGR--LTGHGFRHTMSTILHEQGFN  346

Query  357  --WSRDAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDA  401
              W    +E Q++H ++N++R +Y H A  L+ RR M+QW AD++D+
Sbjct  347  SAW----IEMQLAHVDKNSIRDTYNH-ALYLDGRREMMQWYADYIDS  388

335) SFxv_3245 in NC_017328


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  290 bits (1087),  Expect = 7e-80, Method: Compositional matrix adjust.
 Identities = 170/407 (42%), Positives = 273/407 (68%), Gaps = 25/407 (6%)

Query  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60
            MALTD K+++AKP DK+YKL+DG+GM+LL++ NGS+YWR++YR+ GKEK L++GVYP+V+
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   LSEARTKRDEARKLISEGIDPCEQKRVKKVVPDLQL--SFEHIARRWHA-SNKQWAQSHS  117
            L++AR KR EARKL++ G DP E K+  K+  ++ L  +FE IAR WH     +W+    
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  118  DKVLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQ  177
            D ++ ++E ++FP+IG+R I+ ++   LL ++R  E +   E   +++QR + V RYA+ 
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  178  SGIIRYNPALDMAGALTTVKRQHrpalelsrlpellsRIDGYKGQPVTRLAVMLNLLVFI  237
            +G   YNPA D+A+AL+T K+ H P L  + LP++L+ + GY G  +T+ A  + +L  +
Sbjct  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV  240

Query  238  RSSELRYARWSEIDIDNSMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAEL  297
            R+ ELR+ARW +ID++  +W IPAE              KM+ PH+VPLS QV+ ++ +L
Sbjct  241  RTQELRFARWEDIDFETKLWEIPAE------------VMKMKRPHIVPLSEQVIMLFKQL  288

Query  298  QTWAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQEVCGHGFRAMACSALIESGL-  356
            +  + ++ L+F G +DPRKPIS +++N+A+ ++GY     + GHGFR    + L E G+ 
Sbjct  289  EPISKHHPLVFIGRNDPRKPISKESINQAIELLGYKGR--LTGHGFRHTMSTILHEQGFN  346

Query  357  --WSRDAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDA  401
              W    +E Q++H ++N++R +Y H A  L+ RR M+QW AD++D+
Sbjct  347  SAW----IEMQLAHVDKNSIRDTYNH-ALYLDGRREMMQWYADYIDS  388

336) S4822 in NC_004741


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  290 bits (1087),  Expect = 7e-80, Method: Compositional matrix adjust.
 Identities = 170/407 (42%), Positives = 273/407 (68%), Gaps = 25/407 (6%)

Query  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60
            MALTD K+++AKP DK+YKL+DG+GM+LL++ NGS+YWR++YR+ GKEK L++GVYP+V+
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   LSEARTKRDEARKLISEGIDPCEQKRVKKVVPDLQL--SFEHIARRWHA-SNKQWAQSHS  117
            L++AR KR EARKL++ G DP E K+  K+  ++ L  +FE IAR WH     +W+    
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  118  DKVLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQ  177
            D ++ ++E ++FP+IG+R I+ ++   LL ++R  E +   E   +++QR + V RYA+ 
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  178  SGIIRYNPALDMAGALTTVKRQHrpalelsrlpellsRIDGYKGQPVTRLAVMLNLLVFI  237
            +G   YNPA D+A+AL+T K+ H P L  + LP++L+ + GY G  +T+ A  + +L  +
Sbjct  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV  240

Query  238  RSSELRYARWSEIDIDNSMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAEL  297
            R+ ELR+ARW +ID++  +W IPAE              KM+ PH+VPLS QV+ ++ +L
Sbjct  241  RTQELRFARWEDIDFETKLWEIPAE------------VMKMKRPHIVPLSEQVIMLFKQL  288

Query  298  QTWAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQEVCGHGFRAMACSALIESGL-  356
            +  + ++ L+F G +DPRKPIS +++N+A+ ++GY     + GHGFR    + L E G+ 
Sbjct  289  EPISKHHPLVFIGRNDPRKPISKESINQAIELLGYKGR--LTGHGFRHTMSTILHEQGFN  346

Query  357  --WSRDAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDA  401
              W    +E Q++H ++N++R +Y H A  L+ RR M+QW AD++D+
Sbjct  347  SAW----IEMQLAHVDKNSIRDTYNH-ALYLDGRREMMQWYADYIDS  388

337) SF2964 in NC_004337


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  290 bits (1087),  Expect = 7e-80, Method: Compositional matrix adjust.
 Identities = 170/407 (42%), Positives = 273/407 (68%), Gaps = 25/407 (6%)

Query  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60
            MALTD K+++AKP DK+YKL+DG+GM+LL++ NGS+YWR++YR+ GKEK L++GVYP+V+
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   LSEARTKRDEARKLISEGIDPCEQKRVKKVVPDLQL--SFEHIARRWHA-SNKQWAQSHS  117
            L++AR KR EARKL++ G DP E K+  K+  ++ L  +FE IAR WH     +W+    
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  118  DKVLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQ  177
            D ++ ++E ++FP+IG+R I+ ++   LL ++R  E +   E   +++QR + V RYA+ 
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  178  SGIIRYNPALDMAGALTTVKRQHrpalelsrlpellsRIDGYKGQPVTRLAVMLNLLVFI  237
            +G   YNPA D+A+AL+T K+ H P L  + LP++L+ + GY G  +T+ A  + +L  +
Sbjct  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV  240

Query  238  RSSELRYARWSEIDIDNSMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAEL  297
            R+ ELR+ARW +ID++  +W IPAE              KM+ PH+VPLS QV+ ++ +L
Sbjct  241  RTQELRFARWEDIDFETKLWEIPAE------------VMKMKRPHIVPLSEQVIMLFKQL  288

Query  298  QTWAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQEVCGHGFRAMACSALIESGL-  356
            +  + ++ L+F G +DPRKPIS +++N+A+ ++GY     + GHGFR    + L E G+ 
Sbjct  289  EPISKHHPLVFIGRNDPRKPISKESINQAIELLGYKGR--LTGHGFRHTMSTILHEQGFN  346

Query  357  --WSRDAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDA  401
              W    +E Q++H ++N++R +Y H A  L+ RR M+QW AD++D+
Sbjct  347  SAW----IEMQLAHVDKNSIRDTYNH-ALYLDGRREMMQWYADYIDS  388

338) KPN2242_01530 in NC_017540


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  289 bits (1083),  Expect = 1e-79, Method: Compositional matrix adjust.
 Identities = 173/407 (43%), Positives = 277/407 (69%), Gaps = 28/407 (6%)

Query  1    MALSDVKVRSAKPEAKAYKLTDGEGMVLLVHPNGSKYWRLRYRFGGKEKMLALGKYPEVS  60
            MAL+D+KV++AKP  K+YKL+DG GM LL++ NGSKYWR++YRF+GKEKML++G YP+V+
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   LadararrdearKLLANDVDPSENKKAVKVEQEQE-AITFEVVARDWHA-SNQKWSASHS  118
            LADAR +R EARKLLA + DP+E KK  K+ Q+     TFE +AR+WH    ++WS    
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  119  ARVLKSLEDNLFAVIGKRNIAELKTRDLLVPIKAVESSGRLEVAARLQQRTTTIMRYAVQ  178
              ++ ++E ++F+ IGKR IAE+K   LL +++ +E  G LE   +++QR   + RYA+ 
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  179  SGLIDYNPAQEIAGAVATAKRQHRAALELNRIPELLHRIDHYTGRPLTRLAVELTLLVFI  238
            +G  DYNPA ++A+A+AT+K+ H + L  N +P++L+ +  YTG  +T+ A ++ +L  +
Sbjct  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV  240

Query  239  RSSELRFARWSEVNFETAMWTIPGEREPLEGVKHSQRGSKMRTPHLVPLSRQALAILEKI  298
            R+ ELRFARW +++FET +W IP+E              KM+ PH+VPLS Q + ++ ++
Sbjct  241  RTQELRFARWEDIDFETKLWEIPAE------------VMKMKRPHIVPLSEQVIMLFKQL  288

Query  299  KSMNGNRELIFVGDHDPR----KNTVNKALRVMGYDTKVEVCGHGFRTMACSSLIESGL-  353
             +++ ++ L+F+G +DPR    K+++N+A+ ++GY  +  + GHGFR    + L E G+ 
Sbjct  289  EPISKHHPLVFIGRNDPRKPISKESINQAIELLGYKGR--LTGHGFRHTMSTILHEQGFN  346

Query  354  --WSKDAVERQMSHQERNTVRAAYIHKAEHLGERRLMLQWWADYLDA  398
              W    +E Q++H ++N++R +Y H A  L+ RR M+QW ADY+D+
Sbjct  347  SAW----IEMQLAHVDKNSIRDTYNH-ALYLDGRREMMQWYADYIDS  388

339) KPK_4978 in NC_011283


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  289 bits (1082),  Expect = 2e-79, Method: Compositional matrix adjust.
 Identities = 175/407 (43%), Positives = 281/407 (70%), Gaps = 24/407 (5%)

Query  1    MALSDVKVRSAKPEAKAYKLTDGEGMVLLVHPNGSKYWRLRYRFGGKEKMLALGKYPEVS  60
            MAL+D+KV++AKP  K+YKL+DG GM LL++ NGSKYWR++YRF+GKEKML++G YP+V+
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   LadararrdearKLLANGVDPSENKKAVKVEQEQE-AITFEVVARDWHA-SNQKWSASHS  118
            LADAR +R EARKLLA G DP+E KK  K+ Q+     TFE +AR+WH    ++WS    
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  119  ARVLKSLEDNLFAAIGKRNIADLKTRDLLVPIKAVESSGRLEVAARLQQRTTAIMRFAVQ  178
              ++ ++E ++F+ IGKR IA++K   LL +++ +E  G LE   +++QR   + R+A+ 
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  179  SGLIDYNPAQEIAGAVATAKRQHRAALELNRIPELLHRIDHYSGRlltqlaveltllvFI  238
            +G  DYNPA ++A+A+AT+K+ H + L  N +P++L+ +  Y+G ++T+ A ++ +L  +
Sbjct  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV  240

Query  239  RSSELRFARWSEVDFETAMWTIPGERELLDGVKHSQRGSKMRTPHLVPLSRQALAILEKI  298
            R+ ELRFARW ++DFET +W IP+E              KM+ PH+VPLS Q + ++ ++
Sbjct  241  RTQELRFARWEDIDFETKLWEIPAE------------VMKMKRPHIVPLSEQVIMLFKQL  288

Query  299  KSMNGNRELIFVGDHDPRKPMSENTVNKALRVMGYDTKTEVCGHGFRTMACSSLIESGL-  357
             +++ ++ L+F+G +DPRKP+S +++N+A+ ++GY  K  + GHGFR    + L E G+ 
Sbjct  289  EPISKHHPLVFIGRNDPRKPISKESINQAIELLGY--KGRLTGHGFRHTMSTILHEQGFN  346

Query  358  --WSRDAVERQMSHQERSSVRAAYIHKAEHLGERRLMLQWWADYLDA  402
              W    +E Q++H +++S+R +Y H A  L+ RR M+QW ADY+D+
Sbjct  347  SAW----IEMQLAHVDKNSIRDTYNH-ALYLDGRREMMQWYADYIDS  388

340) A1122_08715 in NC_017168


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  288 bits (1080),  Expect = 2e-79, Method: Compositional matrix adjust.
 Identities = 175/407 (43%), Positives = 275/407 (68%), Gaps = 24/407 (5%)

Query  1    MALSDVKVRTAKPEAKAYKLTDGEGMVLLVHPNGSKYWRLRYRFDGKEKMLALGKYPEIS  60
            MAL+D+KV+TAKP  K+YKL+DG GM LL++ NGSKYWR++YRF GKEKML++G YP+++
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   LadararrdearKQLANGVDPSESKKAVKVEQEQE-AITFEVVAREWHA-SNRQWSEAHS  118
            LADAR +R EARK LA G DP+E+KK  K+ Q+     TFE +AREWH     +WS    
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  119  ARVLKSLEDNLFQAIGKRNIADLGTRDLLPPIKAVEMAGRLQVASRLQQRTTAIMRYAVQ  178
              ++ ++E ++F  IGKR IA++    LL +++ +E  G L+   +++QR   + RYA+ 
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  179  SGLIDYNPAQEMAGAVATGKRKHRAALELNRVSELLHRIDYYSGRPLTRLAVELTLLVFI  238
            +G  DYNPA ++A+A+AT K+ H + L  N ++++L+ +  Y+G  +T+ A ++ +L  +
Sbjct  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV  240

Query  239  RSSELRFARWSEVDFETAMWTIPGEREPLEGVKHSHRGSKMRTPHLIPLSRQALAILEKI  298
            R+ ELRFARW ++DFET +W IP+E              KM+ PH++PLS Q + ++ ++
Sbjct  241  RTQELRFARWEDIDFETKLWEIPAE------------VMKMKRPHIVPLSEQVIMLFKQL  288

Query  299  KSMSGNRELIFIGDHDPRKPMSENTVNKALRVMGYDTKVEVCGHGFRTMACSSLIESGL-  357
             ++S ++ L+FIG +DPRKP+S +++N+A+ ++GY  +  + GHGFR    + L E G+ 
Sbjct  289  EPISKHHPLVFIGRNDPRKPISKESINQAIELLGYKGR--LTGHGFRHTMSTILHEQGFN  346

Query  358  --WSRDAVERQMSHQERNSVRAAYIHKAEHLDERRLMIQWWADYLDA  402
              W    +E Q++H ++NS+R +Y H A  LD RR M+QW ADY+D+
Sbjct  347  SAW----IEMQLAHVDKNSIRDTYNH-ALYLDGRREMMQWYADYIDS  388

341) YPA_2939 in NC_008150


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  288 bits (1080),  Expect = 2e-79, Method: Compositional matrix adjust.
 Identities = 175/407 (43%), Positives = 275/407 (68%), Gaps = 24/407 (5%)

Query  1    MALSDVKVRTAKPEAKAYKLTDGEGMVLLVHPNGSKYWRLRYRFDGKEKMLALGKYPEIS  60
            MAL+D+KV+TAKP  K+YKL+DG GM LL++ NGSKYWR++YRF GKEKML++G YP+++
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   LadararrdearKQLANGVDPSESKKAVKVEQEQE-AITFEVVAREWHA-SNRQWSEAHS  118
            LADAR +R EARK LA G DP+E+KK  K+ Q+     TFE +AREWH     +WS    
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  119  ARVLKSLEDNLFQAIGKRNIADLGTRDLLPPIKAVEMAGRLQVASRLQQRTTAIMRYAVQ  178
              ++ ++E ++F  IGKR IA++    LL +++ +E  G L+   +++QR   + RYA+ 
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  179  SGLIDYNPAQEMAGAVATGKRKHRAALELNRVSELLHRIDYYSGRPLTRLAVELTLLVFI  238
            +G  DYNPA ++A+A+AT K+ H + L  N ++++L+ +  Y+G  +T+ A ++ +L  +
Sbjct  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV  240

Query  239  RSSELRFARWSEVDFETAMWTIPGEREPLEGVKHSHRGSKMRTPHLIPLSRQALAILEKI  298
            R+ ELRFARW ++DFET +W IP+E              KM+ PH++PLS Q + ++ ++
Sbjct  241  RTQELRFARWEDIDFETKLWEIPAE------------VMKMKRPHIVPLSEQVIMLFKQL  288

Query  299  KSMSGNRELIFIGDHDPRKPMSENTVNKALRVMGYDTKVEVCGHGFRTMACSSLIESGL-  357
             ++S ++ L+FIG +DPRKP+S +++N+A+ ++GY  +  + GHGFR    + L E G+ 
Sbjct  289  EPISKHHPLVFIGRNDPRKPISKESINQAIELLGYKGR--LTGHGFRHTMSTILHEQGFN  346

Query  358  --WSRDAVERQMSHQERNSVRAAYIHKAEHLDERRLMIQWWADYLDA  402
              W    +E Q++H ++NS+R +Y H A  LD RR M+QW ADY+D+
Sbjct  347  SAW----IEMQLAHVDKNSIRDTYNH-ALYLDGRREMMQWYADYIDS  388

342) intB in NC_003143


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  288 bits (1080),  Expect = 2e-79, Method: Compositional matrix adjust.
 Identities = 175/407 (43%), Positives = 275/407 (68%), Gaps = 24/407 (5%)

Query  1    MALSDVKVRTAKPEAKAYKLTDGEGMVLLVHPNGSKYWRLRYRFDGKEKMLALGKYPEIS  60
            MAL+D+KV+TAKP  K+YKL+DG GM LL++ NGSKYWR++YRF GKEKML++G YP+++
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   LadararrdearKQLANGVDPSESKKAVKVEQEQE-AITFEVVAREWHA-SNRQWSEAHS  118
            LADAR +R EARK LA G DP+E+KK  K+ Q+     TFE +AREWH     +WS    
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  119  ARVLKSLEDNLFQAIGKRNIADLGTRDLLPPIKAVEMAGRLQVASRLQQRTTAIMRYAVQ  178
              ++ ++E ++F  IGKR IA++    LL +++ +E  G L+   +++QR   + RYA+ 
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  179  SGLIDYNPAQEMAGAVATGKRKHRAALELNRVSELLHRIDYYSGRPLTRLAVELTLLVFI  238
            +G  DYNPA ++A+A+AT K+ H + L  N ++++L+ +  Y+G  +T+ A ++ +L  +
Sbjct  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV  240

Query  239  RSSELRFARWSEVDFETAMWTIPGEREPLEGVKHSHRGSKMRTPHLIPLSRQALAILEKI  298
            R+ ELRFARW ++DFET +W IP+E              KM+ PH++PLS Q + ++ ++
Sbjct  241  RTQELRFARWEDIDFETKLWEIPAE------------VMKMKRPHIVPLSEQVIMLFKQL  288

Query  299  KSMSGNRELIFIGDHDPRKPMSENTVNKALRVMGYDTKVEVCGHGFRTMACSSLIESGL-  357
             ++S ++ L+FIG +DPRKP+S +++N+A+ ++GY  +  + GHGFR    + L E G+ 
Sbjct  289  EPISKHHPLVFIGRNDPRKPISKESINQAIELLGYKGR--LTGHGFRHTMSTILHEQGFN  346

Query  358  --WSRDAVERQMSHQERNSVRAAYIHKAEHLDERRLMIQWWADYLDA  402
              W    +E Q++H ++NS+R +Y H A  LD RR M+QW ADY+D+
Sbjct  347  SAW----IEMQLAHVDKNSIRDTYNH-ALYLDGRREMMQWYADYIDS  388

343) intB in NC_017154


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  288 bits (1080),  Expect = 2e-79, Method: Compositional matrix adjust.
 Identities = 175/407 (43%), Positives = 275/407 (68%), Gaps = 24/407 (5%)

Query  1    MALSDVKVRTAKPEAKAYKLTDGEGMVLLVHPNGSKYWRLRYRFDGKEKMLALGKYPEIS  60
            MAL+D+KV+TAKP  K+YKL+DG GM LL++ NGSKYWR++YRF GKEKML++G YP+++
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   LadararrdearKQLANGVDPSESKKAVKVEQEQE-AITFEVVAREWHA-SNRQWSEAHS  118
            LADAR +R EARK LA G DP+E+KK  K+ Q+     TFE +AREWH     +WS    
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  119  ARVLKSLEDNLFQAIGKRNIADLGTRDLLPPIKAVEMAGRLQVASRLQQRTTAIMRYAVQ  178
              ++ ++E ++F  IGKR IA++    LL +++ +E  G L+   +++QR   + RYA+ 
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  179  SGLIDYNPAQEMAGAVATGKRKHRAALELNRVSELLHRIDYYSGRPLTRLAVELTLLVFI  238
            +G  DYNPA ++A+A+AT K+ H + L  N ++++L+ +  Y+G  +T+ A ++ +L  +
Sbjct  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV  240

Query  239  RSSELRFARWSEVDFETAMWTIPGEREPLEGVKHSHRGSKMRTPHLIPLSRQALAILEKI  298
            R+ ELRFARW ++DFET +W IP+E              KM+ PH++PLS Q + ++ ++
Sbjct  241  RTQELRFARWEDIDFETKLWEIPAE------------VMKMKRPHIVPLSEQVIMLFKQL  288

Query  299  KSMSGNRELIFIGDHDPRKPMSENTVNKALRVMGYDTKVEVCGHGFRTMACSSLIESGL-  357
             ++S ++ L+FIG +DPRKP+S +++N+A+ ++GY  +  + GHGFR    + L E G+ 
Sbjct  289  EPISKHHPLVFIGRNDPRKPISKESINQAIELLGYKGR--LTGHGFRHTMSTILHEQGFN  346

Query  358  --WSRDAVERQMSHQERNSVRAAYIHKAEHLDERRLMIQWWADYLDA  402
              W    +E Q++H ++NS+R +Y H A  LD RR M+QW ADY+D+
Sbjct  347  SAW----IEMQLAHVDKNSIRDTYNH-ALYLDGRREMMQWYADYIDS  388

344) intB in NC_017160


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  288 bits (1080),  Expect = 2e-79, Method: Compositional matrix adjust.
 Identities = 175/407 (43%), Positives = 275/407 (68%), Gaps = 24/407 (5%)

Query  1    MALSDVKVRTAKPEAKAYKLTDGEGMVLLVHPNGSKYWRLRYRFDGKEKMLALGKYPEIS  60
            MAL+D+KV+TAKP  K+YKL+DG GM LL++ NGSKYWR++YRF GKEKML++G YP+++
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   LadararrdearKQLANGVDPSESKKAVKVEQEQE-AITFEVVAREWHA-SNRQWSEAHS  118
            LADAR +R EARK LA G DP+E+KK  K+ Q+     TFE +AREWH     +WS    
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  119  ARVLKSLEDNLFQAIGKRNIADLGTRDLLPPIKAVEMAGRLQVASRLQQRTTAIMRYAVQ  178
              ++ ++E ++F  IGKR IA++    LL +++ +E  G L+   +++QR   + RYA+ 
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  179  SGLIDYNPAQEMAGAVATGKRKHRAALELNRVSELLHRIDYYSGRPLTRLAVELTLLVFI  238
            +G  DYNPA ++A+A+AT K+ H + L  N ++++L+ +  Y+G  +T+ A ++ +L  +
Sbjct  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV  240

Query  239  RSSELRFARWSEVDFETAMWTIPGEREPLEGVKHSHRGSKMRTPHLIPLSRQALAILEKI  298
            R+ ELRFARW ++DFET +W IP+E              KM+ PH++PLS Q + ++ ++
Sbjct  241  RTQELRFARWEDIDFETKLWEIPAE------------VMKMKRPHIVPLSEQVIMLFKQL  288

Query  299  KSMSGNRELIFIGDHDPRKPMSENTVNKALRVMGYDTKVEVCGHGFRTMACSSLIESGL-  357
             ++S ++ L+FIG +DPRKP+S +++N+A+ ++GY  +  + GHGFR    + L E G+ 
Sbjct  289  EPISKHHPLVFIGRNDPRKPISKESINQAIELLGYKGR--LTGHGFRHTMSTILHEQGFN  346

Query  358  --WSRDAVERQMSHQERNSVRAAYIHKAEHLDERRLMIQWWADYLDA  402
              W    +E Q++H ++NS+R +Y H A  LD RR M+QW ADY+D+
Sbjct  347  SAW----IEMQLAHVDKNSIRDTYNH-ALYLDGRREMMQWYADYIDS  388

345) YPN_0651 in NC_008149


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  288 bits (1080),  Expect = 2e-79, Method: Compositional matrix adjust.
 Identities = 175/407 (43%), Positives = 275/407 (68%), Gaps = 24/407 (5%)

Query  1    MALSDVKVRTAKPEAKAYKLTDGEGMVLLVHPNGSKYWRLRYRFDGKEKMLALGKYPEIS  60
            MAL+D+KV+TAKP  K+YKL+DG GM LL++ NGSKYWR++YRF GKEKML++G YP+++
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   LadararrdearKQLANGVDPSESKKAVKVEQEQE-AITFEVVAREWHA-SNRQWSEAHS  118
            LADAR +R EARK LA G DP+E+KK  K+ Q+     TFE +AREWH     +WS    
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  119  ARVLKSLEDNLFQAIGKRNIADLGTRDLLPPIKAVEMAGRLQVASRLQQRTTAIMRYAVQ  178
              ++ ++E ++F  IGKR IA++    LL +++ +E  G L+   +++QR   + RYA+ 
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  179  SGLIDYNPAQEMAGAVATGKRKHRAALELNRVSELLHRIDYYSGRPLTRLAVELTLLVFI  238
            +G  DYNPA ++A+A+AT K+ H + L  N ++++L+ +  Y+G  +T+ A ++ +L  +
Sbjct  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV  240

Query  239  RSSELRFARWSEVDFETAMWTIPGEREPLEGVKHSHRGSKMRTPHLIPLSRQALAILEKI  298
            R+ ELRFARW ++DFET +W IP+E              KM+ PH++PLS Q + ++ ++
Sbjct  241  RTQELRFARWEDIDFETKLWEIPAE------------VMKMKRPHIVPLSEQVIMLFKQL  288

Query  299  KSMSGNRELIFIGDHDPRKPMSENTVNKALRVMGYDTKVEVCGHGFRTMACSSLIESGL-  357
             ++S ++ L+FIG +DPRKP+S +++N+A+ ++GY  +  + GHGFR    + L E G+ 
Sbjct  289  EPISKHHPLVFIGRNDPRKPISKESINQAIELLGYKGR--LTGHGFRHTMSTILHEQGFN  346

Query  358  --WSRDAVERQMSHQERNSVRAAYIHKAEHLDERRLMIQWWADYLDA  402
              W    +E Q++H ++NS+R +Y H A  LD RR M+QW ADY+D+
Sbjct  347  SAW----IEMQLAHVDKNSIRDTYNH-ALYLDGRREMMQWYADYIDS  388

346) intB in NC_014029


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  288 bits (1080),  Expect = 2e-79, Method: Compositional matrix adjust.
 Identities = 175/407 (43%), Positives = 275/407 (68%), Gaps = 24/407 (5%)

Query  1    MALSDVKVRTAKPEAKAYKLTDGEGMVLLVHPNGSKYWRLRYRFDGKEKMLALGKYPEIS  60
            MAL+D+KV+TAKP  K+YKL+DG GM LL++ NGSKYWR++YRF GKEKML++G YP+++
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   LadararrdearKQLANGVDPSESKKAVKVEQEQE-AITFEVVAREWHA-SNRQWSEAHS  118
            LADAR +R EARK LA G DP+E+KK  K+ Q+     TFE +AREWH     +WS    
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  119  ARVLKSLEDNLFQAIGKRNIADLGTRDLLPPIKAVEMAGRLQVASRLQQRTTAIMRYAVQ  178
              ++ ++E ++F  IGKR IA++    LL +++ +E  G L+   +++QR   + RYA+ 
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  179  SGLIDYNPAQEMAGAVATGKRKHRAALELNRVSELLHRIDYYSGRPLTRLAVELTLLVFI  238
            +G  DYNPA ++A+A+AT K+ H + L  N ++++L+ +  Y+G  +T+ A ++ +L  +
Sbjct  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV  240

Query  239  RSSELRFARWSEVDFETAMWTIPGEREPLEGVKHSHRGSKMRTPHLIPLSRQALAILEKI  298
            R+ ELRFARW ++DFET +W IP+E              KM+ PH++PLS Q + ++ ++
Sbjct  241  RTQELRFARWEDIDFETKLWEIPAE------------VMKMKRPHIVPLSEQVIMLFKQL  288

Query  299  KSMSGNRELIFIGDHDPRKPMSENTVNKALRVMGYDTKVEVCGHGFRTMACSSLIESGL-  357
             ++S ++ L+FIG +DPRKP+S +++N+A+ ++GY  +  + GHGFR    + L E G+ 
Sbjct  289  EPISKHHPLVFIGRNDPRKPISKESINQAIELLGYKGR--LTGHGFRHTMSTILHEQGFN  346

Query  358  --WSRDAVERQMSHQERNSVRAAYIHKAEHLDERRLMIQWWADYLDA  402
              W    +E Q++H ++NS+R +Y H A  LD RR M+QW ADY+D+
Sbjct  347  SAW----IEMQLAHVDKNSIRDTYNH-ALYLDGRREMMQWYADYIDS  388

347) S70_13465 in NC_017731


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  288 bits (1079),  Expect = 3e-79, Method: Compositional matrix adjust.
 Identities = 172/407 (43%), Positives = 272/407 (67%), Gaps = 25/407 (6%)

Query  1    MALTDAKIRAAKPDVKSYKLTDGAGLHLLVHTNGSKYWRLRYRHLGKEKTLALGLYPDVS  60
            MALTD K+++AKP  K+YKL+DG+G+ LL++TNGSKYWR++YR  GKEK L++G+YPDV+
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   LSEARLKRDEARKLIADGIDPCEQKRVAKAASDANL--SFETIARQWHA-SNKKWSESHS  117
            L++AR KR EARKL+A G DP E K+  K A + +L  +FE+IAR+WH     +WS    
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  118  EKVLKSLESHVFPYIGLRDITTLKTPDLLIPIRAAESKEIYEIAARLQQRIAAVMRYAVQ  177
            + ++ ++E ++FPYIG R I+ +K   LL ++R  E +   E   +++QR + V RYA+ 
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  178  SGIIGYNPAIDTAGAVTTVQRQHRPALNLDRLPELIARIDAYKGQPVTRLAVMLNLLVFI  237
            +G  +YNPA D A+A++T ++ H P L  + LP+++  + +Y G  +T+ A  + +L  +
Sbjct  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV  240

Query  238  RSSELRYARWSEIDFDKALWTIPAERKPIPGVKFSHRGAKMRTPHLVPLSHQAITILKEI  297
            R+ ELR+ARW +IDF+  LW IPAE              KM+ PH+VPLS+Q I ++K++
Sbjct  241  RTQELRFARWEDIDFETKLWEIPAE------------VMKMKRPHIVPLSEQVIMLFKQL  288

Query  298  WAWTGEHELILTGAHNPFKPMSENTVNKALRVMGYDTKTEICGHGFRTMACSSLVESGL-  356
             + + +H L++ G ++P KP+S +++N+A+ ++GY  K  + GHGFR    + L E G+ 
Sbjct  289  EPISKHHPLVFIGRNDPRKPISKESINQAIELLGY--KGRLTGHGFRHTMSTILHEQGFN  346

Query  357  --WSKDAVERQMSHQERNSVRAAYIHKAEHIDQRRLMVQWWADYLDA  401
              W    +E Q++H ++NS+R +Y H A  +D RR M+QW ADY+D+
Sbjct  347  SAW----IEMQLAHVDKNSIRDTYNH-ALYLDGRREMMQWYADYIDS  388

348) YpAngola_A4051 in NC_010159


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  288 bits (1079),  Expect = 3e-79, Method: Compositional matrix adjust.
 Identities = 174/407 (43%), Positives = 275/407 (68%), Gaps = 24/407 (5%)

Query  1    MALSDVKVRTAKPEAKAYKLTDGEGMVLLVHPNGSKYWRLRYRFDGKEKMLALGKYPEIS  60
            MAL+D+KV+TAKP  K+YKL+DG GM LL++ NGSKYWR++YRF GKEKML++G YP+++
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   LadararrdearKQLANGVDPSESKKAVKVEQEQE-AITFEVVAREWHA-SNRQWSEAHS  118
            LADAR +R EARK LA G DP+E+KK  K+ Q+     TFE +AREWH     +WS    
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  119  ARVLKSLEDNLFQAIGKRNIADLGTRDLLPPIKAVEMAGRLQVASRLQQRTTAIMRYAVQ  178
              ++ ++E ++F  IGKR IA++    LL +++ +E  G L+   +++QR   + RYA+ 
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  179  SGLIDYNPAQEMAGAVSTGKRKHRAALELNRVSELLHRIDYYSGRPLTRLAVELTLLVFI  238
            +G  DYNPA ++A+A++T K+ H + L  N ++++L+ +  Y+G  +T+ A ++ +L  +
Sbjct  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV  240

Query  239  RSSELRFARWSEVDFETAMWTIPGEREPLEGVKHSHRGSKMRTPHLIPLSRQALAILEKI  298
            R+ ELRFARW ++DFET +W IP+E              KM+ PH++PLS Q + ++ ++
Sbjct  241  RTQELRFARWEDIDFETKLWEIPAE------------VMKMKRPHIVPLSEQVIMLFKQL  288

Query  299  KSMSGNRELIFIGDHDPRKPMSENTVNKALRVMGYDTKVEVCGHGFRTMACSSLIESGL-  357
             ++S ++ L+FIG +DPRKP+S +++N+A+ ++GY  +  + GHGFR    + L E G+ 
Sbjct  289  EPISKHHPLVFIGRNDPRKPISKESINQAIELLGYKGR--LTGHGFRHTMSTILHEQGFN  346

Query  358  --WSRDAVERQMSHQERNSVRAAYIHKAEHLDERRLMIQWWADYLDA  402
              W    +E Q++H ++NS+R +Y H A  LD RR M+QW ADY+D+
Sbjct  347  SAW----IEMQLAHVDKNSIRDTYNH-ALYLDGRREMMQWYADYIDS  388

349) YpsIP31758_3540 in NC_009708


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  288 bits (1079),  Expect = 3e-79, Method: Compositional matrix adjust.
 Identities = 172/407 (43%), Positives = 279/407 (69%), Gaps = 24/407 (5%)

Query  1    MALSDVKVRSAKPEEKAYKLTDGDGMVLLVHPNGSKYWRLRYRFGGKEKMLALGIYPEIS  60
            MAL+D+KV++AKP +K+YKL+DG+GM LL++ NGSKYWR++YRF+GKEKML++G+YP+++
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   LadararrdearKQLANGVDPSESKKAVKVEQEQE-AITFEVVAREWHA-SNRQWSEAHS  118
            LADAR +R EARK LA G DP+E+KK  K+ Q+     TFE +AREWH     +WS    
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  119  ARVLKSLEDNLFQSIGKRNITDLGTRDLLPPIKAVEMSGRLEVASRLQQRTTAIMRYAVQ  178
              ++ ++E ++F  IGKR I+++    LL +++ +E  G LE   +++QR   + RYA+ 
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  179  SGLIDYNPAQEMAGAVATGKRKHRAALELNRVSELLHRIDYYSGRPLTRLAVELTLLVFI  238
            +G  DYNPA ++A+A+AT K+ H + L  N ++++L+ +  Y+G  +T+ A ++ +L  +
Sbjct  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV  240

Query  239  RSSELRFARWSEVDFETAMWTIPGEREPLEGVKHSHRGSKMRTPHLVPLSRQALAILEKI  298
            R+ ELRFARW ++DFET +W IP+E              KM+ PH+VPLS Q + ++ ++
Sbjct  241  RTQELRFARWEDIDFETKLWEIPAE------------VMKMKRPHIVPLSEQVIMLFKQL  288

Query  299  KSMSGNRELIFIGDHDPRKPMSENTVNKALRVMGYDTKVDVCGHGFRTMACSSLIESGL-  357
             ++S ++ L+FIG +DPRKP+S +++N+A+ ++GY  ++   GHGFR    + L E G+ 
Sbjct  289  EPISKHHPLVFIGRNDPRKPISKESINQAIELLGYKGRLT--GHGFRHTMSTILHEQGFN  346

Query  358  --WSRDAVERQMSHQERNSVRAAYIHKAEHLDERKLMIQWWADFFGG  402
              W    +E Q++H ++NS+R +Y H A  LD R+ M+QW AD++++
Sbjct  347  SAW----IEMQLAHVDKNSIRDTYNH-ALYLDGRREMMQWYADYIDS  388

350) intB in NC_005810


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  288 bits (1078),  Expect = 4e-79, Method: Compositional matrix adjust.
 Identities = 175/407 (43%), Positives = 275/407 (68%), Gaps = 24/407 (5%)

Query  13   MALSDVKVRTAKPEAKAYKLTDGEGMVLLVHPNGSKYWRLRYRFDGKEKMLALGKYPEIS  72
            MAL+D+KV+TAKP  K+YKL+DG GM LL++ NGSKYWR++YRF GKEKML++G YP+++
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  73   LadararrdearKQLANGVDPSESKKAVKVEQEQE-AITFEVVAREWHA-SNRQWSEAHS  130
            LADAR +R EARK LA G DP+E+KK  K+ Q+     TFE +AREWH     +WS    
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  131  ARVLKSLEDNLFQAIGKRNIADLGTRDLLPPIKAVEMAGRLQVASRLQQRTTAIMRYAVQ  190
              ++ ++E ++F  IGKR IA++    LL +++ +E  G L+   +++QR   + RYA+ 
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  191  SGLIDYNPAQEMAGAVATGKRKHRAALELNRVSELLHRIDYYSGRPLTRLAVELTLLVFI  250
            +G  DYNPA ++A+A+AT K+ H + L  N ++++L+ +  Y+G  +T+ A ++ +L  +
Sbjct  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV  240

Query  251  RSSELRFARWSEVDFETAMWTIPGEREPLEGVKHSHRGSKMRTPHLIPLSRQALAILEKI  310
            R+ ELRFARW ++DFET +W IP+E              KM+ PH++PLS Q + ++ ++
Sbjct  241  RTQELRFARWEDIDFETKLWEIPAE------------VMKMKRPHIVPLSEQVIMLFKQL  288

Query  311  KSMSGNRELIFIGDHDPRKPMSENTVNKALRVMGYDTKVEVCGHGFRTMACSSLIESGL-  369
             ++S ++ L+FIG +DPRKP+S +++N+A+ ++GY  +  + GHGFR    + L E G+ 
Sbjct  289  EPISKHHPLVFIGRNDPRKPISKESINQAIELLGYKGR--LTGHGFRHTMSTILHEQGFN  346

Query  370  --WSRDAVERQMSHQERNSVRAAYIHKAEHLDERRLMIQWWADYLDA  414
              W    +E Q++H ++NS+R +Y H A  LD RR M+QW ADY+D+
Sbjct  347  SAW----IEMQLAHVDKNSIRDTYNH-ALYLDGRREMMQWYADYIDS  388

351) intB in NC_004088


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  288 bits (1078),  Expect = 4e-79, Method: Compositional matrix adjust.
 Identities = 175/407 (43%), Positives = 275/407 (68%), Gaps = 24/407 (5%)

Query  13   MALSDVKVRTAKPEAKAYKLTDGEGMVLLVHPNGSKYWRLRYRFDGKEKMLALGKYPEIS  72
            MAL+D+KV+TAKP  K+YKL+DG GM LL++ NGSKYWR++YRF GKEKML++G YP+++
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  73   LadararrdearKQLANGVDPSESKKAVKVEQEQE-AITFEVVAREWHA-SNRQWSEAHS  130
            LADAR +R EARK LA G DP+E+KK  K+ Q+     TFE +AREWH     +WS    
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  131  ARVLKSLEDNLFQAIGKRNIADLGTRDLLPPIKAVEMAGRLQVASRLQQRTTAIMRYAVQ  190
              ++ ++E ++F  IGKR IA++    LL +++ +E  G L+   +++QR   + RYA+ 
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  191  SGLIDYNPAQEMAGAVATGKRKHRAALELNRVSELLHRIDYYSGRPLTRLAVELTLLVFI  250
            +G  DYNPA ++A+A+AT K+ H + L  N ++++L+ +  Y+G  +T+ A ++ +L  +
Sbjct  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV  240

Query  251  RSSELRFARWSEVDFETAMWTIPGEREPLEGVKHSHRGSKMRTPHLIPLSRQALAILEKI  310
            R+ ELRFARW ++DFET +W IP+E              KM+ PH++PLS Q + ++ ++
Sbjct  241  RTQELRFARWEDIDFETKLWEIPAE------------VMKMKRPHIVPLSEQVIMLFKQL  288

Query  311  KSMSGNRELIFIGDHDPRKPMSENTVNKALRVMGYDTKVEVCGHGFRTMACSSLIESGL-  369
             ++S ++ L+FIG +DPRKP+S +++N+A+ ++GY  +  + GHGFR    + L E G+ 
Sbjct  289  EPISKHHPLVFIGRNDPRKPISKESINQAIELLGYKGR--LTGHGFRHTMSTILHEQGFN  346

Query  370  --WSRDAVERQMSHQERNSVRAAYIHKAEHLDERRLMIQWWADYLDA  414
              W    +E Q++H ++NS+R +Y H A  LD RR M+QW ADY+D+
Sbjct  347  SAW----IEMQLAHVDKNSIRDTYNH-ALYLDGRREMMQWYADYIDS  388

352) YpsIP31758_0809 in NC_009708


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  288 bits (1077),  Expect = 4e-79, Method: Compositional matrix adjust.
 Identities = 174/407 (43%), Positives = 264/407 (65%), Gaps = 25/407 (6%)

Query  1    MALTDVKVRSAKTEDKPYKLTDSDGMHLLVHPNGSKYWRLRYRYLGKENTLALGVYPALS  60
            MALTD+KV++AK  DKPYKL+D++GM LL++ NGSKYWR++YR+ GKE+ L++GVYP ++
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   LSEARAKRDAARKLIAEGSDPSEVKRAKKALPDAT--QTFEVIARRWHA-ANKQWSEQHS  117
            L++AR KR  ARKL+A G+DP+E K+  K   + +  +TFE IAR WH     +WS +  
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  118  AKVLKNLEMYLFPVNGTRDIASLRTPDLLIPIRVAENAGFLEVSARLLQRTTAIMRYAVQ  177
              ++  +E  +FP  G R IA ++   LL ++R  E+ G LE   ++ QR   + RYA+ 
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  178  CGIIDYNPAQDMVGALTTVKRVHRPALELNRIPELLSRIEGYKGQPLTRLAVMLNLFVFI  237
             G  DYNPA D+ +AL+T K+VH P L  N +P++L+ + GY G  +T+ A  + ++  +
Sbjct  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV  240

Query  238  RSSELRYARWSEIDTERALWTIPAEREPIPGVKFSHRGSKMRTTHLVPLSQQSLAMLEEL  297
            R+ ELR+ARW +ID E  LW IPAE              KM+  H+VPLS+Q + ++ +L
Sbjct  241  RTQELRFARWEDIDFETKLWEIPAE------------VMKMKRPHIVPLSEQVIMLFKQL  288

Query  298  RLSGGESGLIFPGDHDPRKPISENTINKALRLMGYETKTEVCGHGFRAMACSALIESGL-  356
               + +  L+F G +DPRKPIS ++IN+A+ L+GY  K  + GHGFR    + L E G+ 
Sbjct  289  EPISKHHPLVFIGRNDPRKPISKESINQAIELLGY--KGRLTGHGFRHTMSTILHEQGFN  346

Query  357  --WSRDAVERQMSHQERNGVRAAYIHKAEFLDERRLMLQWWADFLDT  401
              W    +E Q++H ++N++R +Y H A +LD RR M+QW AD++D+
Sbjct  347  SAW----IEMQLAHVDKNSIRDTYNH-ALYLDGRREMMQWYADYIDS  388

353) Tbd_0943 in NC_007404


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  287 bits (1076),  Expect = 5e-79, Method: Compositional matrix adjust.
 Identities = 174/393 (45%), Positives = 262/393 (67%), Gaps = 7/393 (1%)

Query  2    LTDMKVRQAKPGPNVQKLSDSQGLFLHISPSGGKWWRLAYRYTGKQKLLSLGTYPAVSLA  61
            LTD+KV+ AKP  +  KL+D+ G++L I+ +G+K WR+ YR++GK+K+LS+G YP V+LA
Sbjct  3    LTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVTLA  62

Query  62   DARQRRDEAKKLLAHGVDPAENRKATKQARQDRASNSFEAVAREWHAKFSSTWSANHSDR  121
            DAR++R EA+KLLA G DP+E +K  K A+Q    N+FEA+AREWH   +  WS    D 
Sbjct  63   DAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYRDE  122

Query  122  IIRRLENDIFPWLGDKPIADITPPTLLAALRRIEERGAVETAHRAMQNCGQVFRYSVATG  181
            II  +E+DIFP +G +PIA+I P  LL ALR++E RGA+E  ++  Q CG+VFRY++ TG
Sbjct  123  IIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIVTG  182

Query  182  RAERDPSQDLKGALPPVAKSHFKSITDPVQIGVLLRNIDGYSGGPVVRSALRLAPLIFVR  241
            RA+ +P+ DL +AL+   K HF  +T   ++  +L ++ GY+G+ + ++A ++  L  VR
Sbjct  183  RADYNPAPDLASALATPKKVHFPFLTAN-ELPHFLNDLAGYTGSIITKTATQIIMLTGVR  241

Query  242  PGELRHAEWAHFDLGAAEWRYT--VSKTNTEHIVPLSRQAISVLEELQPLTGHKRYVFPA  299
              ELR A W ++D+ +  W     V K +  HIVPLS Q I ++ +L+P++ H   VF +
Sbjct  242  TQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHPLVFIG  301

Query  300  NRGEGRPMSENTVNAALRSLGYDKETLTGHGFRAMARTLLDEVLGFRPDIIEHQLAHAVR  359
              +  +P+S +++N A+  LGY K  LTGHGFR    T+L+E  GF +  IE QLAH  +
Sbjct  302  RNDPRKPISKESINQAIELLGY-KGRLTGHGFRHTMSTILHEQ-GFNSAWIEMQLAHVDK  359

Query  360  DPLGRAYNRTTHLPERRKMMQGW-ADYLDELKA  391
            +++  +YN++  L  RR MMQ W ADY+D L +
Sbjct  360  NSIRDTYNHALYLDGRREMMQ-WYADYIDSLSS  391

354) S70_06120 in NC_017731


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  287 bits (1076),  Expect = 5e-79, Method: Compositional matrix adjust.
 Identities = 170/407 (42%), Positives = 272/407 (67%), Gaps = 25/407 (6%)

Query  1    MALTDAKIRAAKPDVKSYKLTDGAGLHLLVHSNGSKYWRLRYRHLGKEKTLALGLYPDVS  60
            MALTD K+++AKP  K+YKL+DG+G+ LL+++NGSKYWR++YR  GKEK L++G+YPDV+
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   LSEARLKRDEARKLIADGIDPCEQKRVAKAASDANL--SFETIARQWHA-SNKKWSESHS  117
            L++AR KR EARKL+A G DP E K+  K A + +L  +FE+IAR+WH     +WS    
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  118  EKVLKSLESHVFPYIGLRDITTLKTPDLLIPIRAAESKEIYEIAARLQQRIAAVMRYAVQ  177
            + ++ ++E ++FPYIG R I+ +K   LL ++R  E +   E   +++QR + V RYA+ 
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  178  SGIIGYNPAIDTAGAVTTVQRQHRPALNLDRLPELITRIDAYKGQPVTRLAVMLNLLVFI  237
            +G  +YNPA D A+A++T ++ H P L  + LP+++  + +Y G  +T+ A  + +L  +
Sbjct  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV  240

Query  238  RSSELRYARWSEIDFDKALWTIPAQRKPIPGVKFSHRGAKMRTPHLVPLSHQAITILKEI  297
            R+ ELR+ARW +IDF+  LW IPA+              KM+ PH+VPLS+Q I ++K++
Sbjct  241  RTQELRFARWEDIDFETKLWEIPAE------------VMKMKRPHIVPLSEQVIMLFKQL  288

Query  298  WAWTGEHELILTGAHNPFKPMSENTVNKALRVMGYDTKTEICGHGFRTMACSSLVESGL-  356
             + + +H L++ G ++P KP+S +++N+A+ ++GY  K  + GHGFR    + L E G+ 
Sbjct  289  EPISKHHPLVFIGRNDPRKPISKESINQAIELLGY--KGRLTGHGFRHTMSTILHEQGFN  346

Query  357  --WSKDAVERQMSHQERNSVRAAYIHKAEHIDQRRLMVQWWADYLDA  401
              W    +E Q++H ++NS+R +Y H A  +D RR M+QW ADY+D+
Sbjct  347  SAW----IEMQLAHVDKNSIRDTYNH-ALYLDGRREMMQWYADYIDS  388

355) YPK_3676 in NC_010465


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  287 bits (1076),  Expect = 6e-79, Method: Compositional matrix adjust.
 Identities = 177/407 (44%), Positives = 276/407 (68%), Gaps = 24/407 (5%)

Query  1    MALSDVKVRTAKPEAKAYKLTDGEGMVLLVHPNGSKYWRLRYRFGGKEKMLALGKYPEIS  60
            MAL+D+KV+TAKP  K+YKL+DG GM LL++ NGSKYWR++YRF+GKEKML++G YP+++
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   LadararrdearKLLANGVDPSESKKAVKVEQEQE-AITFEVVAREWHA-SNRQWSEAHS  118
            LADAR +R EARKLLA G DP+E+KK  K+ Q+     TFE +AREWH     +WS    
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  119  ARVLKSLEDNLFQAIGKRNIADLGTRDLLPPIKAVEMSGRLEVASRLQQRTTAIMRYAVQ  178
              ++ ++E ++F  IGKR IA++    LL +++ +E  G LE   +++QR   + RYA+ 
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  179  SGLIDYNPAQEMAGAVATGKRKHRAALELNRVSELLHRIDYYSGRPLTRLAVELTLLVFI  238
            +G  DYNPA ++A+A+AT K+ H + L  N ++++L+ +  Y+G  +T+ A ++ +L  +
Sbjct  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV  240

Query  239  RSSELRFARWSEVDFETAMWTIPGEREPLEGVKHSHRGSKMRTPHLVPLSRQALAILGKI  298
            R+ ELRFARW ++DFET +W IP+E              KM+ PH+VPLS Q + ++ ++
Sbjct  241  RTQELRFARWEDIDFETKLWEIPAE------------VMKMKRPHIVPLSEQVIMLFKQL  288

Query  299  KSMSGNRELIFIGDHDPRKPMSENTVNKALRVMGYDTKVEVCGHGFRTMACSSLIESGL-  357
             ++S ++ L+FIG +DPRKP+S +++N+A+ ++GY  +  + GHGFR    + L E G+ 
Sbjct  289  EPISKHHPLVFIGRNDPRKPISKESINQAIELLGYKGR--LTGHGFRHTMSTILHEQGFN  346

Query  358  --WSRDAVERQMSHQERNSVRAAYIHKAEHLDERRLMIQWWADDLDA  402
              W    +E Q++H ++NS+R +Y H A  LD RR M+QW AD +D+
Sbjct  347  SAW----IEMQLAHVDKNSIRDTYNH-ALYLDGRREMMQWYADYIDS  388

356) SFxv_4606 in NC_017328


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  287 bits (1074),  Expect = 7e-79, Method: Compositional matrix adjust.
 Identities = 171/399 (43%), Positives = 271/399 (68%), Gaps = 24/399 (6%)

Query  1    MALSDVKVRSAKPEAKAYKLTDGEGMVLLVHPNGSKYWRLRYRFGGKEKMLALGKYPEVS  60
            MAL+D+KV++AKP  K+YKL+DG GM LL++ NGSKYWR++YRF+GKEKML++G YP+V+
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   LadararrdearKLLANGVDPSENKKAVKVEQEQE-AITFEVVARDWHA-SNQKWSASHS  118
            LADAR +R EARKLLA G DP+E KK  K+ Q+     TFE +AR+WH    ++WS    
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  119  ARVLKSLEDNLFTAIGKRNIAELKTRDLLVPIKAVESSGRLEVAARLQQRTTAIMRFAVQ  178
              ++ ++E ++F  IGKR IAE+K   LL +++ +E  G LE   +++QR   + R+A+ 
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  179  SGLIDYNPAQEIAGAVATAKRQHRAALELNRIPELLHRIDHYSGRPLTRLAVELTLLVFI  238
            +G  DYNPA ++A+A+AT+K+ H + L  N +P++L+ +  Y+G  +T+ A ++ +L  +
Sbjct  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV  240

Query  239  RSSELRFARWSEIDFETAMWTIPGEREQLEGVKHSQRGSKMRTPHLVPLSRQALSILEKI  298
            R+ ELRFARW +IDFET +W IP+E              KM+ PH+VPLS Q + ++ ++
Sbjct  241  RTQELRFARWEDIDFETKLWEIPAE------------VMKMKRPHIVPLSEQVIMLFKQL  288

Query  299  KSMSGNRELIFVGDHDPRKPMSENTVNKALRVMGYDTKVEVCGHGFRTMACSSLIESGL-  357
             ++S ++ L+F+G +DPRKP+S +++N+A+ ++GY  +  + GHGFR    + L E G+ 
Sbjct  289  EPISKHHPLVFIGRNDPRKPISKESINQAIELLGYKGR--LTGHGFRHTMSTILHEQGFN  346

Query  358  --WSRDAVERQMSHQERSSVRAAYIHKAEHLGERRLMFE  394
              W    +E Q++H +++S+R +Y H A  L+ RR M +
Sbjct  347  SAW----IEMQLAHVDKNSIRDTYNH-ALYLDGRREMMQ  380

357) S4839 in NC_004741


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  287 bits (1074),  Expect = 7e-79, Method: Compositional matrix adjust.
 Identities = 171/399 (43%), Positives = 271/399 (68%), Gaps = 24/399 (6%)

Query  1    MALSDVKVRSAKPEAKAYKLTDGEGMVLLVHPNGSKYWRLRYRFGGKEKMLALGKYPEVS  60
            MAL+D+KV++AKP  K+YKL+DG GM LL++ NGSKYWR++YRF+GKEKML++G YP+V+
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   LadararrdearKLLANGVDPSENKKAVKVEQEQE-AITFEVVARDWHA-SNQKWSASHS  118
            LADAR +R EARKLLA G DP+E KK  K+ Q+     TFE +AR+WH    ++WS    
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  119  ARVLKSLEDNLFTAIGKRNIAELKTRDLLVPIKAVESSGRLEVAARLQQRTTAIMRFAVQ  178
              ++ ++E ++F  IGKR IAE+K   LL +++ +E  G LE   +++QR   + R+A+ 
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  179  SGLIDYNPAQEIAGAVATAKRQHRAALELNRIPELLHRIDHYSGRPLTRLAVELTLLVFI  238
            +G  DYNPA ++A+A+AT+K+ H + L  N +P++L+ +  Y+G  +T+ A ++ +L  +
Sbjct  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV  240

Query  239  RSSELRFARWSEIDFETAMWTIPGEREQLEGVKHSQRGSKMRTPHLVPLSRQALSILEKI  298
            R+ ELRFARW +IDFET +W IP+E              KM+ PH+VPLS Q + ++ ++
Sbjct  241  RTQELRFARWEDIDFETKLWEIPAE------------VMKMKRPHIVPLSEQVIMLFKQL  288

Query  299  KSMSGNRELIFVGDHDPRKPMSENTVNKALRVMGYDTKVEVCGHGFRTMACSSLIESGL-  357
             ++S ++ L+F+G +DPRKP+S +++N+A+ ++GY  +  + GHGFR    + L E G+ 
Sbjct  289  EPISKHHPLVFIGRNDPRKPISKESINQAIELLGYKGR--LTGHGFRHTMSTILHEQGFN  346

Query  358  --WSRDAVERQMSHQERSSVRAAYIHKAEHLGERRLMFE  394
              W    +E Q++H +++S+R +Y H A  L+ RR M +
Sbjct  347  SAW----IEMQLAHVDKNSIRDTYNH-ALYLDGRREMMQ  380

358) SF4224 in NC_004337


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  287 bits (1074),  Expect = 7e-79, Method: Compositional matrix adjust.
 Identities = 171/399 (43%), Positives = 271/399 (68%), Gaps = 24/399 (6%)

Query  1    MALSDVKVRSAKPEAKAYKLTDGEGMVLLVHPNGSKYWRLRYRFGGKEKMLALGKYPEVS  60
            MAL+D+KV++AKP  K+YKL+DG GM LL++ NGSKYWR++YRF+GKEKML++G YP+V+
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   LadararrdearKLLANGVDPSENKKAVKVEQEQE-AITFEVVARDWHA-SNQKWSASHS  118
            LADAR +R EARKLLA G DP+E KK  K+ Q+     TFE +AR+WH    ++WS    
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  119  ARVLKSLEDNLFTAIGKRNIAELKTRDLLVPIKAVESSGRLEVAARLQQRTTAIMRFAVQ  178
              ++ ++E ++F  IGKR IAE+K   LL +++ +E  G LE   +++QR   + R+A+ 
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  179  SGLIDYNPAQEIAGAVATAKRQHRAALELNRIPELLHRIDHYSGRPLTRLAVELTLLVFI  238
            +G  DYNPA ++A+A+AT+K+ H + L  N +P++L+ +  Y+G  +T+ A ++ +L  +
Sbjct  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV  240

Query  239  RSSELRFARWSEIDFETAMWTIPGEREQLEGVKHSQRGSKMRTPHLVPLSRQALSILEKI  298
            R+ ELRFARW +IDFET +W IP+E              KM+ PH+VPLS Q + ++ ++
Sbjct  241  RTQELRFARWEDIDFETKLWEIPAE------------VMKMKRPHIVPLSEQVIMLFKQL  288

Query  299  KSMSGNRELIFVGDHDPRKPMSENTVNKALRVMGYDTKVEVCGHGFRTMACSSLIESGL-  357
             ++S ++ L+F+G +DPRKP+S +++N+A+ ++GY  +  + GHGFR    + L E G+ 
Sbjct  289  EPISKHHPLVFIGRNDPRKPISKESINQAIELLGYKGR--LTGHGFRHTMSTILHEQGFN  346

Query  358  --WSRDAVERQMSHQERSSVRAAYIHKAEHLGERRLMFE  394
              W    +E Q++H +++S+R +Y H A  L+ RR M +
Sbjct  347  SAW----IEMQLAHVDKNSIRDTYNH-ALYLDGRREMMQ  380

359) AHML_14825 in NC_021290


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  287 bits (1073),  Expect = 9e-79, Method: Compositional matrix adjust.
 Identities = 183/388 (48%), Positives = 269/388 (70%), Gaps = 1/388 (0%)

Query  1    MPLSDTAARQAKFTGKQQKLSDEKGLFLLITSSG-KYWRLKFRFGGKEKVLALGVYPEVS  59
            M+L+D   + AK  +K  KL+D  G++LLI ++G KYWR+K+RF+GKEK+L++GVYP+V+
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  60   lkearvkreearrllaDGIDPSLARKQSKVASRLASENSFEVIAREWHQGQLARWSPGHA  119
            L +AR KR EAR+LLA G DP+ A+K+ K+A +++  N+FE IAREWHQ +  RWS    
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  120  QRVIESLEADAFPELGLVPVAELTAPIMLDALRKIEARGATETAGRVLQRISSVMRYAIQ  179
            + +I+++E D FP +G  P+AE+ +  +L+ALRK+E RGA E   +V QR + V RYAI 
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  180  TGRVSYNPAQDLKGALRATKQEHRPALPRADLPEFYRRLAAEPLNPATRLAIHLLMLTMT  239
            TGR  YNPA DL +AL + K+ H P L   +LP+F   LA+   +  T+ A +++MLT  
Sbjct  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV  240

Query  240  RPGEVRFARWDEFDMARAEWRIPAERMKMRAPHIVPLSRQALAVLEELRLISGHCELLFP  299
            R  E+RFARW+++D     W IPAE MKM+ PHIVPLS Q + ++ +L  IS H  L+F 
Sbjct  241  RTQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHPLVFI  300

Query  300  SERKLTDPMSENTLSYAMGRMGYKGIATPHGFRALASTILNEEGFDPDVIERQLAHAERN  359
            +      P+S ++++ A+  +GYKG  T HGFR   STIL+E+GF++  IE QLAH ++N
Sbjct  301  GRNDPRKPISKESINQAIELLGYKGRLTGHGFRHTMSTILHEQGFNSAWIEMQLAHVDKN  360

Query  360  KVRAAYHRAEYLDDRRKLLQWLADFYES  387
             +R +Y++A YLD+RR ++QW AD+ +S
Sbjct  361  SIRDTYNHALYLDGRREMMQWYADYIDS  388

360) SFV_4227 in NC_008258


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  287 bits (1073),  Expect = 9e-79, Method: Compositional matrix adjust.
 Identities = 171/399 (43%), Positives = 270/399 (68%), Gaps = 24/399 (6%)

Query  1    MALSDVKVRSAKPEAKAYKLTDGEGMVLLVHPNGSKYWRLRYRFDGKEKMLALGKYPEVS  60
            MAL+D+KV++AKP  K+YKL+DG GM LL++ NGSKYWR++YRF GKEKML++G YP+V+
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   LadararrdearKLLANGVDPSENKKAVKVEQEQE-AITFEVVARDWHA-SNQKWSASHS  118
            LADAR +R EARKLLA G DP+E KK  K+ Q+     TFE +AR+WH    ++WS    
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  119  ARVLKSLEDNLFTAIGKRNIAELKTRDLLVPIKAVESSGRLEVAARLQQRTTAIMRFAVQ  178
              ++ ++E ++F  IGKR IAE+K   LL +++ +E  G LE   +++QR   + R+A+ 
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  179  SGLIDYNPAQEIAGAVATAKRQHRAALELNRIPELLHRIDHYSGRPLTRLAVELTLLVFI  238
            +G  DYNPA ++A+A+AT+K+ H + L  N +P++L+ +  Y+G  +T+ A ++ +L  +
Sbjct  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV  240

Query  239  RSSELRFARWSEIDFETAMWTIPGEREQLEGVKHSQRGSKMRTPHLVPLSRQALSILEKI  298
            R+ ELRFARW +IDFET +W IP+E              KM+ PH+VPLS Q + ++ ++
Sbjct  241  RTQELRFARWEDIDFETKLWEIPAE------------VMKMKRPHIVPLSEQVIMLFKQL  288

Query  299  KSMSGNRELIFVGDHDPRKPMSENTVNKALRVMGYDTKVEVCGHGFRTMACSSLIESGL-  357
             ++S ++ L+F+G +DPRKP+S +++N+A+ ++GY  +  + GHGFR    + L E G+ 
Sbjct  289  EPISKHHPLVFIGRNDPRKPISKESINQAIELLGYKGR--LTGHGFRHTMSTILHEQGFN  346

Query  358  --WSRDAVERQMSHQERSSVRAAYIHKAEHLGERRLMFE  394
              W    +E Q++H +++S+R +Y H A  L+ RR M +
Sbjct  347  SAW----IEMQLAHVDKNSIRDTYNH-ALYLDGRREMMQ  380

361) Xaut_3444 in NC_009720


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  286 bits (1069),  Expect = 2e-78, Method: Compositional matrix adjust.
 Identities = 179/396 (46%), Positives = 272/396 (69%), Gaps = 11/396 (2%)

Query  1    MPLTDTAARSAKGREKPYKLADGGGLYLLVNPDGARYWRLNYRFAGKQKTLALGTYPITS  60
            M+LTD   ++AK ++KPYKLADGGG+YLL+N +G++YWR++YRFAGK+K L++G YP  +
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   LADARKGRETAKEQLAARIDPSearraekraarLHSSRIFEVVAQEWFAAKLPGWVPSYS  120
            LADAR  R  A+  LAA  DP+EA++ EK A ++     FE +A+EW   K   W   Y 
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  121  DRLLSRLEADIYPTLGHRPIADIEPPEVLEVIRKVETRGAIELAKREMQVIGQIFHFAIA  180
            D ++  +E DI+P +G RPIA+I P  +LE +RK+E RGA+E  ++  Q  G++F++AI 
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  181  SGRAKRDPTQDLRGALKSPGRQKHHRALPREDLPDFLKALDAYDGEPMTKLALKLMVLTF  240
            +GRA  +P+ DL +AL +P ++ H   L  ++LP+FL+ L +Y G  +TK A ++++LT 
Sbjct  181  TGRADYNPAPDLASALATP-KKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTG  239

Query  241  VRTTELRAARWSEFEGLDGPEPLWRIPPERMKMRFEHLVPLSPQAVAVLQELRPLAGRSP  300
            VRT ELR ARW   E++D    LW IP+E MKM+  H+VPLS Q + ++++L P++ + P
Sbjct  240  VRTQELRFARW---EDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHP  296

Query  301  QLF---PSPSKEGFMSNNTMLFAMYRMGYHGRATVHGFRGVASTWLNEAGYHPDWIERQL  357
             +F     P K   +S++++  A+  +GY GR T HGFR   ST L+E G+++ WIE QL
Sbjct  297  LVFIGRNDPRKP--ISKESINQAIELLGYKGRLTGHGFRHTMSTILHEQGFNSAWIEMQL  354

Query  358  AHDERNEVRGAYNSAQYLTGRRQMMCDW-ANFLDGL  392
            AH ++N +R++YN A YL GRR+MM +W A+++D+L
Sbjct  355  AHVDKNSIRDTYNHALYLDGRREMM-QWYADYIDSL  389

362) YPDSF_3248 in NC_009381


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  286 bits (1070),  Expect = 2e-78, Method: Compositional matrix adjust.
 Identities = 174/407 (43%), Positives = 274/407 (68%), Gaps = 24/407 (5%)

Query  1    MALSDVKVRTAKPEAKAYKLTDGEGMVLLVHPNGSKYWRLRHRFDGKEKMLALGKYPEIS  60
            MAL+D+KV+TAKP  K+YKL+DG GM LL++ NGSKYWR++ RF GKEKML++G YP+++
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   LadararrdearKQLANGVDPSESKKAVKVEQEQE-AITFEVVAREWHA-SNRQWSEAHS  118
            LADAR +R EARK LA G DP+E+KK  K+ Q+     TFE +AREWH     +WS    
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  119  ARVLKSLEDNLFQAIGKRNIADLGTRDLLPPIKAVEMAGRLQVASRLQQRTTAIMRYAVQ  178
              ++ ++E ++F  IGKR IA++    LL +++ +E  G L+   +++QR   + RYA+ 
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  179  SGLIDYNPAQEMAGAVATGKRKHRAALELNRVSELLHRIDYYSGRPLTRLAVELTLLVFI  238
            +G  DYNPA ++A+A+AT K+ H + L  N ++++L+ +  Y+G  +T+ A ++ +L  +
Sbjct  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV  240

Query  239  RSSELRFARWSEVDFETAMWTIPGEREPLEGVKHSHRGSKMRTPHLIPLSRQALAILEKI  298
            R+ ELRFARW ++DFET +W IP+E              KM+ PH++PLS Q + ++ ++
Sbjct  241  RTQELRFARWEDIDFETKLWEIPAE------------VMKMKRPHIVPLSEQVIMLFKQL  288

Query  299  KSMSGNRELIFIGDHDPRKPMSENTVNKALRVMGYDTKVEVCGHGFRTMACSSLIESGL-  357
             ++S ++ L+FIG +DPRKP+S +++N+A+ ++GY  +  + GHGFR    + L E G+ 
Sbjct  289  EPISKHHPLVFIGRNDPRKPISKESINQAIELLGYKGR--LTGHGFRHTMSTILHEQGFN  346

Query  358  --WSRDAVERQMSHQERNSVRAAYIHKAEHLDERRLMIQWWADYLDA  402
              W    +E Q++H ++NS+R +Y H A  LD RR M+QW ADY+D+
Sbjct  347  SAW----IEMQLAHVDKNSIRDTYNH-ALYLDGRREMMQWYADYIDS  388

363) Mpe_A1087 in NC_008825


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  285 bits (1065),  Expect = 3e-78, Method: Compositional matrix adjust.
 Identities = 176/390 (46%), Positives = 266/390 (69%), Gaps = 5/390 (1%)

Query  1    MKLTDLKLRTLTQSGKHF---DGGGLYLEVTAAGGRYWRMKYRHGGKEKRLAFGVYPEVT  57
            M LTD+K++T    +K +   DGGG+YL + + G++YWRMKYR +GKEK L++GVYP+VT
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  58   LraardrrdearrVLDQGGDPGELRKaakaqaaheaSNTFEAVARDWLTHQADSWEAVTL  117
            L  AR++R EAR++L  GGDPGE +K  K        NTFEA+AR+W   +AD W     
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  118  ARIKAAFKADVFPQLGARPMAQIKPREVATVVKAIEARGAGDMAARVLQRIRAVFRFAVV  177
              I  +F  D+FP +G RP+A+IKP  +   ++ +E RGA +   +V QR   VFR+A+V
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  178  HERIDSNPMLDLQPGELLKPRQVRHRAALADRDLPVFLEKLAAYDGDVSTSAALRLLMLT  237
              R D NP  DL ++ L  P++V H + L+  +LP FL+ LA+Y G + T +A +++MLT
Sbjct  181  TGRADYNPAPDL-ASALATPKKV-HFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLT  238

Query  238  AVRPGELRGARWDEIDMDAAEWRIPAERMKMRSPHVVPLSRQALDVLQLMQPLSGERELV  297
            +VR  ELR ARW++ID ++  W IPAE MKM+ PH+VPLS Q + +++ ++P+S ++ LV
Sbjct  239  GVRTQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHPLV  298

Query  298  FPSPYYPGKPLSENTLNSALARMGYKGLATAHGFRALFSTVANESGHSPDVIERQLAHVE  357
            F +   P KP+S +++N A+  +GYKG  T+HGFR   ST+ +E G ++  IE QLAHV+
Sbjct  299  FIGRNDPRKPISKESINQAIELLGYKGRLTGHGFRHTMSTILHEQGFNSAWIEMQLAHVD  358

Query  358  RNAVRAAYHRSTYLKDRAQLMQWWADYLDG  387
            +N++R +Y+++ YL +R ++MQW ADY+D+
Sbjct  359  KNSIRDTYNHALYLDGRREMMQWYADYIDS  388

364) Reut_A2365 in NC_007347


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  285 bits (1067),  Expect = 3e-78, Method: Compositional matrix adjust.
 Identities = 173/391 (45%), Positives = 270/391 (70%), Gaps = 3/391 (0%)

Query  7    PLTDTKIRNAKPRERSYKLFDGGGLYLEVMTDGRKLWRFKYVRPSGSESRLGFGVYPAVS  66
            +LTD K++ AKP++++YKL DGGG+YL + T+G K WR KY R +G E  L++GVYP V+
Sbjct  2    ALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKY-RFAGKEKMLSIGVYPDVT  60

Query  67   LAQARTQRETARGIVADGRDPGAVKQEERRAARIAAGNSFEAVARDWHNTQKSSWNDVYA  126
            LA+AR +R  AR ++A G DPG  K+EE+ A +++  N+FEA+AR+WH+ +   W+  Y 
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  127  GKVLASLENDVFPVLGSTPIADIKAPAILDLLRKVEARGVRDTTKRILQRMRAVFQYGII  186
            + ++ ++E+D+FP +G  PIA+IK+  +L+ LRK+E RG  +  +++ QR   VF+Y+I+
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  187  YGLCDRNPAADIDSAAALKSESVQHQARVSPLELPQLLRDIDAYEGDAVTRLALQFMTLT  246
             G  D NPA+D+  A+AL +    H + +++ ELP++L D+ +Y G  +T+ A Q++ LT
Sbjct  181  TGRADYNPAPDL--ASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLT  238

Query  247  FVRTTEMIQARWVEIDEAKAEWRIPADRMKMRDPHVVPLSTQALAVLAELRAINGHRDLV  306
             VRT E+  ARW +ID     W IPA+ MKM+ PH+VPLS Q + ++ +L +I+ H+ LV
Sbjct  239  GVRTQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHPLV  298

Query  307  FYSPRGKSGHISNNTMLYALYRMGYHSRMTGHGFRGLASTALNELGFRPDVIERQLAHVE  366
            F +  +    IS++++  A+  +GY +R+TGHGFR   ST L+E GF +  IE QLAHV+
Sbjct  299  FIGRNDPRKPISKESINQAIELLGYKGRLTGHGFRHTMSTILHEQGFNSAWIEMQLAHVD  358

Query  367  RNKVRAAYNHAQYLPERRQMMQSWADHVHAL  397
            +N +R +YNHA YL  RR+MMQ  AD +++L
Sbjct  359  KNSIRDTYNHALYLDGRREMMQWYADYIDSL  389

365) intB in NC_017265


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  285 bits (1065),  Expect = 4e-78, Method: Compositional matrix adjust.
 Identities = 174/407 (43%), Positives = 274/407 (68%), Gaps = 24/407 (5%)

Query  1    MALSDVKVRTAKPEAKAYKLTDGEGMVLLVHPNGSKYWRLRYRFDGKEKMLALGKYPEIS  60
            MAL+D+KV+TAKP  K+YKL+DG GM LL++ NGSKYWR++YRF GKEKML++G YP+++
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   LadararrdearKQLANGVDPSESKKAVKVEQEQE-AITFEVVAREWYA-SNRQWSEAHS  118
            LADAR +R EARK LA G DP+E+KK  K+ Q+     TFE +AREW      +WS    
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  119  ARVLKSLEDNLFQAIGKRNIADLGTRDLLPPIKAVEMAGRLQVASRLQQRTTAIMRYAVQ  178
              ++ ++E ++F  IGKR IA++    LL +++ +E  G L+   +++QR   + RYA+ 
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  179  SGLIDYNPAQEMAGAVATGKRKHRAALELNRVSELLHRIDYYSGRPLTRLAVELTLLVFI  238
            +G  DYNPA ++A+A+AT K+ H + L  N ++++L+ +  Y+G  +T+ A ++ +L  +
Sbjct  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV  240

Query  239  RSSELRFARWSEVDFETAMWTIPGEREPLEGVKHSHRGSKMRTPHLIPLSRQALAILEKI  298
            R+ ELRFARW ++DFET +W IP+E              KM+ PH++PLS Q + ++ ++
Sbjct  241  RTQELRFARWEDIDFETKLWEIPAE------------VMKMKRPHIVPLSEQVIMLFKQL  288

Query  299  KSMSGNRELIFIGDHDPRKPMSENTVNKALRVMGYDTKVEVCGHGFRTMACSSLIESGL-  357
             ++S ++ L+FIG +DPRKP+S +++N+A+ ++GY  +  + GHGFR    + L E G+ 
Sbjct  289  EPISKHHPLVFIGRNDPRKPISKESINQAIELLGYKGR--LTGHGFRHTMSTILHEQGFN  346

Query  358  --WSRDAVERQMSHQERNSVRAAYIHKAEHLDERRLMIQWWADYLDA  402
              W    +E Q++H ++NS+R +Y H A  LD RR M+QW ADY+D+
Sbjct  347  SAW----IEMQLAHVDKNSIRDTYNH-ALYLDGRREMMQWYADYIDS  388

366) NAL212_1009 in NC_015222


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  284 bits (1064),  Expect = 4e-78, Method: Compositional matrix adjust.
 Identities = 177/390 (46%), Positives = 260/390 (67%), Gaps = 3/390 (0%)

Query  2    LTDTAIRNAKPRDKFYKVSDSGGLYLLVKATG-KYWRMDYRFVGKRKTLAIGVYPTVSLV  60
            LTD  ++ AKP+DK YK++D+GG+YLL+++ G KYWRM YRF GK K L+IGVYP V+L 
Sbjct  3    LTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVTLA  62

Query  61   AARKKRDEARELLGKHIDPSLAKAINKRIVLTAAENTFKAVALEWHTKTSKSWAESTANN  120
             AR KR EAR LL+   DP+ AK  +K     +  NTF A+A EWH   +  W+    ++
Sbjct  63   DAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYRDE  122

Query  121  IKRYLEKDIFPWLGNRAIKDIGAPDLLAVLRKIESRGAHEKAQRCREYAGRVFRYAIATG  180
            I   +EKDIFP +G+R+I +I +  LL  LRK+E RGA EK ++ R+  G VFRYAI TG
Sbjct  123  IIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIVTG  182

Query  181  RAERDPSGDLRGALTPVKVKHHASITEPKAIGALLRSIWGFNGSYITKCALQLAPLVFVR  240
            RA+ +P+ DL +AL+  K K H ++  ++ +  +L  + G+ GS ITK A Q+  L  VR
Sbjct  183  RADYNPAPDLASALATPK-KVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGVR  241

Query  241  PGELRQAEWQEIDFDKQEWRIAGNKMKMGEAHIIPLSPQVIEILQSIHPLTGDGQYIFPS  300
              ELR A W++IDF+ + W I+++ MKM  +HI+PLS QVI +++ ++P++ +   +F +
Sbjct  242  TQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHPLVFIG  301

Query  301  IRSSARPMSENTINAALRRMGYEKDEMTGHGFRSMASTLLHEHGWPHEAIERQLAHAERN  360
               + +P+S ++IN A+  +GY K+ +TGHGFR   ST+LHE+G     IE QLAH ++N
Sbjct  302  RNDPRKPISKESINQAIELLGY-KGRLTGHGFRHTMSTILHEQGFNSAWIEMQLAHVDKN  360

Query  361  KVVAAYNYAEHLPKRKEMMRWWADYLDELA  390
             +  +YN A  L  R+EMM+W ADY+D L+
Sbjct  361  SIRDTYNHALYLDGRREMMQWYADYIDSLS  390

367) SYN_01916 in NC_007759


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  284 bits (1062),  Expect = 6e-78, Method: Compositional matrix adjust.
 Identities = 172/395 (44%), Positives = 263/395 (67%), Gaps = 6/395 (1%)

Query  16   IPLTDMKVQKARPQDKPIALFDGGGLYLLITPSGGKLWRFKYRFDKKEKKLALGSYPEIS  75
            ++LTD+KV+ A+P+DKP  L DGGG+YLLI  +G+K WR KYRF  KEK L++G YP+++
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  76   LQDARRKREDARRLLANNIDPDSIRKAQKQAKTEE-TETFEVIGREWHTKFTPTWTPGHA  134
            L DAR KR +AR+LLA   DP+  +K +K A+     +TFE I+REWH   +  W+    
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  135  VTIMSRLERDLFPWIGKRPINQIKAPELLAVLRRVESRGALESAHRIRTIAGQVFRYAVA  194
              I+  +E+D+FP IGKRPI +IK+  LL  LR++E RGALE  +++R   G+VFRYA+ 
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  195  TGRAERDPAADLKGALPQPRERHHAALTEPKEVAPLLRALDGYQGHFVVKCALRLAPMFF  254
            TGRA+ +PA+DL +AL+ P+  H + LT ++E++ +L  L GY G ++ K A ++  +  
Sbjct  181  TGRADYNPAPDLASALATPKKVHFPFLT-ANELPHFLNDLAGYTGSIITKTATQIIMLTG  239

Query  255  TRPGELRNAEWSEIDLDEAVWNIPAHKMKMKQAHIVPLCRQAVEILTELKEVTGPSRYVF  314
             R  ELR A W +ID++  +W+IPA+ MKMK++HIVPL  Q + ++ +L  ++     VF
Sbjct  240  VRTQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHPLVF  299

Query  315  PSGRSFARPMSNNAVNAALRRMGYDRETMTGHGFRAMARTILDEVLHVRPDYIEHQLAHA  374
             +     +P+S++++N A+  +GY +  +TGHGFR    TIL+E     +  IE QLAH 
Sbjct  300  IGRNDPRKPISKESINQAIELLGY-KGRLTGHGFRHTMSTILHEQ-GFNSAWIEMQLAHV  357

Query  375  VRDPNGRAYNRTAHLEERRKMMQIW-ADYLDGLKA  408
             +++   +YN++  L+ RR MMQ W ADY+D+L +
Sbjct  358  DKNSIRDTYNHALYLDGRREMMQ-WYADYIDSLSS  391

368) Ppro_2300 in NC_008609


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  284 bits (1062),  Expect = 6e-78, Method: Compositional matrix adjust.
 Identities = 171/398 (43%), Positives = 273/398 (69%), Gaps = 7/398 (1%)

Query  7    PLSDLQVRNAKPKEKQVTLFDGGGLYLLITPTGGKLWRLKYSLFGKEKLLALGTYPEISL  66
            +L+D++V+ AKPK+K   L DGGG+YLLI   G+K WR+KY + GKEK+L++G YP+++L
Sbjct  2    ALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVTL  61

Query  67   ADARQRREDARKQVANGIDPGEVKKAQKVSSGEGDENSFEVIAREWHGKFLLNK-SESYR  125
            ADAR++R +ARK +A G DPGE KK +K++   +  N+FE IAREWH ++  ++ S  YR
Sbjct  62   ADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWH-QLKADRWSLRYR  120

Query  126  DKMLSNFERDVFPWIGRVAVKNLKAPELLSALRRIEGRGALETAHRTRSACSQVLRYAVA  185
            D ++  FE+D+FP IG+ ++ ++K+  LL ALR++E RGALE  ++ R  C++V+RYA+ 
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  186  TGRAERDCASDLIGALPPYKKGHRAALTDPKEVAPLLRAIDDYQGTFPVKCALKLAPLLF  245
            TGRA+ + A+DL +AL+  KK H + LT ++E++ +L  + +Y G++  K A ++  L  
Sbjct  181  TGRADYNPAPDLASALATPKKVHFPFLT-ANELPHFLNDLAGYTGSIITKTATQIIMLTG  239

Query  246  VRPGELRKAEWSEVDFKATEWRIPGDKMKMKNDHIVPLASQAVEILKELYPLTGHSKFLF  305
            VR  ELR A W ++DF +  W IP++ MKMK  HIVPL+ Q + ++K+L P++ H  ++F
Sbjct  240  VRTQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHPLVF  299

Query  306  PSPRSPLRPMSDNAILSALRRMGFEKDEMSGHGFRAMARTILDEVLHVRPDFIEHQLAHA  365
             +   P +P+S ++I  A+  +G+ K+ ++GHGFR    TIL+E     +  IE QLAH 
Sbjct  300  IGRNDPRKPISKESINQAIELLGY-KGRLTGHGFRHTMSTILHEQ-GFNSAWIEMQLAHV  357

Query  366  VRDPNGRAYNRTAHLAERKKMMQAW-ADYLDDLKTRNG  402
             +++   +YN++  L  R+ MMQ W ADY+D L +R++
Sbjct  358  DKNSIRDTYNHALYLDGRREMMQ-WYADYIDSLSSRES  394

369) SARI_03082 in NC_010067


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  284 bits (1062),  Expect = 6e-78, Method: Compositional matrix adjust.
 Identities = 175/407 (43%), Positives = 272/407 (67%), Gaps = 24/407 (5%)

Query  1    MALTDTKVRSAKPEEKEYSLVDGDGMFLLVKPNGSRYWRFRFRFGGKQHLMAFGVYPDVS  60
            MALTD KV++AKP +K Y L DG+GM+LL++ NGS+YWR ++RF+GK+ ++++GVYPDV+
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   LADarkkreearrLVAAGIDPREHKRAVKEEQAKEI-ITFEKVAREW-LVTNQKWSEDHA  118
            LADAR KR EAR+L+AAG DP E K+  K  Q   +  TFE +AREW  +  ++WS    
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  119  NRVKKSLEDNIFPAIGTRNIAELGTRDLLIPIKAVETSGRLEVASRLQQRTTAIMRYAVQ  178
            + +  ++E +IFP IG R IAE+    LL +++ +E  G LE   +++QR   + RYA+ 
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  179  SGVIDYNPAQERAGAVASSNRQHRPALELKRIPELLEKIDGYIGRPLTRWATELTLLIFI  238
            +G  DYNPA + A+A+A++++ H P L  + +P++L+ + GY G  +T+ AT++ +L  +
Sbjct  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV  240

Query  239  RSSELCFARWSEIDFETSMWTIPPEREPIPGVKHSQRGSKMRTPHLVPLSKQALAILKQI  298
            R+ EL FARW +IDFET +W IP+E              KM+ PH+VPLS Q + ++KQ+
Sbjct  241  RTQELRFARWEDIDFETKLWEIPAE------------VMKMKRPHIVPLSEQVIMLFKQL  288

Query  299  KQFCGEHELIFIGDHDPRKPMSENTVNSALRVMGYDTKVEVCGHGFRTMACSSLIESGL-  357
              +  +H L+FIG +DPRKP+S +++N A+ ++GY  +  + GHGFR    + L E G+ 
Sbjct  289  EPISKHHPLVFIGRNDPRKPISKESINQAIELLGYKGR--LTGHGFRHTMSTILHEQGFN  346

Query  358  --WSKDAVERQMSHMEHNSVRAAYIHKAEHLDERKLMLQWWADFLDA  402
              W    +E Q++H++ NS+R +Y H A  LD R+ M+QW AD++D+
Sbjct  347  SAW----IEMQLAHVDKNSIRDTYNH-ALYLDGRREMMQWYADYIDS  388

370) Dd586_0881 in NC_013592


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  283 bits (1059),  Expect = 1e-77, Method: Compositional matrix adjust.
 Identities = 173/407 (43%), Positives = 269/407 (67%), Gaps = 25/407 (6%)

Query  1    MPLTDTAIRNAKPLDKPYKLSDAQGLYLLIKPNGSKLWHLKYRFGGKEKKLAFGAYPTAS  60
            M+LTD  ++ AKP DKPYKL+D+ G+YLLI+ NGSK W++KYRF+GKEK L++G YP  +
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   LATARKLREEARAVLCAGADPGVKKQQDKQARKNG--NTFETVSRQWVAANI-RWTEAHA  117
            LA AR  R EAR +L AG+DPG  K+++K A++ +  NTFE+++R+W   +  RW+    
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  118  AKVLRSLELHVFPLIGKTPLTDLKTADLLIPLRVAEKKGCLETAARIQQRTTVIMRYAVQ  177
              ++ ++E ++FP IGK P++++K   LL +LR  EK+G LE   +++QR   + RYA+ 
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  178  EGLIASNPANDLCGAITTPPKNHYPAlplerlpellerIEGYSGRLLTRLAVQLNLLIFI  237
             G    NPA DL +A++TP K H+P L  + LP++L+ + GY+G ++T+ A Q+ +L  +
Sbjct  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV  240

Query  238  RSSELRFARWTEIDLDNAMWTLPAQREPITGVRHSERGAKMKTPHLVPLSKQAVTVLKQL  297
            R+ ELRFARW +ID++  +W +PA+              KMK PH+VPLS Q + ++KQL
Sbjct  241  RTQELRFARWEDIDFETKLWEIPAE------------VMKMKRPHIVPLSEQVIMLFKQL  288

Query  298  KLLSGNGDLLFPGDHDARKPMSENTINKALRTMGYDTQADICGHGFRTIACSALIESG--  355
              +S +  L+F G +D+RKP+S ++IN+A+  +GY  +  + GHGFR    + L E G  
Sbjct  289  EPISKHHPLVFIGRNDPRKPISKESINQAIELLGYKGR--LTGHGFRHTMSTILHEQGFN  346

Query  356  -RWSKDAVERQMSHQERNHVRAAYIHKAEHLDERTQMMQWWSDYLDA  401
              W    +E Q++H ++N +R +Y H A  LD R +MMQW +DY+D+
Sbjct  347  SAW----IEMQLAHVDKNSIRDTYNH-ALYLDGRREMMQWYADYIDS  388

371) KN400_0440 in NC_017454


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  283 bits (1061),  Expect = 8e-78, Method: Compositional matrix adjust.
 Identities = 171/396 (44%), Positives = 266/396 (68%), Gaps = 5/396 (1%)

Query  6    IPLSALKIDKAKPQEKEVKLYDGGGLFLLITPSGGKLWHLKYRYGGKEKKLALGAYPLVS  65
            ++L+ +K+  AKP++K  KL DGGG++LLI  +G+K W++KYR++GKEK L++G YP V+
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  66   LEGARQRREDAKKLLANGVDPGEMKKVLKSAAKDKAANTFEVVAREWHHKFSSAGKWSPT  125
            L +AR++R +A+KLLA G DPGE KK  K A +    NTFE +AREWH+    A++WS  
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQ--LKADRWSLR  118

Query  126  HAADILHRLEKDIFPPLGARPISEIKPLDLLRVLERIASRGALDTAHRLRHHCGMIFRYA  185
               +I++ +EKDIFP +G RPI+EIKP+ LL  L ++  RGAL+  +++R++CG +FRYA
Sbjct  119  YRDEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYA  178

Query  186  VVTERAERDVAADLRGALPPVKNGHHAAPTTPQSLLPLLRAIDVYEGSYIVKCALQLLPL  245
            +VT RA+ + A+DL +AL+  K+ H +  T+ + L  +L  +  Y GS I K A Q++ L
Sbjct  179  IVTGRADYNPAPDLASALATPKKVHFPFLTANE-LPHFLNDLAGYTGSIITKTATQIIML  237

Query  246  FFCRPGELRAAEWTEFDFDKAIWEIPATRMKMKQPHIVPLSKQAIAILESLQSLTGSGKY  305
               R  ELR A W ++DF+  +WEIPA  MKMK+PHIVPLS Q I ++  L++++     
Sbjct  238  TGVRTQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHPL  297

Query  306  LFPCQRSTQRCMSDNAYNAALRRMGFTKDEATAHGFRASARTILDEVLRIPVVLIEHQLS  365
            +F  +   ++ +S ++ N A+  +G+ K+  T+HGFR +  TIL+E   +    IE QL+
Sbjct  298  VFIGRNDPRKPISKESINQAIELLGY-KGRLTGHGFRHTMSTILHEQ-GFNSAWIEMQLA  355

Query  366  HSVRDPLGRAYNRTSHLDERKKMMQQWADYLDGLKC  401
            H  ++++  +YN++  LD R+ MMQ  ADY+D+L  
Sbjct  356  HVDKNSIRDTYNHALYLDGRREMMQWYADYIDSLSS  391

372) intB in NC_009485


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  282 bits (1055),  Expect = 2e-77, Method: Compositional matrix adjust.
 Identities = 178/397 (45%), Positives = 258/397 (65%), Gaps = 10/397 (2%)

Query  1    MPLTDTKCRNAKGQIKSRKLSDGGGLHLLITPDGAKYWRLAYRWHGKQRTLALGVYPAVG  60
            M+LTD K + AK + K+ KL+DGGG+ LLI  +G+KYWR+ YR  GK++ L++GVYP V 
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   LIEARASRDDAKRSIAADIDPSIVKRERKRAAKIATGNTFEAVAREWHENWKDARSPYYA  120
            L +AR  R +A++ +AA+ DP+  K+E K A +++  NTFEA+AREWH+   D +S  Y 
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  121  AQILRRLEADAFPAIGRRSIAALEPPELLDMLRKVEKRGVNETARRLKQLVGQIFRFAIV  180
             +I+  +E D FP IG+R+IA + P  LL+ LRK+EKRG  E  R+++Q  G++FR+AIV
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  181  TGRAKRDPSVDLKDALRATGEPQRHRAMPLSELPTFLQKLESYSGEQQTKLALKLVTLTF  240
            TGRA  +P+ DL  AL AT    +   +  +ELP FL+ L +Y+G   TK A +++ LT 
Sbjct  181  TGRADYNPAPDLASAL-ATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTG  239

Query  241  LRTTELRAGKWNELENLDENSALWRIPAERMKMRLEHLVPLSRQAVAALRELRTLSGGSP  300
            +RT ELR ++W++++    ++ LW IPAE MKM+  H+VPLS Q +  +++L  +S   P
Sbjct  240  VRTQELRFARWEDIDF---ETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHP  296

Query  301  NIF---PSPGKGDCMSSNTMLYALYRMGYHGRATTHGFRAVASTILNETNLFNRDWIERQ  357
             +F     P K     S      L  +GY GR T HGFR   STIL+E   FN  WIE Q
Sbjct  297  LVFIGRNDPRKPISKESINQAIEL--LGYKGRLTGHGFRHTMSTILHEQG-FNSAWIEMQ  353

Query  358  LSHVERNEVRRAYNAAEWMPDRRRMMQWWADHITALA  394
            L+HV++N +R +YN A  + +RR MMQW AD I +L+
Sbjct  354  LAHVDKNSIRDTYNHALYLDGRREMMQWYADYIDSLS  390

373) A11S_1005 in NC_020812


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  282 bits (1057),  Expect = 2e-77, Method: Compositional matrix adjust.
 Identities = 176/399 (45%), Positives = 273/399 (69%), Gaps = 6/399 (1%)

Query  1    MPLSDVACRQAKPREKSYKMGDSGGLYLEITPKGSKLWRMKYRYGGKEKRLALGQYPEVS  60
            M+L+D+  + AKP++K+YK++D+GG+YL I  +GSK WRMKYR++GKEK L++G YP+V+
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   LADARDGRDKARKLLAEHNDPSLAKQEKKRLAQASAANTFEALALEWHEKNKGNWSPNHA  120
            LADAR+ R  ARKLLA   DP+ AK+E K   Q S  NTFEA+A EWH+ + + WS    
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  121  STVLRRLEQDLFPAIGNLPIKEITTPRLAIVIENIEKRGAYDIARRALQYSRAIFAYAQL  180
              ++  +E+D+FP IG+ PI EI   +L   + ++EKRGA +  R+  Q    +F YA +
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  181  RGKIDTNPADIKAKDFLAPIKQGHYAAMEAKDLPEFLSKLYSNEARLFISTQLALEMMLL  240
             G+ D NPA   A  + +P K+ H++ + A++LP+FL+ L +  + ++  T  A ++++L
Sbjct  181  TGRADYNPAPDLASALATP-KKVHFPFLTANELPHFLNDLAGYTGSIITKT--ATQIIML  237

Query  241  TFVRTSELIKARWDEFDFEKRQWIIPAERMKMNRDHIVPLSKQVLRILEQLKPISEHREF  300
            T VRT EL  ARW+++DFE + W IPAE MKM+R HIVPLS QV+ ++ QL PIS H+ +
Sbjct  238  TGVRTQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHPL  297

Query  301  LFPGQRNPKTHMSNGAILMALKRMGYHGIHTGHGFRALAMTTIMEELGYPHEVPDTQLAH  360
            +F G+ +P+  +S+ +I  A+  +GY G  TGHGFR  +M+TI++E G+     + QLAH
Sbjct  298  VFIGRNDPRKPISKESINQAIELLGYKGRLTGHGFRH-TMSTILHEQGFNSAWIEMQLAH  356

Query  361  AKGDSVRRAYDRTKFLAQRKKMMQEW-ADYIENISHKNG  398
               +S+R +Y+++ +L  R+ MMQ W ADYI+++S +++
Sbjct  357  VDKNSIRDTYNHALYLDGRREMMQ-WYADYIDSLSSRES  394

374) PputW619_4347 in NC_010501


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  282 bits (1055),  Expect = 2e-77, Method: Compositional matrix adjust.
 Identities = 177/395 (45%), Positives = 269/395 (69%), Gaps = 2/395 (0%)

Query  1    MALTDTAIRTARPRDKLYRIADAQGLCLEVTTAGGKLWRLRYRFEGKAKMLGLGTYPSVT  60
            MALTD  ++TA+P+DK Y++AD+ G+ L + T G+K WR++YRF GK KML++G YP VT
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   LAHARERRDAARKLLSQGIDPSAYkqqekaaaeaqaltl-etlaREWYDYNQPRWAPATA  119
            LA+ARE+R  ARKLL+ G DP+  K++EK A +       E++AREW + +  RW+    
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  120  SKALQYLESDIFPLIGKRPAAEVQRPELVDLVRKIEQREAFNVARKVRQWLSQIFRFGLA  179
               ++ +E DIFP IGKRP AE++   L++ +RK+E+R A++  RKVRQ+ +++FR+++ 
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  180  KGVVAGNPATDLDvvaahaprtrhhphvSeaelpellekleaaQCDFTSKIAIRLLLLTA  239
             G    NPA DL    A + + +     ++     L +    +   + +K A ++++LT+
Sbjct  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGS-IITKTATQIIMLTG  239

Query  240  VRPGELRLAPWDEFDLESATWTIPAARMKARRPHIVPLPRQAVNLLRALHELTGTYPLAF  299
            VR  ELR+A W+++D+E+  W IPA  MK +RPHIVPL+ Q + L++ L+ ++   PL F
Sbjct  240  VRTQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHPLVF  299

Query  300  PGRNDRSRPMSENTVNKALSTMGYEGRQTGHGFRHLLSTSLNTRGYNRDWIERQLAHGDQ  359
             GRND  +P+S +++N+A+  +GY GR TGHGFRH +ST L+ +G+N  WIE QLAH D+
Sbjct  300  IGRNDPRKPISKESINQAIELLGYKGRLTGHGFRHTMSTILHEQGFNSAWIEMQLAHVDK  359

Query  360  DSIRDTYNHAHYLEQRREMMQTWADHVDALAEQTS  394
            +SIRDTYNHA YL+ RREMMQ  AD +D+L+ + S
Sbjct  360  NSIRDTYNHALYLDGRREMMQWYADYIDSLSSRES  394

375) SMD_1781 in NC_017671


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  282 bits (1055),  Expect = 2e-77, Method: Compositional matrix adjust.
 Identities = 171/395 (44%), Positives = 264/395 (67%), Gaps = 7/395 (1%)

Query  7    PLTDTAIRKAKPGPKPTKLRDGGGLYVQLNPDGSRWWRWDYRRPVTGKRNTLSLGTYPEV  66
            +LTD  ++ AKP  KP KL DGGG+Y+ +N +GS+ WR  YR   +GK + LS+G YP+V
Sbjct  2    ALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYR--FAGKEKMLSIGVYPDV  59

Query  67   SLADARGRQAEARRLLASGIDPGEHRkaakvagvekaaNSFEVVTREW--LGKQKWVESY  124
            +LADAR +++EAR+LLA+G DPGE +K  K+A      N+FE ++REW  L  ++W   Y
Sbjct  60   TLADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRY  119

Query  125  RCKVVAWMDNDVFPWIGGRPVAELAAPDFLRVARRIEERGAIESAHRIMQNCGQVMRYAV  184
            R  ++   ++D+FP IG RP+AE+ +  +L   R++E RGA+E  +++ Q CG+V RYA+
Sbjct  120  RDEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAI  179

Query  185  ATGRADRNPVADLRGALAPPMERHHAAITDPRELGGLLRAIDGYAGDASTRAALRLAPLV  244
             TGRAD NP +DL +ALA P   H + +T + EL  +L  + GY+G   T++A ++  L 
Sbjct  180  VTGRADYNPAPDLASALATPKKVHFPFLT-ANELPHFLNDLAGYTGSIITKTATQIIMLT  238

Query  245  FVRPGELRHAEWSEIDFDAGEWNIPAHKMKMREPHLVPLSSQAVAILRDLQPLTGHRQYV  304
             VR  ELR A W +IDF++  W+IPA+ MKM+ PH+VPLS Q + ++++L+P++ H+  V
Sbjct  239  GVRTQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHPLV  298

Query  305  FPGGRSPKRPLSDNALTAALRRMGFDKETMTAHGFRATARTLLDEVLGWRPDLIEHQLAH  364
            F G   P++P+S +++  A+  +G+ K  +T+HGFR T  T+L+E  G  +  IE QLAH
Sbjct  299  FIGRNDPRKPISKESINQAIELLGY-KGRLTGHGFRHTMSTILHEQ-GFNSAWIEMQLAH  356

Query  365  AVRDPNGRAYNRTSHLPERRKMMQAWADYLDALRA  399
              +++   +YN++  L  RR MMQ  ADY+D+L +
Sbjct  357  VDKNSIRDTYNHALYLDGRREMMQWYADYIDSLSS  391

376) Rpic12D_3122 in NC_012856


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  281 bits (1053),  Expect = 3e-77, Method: Compositional matrix adjust.
 Identities = 170/396 (43%), Positives = 267/396 (68%), Gaps = 9/396 (2%)

Query  1    MSLTDIAIRTAKPTDKPYKLADGGGLYVEVYPTGGKLWRLKYRFGGKEKRLSFGAYPVVS  60
            M+LTDI ++TAKP DKPYKLADGGG+Y+ +   G+K WR+KYRF+GKEK LS+G YP V+
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   LKDARERRDNAKRLLAGGIDPSIERKMQKAATVERAANSFETVGREWFARYSPTWAEGHA  120
            L DARE+R +A++LLA+G DP+  +K +K A      N+FE+++REW    +  W+    
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  121  TKIIRRLEADIFPWLGGRPIAEITAPEVLTVLRRIEARGALDTAHRAHQNCGQIFRYAVA  180
              II  +E DIFP +G RPIAEI +  +L  LR++E RGAL+  ++ +Q CG++FRYA+ 
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  181  TGRAIRDPSGDLRGALPPAKHENFASITDPVKVAELLRAIDAFRGTLVVRCALLLAPMVF  240
            TGRA  +P+ DL +AL+ +K  +F+ +T    ++++L  + ++ G+++ + A  +  +  
Sbjct  181  TGRADYNPAPDLASALATPKKVHFPFLTAN-ELPHFLNDLAGYTGSIITKTATQIIMLTG  239

Query  241  VRPGELRKAEWADFDLDAGEWRYL--VTKTKTAHLVPLATQAVAILRELHALTGHGRFVF  298
            VR  ELR A W D+D+++  W     V K K +H+VPL+ Q + ++++L++++ H  +VF
Sbjct  240  VRTQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHPLVF  299

Query  299  PGR-DPKKPMSDAAVNAALRRMGYDTRTEITGHGFRAMARTILHEELNYKPEIIEHQLAH  357
             GR DP+KP+S  ++N A+  +GY  R  +TGHGFR    TILHE+  +++  IE QLAH
Sbjct  300  IGRNDPRKPISKESINQAIELLGYKGR--LTGHGFRHTMSTILHEQ-GFNSAWIEMQLAH  356

Query  358  SVPDALGTAYNRTKFVKERRVMMQAW-ADYLDRLKA  392
               +++  +YN++ ++  RR MMQ W ADY+D L +
Sbjct  357  VDKNSIRDTYNHALYLDGRREMMQ-WYADYIDSLSS  391

377) Bamb_0912 in NC_008390


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  281 bits (1052),  Expect = 4e-77, Method: Compositional matrix adjust.
 Identities = 175/401 (44%), Positives = 275/401 (69%), Gaps = 10/401 (2%)

Query  1    MPLTDTTIRNTKPVEKPIKLFDGGGLFLLVTPAGQRYWRLKYRAAGKEKLLALGVYPEVT  60
            M+LTD  ++ +KP +KP KL DGGG++LL+   G +YWR+KYR AGKEK+L++GVYP+VT
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   LATARRKRDEARERLAAGIDPGEAKKAEKRTVRLNAENSFEAVAREWHAKYAPTWSENHA  120
            LA AR KR EAR  LAAG DPGEAKK EK + +++  N+FEA+AREWH   A  WS    
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  121  GRILRRLEVDAFPWISGKPIADLAPPDVLDALRRVEKRGALETAHRLHANISQVCRYAVA  180
            + I+  +E D FP I+ +PIA++ P  +L+ALR++EKRGALE  ++++   ++V RYA+ 
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  181  TGRAQRDVTADLRGALPPVQQEHMAALTDPKQVAELLRAIDGYQGTFPVMCALRLAPLLF  240
            TGRA+ + ++DL +AL+  ++ H + LT +++++++L  + GY G++    A ++  L  
Sbjct  181  TGRADYNPAPDLASALATPKKVHFPFLT-ANELPHFLNDLAGYTGSIITKTATQIIMLTG  239

Query  241  QRPGELRAAEWAELDLDAGTWEIPSDRMKRTKQGKASGGAHIVPLSSQAVAVLGELHALT  300
             R  ELR A W ++D+++  WEIP++ MK  +       +HIVPLS Q + ++ +L++++
Sbjct  240  VRTQELRFARWEDIDFETKLWEIPAEVMKMKR-------PHIVPLSEQVIMLFKQLEPIS  292

Query  301  GNGRFLFPSVRTKDRPMSDNTINGALLRLGYNGDTMTGHGFRAMARTILDEVLGLPAAII  360
             +  ++F +     +P+S ++IN A+  LGY+G  +TGHGFR    TIL+E  G+ +A I
Sbjct  293  KHHPLVFIGRNDPRKPISKESINQAIELLGYKG-RLTGHGFRHTMSTILHEQ-GFNSAWI  350

Query  361  EAQLAHAVKDPLGRAYNRTAHLPQRREMMQRWADYLDGLKA  401
            E QLAH  K+++  +YN++  L  RREMMQ+ ADY+D+L +
Sbjct  351  EMQLAHVDKNSIRDTYNHALYLDGRREMMQWYADYIDSLSS  391

378) intB in NC_010554


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  281 bits (1051),  Expect = 5e-77, Method: Compositional matrix adjust.
 Identities = 192/407 (48%), Positives = 285/407 (71%), Gaps = 24/407 (5%)

Query  1    MALTDAKVRAAKPLDKSYKLTDGDGMHLMVHTNGSKYWRLQYRFGGKQKMLALGVYPDIS  60
            MALTD KV++AKP DK+YKL+DG+GM L+++TNGSKYWR++YRF+GK+KML++GVYPD++
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   LaearekrdaarkLIANGFDPSekrkevkeeqqkeF-NTFEKVARDWHA-TNQRWSEGHS  118
            LA+AREKR  ARKL+A G DP+E +KE K  QQ  + NTFE +AR+WH    +RWS    
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  119  HRVLKSLEDNIFVAIGKRNIAELKTRDLLEPIKAVEMSGRLEVAARLQQRVTAIMRYAVQ  178
            + ++ ++E +IF  IGKR IAE+K   LLE+++ +E  G LE   +++QR   + RYA+ 
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  179  SGLIDYNPAQDMAGAVATGKRVHRAALELKRLPEFLERIDDYKGRPltklavkltllvFI  238
            +G  DYNPA D+A+A+AT K+VH + L  + LP+FL+ + +Y G  +TK A ++ +L  +
Sbjct  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV  240

Query  239  RSSELRFARWDEIDFENAMWTIPAEREAIEGVKHSHRGSKMRTTHLVPLSRQAIEILKQI  298
            R+ ELRFARW++IDFE  +W IPAE              KM+  H+VPLS Q I ++KQ+
Sbjct  241  RTQELRFARWEDIDFETKLWEIPAE------------VMKMKRPHIVPLSEQVIMLFKQL  288

Query  299  YQFSGNHELIFIGDHNPRKPMSENTVNNALRVMGYDTKTEVCGHGFRTMACSSLIESGL-  357
              +S +H L+FIG ++PRKP+S +++N+A+ ++GY  K  + GHGFR    + L E G+ 
Sbjct  289  EPISKHHPLVFIGRNDPRKPISKESINQAIELLGY--KGRLTGHGFRHTMSTILHEQGFN  346

Query  358  --WSKDAVERQMSHQERNSVRAAYIHKAEHIEERRLMVQWWADYLDA  402
              W    +E Q++H ++NS+R +Y H A  ++ RR M+QW ADY+D+
Sbjct  347  SAW----IEMQLAHVDKNSIRDTYNH-ALYLDGRREMMQWYADYIDS  388

379) C380_06330 in NC_018708


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  281 bits (1051),  Expect = 5e-77, Method: Compositional matrix adjust.
 Identities = 180/398 (46%), Positives = 273/398 (69%), Gaps = 14/398 (3%)

Query  1    MPLTDTACKKATCPEGRPSVRLADEKALYLEVTAAGGKYWRWKYRYGGKEKRLALGVYPD  60
            M+LTD   K A  P ++P  +LAD  ++YL + + G+KYWR KYR++GKEK L++GVYPD
Sbjct  1    MALTDIKVKTAK-PKDKPY-KLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPD  58

Query  61   VTLAQAREARDQARKVLAGGDDPGQLKRDAKMTSAVHQANTFEAVARVWWEHWRDGKSER  120
            VTLA+ARE R +ARK+LA+G+DPG+ K++ K++  +   NTFEA+AR    +W++ K++R
Sbjct  59   VTLADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAR----EWHQLKADR  114

Query  121  -HAAY---AIKRLEADAFPVLGARPIANITAKDLTRMAKAVQDRGAIDLAHRVLQMAGQV  176
                Y    I  +E D FP +G RPIA+I +  L    + ++ RGA++  ++V Q  G+V
Sbjct  115  WSLRYRDEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEV  174

Query  177  MRYAVAHDLIERNPATDVKPSDTLRSRRKENYARLGEKELPELLRKIEAYQGGPYTRLAM  236
             RYA+  +  + NPA D+  + +L + +K +++ L  +ELP++L  + +Y G+  T+ A 
Sbjct  175  FRYAIVTGRADYNPAPDL--ASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTAT  232

Query  237  QLMALTFVRTTELIAARWAEFDLQAAEWRIPPERMKMKTPHIVPLSPQAVEVLKVLHTLS  296
            Q++ LT VRT EL  ARW ++D+++  W IP+E MKMK PHIVPLS Q + ++K L+ +S
Sbjct  233  QIIMLTGVRTQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPIS  292

Query  297  GGRALLFPGERDHDKPMSNNTILKALERMGYKGRMTGHGFRGMASTILHEQGYAHHAIEL  356
              ++L+F G  D  KP+S+++I +A+E +GYKGR+TGHGFR   STILHEQG+    IE+
Sbjct  293  KHHPLVFIGRNDPRKPISKESINQAIELLGYKGRLTGHGFRHTMSTILHEQGFNSAWIEM  352

Query  357  QLAHQERNEVSAAYNHALYLKERRVMMCDW-ANHLDKL  393
            QLAH ++N +  +YNHALYL  RR MM +W A+ +D L
Sbjct  353  QLAHVDKNSIRDTYNHALYLDGRREMM-QWYADYIDSL  389

380) MU9_135 in NC_020418


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  280 bits (1046),  Expect = 1e-76, Method: Compositional matrix adjust.
 Identities = 192/407 (48%), Positives = 284/407 (70%), Gaps = 24/407 (5%)

Query  1    MALTDAKVRAAKPLDKSYKLTDGDGMHLMVHTNGSKYWRLQYRFGGKQKMLALGVYPDIS  60
            MALTD KV++AKP DK+YKL+DG+GM L+++TNGSKYWR++YRF+GK+KML++GVYPD++
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   LaearekrdaarkLIANGFDPSekrkevkeeqqkeF-NTFEKVARDWHA-TNKKWSEGHS  118
            LA+AREKR  ARKL+A G DP+E +KE K  QQ  + NTFE +AR+WH     +WS    
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  119  HRVLKSLEDNIFTAIGKRNIAELKTRDLLEPIKAVEMSGRLEVAARLQQRVTAIMRYAVQ  178
            + ++ ++E +IF  IGKR IAE+K   LLE+++ +E  G LE   +++QR   + RYA+ 
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  179  SGLIDYNPAQDMAGAVATGKRVHRAALELKRLPEFLQRIDDYKGRPltklavkltllvFI  238
            +G  DYNPA D+A+A+AT K+VH + L  + LP+FL+ + +Y G  +TK A ++ +L  +
Sbjct  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV  240

Query  239  RSSELRFARWDEIDFENAMWTIPAEREAIEGVKHSHRGSKMRTTHLVPLSRQAIEILKQI  298
            R+ ELRFARW++IDFE  +W IPAE              KM+  H+VPLS Q I ++KQ+
Sbjct  241  RTQELRFARWEDIDFETKLWEIPAE------------VMKMKRPHIVPLSEQVIMLFKQL  288

Query  299  YQFSGNHELIFIGDHNPRKPMSENTVNNALRVMGYDTKTEVCGHGFRTMACSSLIESGL-  357
              +S +H L+FIG ++PRKP+S +++N+A+ ++GY  K  + GHGFR    + L E G+ 
Sbjct  289  EPISKHHPLVFIGRNDPRKPISKESINQAIELLGY--KGRLTGHGFRHTMSTILHEQGFN  346

Query  358  --WSKDAVERQMSHQERNSVRAAYIHKAEHIDERRLMVQWWADYLDA  402
              W    +E Q++H ++NS+R +Y H A  +D RR M+QW ADY+D+
Sbjct  347  SAW----IEMQLAHVDKNSIRDTYNH-ALYLDGRREMMQWYADYIDS  388

381) intB in NC_017390


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  280 bits (1049),  Expect = 6e-77, Method: Compositional matrix adjust.
 Identities = 173/407 (43%), Positives = 274/407 (68%), Gaps = 25/407 (6%)

Query  1    MALTDIKIRNTKPSGKAVKLTDGFGMYLLIHPNGSKYWRMQYRFGGKQKTLALGVYPAVS  60
            MALTDIK++ +KP +K+ KL+DG GMYLLI+ NGSKYWRM+YRF+GK+K L++GVYP V+
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   LSDARQRRDEAKKLLAKGTDPVVKKQDDKRENSGTF--SFESVARQWHA-GNKKWSEEYK  117
            L+DAR++R EA+KLLA G DP   K+++K  +  ++  +FE++AR+WH     +WS  Y+
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  118  GKILRTLETYLFPVIGNRHIAELKTRDLLVPIKAVEDKGFNEVAMRLQQRTTAIMRYAVL  177
            + I+ T+E  +FP IG+R IAE+K   LL +++ +E +G  E   +++QR   + RYA++
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  178  QGILDYNPAQEMSGAITTGKRAHRPALPFERYHEFLERIDSYrkrlltrlavkltlltFI  237
             G  DYNPA ++++A++T K+ H P L  +   +FL+ + +Y   ++T+ A ++ +LT +
Sbjct  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV  240

Query  238  RSSELRFARWSEIDFKKSLWTIPGEREALPGIKNAHRGAKMKTPHLVPLSRQAIAILREI  297
            R+ ELRFARW +IDF   LW IP+E              KMK PH+VPLS Q I +++++
Sbjct  241  RTQELRFARWEDIDFETKLWEIPAE------------VMKMKRPHIVPLSEQVIMLFKQL  288

Query  298  QEISGDHNFIFIGDHYADKPMSENTVNKALRTMGYDTQKDVCGHGFRTMACSSLIESG--  355
            + IS +H ++FIG + + KP+S +++N+A+  +GY  +  + GHGFR    + L E G  
Sbjct  289  EPISKHHPLVFIGRNDPRKPISKESINQAIELLGYKGR--LTGHGFRHTMSTILHEQGFN  346

Query  356  -KWSKDAVERQMSHQELNNVRAAYTHQAEHLDERRLMLQWWADFLDA  401
              W    +E Q++H + N++R +Y H A  LD RR M+QW AD++D+
Sbjct  347  SAW----IEMQLAHVDKNSIRDTYNH-ALYLDGRREMMQWYADYIDS  388

382) EpC_14570 in NC_012214


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  280 bits (1049),  Expect = 6e-77, Method: Compositional matrix adjust.
 Identities = 173/407 (43%), Positives = 274/407 (68%), Gaps = 25/407 (6%)

Query  1    MALTDIKIRNTKPSGKAVKLTDGFGMYLLIHPNGSKYWRMQYRFGGKQKTLALGVYPAVS  60
            MALTDIK++ +KP +K+ KL+DG GMYLLI+ NGSKYWRM+YRF+GK+K L++GVYP V+
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   LSDARQRRDEAKKLLAKGTDPVVKKQDDKRENSGTF--SFESVARQWHA-GNKKWSEEYK  117
            L+DAR++R EA+KLLA G DP   K+++K  +  ++  +FE++AR+WH     +WS  Y+
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  118  GKILRTLETYLFPVIGNRHIAELKTRDLLVPIKAVEDKGFNEVAMRLQQRTTAIMRYAVL  177
            + I+ T+E  +FP IG+R IAE+K   LL +++ +E +G  E   +++QR   + RYA++
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  178  QGILDYNPAQEMSGAITTGKRAHRPALPFERYHEFLERIDSYrkrlltrlavkltlltFI  237
             G  DYNPA ++++A++T K+ H P L  +   +FL+ + +Y   ++T+ A ++ +LT +
Sbjct  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV  240

Query  238  RSSELRFARWSEIDFKKSLWTIPGEREALPGIKNAHRGAKMKTPHLVPLSRQAIAILREI  297
            R+ ELRFARW +IDF   LW IP+E              KMK PH+VPLS Q I +++++
Sbjct  241  RTQELRFARWEDIDFETKLWEIPAE------------VMKMKRPHIVPLSEQVIMLFKQL  288

Query  298  QEISGDHNFIFIGDHYADKPMSENTVNKALRTMGYDTQKDVCGHGFRTMACSSLIESG--  355
            + IS +H ++FIG + + KP+S +++N+A+  +GY  +  + GHGFR    + L E G  
Sbjct  289  EPISKHHPLVFIGRNDPRKPISKESINQAIELLGYKGR--LTGHGFRHTMSTILHEQGFN  346

Query  356  -KWSKDAVERQMSHQELNNVRAAYTHQAEHLDERRLMLQWWADFLDA  401
              W    +E Q++H + N++R +Y H A  LD RR M+QW AD++D+
Sbjct  347  SAW----IEMQLAHVDKNSIRDTYNH-ALYLDGRREMMQWYADYIDS  388

383) intB in NC_009348


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  280 bits (1048),  Expect = 7e-77, Method: Compositional matrix adjust.
 Identities = 178/390 (46%), Positives = 269/390 (69%), Gaps = 3/390 (0%)

Query  1    MPLTDITARQAKWSGKPNGDKLADEKGLFLLVNKSG-KYWKLKYRHGGKEKKLALGVYPE  59
            M+LTDI  + AK  +KP   KLAD  G++LL+N +G KYW++KYR +GKEK L++GVYP+
Sbjct  1    MALTDIKVKTAKPKDKPY--KLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPD  58

Query  60   VSLrearakrdearrVIAEGIDPGLVRKQSKVASRLVSENSLEVLAREWHQSQFALWSPG  119
            V+L +AR KR EAR+++A G DPG  +K+ K+A ++   N++E +AREWHQ +   WS  
Sbjct  59   VTLADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLR  118

Query  120  HATRVIESLEVDVFPDLGLVPITELTAPMILEALRKVEKRGATETAGRILQRVSAIMRYA  179
                +I+++E D+FP +G  PI+E+ +  +LEALRK+EKRGA E   ++ QR + + RYA
Sbjct  119  YRDEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYA  178

Query  180  IQTGRASYNPAQDLRGALKATKQEHRPALPRSELPEFFRRLEAEPLNPATRLALHLLMLT  239
            I TGRA YNPA DL +AL + K+ H P L  +ELP+F+  L +   +  T+ A +++MLT
Sbjct  179  IVTGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLT  238

Query  240  MTRPGEVRFARWDEFDMERAEWRIPAARMKMRTEHLVPLSRQALAVLDELHQLTGHCELL  299
              R  E+RFARW+++D E   W IPA  MKM+  H+VPLS Q + ++ +L+ ++ H  L+
Sbjct  239  GVRTQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHPLV  298

Query  300  FPSERKLTNPMSENTLSYAMGRMGYKGIATPHGFRALASTTLNEEGFDPDVIERQLAHAE  359
            F +     +P+S ++++ A+  +GYKG  T HGFR   ST L+E+GF++  IE QLAH +
Sbjct  299  FIGRNDPRKPISKESINQAIELLGYKGRLTGHGFRHTMSTILHEQGFNSAWIEMQLAHVD  358

Query  360  RNKVRAAYHRAEYLDDRRKLLQWLADFYDS  389
            +N +R +Y++A YLD+RR ++QW AD+ DS
Sbjct  359  KNSIRDTYNHALYLDGRREMMQWYADYIDS  388

384) Dda3937_03406 in NC_014500


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  280 bits (1048),  Expect = 8e-77, Method: Compositional matrix adjust.
 Identities = 175/406 (44%), Positives = 270/406 (67%), Gaps = 25/406 (6%)

Query  1    MPLTDTAIRNAKPLDKPYKLSDAQGLYLLIKPNGSKLWHLKYRFGGKEKKLAFGAYPTVS  60
            M+LTD  ++ AKP DKPYKL+D+ G+YLLI+ NGSK W++KYRF+GKEK L++G YP V+
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   LANARKLREEARTILSAGDDPGVKKQHDKQAKKNG--NTFEAIARQWVAANI-RWSEAHA  117
            LA+AR  R EAR +L+AG+DPG  K+++K A++ +  NTFEAIAR+W   +  RWS    
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  118  AKVLRSLELHVFPLIGNVLVTDLKTANLLIPLRVAEKKGCLETAARIQQRTTVIMRYAVQ  177
              ++ ++E ++FP IG+  ++++K  +LL +LR  EK+G LE   +++QR   + RYA+ 
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  178  EGLIASNPANDLCGAITPPPKNHYPAlplerlpellerIEGYSGRLLTRLAVQLNLLIFI  237
             G    NPA DL +A++ P K H+P L  + LP++L+ + GY+G ++T+ A Q+ +L  +
Sbjct  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV  240

Query  238  RSSELRFARWTEIDLDNAMWTLPAQREPITGVRHSERGAKMKTPHLVPLSKQAVTVLKQL  297
            R+ ELRFARW +ID++  +W +PA+              KMK PH+VPLS Q + ++KQL
Sbjct  241  RTQELRFARWEDIDFETKLWEIPAE------------VMKMKRPHIVPLSEQVIMLFKQL  288

Query  298  KLLSGNGDLLFPGDHDARKPMSENTINKALRTMGYDTQADICGHGFRTIACSALIESG--  355
              +S +  L+F G +D+RKP+S ++IN+A+  +GY  +  + GHGFR    + L E G  
Sbjct  289  EPISKHHPLVFIGRNDPRKPISKESINQAIELLGYKGR--LTGHGFRHTMSTILHEQGFN  346

Query  356  -RWSKDAVERQMSHQERNHVRAAYIHKAEHLDERTQMMQWWSDYLD  400
              W    +E Q++H ++N +R +Y H A  LD R +MMQW +DY+D
Sbjct  347  SAW----IEMQLAHVDKNSIRDTYNH-ALYLDGRREMMQWYADYID  387

385) SEEB0189_19950 in NC_021844


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  279 bits (1044),  Expect = 2e-76, Method: Compositional matrix adjust.
 Identities = 180/409 (45%), Positives = 262/409 (65%), Gaps = 27/409 (6%)

Query  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60
            M L   +V TAKPKDK YK+ADGGG+YL ++++GSKYWRMKYR ++  KE  L++GV P 
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAG--KEKMLSIGVYPD  58

Query  61   VTLAQARAKRDEAKKLLVQGIDPKAEQKEAQAENSGAY--TFETIAREWHE-SNKRWSED  117
            VTLA+AR KR EA+KLL  G DP   +KE +  +  +   TFE+IAREWH+    RWS  
Sbjct  59   VTLADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLR  118

Query  118  HRSRVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDTSGKHDVAQRLQQRVTAIMRYA  177
             R  ++  +E  IFP IG   I ++K   LL +++K++  G  +  ++++QR   + RYA
Sbjct  119  YRDEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYA  178

Query  178  VQNDYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLT  237
            +  +  D NPA+D+A+AL+T K  H+P L ++ +P+FL  LA+Y G ++T+ A ++ +LT
Sbjct  179  IVTGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLT  238

Query  238  FVRSSELRFARWDEFDFDKSLWRIPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMILLE  297
             VR+ ELRFARW+++DF+  LW IPA              MKMK  HIVPLS Q ++L+ 
Sbjct  239  GVRTQELRFARWEDIDFETKLWEIPAE------------VMKMKRPHIVPLSEQVIMLFK  286

Query  298  QLKQISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESG  357
            QL  IS +  L+F G +D+ K +S +++N A+  +GY  K  + GHGFR      L E G
Sbjct  287  QLEPISKHHPLVFIGRNDPRKPISKESINQAIELLGY--KGRLTGHGFRHTMSTILHEQG  344

Query  358  L---WSEDAIERQLSHSERNSVRAAYIHTSEHLDERRLMVQWWADYLDA  403
            +   W    IE QL+H ++NS+R +Y H+   LD RR M+QW ADY+D+
Sbjct  345  FNSAW----IEMQLAHVDKNSIRDTYNHAL-YLDGRREMMQWYADYIDS  388

386) Ent638_2887 in NC_009436


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  278 bits (1042),  Expect = 2e-76, Method: Compositional matrix adjust.
 Identities = 179/407 (44%), Positives = 276/407 (68%), Gaps = 25/407 (6%)

Query  1    MALTDVKVRNAKPADKPVKLTDGNGMHLLVQPSGSKYWRLQYRFSGKQKMLALGVYPEVS  60
            MALTD+KV+ AKP DKP KL+DG GM LL++ +GSKYWR++YRF+GK+KML++GVYP+V+
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   LSearrrreearQLIANNVDPGEKRKTKKIEEKGLL--IFETVARDWHS-SNRTWSDSHR  117
            L++AR +R EAR+L+A   DPGE +K  KI ++  L   FE++AR+WH      WS   R
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  118  KTVLSSLITHVFPVIGKRNITELKTRDLLVPLKKAEATGHLELAARLQQRITAIMRYAVH  177
              ++ ++  ++FP IGKR I+E+K   LL +L+K E  G LE   +++QR   + RYA+ 
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  178  NALVDQNPAYDLTGAVTTAKSNHRPAlpleqlpellKRIGTYKGKGITQIAVQLTLLTFI  237
             +  D NPA DL++A++T+K  H P L  ++LP++L+ ++ Y G  IT+ A Q+ +LT +
Sbjct  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV  240

Query  238  RSSELRFARWSEVNFKNSLWTIPAERQVLDGVKYSGRGSKMKTPHLVPLSKQAVVLLKKL  297
            R+ ELRFARW +++F   LW IPAE  V+          KMK PH+VPLS Q ++L+K+L
Sbjct  241  RTQELRFARWEDIDFETKLWEIPAE--VM----------KMKRPHIVPLSEQVIMLFKQL  288

Query  298  HAISGENELMFVGFSRDDKPISENTVNKALRTMGYDTKKDVCGHGFRTMACSALIESGL-  356
            ++IS ++ L+F+G +   KPIS +++N+A+  +GY  +  + GHGFR    + L E G+ 
Sbjct  289  EPISKHHPLVFIGRNDPRKPISKESINQAIELLGYKGR--LTGHGFRHTMSTILHEQGFN  346

Query  357  --WSRDAVEKQMSHQERNSVRAAYIHKAEHLEERKLMLQWWANYLDT  401
              W    +E Q++H ++NS+R +Y H A  L+ R+ M+QW A+Y+D+
Sbjct  347  SAW----IEMQLAHVDKNSIRDTYNH-ALYLDGRREMMQWYADYIDS  388

387) ECOK1_4788 in NC_017628


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  278 bits (1039),  Expect = 4e-76, Method: Compositional matrix adjust.
 Identities = 181/408 (45%), Positives = 261/408 (64%), Gaps = 27/408 (6%)

Query  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60
            M L   +V TAKPKDK YK+ADGGG+YL ++++GSKYWRMKYR ++  KE  L++GV P 
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAG--KEKMLSIGVYPD  58

Query  61   VTLAQARAKRDEAKKLLVQGIDPKVVQKEARAENSGAY--TFEAIAREWHA-SNKRWSED  117
            VTLA+AR KR EA+KLL  G DP   +KE +  +  +   TFEAIAREWH     RWS  
Sbjct  59   VTLADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLR  118

Query  118  HRSRVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYA  177
             R  ++  +E  IFP IG   I ++K   LL +++K++  G  +  ++++QR   + RYA
Sbjct  119  YRDEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYA  178

Query  178  VQNDYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLT  237
            +  +  D NPA+D+A+AL+T K  H+P L ++ +P+FL  LA+Y G ++T+ A ++ +LT
Sbjct  179  IVTGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLT  238

Query  238  FVRSSELRFARWDEFDFDKSLWRIPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMILLN  297
             VR+ ELRFARW+++DF+  LW IPA              MKMK  HIVPLS Q ++L++
Sbjct  239  GVRTQELRFARWEDIDFETKLWEIPAE------------VMKMKRPHIVPLSEQVIMLFK  286

Query  298  QLKQISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESG  357
            QL  IS +  L+F G +D+ K +S +++N A+  +GY  K  + GHGFR      L E G
Sbjct  287  QLEPISKHHPLVFIGRNDPRKPISKESINQAIELLGY--KGRLTGHGFRHTMSTILHEQG  344

Query  358  L---WSDDAIERQLSHSERNNVRAAYIHTSEHLDERRLMMQWWADYLD  402
            +   W    IE QL+H ++N++R +Y H+   LD RR MMQW ADY+D
Sbjct  345  FNSAW----IEMQLAHVDKNSIRDTYNHAL-YLDGRREMMQWYADYID  387

388) LHK_01737 in NC_012559


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  278 bits (1041),  Expect = 4e-76, Method: Compositional matrix adjust.
 Identities = 176/419 (43%), Positives = 268/419 (64%), Gaps = 32/419 (7%)

Query  6    PLTQLAIKNLKPQDKPYKKSDGGGLYLLINPNGSKYWRMNYRINGKQKTLAIGVYCQFAL  65
            +LT++ +K  KP+DKPYK +DGGG+YLLIN NGSKYWRM+YR+ GK+K L+IGVY + +L
Sbjct  2    ALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVTL  61

Query  66   VDDKGKARAEQVIMSLADARLHCDAARAMLAKGIDPFETKQEAKKAANGLSPGSFAYVAR  125
             D + K R+E               AR +LA G DP E+K+E K A +     +F  +AR
Sbjct  62   ADAREK-RSE---------------ARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAR  105

Query  126  EWHAKMANKWVPSHAANVLGRLERYIFPDIGHMPFAEIRTKHMLMALRKVEAKNILDVTS  185
            EWH   A++W      ++++ +E+ IFP IG  P+AEI+   +L ALRK+E +  L+   
Sbjct  106  EWHQLKADRWSLRYRDEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMR  165

Query  186  RLRQYLKQIGRYAVQTGRIDFNPGNDLDGALQTRRTVHRPALSLNRLPELLERIDAAKLR  245
            ++RQ   ++ RYA+ TGR D+NP+ DL +AL T + VH P L+ N LP++L+ + +    
Sbjct  166  KVRQRCGEVFRYAIVTGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGS  225

Query  246  PLTRAAISLTLLTFVRSSELRFARWEEIDFDRAVWLIPGEREALPGVKFSSRGAKMRTPH  305
             +T++A  + +LT VR+ ELRFARWE+IDF+  +W IP+E              KM+ PH
Sbjct  226  IITKTATQIIMLTGVRTQELRFARWEDIDFETKLWEIPAE------------VMKMKRPH  273

Query  306  LVPLCQQALALFREVHAITGRFELVFAGDHDPYKPMSESTVNIALKRMGYDTKTEVCGHG  365
            +VPL +Q + LF+++++I+ +  LVF G +DP KP+S  ++N A+  +GY  K  + GHG
Sbjct  274  IVPLSEQVIMLFKQLEPISKHHPLVFIGRNDPRKPISKESINQAIELLGY--KGRLTGHG  331

Query  366  FRAMACSALSESGQFSIEAIERQMSHQERDSVRAAYTHKAEFLTERRDMMGWWADFLDA  424
            FR    + L E G F+   IE Q++H +++S+R +Y H A +L  RR+MM W AD++D+
Sbjct  332  FRHTMSTILHEQG-FNSAWIEMQLAHVDKNSIRDTYNH-ALYLDGRREMMQWYADYIDS  388

389) intB in NC_011748


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  278 bits (1039),  Expect = 4e-76, Method: Compositional matrix adjust.
 Identities = 157/382 (42%), Positives = 254/382 (67%), Gaps = 25/382 (6%)

Query  1    MHLLVHPNGSKYWRLQYRYEGKQKMLALGVYPEITLADARVRRDEARKLLANGVDPGDKK  60
            M LL++ NGSKYWR++YR+ GK+KML++GVYP++TLADAR +R EARKLLA G DPG+ K
Sbjct  26   MYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVTLADAREKRSEARKLLAAGGDPGEAK  85

Query  61   KNDKVEQSKA--RTFKEVAIEWHG-TNKKWSEDHAHRVLKSLEDNLFAALGERNIAELKT  117
            K++K+ Q  +   TF  +A EWH     +WS    + ++ ++E ++F+ +G R IAE+K 
Sbjct  86   KEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYRDEIIDTFEKDIFPYIGKRPIAEIKP  145

Query  118  RDLLAPIKAVEMSGRLEVAARLQQRTTAIMRYAVQSGLIDYNPAQEMAGAVASCNRQHRP  177
              LL +++ +E  G LE   +++QR   + RYA+ +G  DYNPA ++A+A+A+ ++ H P
Sbjct  146  MKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIVTGRADYNPAPDLASALATPKKVHFP  205

Query  178  ALELKRIPELLTKIDSYTGRPLTRWATELSLLIFIRSSELRFARWSEIDFEASIWTIPPE  237
             L  + +P++L  + +YTG  +T+ AT++ +L  +R+ ELRFARW +IDFE+ +W IP+E
Sbjct  206  FLTANELPHFLNDLAGYTGSIITKTATQIIMLTGVRTQELRFARWEDIDFETKLWEIPAE  265

Query  238  REPIPGVKHSHRGSKMRTTHLVPLSTQALAILKQIKQFCGAHDLIFIGDHDSHKPMSENT  297
                          KM+  H+VPLS Q + ++KQ+  +   H L+FIG +D++KP+S ++
Sbjct  266  ------------VMKMKRPHIVPLSEQVIMLFKQLEPISKHHPLVFIGRNDPRKPISKES  313

Query  298  VNSALRVMGYDTKVEVCGHGFRTMACSSLVESGL---WSRDAVERQMSHMERNSVRAAYI  354
            +N A+ ++GY  +  + GHGFR    + L E G+   W    +E Q++H+++NS+R +Y 
Sbjct  314  INQAIELLGYKGR--LTGHGFRHTMSTILHEQGFNSAW----IEMQLAHVDKNSIRDTYN  367

Query  355  HKAEHLEERRLMLQWWADFLDA  376
            H A  L+ RR M+QW AD++D+
Sbjct  368  H-ALYLDGRREMMQWYADYIDS  388

390) SSPA3984 in NC_011147


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  277 bits (1037),  Expect = 6e-76, Method: Compositional matrix adjust.
 Identities = 179/409 (44%), Positives = 261/409 (64%), Gaps = 27/409 (6%)

Query  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60
            M L   +V TAKPKDK YK+ADGGG+YL ++++GSKYWRMKYR ++  KE  L++GV P 
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAG--KEKMLSIGVYPD  58

Query  61   VTLAQARAKRDEAKKLLVQGIDPKAEQKEAQAENSGAY--TFETIAREWHE-SNKRWSED  117
            VTLA+AR KR EA+KLL  G DP   +KE +  +  +   TFE+IAREWH+    RWS  
Sbjct  59   VTLADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLR  118

Query  118  HRSRVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKEVDTSGKHDVAQRLQQRVTAIMRYA  177
             R  ++  +E  IFP IG   I ++K   LL +++ ++  G  +  ++++QR   + RYA
Sbjct  119  YRDEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYA  178

Query  178  VQNDYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLT  237
            +  +  D NPA+D+A+AL+T K  H+P L ++ +P+FL  LA+Y G ++T+ A ++ +LT
Sbjct  179  IVTGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLT  238

Query  238  FVRSSELRFARWDEFDFDKSLWRIPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMILLE  297
             VR+ ELRFARW+++DF+  LW IPA              MKMK  HIVPLS Q ++L+ 
Sbjct  239  GVRTQELRFARWEDIDFETKLWEIPAE------------VMKMKRPHIVPLSEQVIMLFK  286

Query  298  QLKQISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESG  357
            QL  IS +  L+F G +D+ K +S +++N A+  +GY  K  + GHGFR      L E G
Sbjct  287  QLEPISKHHPLVFIGRNDPRKPISKESINQAIELLGY--KGRLTGHGFRHTMSTILHEQG  344

Query  358  L---WSEDAIERQLSHSERNSVRAAYIHTSEHLDERRLMVQWWADYLDA  403
            +   W    IE QL+H ++NS+R +Y H+   LD RR M+QW ADY+D+
Sbjct  345  FNSAW----IEMQLAHVDKNSIRDTYNHAL-YLDGRREMMQWYADYIDS  388

391) int in NC_006511


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  277 bits (1037),  Expect = 6e-76, Method: Compositional matrix adjust.
 Identities = 179/409 (44%), Positives = 261/409 (64%), Gaps = 27/409 (6%)

Query  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60
            M L   +V TAKPKDK YK+ADGGG+YL ++++GSKYWRMKYR ++  KE  L++GV P 
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAG--KEKMLSIGVYPD  58

Query  61   VTLAQARAKRDEAKKLLVQGIDPKAEQKEAQAENSGAY--TFETIAREWHE-SNKRWSED  117
            VTLA+AR KR EA+KLL  G DP   +KE +  +  +   TFE+IAREWH+    RWS  
Sbjct  59   VTLADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLR  118

Query  118  HRSRVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKEVDTSGKHDVAQRLQQRVTAIMRYA  177
             R  ++  +E  IFP IG   I ++K   LL +++ ++  G  +  ++++QR   + RYA
Sbjct  119  YRDEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYA  178

Query  178  VQNDYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLT  237
            +  +  D NPA+D+A+AL+T K  H+P L ++ +P+FL  LA+Y G ++T+ A ++ +LT
Sbjct  179  IVTGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLT  238

Query  238  FVRSSELRFARWDEFDFDKSLWRIPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMILLE  297
             VR+ ELRFARW+++DF+  LW IPA              MKMK  HIVPLS Q ++L+ 
Sbjct  239  GVRTQELRFARWEDIDFETKLWEIPAE------------VMKMKRPHIVPLSEQVIMLFK  286

Query  298  QLKQISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESG  357
            QL  IS +  L+F G +D+ K +S +++N A+  +GY  K  + GHGFR      L E G
Sbjct  287  QLEPISKHHPLVFIGRNDPRKPISKESINQAIELLGY--KGRLTGHGFRHTMSTILHEQG  344

Query  358  L---WSEDAIERQLSHSERNSVRAAYIHTSEHLDERRLMVQWWADYLDA  403
            +   W    IE QL+H ++NS+R +Y H+   LD RR M+QW ADY+D+
Sbjct  345  FNSAW----IEMQLAHVDKNSIRDTYNHAL-YLDGRREMMQWYADYIDS  388

392) NCGM2_0360 in NC_017549


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  277 bits (1036),  Expect = 7e-76, Method: Compositional matrix adjust.
 Identities = 191/395 (49%), Positives = 280/395 (71%), Gaps = 8/395 (2%)

Query  1    MPLTDSAIKTAKPKEKPYKLSDAQGLYLLVNPNGSKLWRLKYRVGGKEKGLAFGAYPTVT  60
            M+LTD  +KTAKPK+KPYKL+D+ G+YLL+N NGSK WR+KYR +GKEK L++G YP VT
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   LqqarqrrdearqqlaqGEDPGeqkkaskqakkvs-eLTFETLAREWYAYNAPRWAESTA  119
            L +AR++R EAR+ LA G DPGE KK  K A+++S   TFE++AREW   +A RW  S  
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRW--SLR  118

Query  120  YKAKLY--LENDLIPGIGSRPIAAITRPDLVDLVRKVEARGTLNAAGKIRQWLHQIYRYA  177
            Y+  +   +E+D++P IG RPIA I    L++ +RK+E RG+L+   K+RQ+  +++RYA
Sbjct  119  YRDEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYA  178

Query  178  LAKGVVESNPATDLDVVaapakaarhhphlpFAELPELLEKLATAKLHTLTRSAIRLLML  237
            +  G  + NPA DL    A +K  +     +  ELP++L+ LA      +T++A +++ML
Sbjct  179  IVTGRADYNPAPDLASALATPKKVHFPFLTA-NELPHFLNDLAGYTGSIITKTATQIIML  237

Query  238  TAVRPGELRAAPWCEFDLDTATWTIPAARMKARRSHVVPLPRQAVTILRQLHELTGSYSL  297
            T+VR  ELR A W ++D++T  W IPA  MK +R+H+VPL+ Q + +++QL+ ++   +L
Sbjct  238  TGVRTQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHPL  297

Query  298  LFPGQQNAERPMSENTINKALRLVGYGGRQTGHGFRHLLSTELNSRGYNRDWIERQLAHG  357
            +F G++++ +P+S ++IN+A+ L+GY GR TGHGFRH +ST L+ +G+N  WIE QLAH 
Sbjct  298  VFIGRNDPRKPISKESINQAIELLGYKGRLTGHGFRHTMSTILHEQGFNSAWIEMQLAHV  357

Query  358  DKDEIRGTYNHATYLEQRRGMMQAW-ADSIDALCS  391
            DK+ IR+TYNHA YL+ RR MMQ W AD ID+L S
Sbjct  358  DKNSIRDTYNHALYLDGRREMMQ-WYADYIDSLSS  391

393) PC1_0871 in NC_012917


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  277 bits (1035),  Expect = 9e-76, Method: Compositional matrix adjust.
 Identities = 174/407 (43%), Positives = 269/407 (67%), Gaps = 25/407 (6%)

Query  1    MPLTDTAIRNAKPLDKPYKLSDAQGLYLLIKPNGSKLWHLKYRFGGKEKKLAFGAYPTVS  60
            M+LTD  ++ AKP DKPYKL+D+ G+YLLI+ NGSK W++KYRF+GKEK L++G YP V+
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   LASARKLREEARTILSVGDDPGVKKQHDKQAKKNG--NTFEAIARQWVAANI-RWSEAHA  117
            LA AR  R EAR +L+ G+DPG  K+++K A++ +  NTFEAIAR+W   +  RWS    
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  118  AKVLRSLELHVFPLIGNVLVTDLKTANLLIPLRVAEKKGCLETATRIQQRTTVIMRYAVQ  177
              ++ ++E ++FP IG+  ++++K  +LL +LR  EK+G LE   +++QR   + RYA+ 
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  178  EGLIASNPANDLCGAITPPPKNHYpalpleklpelleRIEGYSGRLLTRLAVQLNLLIFI  237
             G    NPA DL +A++ P K H+P L  + LP++L+ + GY+G ++T+ A Q+ +L  +
Sbjct  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV  240

Query  238  RSSELRFARWTEIDLDNAMWTLPAQREPIAGVRHSERGAKMKTPHLVPLSKQAVTVLKQL  297
            R+ ELRFARW +ID++  +W +PA+              KMK PH+VPLS Q + ++KQL
Sbjct  241  RTQELRFARWEDIDFETKLWEIPAE------------VMKMKRPHIVPLSEQVIMLFKQL  288

Query  298  KLLSGNGELLFPGDHDARKPMSENTINKALRTMGYDTQVDICGHGFRTIACSALIESG--  355
              +S +  L+F G +D+RKP+S ++IN+A+  +GY  +  + GHGFR    + L E G  
Sbjct  289  EPISKHHPLVFIGRNDPRKPISKESINQAIELLGYKGR--LTGHGFRHTMSTILHEQGFN  346

Query  356  -RWSKDAVERQMSHQERNHVRAAYIHKAEHLDERTQMMQWWSDYLDA  401
              W    +E Q++H ++N +R +Y H A  LD R +MMQW +DY+D+
Sbjct  347  SAW----IEMQLAHVDKNSIRDTYNH-ALYLDGRREMMQWYADYIDS  388

394) AMBLS11_09695 in NC_018692


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  277 bits (1035),  Expect = 9e-76, Method: Compositional matrix adjust.
 Identities = 165/396 (42%), Positives = 269/396 (68%), Gaps = 11/396 (2%)

Query  1    MPLTDRAIKAIKPADKDQWVSDKDGLRLLVKSNGNKFWRLKYRFAGKQKTLALGSYPETP  60
            M+LTD  +K+ KP DK   ++D +G+ LL+++NG+K+WR+KYRFAGK+K L++G YP+  
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   LSKARELTMQARLTVKSGVDPAAEKR-EKVREEQRLNEDLFMNVAMEWWEQQSGGWTENH  119
            L+ ARE   +AR  + +G DP+  K+ EK+ ++  L++  F  +A EW + +++ W+   
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNT-FEAIAREWHQLKADRWSLRY  119

Query  120  ARRVWLRLKDNSFTALGKRPISTIRPRDVIETVREIEKRGALDVAQRVLQDIGRVCRYAV  179
               +   +  + F  +GKRPI+ I+P  ++E++R +EKRGAL+  ++V Q  G V RYA+
Sbjct  120  RDEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAI  179

Query  180  QTERINFNPASELSDVLKSRKVEHRASLPREQLPAFVKALSTYEEKGRLLTKYAIQLLVL  239
             T R ++NPA++L+  L + K  H + L  ++LP F++ L+ Y   G ++TK A Q+++L
Sbjct  180  VTGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGY--TGSIITKTATQIIML  237

Query  240  TFVRPGELRGARWEEFNFDDNIWRIPADRMKMRSEHIVPLSQQALQVIELIKPITQQYQL  299
            T VR  ELR ARWE+++F+ ++W IPA+ MKM+  HIVPLS+Q + ++  + PI+++  L
Sbjct  238  TGVRTQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHPL  297

Query  300  LFPSERDRNDPMSDNTMRRAIFKLGYDGTKPGKAKANPHGFRATASSILNEQGFNPDAIE  359
            +F +  D   P+S +++ +AI  LGY      K++   HGFR T S+IL+EQGFN+  IE
Sbjct  298  VFIGRNDPRKPISKESINQAIELLGY------KGRLTGHGFRHTMSTILHEQGFNSAWIE  351

Query  360  RQLSHMERNGVRAAYTHHARYLDERKEMMQWWADYV  395
             QL+H+++N++R +Y +HA YLD R+EMMQW ADY+
Sbjct  352  MQLAHVDKNSIRDTY-NHALYLDGRREMMQWYADYI  386

395) NAL212_2545 in NC_015222


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  276 bits (1033),  Expect = 1e-75, Method: Compositional matrix adjust.
 Identities = 194/393 (50%), Positives = 279/393 (71%), Gaps = 2/393 (0%)

Query  1    MKLTDTAIKKAKPQAKPYRIADGGGMYIEVKPNGAKYWRMAYRFADKQKTLALGVYPDVT  60
            M LTD  +K AKP+ KPY++ADGGGMY+ ++ NG+KYWRM YRFA+K+K L++GVYPDVT
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   LADARDRRNEARKLLANGADPGAVkqsqkkqakiaasnsFELIAREFHSLKTPMWSTNHA  120
            LADAR++R+EARKLLA G+DPG  K+ +K   +++  N+FE IARE H LK+  WS    
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  121  ADWIKTLEREIFPKFGNYPISEIDAPAVLDAIRAIESRDAHEvaarvlqrvravcaYAIA  180
             + I T+E++IFP +G+ PI+EI +  +L+A+R +E R+A E   +V QR   V  YAI 
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  181  TGRARHNPASEIKGALAPQPKIKHFAALTEKELPDFLRAVAAYPCYPLTKYATALLMLTF  240
            TGRA  NPA+++ +ALA   K+ HF+ LT +ELP+FL  +A+Y    +TK AT ++MLT 
Sbjct  181  TGRADYNPAPDLASALATPKKV-HFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTG  239

Query  241  VRTGEVRGAKWCEFDLDAKLWKIPAERMKSREPHIVPLAKQAIEILGELHPLTGHGEHLF  300
            VRT E+R A+W ++D+++KLW IPAE MK + PHIVPL+ Q I ++ +L+P++ H   +F
Sbjct  240  VRTQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHPLVF  299

Query  301  PNRTGNGKVISENTVLKVIERLGYKGRMTGHGFRTIASTYLNGVGMIRPDVIEAQLAHTE  360
              R +  K IS +++ + IE LGYKGR+TGHGFR   ST L+  G + +  IE QLAH +
Sbjct  300  IGRNDPRKPISKESINQAIELLGYKGRLTGHGFRHTMSTILHEQG-FNSAWIEMQLAHVD  358

Query  361  anatraaynranyMEYRAAMMQFWADTLDAMEA  393
             N+ R +YN+A Y++ R  MMQ  AD +D++ +
Sbjct  359  KNSIRDTYNHALYLDGRREMMQWYADYIDSLSS  391

396) NH8B_1979 in NC_016002


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  276 bits (1032),  Expect = 1e-75, Method: Compositional matrix adjust.
 Identities = 176/389 (46%), Positives = 261/389 (68%), Gaps = 3/389 (0%)

Query  1    MPLSDVKIRTSKPLDKPYKLQDGKGLYLEIRPTGAKFWRYRYWTSPTKDGIYTIGEYPDV  60
            M+L+D+K++T+KP DKPYKL DG G+YL I   G+K+WR +Y+ +  K+ + +IG YPDV
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFA-GKEKMLSIGVYPDV  59

Query  61   SraearaerervrllvKEGKNPTAEKKLDKLRSQKETATTLAVVAEEWKVVNWPHWSETY  120
            + A+AR  R   R L+  G +P   KK +K+  Q     T+  +A EW  ++  +WS  Y
Sbjct  60   TLADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRY  119

Query  121  RKQVEKHLQRDLLDEYGELPIREVTSAQLLAAIRKIDERGAPSIARLVRQWAGSIFRHAI  180
            R ++   +++D++   G  PI E+ + +LL A+RK++ RGA    R VRQ+ G +FR AI
Sbjct  120  RDEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAI  179

Query  181  ATLRADSDPTYPLRGALRMPPTRHNAHLSADELPGFMKALDAYKGFGLTRLAVNLQMLTL  240
             T RAD +P+  L +AL  P   H + L+A+ELP F++ L +Y G  +T+ A ++ MLT 
Sbjct  180  VTGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTG  239

Query  241  VRTQELRLAEWTEFDLDAAEWRIPAEKMKMRDPHIVPLPKQAVAIMRELEPLTGRRRWVF  300
            VRTQELR+A W ++D+++  W IPAE MKM+ PHIVPL+ Q + + ++LEP++ ++  VF
Sbjct  240  VRTQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHPLVF  299

Query  301  PNIRNHDTGMTNTTILRVIEILGYKGRATGHGFRATASTILHEQGWNSDIIERQLAHLER  360
                +    +++ +I + IE+LGYKGR TGHGFR T STILHEQG NS  IE QLAH+++
Sbjct  300  IGRNDPRKPISKESINQAIELLGYKGRLTGHGFRHTMSTILHEQGFNSAWIEMQLAHVDK  359

Query  361  NKVKAAYNHAGYLKERREMLQAW-ADYLD  388
            N ++ +YNHA YL  RREM+Q W ADY+D
Sbjct  360  NSIRDTYNHALYLDGRREMMQ-WYADYID  387

397) SNSL254_A4836 in NC_011080


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  276 bits (1032),  Expect = 1e-75, Method: Compositional matrix adjust.
 Identities = 179/410 (44%), Positives = 260/410 (64%), Gaps = 27/410 (6%)

Query  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60
            M L   +V TAKPKDK YK+ADGGG+YL ++++GSKYWRMKYR ++  KE  L++GV P 
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAG--KEKMLSIGVYPD  58

Query  61   VTLAQARAKRDEAKKLLVQGIDPKAEQKEAQAENSGAY--TFETIAREWHA-SNKRWSED  117
            VTLA+AR KR EA+KLL  G DP   +KE +  +  +   TFE+IAREWH     RWS  
Sbjct  59   VTLADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLR  118

Query  118  HRSRVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAVMRYA  177
             R  ++  +E  IFP IG   I ++K   LL +++K++  G  +  ++++QR   V RYA
Sbjct  119  YRDEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYA  178

Query  178  VQNDYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLT  237
            +  +  D NPA+D+A+AL+T K  H+P L ++ +P+FL  LA+Y G ++T+ A ++ +LT
Sbjct  179  IVTGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLT  238

Query  238  FVRSSELRFARWDEFDFDKSLWRIPAKREEIKGVRYSYRGMKMKEEHIVPLSLQAMALLE  297
             VR+ ELRFARW+++DF+  LW IPA              MKMK  HIVPLS Q + L+ 
Sbjct  239  GVRTQELRFARWEDIDFETKLWEIPAE------------VMKMKRPHIVPLSEQVIMLFK  286

Query  298  QLKQMSGDKELLFPGDHDPTKVMSENTVNSALRAMGYDTKTDVCGHGFRTMARGALGESG  357
            QL  +S +  L+F G +DP K +S +++N A+  +GY  +  + GHGFR      L E G
Sbjct  287  QLEPISKHHPLVFIGRNDPRKPISKESINQAIELLGYKGR--LTGHGFRHTMSTILHEQG  344

Query  358  L---WSDDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDEI  404
            +   W    IE QL+H ++N++R +Y H+   LD RR M+QW ADY+D +
Sbjct  345  FNSAW----IEMQLAHVDKNSIRDTYNHAL-YLDGRREMMQWYADYIDSL  389

398) plu4477 in NC_005126


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  276 bits (1034),  Expect = 1e-75, Method: Compositional matrix adjust.
 Identities = 170/408 (42%), Positives = 259/408 (64%), Gaps = 24/408 (5%)

Query  1    MALTDVVARTAKPREQAYKLADAHGLYLMISPGGSKRWYLKYRFEGKESRIAFGAYPLIS  60
            MALTD+  +TAKP++++YKLAD+ G+YL+I+  GSK W +KYRF GKE  +++G YP ++
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   LAKAREKRDEVRLLLADGINPAEKRGEGKKEAQDAL-ITFEKVARDWHRNISQNRWSETH  119
            LA AREKR E R LLA G +P+E + E K   Q +L  TFE +AR+WH ++  +RWS   
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWH-QLKADRWSLRY  119

Query  120  AGRVWRDMERNILPAIGHRHIADLKTKDLLEPLKAVEQNGHLDLASRLRQRVTDIMRYAV  179
             + +    E++I+P IG R IA++K   LLE+L+ +E+ G L+   ++RQR  ++ RYA+
Sbjct  120  RDEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAI  179

Query  180  QNDLIERNPAQDLSGAIAPPKATHRPALKLDKLPDFLARIENYKGRTLTTLALKFTLCVF  239
              +  + NPA DL++A+A PK  H P L  + LP+FL  +  Y G  +T  A ++ +   
Sbjct  180  VTGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTG  239

Query  240  IRSSELRFARWTEIDFKRAMWTIPAEREAIPGVKHSQRGAKMRTEHLVPLSRQALALLKE  299
            +R+ ELRFARW +IDF   +W IPAE              KM+  H+VPLS Q + L+K+
Sbjct  240  VRTQELRFARWEDIDFETKLWEIPAE------------VMKMKRPHIVPLSEQVIMLFKQ  287

Query  300  IQAISGGHELIFPGDRRPTKPMSENTVNNALRVMGYDTTTELCGHGFRTMACSALVESG-  358
            +++IS  H L+F G   P KP+S +++N+A+ ++GY     L GHGFR    + L E G 
Sbjct  288  LEPISKHHPLVFIGRNDPRKPISKESINQAIELLGYKGR--LTGHGFRHTMSTILHEQGF  345

Query  359  --QWSRDAVERQMSHQERDSVRAAYIHKAEHIEERRLMLQWWADYLDA  404
               W    +E Q++H +++S+R +Y H A  ++ RR M+QW ADY+D+
Sbjct  346  NSAW----IEMQLAHVDKNSIRDTYNH-ALYLDGRREMMQWYADYIDS  388

399) KPHS_05400 in NC_016845


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  276 bits (1031),  Expect = 2e-75, Method: Compositional matrix adjust.
 Identities = 180/413 (44%), Positives = 261/413 (64%), Gaps = 27/413 (6%)

Query  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60
            M L   +V TAKPKDK YK+ADGGG+YL ++++GSKYWRMKYR ++  KE  L++GV P 
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAG--KEKMLSIGVYPD  58

Query  61   VTLAQARTKRDEAKKLLVQGIDPKAEQKEAQAENSGAY--TFETIAREWHA-SNKRWSED  117
            VTLA+AR KR EA+KLL  G DP   +KE +  +  +   TFE+IAREWH     RWS  
Sbjct  59   VTLADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLR  118

Query  118  HRSRVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYA  177
             R  ++  +E  IFP IG   I ++K   LL +++K++  G  +  ++++QR   + RYA
Sbjct  119  YRDEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYA  178

Query  178  VQNDYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLT  237
            +  +  D NPA+D+A+AL+T K  H+P L ++ +P+FL  LA+Y G ++T+ A ++ +LT
Sbjct  179  IVTGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLT  238

Query  238  FVRSSELRFARWDEFDFAKSLWRIPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAIVLLE  297
             VR+ ELRFARW+++DF   LW IPA              MKMK  HIVPLS Q I+L+ 
Sbjct  239  GVRTQELRFARWEDIDFETKLWEIPAE------------VMKMKRPHIVPLSEQVIMLFK  286

Query  298  QLKQISGDKELLFPGDHDATKVMSENTVNGALRAMGYDTKTEVCGHGFRTMARGALGESG  357
            QL  IS +  L+F G +D+ K +S +++N A+  +GY  K  + GHGFR      L E G
Sbjct  287  QLEPISKHHPLVFIGRNDPRKPISKESINQAIELLGY--KGRLTGHGFRHTMSTILHEQG  344

Query  358  L---WSDDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLKSNEGK  407
            +   W    IE QL+H ++N++R +Y H+   LD RR M+QW ADY+ S  ++
Sbjct  345  FNSAW----IEMQLAHVDKNSIRDTYNHAL-YLDGRREMMQWYADYIDSLSSR  392

400) N559_4601 in NC_022082


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  276 bits (1031),  Expect = 2e-75, Method: Compositional matrix adjust.
 Identities = 180/413 (44%), Positives = 261/413 (64%), Gaps = 27/413 (6%)

Query  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60
            M L   +V TAKPKDK YK+ADGGG+YL ++++GSKYWRMKYR ++  KE  L++GV P 
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAG--KEKMLSIGVYPD  58

Query  61   VTLAQARTKRDEAKKLLVQGIDPKAEQKEAQAENSGAY--TFETIAREWHA-SNKRWSED  117
            VTLA+AR KR EA+KLL  G DP   +KE +  +  +   TFE+IAREWH     RWS  
Sbjct  59   VTLADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLR  118

Query  118  HRSRVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYA  177
             R  ++  +E  IFP IG   I ++K   LL +++K++  G  +  ++++QR   + RYA
Sbjct  119  YRDEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYA  178

Query  178  VQNDYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLT  237
            +  +  D NPA+D+A+AL+T K  H+P L ++ +P+FL  LA+Y G ++T+ A ++ +LT
Sbjct  179  IVTGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLT  238

Query  238  FVRSSELRFARWDEFDFAKSLWRIPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAIVLLE  297
             VR+ ELRFARW+++DF   LW IPA              MKMK  HIVPLS Q I+L+ 
Sbjct  239  GVRTQELRFARWEDIDFETKLWEIPAE------------VMKMKRPHIVPLSEQVIMLFK  286

Query  298  QLKQISGDKELLFPGDHDATKVMSENTVNGALRAMGYDTKTEVCGHGFRTMARGALGESG  357
            QL  IS +  L+F G +D+ K +S +++N A+  +GY  K  + GHGFR      L E G
Sbjct  287  QLEPISKHHPLVFIGRNDPRKPISKESINQAIELLGY--KGRLTGHGFRHTMSTILHEQG  344

Query  358  L---WSDDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLKSNEGK  407
            +   W    IE QL+H ++N++R +Y H+   LD RR M+QW ADY+ S  ++
Sbjct  345  FNSAW----IEMQLAHVDKNSIRDTYNHAL-YLDGRREMMQWYADYIDSLSSR  392

401) SN31241_8570 in NC_021902


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  276 bits (1032),  Expect = 2e-75, Method: Compositional matrix adjust.
 Identities = 179/410 (44%), Positives = 260/410 (64%), Gaps = 27/410 (6%)

Query  5    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  64
            M L   +V TAKPKDK YK+ADGGG+YL ++++GSKYWRMKYR ++  KE  L++GV P 
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAG--KEKMLSIGVYPD  58

Query  65   VTLAQARAKRDEAKKLLVQGIDPKAEQKEAQAENSGAY--TFETIAREWHA-SNKRWSED  121
            VTLA+AR KR EA+KLL  G DP   +KE +  +  +   TFE+IAREWH     RWS  
Sbjct  59   VTLADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLR  118

Query  122  HRSRVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAVMRYA  181
             R  ++  +E  IFP IG   I ++K   LL +++K++  G  +  ++++QR   V RYA
Sbjct  119  YRDEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYA  178

Query  182  VQNDYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLT  241
            +  +  D NPA+D+A+AL+T K  H+P L ++ +P+FL  LA+Y G ++T+ A ++ +LT
Sbjct  179  IVTGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLT  238

Query  242  FVRSSELRFARWDEFDFDKSLWRIPAKREEIKGVRYSYRGMKMKEEHIVPLSLQAMALLE  301
             VR+ ELRFARW+++DF+  LW IPA              MKMK  HIVPLS Q + L+ 
Sbjct  239  GVRTQELRFARWEDIDFETKLWEIPAE------------VMKMKRPHIVPLSEQVIMLFK  286

Query  302  QLKQMSGDKELLFPGDHDPTKVMSENTVNSALRAMGYDTKTDVCGHGFRTMARGALGESG  361
            QL  +S +  L+F G +DP K +S +++N A+  +GY  +  + GHGFR      L E G
Sbjct  287  QLEPISKHHPLVFIGRNDPRKPISKESINQAIELLGYKGR--LTGHGFRHTMSTILHEQG  344

Query  362  L---WSDDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDEI  408
            +   W    IE QL+H ++N++R +Y H+   LD RR M+QW ADY+D +
Sbjct  345  FNSAW----IEMQLAHVDKNSIRDTYNHAL-YLDGRREMMQWYADYIDSL  389

402) Dret_1610 in NC_013223


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  276 bits (1031),  Expect = 2e-75, Method: Compositional matrix adjust.
 Identities = 159/396 (41%), Positives = 266/396 (68%), Gaps = 7/396 (1%)

Query  1    MALTVKAIQAAKPREKLYRLNDERGLYLEIPPKGAYRWRFRYRFHGKPKMVSLGRYPDIS  60
            MALT   +++AKP++K Y+L D  G+YL I  +G+  WR +YRF GK KM+S+G YPD++
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   LKQAREKRDEMRALVASSIDPSNYLRQAR---HAAKDDSFEAVAREWHKKFKSRWTEGHA  117
            L +AREKR E R L+A++ DP++  ++ +   + +  ++FEA+AREWH+    RW+    
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  118  ATVLTRLEQNAFPWIGSQPIDSVTPLDILPLLRRIEDRGAIELAHRVRGIISQVFRFAVA  177
              ++  +E++ FP IG +PI  + P+ +L  LR++E RGA+E  ++VR   ++VFR+A+ 
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  178  NERASRDPASDLRDALTPRQENHFAAITNPSEIPALLGAISEYQGHFVTRCALRLASLVF  237
              RA  +PA+DL  AL+  +  HF+ +T ++E+P +L  ++ Y G ++T+ A ++  L  
Sbjct  181  TGRADYNPAPDLASALATPKKVHFPFLT-ANELPHFLNDLAGYTGSIITKTATQIIMLTG  239

Query  238  VRPGELRKAEWDEIDLAHQEWRLPPAKTKLRKTHIIPLAHQACAIFNEIHPLTGTGRYVF  297
            VR  ELR A W++ID+  + W +P+   K+++ HI+PL++Q   +F++++P++     VF
Sbjct  240  VRTQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHPLVF  299

Query  298  PSARDKNKPMSENTINAALRQLGFSKEKMTAHGFRSMASTRLNELGWHPDAIERQLGHTE  357
             +  D  KP+S ++IN A+  LG+ K ++T+HGFR   ST L+E G ++  IE QL+H +
Sbjct  300  IGRNDPRKPISKESINQAIELLGY-KGRLTGHGFRHTMSTILHEQGFNSAWIEMQLAHVD  358

Query  358  KNGVRAAYNHAEYLEERRKMMQAW-ADYLDKLTNKD  392
            KN++R +YNHA YL+ RR MMQ W ADY+D L++++
Sbjct  359  KNSIRDTYNHALYLDGRREMMQ-WYADYIDSLSSRE  393

403) ENC_43890 in NC_021046


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  275 bits (1030),  Expect = 2e-75, Method: Compositional matrix adjust.
 Identities = 177/408 (44%), Positives = 258/408 (64%), Gaps = 27/408 (6%)

Query  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60
            M L   +V TAKPKDK YK+ADGGG+YL ++++GSKYWRMKYR ++  KE  L++GV P 
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAG--KEKMLSIGVYPD  58

Query  61   VTLAQARAKRDEAKKLLVQGIDPKAEQKEAQAENSGEY--TFETIGREWHA-SNKRWSED  117
            VTLA+AR KR EA+KLL  G DP   +KE +  +      TFE+I+REWH     RWS  
Sbjct  59   VTLADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLR  118

Query  118  HRSRVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYA  177
             R  ++  +E  IFP IG   I ++K   LL +++K++  G  +  ++++QR   + RYA
Sbjct  119  YRDEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYA  178

Query  178  VQNDYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLT  237
            +  +  D NPA+D+A+AL+T K  H+P L ++ +P+FL  LA+Y G ++T+ A ++ +LT
Sbjct  179  IVTGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLT  238

Query  238  FVRSSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMILLE  297
             VR+ ELRFARW+++DF+  LW +PA              MKMK  HIVPLS Q ++L+ 
Sbjct  239  GVRTQELRFARWEDIDFETKLWEIPAE------------VMKMKRPHIVPLSEQVIMLFK  286

Query  298  QLKQISGDKKLLFPGDHDTTKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESG  357
            QL  IS +  L+F G +D  K +S +++N A+  +GY  K  + GHGFR      L E G
Sbjct  287  QLEPISKHHPLVFIGRNDPRKPISKESINQAIELLGY--KGRLTGHGFRHTMSTILHEQG  344

Query  358  L---WSDDAIERQLSHTERNNVRAAYIHTSEHLDERRLMVQWWADYLD  402
            +   W    IE QL+H ++N++R +Y H+   LD RR M+QW ADY+D
Sbjct  345  FNSAW----IEMQLAHVDKNSIRDTYNHAL-YLDGRREMMQWYADYID  387

404) LHK_01566 in NC_012559


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  275 bits (1029),  Expect = 2e-75, Method: Compositional matrix adjust.
 Identities = 169/391 (44%), Positives = 256/391 (66%), Gaps = 3/391 (0%)

Query  2    LSDTKVRQAKPQEKVYRIADARGLAIEIRPTGQKIWRYRFRLDGKANMFTIGEYPSVSLS  61
            L+D KV+ AKP++K Y++AD+ G+ + I   G K WR ++R+ GK +M++IG YP V+L+
Sbjct  3    LTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVTLA  62

Query  62   EARKKLEEARELVFKGINPNTAKKTDIASRIEENANTFRVVADDWIQTNT-HWSDTYRKQ  120
            +AR K  EAR L+  G +P  AKK +  ++     NTF  +A +W Q ++ +WS  YR +
Sbjct  63   DAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYRDE  122

Query  121  VRKTLEVDIFPCFGDLPIREISSAQVLAMLNGIIKRNAPLVARNARQWAGAVFRHGITTL  180
            +  T+E DIFP +G  PI EI + ++L  L  + KR A    R+ RQ+ G VFR +I T 
Sbjct  123  IIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIVTG  182

Query  181  RCETDPTQPLNGVIKVGKVNHHRPLKPETLPGFLKALYAYKGYGIAKPAAQLMMLTFVRT  240
            R + +P+  L + +   K  H   L ++ LP FL+ L +Y G  I+K A+Q++MLT VRT
Sbjct  183  RADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGVRT  242

Query  241  IEIRRAEWSDIDLENGVWRIPPEKMKMRTEHIVPLSRQSIAILRELQSLTGHRLYVFPNT  300
             E+R A W DID+E  +W IP+E MKM+  HIVPLS Q I ++++L++++ H+  VF   
Sbjct  243  QELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHPLVFIGR  302

Query  301  RRPHEAITATTINRVIEYMGYKGIVSGHGFRSTASTILHELGYPEKVIELQLAHMERNKV  360
              P+ +I+  +IN+ IE +GYKG ++GHGFR T STILHE G+    IE+QLAH+++N +
Sbjct  303  NDPRKPISKESINQAIELLGYKGRLTGHGFRHTMSTILHEQGFNSAWIEMQLAHVDKNSI  362

Query  361  KAAYNHAQHMEERRKMMQDW-ADYLDALRIK  390
            + +YNHA  ++ RR MMQ W ADY+D+L  +
Sbjct  363  RDTYNHALYLDGRREMMQ-WYADYIDSLSSR  392

405) STY4821 in NC_003198


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  275 bits (1030),  Expect = 2e-75, Method: Compositional matrix adjust.
 Identities = 178/410 (44%), Positives = 261/410 (64%), Gaps = 27/410 (6%)

Query  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60
            M L   +V TAKPKDK YK+ADGGG+YL ++++GSKYWRMKYR ++  KE  L++GV P 
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAG--KEKMLSIGVYPD  58

Query  61   VTLAQARAKRDEAKKLLVQGIDPKTEQKEAQAENSGAY--TFETIAREWHA-SNKRWSED  117
            VTLA+AR KR EA+KLL  G DP   +KE +  +  +   TFE+IAREWH     RWS  
Sbjct  59   VTLADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLR  118

Query  118  HRSRVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYA  177
             R  ++  +E  IFP IG   I ++K   LL +++K++  G  +  ++++QR   + RYA
Sbjct  119  YRDEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYA  178

Query  178  VQNDYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLT  237
            +  +  D NPA+D+A+AL+T K  H+P L ++ +P+FL  LA+Y G ++T+ A ++ +LT
Sbjct  179  IVTGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLT  238

Query  238  FVRSSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLE  297
             VR+ ELRFARW+++DF+  LW +PA              MKMK  HIVPLS Q ++L+ 
Sbjct  239  GVRTQELRFARWEDIDFETKLWEIPAE------------VMKMKRPHIVPLSEQVIMLFK  286

Query  298  QLKQISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESG  357
            QL  IS +  L+F G +D+ K +S +++N A+  +GY  K  + GHGFR      L E G
Sbjct  287  QLEPISKHHPLVFIGRNDPRKPISKESINQAIELLGY--KGRLTGHGFRHTMSTILHEQG  344

Query  358  L---WSDDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDII  404
            +   W    IE QL+H ++N++R +Y H+   LD RR M+QW ADY+D +
Sbjct  345  FNSAW----IEMQLAHVDKNSIRDTYNHAL-YLDGRREMMQWYADYIDSL  389

406) TY21A_22985 in NC_021176


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  275 bits (1030),  Expect = 2e-75, Method: Compositional matrix adjust.
 Identities = 178/410 (44%), Positives = 261/410 (64%), Gaps = 27/410 (6%)

Query  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60
            M L   +V TAKPKDK YK+ADGGG+YL ++++GSKYWRMKYR ++  KE  L++GV P 
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAG--KEKMLSIGVYPD  58

Query  61   VTLAQARAKRDEAKKLLVQGIDPKTEQKEAQAENSGAY--TFETIAREWHA-SNKRWSED  117
            VTLA+AR KR EA+KLL  G DP   +KE +  +  +   TFE+IAREWH     RWS  
Sbjct  59   VTLADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLR  118

Query  118  HRSRVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYA  177
             R  ++  +E  IFP IG   I ++K   LL +++K++  G  +  ++++QR   + RYA
Sbjct  119  YRDEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYA  178

Query  178  VQNDYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLT  237
            +  +  D NPA+D+A+AL+T K  H+P L ++ +P+FL  LA+Y G ++T+ A ++ +LT
Sbjct  179  IVTGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLT  238

Query  238  FVRSSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLE  297
             VR+ ELRFARW+++DF+  LW +PA              MKMK  HIVPLS Q ++L+ 
Sbjct  239  GVRTQELRFARWEDIDFETKLWEIPAE------------VMKMKRPHIVPLSEQVIMLFK  286

Query  298  QLKQISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESG  357
            QL  IS +  L+F G +D+ K +S +++N A+  +GY  K  + GHGFR      L E G
Sbjct  287  QLEPISKHHPLVFIGRNDPRKPISKESINQAIELLGY--KGRLTGHGFRHTMSTILHEQG  344

Query  358  L---WSDDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDII  404
            +   W    IE QL+H ++N++R +Y H+   LD RR M+QW ADY+D +
Sbjct  345  FNSAW----IEMQLAHVDKNSIRDTYNHAL-YLDGRREMMQWYADYIDSL  389

407) t4518 in NC_004631


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  275 bits (1030),  Expect = 2e-75, Method: Compositional matrix adjust.
 Identities = 178/410 (44%), Positives = 261/410 (64%), Gaps = 27/410 (6%)

Query  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60
            M L   +V TAKPKDK YK+ADGGG+YL ++++GSKYWRMKYR ++  KE  L++GV P 
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAG--KEKMLSIGVYPD  58

Query  61   VTLAQARAKRDEAKKLLVQGIDPKTEQKEAQAENSGAY--TFETIAREWHA-SNKRWSED  117
            VTLA+AR KR EA+KLL  G DP   +KE +  +  +   TFE+IAREWH     RWS  
Sbjct  59   VTLADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLR  118

Query  118  HRSRVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYA  177
             R  ++  +E  IFP IG   I ++K   LL +++K++  G  +  ++++QR   + RYA
Sbjct  119  YRDEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYA  178

Query  178  VQNDYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLT  237
            +  +  D NPA+D+A+AL+T K  H+P L ++ +P+FL  LA+Y G ++T+ A ++ +LT
Sbjct  179  IVTGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLT  238

Query  238  FVRSSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLE  297
             VR+ ELRFARW+++DF+  LW +PA              MKMK  HIVPLS Q ++L+ 
Sbjct  239  GVRTQELRFARWEDIDFETKLWEIPAE------------VMKMKRPHIVPLSEQVIMLFK  286

Query  298  QLKQISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESG  357
            QL  IS +  L+F G +D+ K +S +++N A+  +GY  K  + GHGFR      L E G
Sbjct  287  QLEPISKHHPLVFIGRNDPRKPISKESINQAIELLGY--KGRLTGHGFRHTMSTILHEQG  344

Query  358  L---WSDDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDII  404
            +   W    IE QL+H ++N++R +Y H+   LD RR M+QW ADY+D +
Sbjct  345  FNSAW----IEMQLAHVDKNSIRDTYNHAL-YLDGRREMMQWYADYIDSL  389

408) GBP346_A3075 in NC_012695


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  275 bits (1030),  Expect = 2e-75, Method: Compositional matrix adjust.
 Identities = 172/401 (43%), Positives = 267/401 (67%), Gaps = 10/401 (2%)

Query  1    MALTDMAIRRAKPMEKQQKLFDSGGLFLLVTPAGGKRWVLKYRFGGREKSLAFGTYPEVS  60
            MALTD+ ++ AKP +K  KL D+GG++LL+   G+K W +KYRF+G+EK L++G YP+V+
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   LVEARKKRDAAREKLAANIDPGEAKKAEKRTQRLNAENSFEAIAREWHAKYAPTWSDSHG  120
            L +AR KR  AR  LAA  DPGEAKK EK +Q+++  N+FEAIAREWH   A  WS    
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  121  NRILRRLEVDAFPWIGGKPMANLTPPDVLDILRRVEKRGALETAHRLRGNVGQVCRYAVA  180
            + I+  +E D FP IG +P+A++ P  +L+ LR++EKRGALE  +++R   G+V RYA+ 
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  181  TGRAERDVTSDLRGALPPPETEHFAAVTAPKELGELLRAIDSYRGTFPVLCALRLAPLVF  240
            TGRA+ + ++DL +AL+ P   HF+ +TA +EL ++L  + +Y G++    A ++  L  
Sbjct  181  TGRADYNPAPDLASALATPKKVHFPFLTA-NELPHFLNDLAGYTGSIITKTATQIIMLTG  239

Query  241  QRPGELRAAEWEEFDLDAATWEIPSARMKRRKKDKASGGAHIVPLASQAISVLRELHLLT  300
             R  ELR A WE++D+++  WEIP+  MK ++       +HIVPL+ Q I ++++L+ ++
Sbjct  240  VRTQELRFARWEDIDFETKLWEIPAEVMKMKR-------PHIVPLSEQVIMLFKQLEPIS  292

Query  301  GNGRYLFSGARSKTRPMSDNTVNAALRRLGYDSSTMTGHGFRATARTIMAEQLGIPKEII  360
             +   +F G     +P+S +++N A+  LGY +  +TGHGFR T  TI+ EQ G+    I
Sbjct  293  KHHPLVFIGRNDPRKPISKESINQAIELLGYKGR-LTGHGFRHTMSTILHEQ-GFNSAWI  350

Query  361  EAQLAHAVKDPLGRAYDRTVYLAQRGEMMQKWANYLDRLKA  401
            E QLAH  K+++  +Y++++YL  R EMMQ  A+Y+D L +
Sbjct  351  EMQLAHVDKNSIRDTYNHALYLDGRREMMQWYADYIDSLSS  391

409) Nit79A3_1833 in NC_015731


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  275 bits (1029),  Expect = 3e-75, Method: Compositional matrix adjust.
 Identities = 171/394 (44%), Positives = 273/394 (70%), Gaps = 4/394 (1%)

Query  1    MKLTDpeikaakpkekpYSLPDGHGLVLLVQPSGAKWWRYRYRFNGTAKMLSMGVYPDVT  60
            M LTD  +K+AKPK+KPY L+DG G+ LL++ +G+K WR +YRF G  KMLS+GVYPDVT
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   LKEARNQQARFKELLAQSIDPSLHRQEQKQQQAIATENSFESIARLWWNQWSAARNQRHA  120
            L +AR++++  + LLA + DP+  ++E+K  Q ++  N+FE+IAR W +  +  ++ R  
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  121  DYVIRRLEADIFPVIGRKPVTELSAPMLLMAIKKIEARGALDIAKRALTTCNQIMRYAVA  180
            D +I  +E DIFP IG++P++E+ +  LL A++K+E RGAL+  ++    C ++ RYA+ 
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  181  HGLAERNPAADIKPSDVLKPTTKTNYARLDQKELPELLRKIDAYDGQPLTKLALQLMALT  240
             G A+ NPA+D+  +  L    K +++ L  +ELP++L  + +Y G  +TK A Q++ LT
Sbjct  181  TGRADYNPAPDL--ASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLT  238

Query  241  FVRTSELIGAKWDEIELDNKQWRIPAECMKMKTPHIVPLSNQAIAVLGKIKELAADQILL  300
             VRT EL  A+W++I+++ K W IPAE MKMK PHIVPLS+Q I ++ ++  ++ ++ L+
Sbjct  239  GVRTQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHPLV  298

Query  301  FPSERRDGNSMSNNTILYALYRLGYHSRMTGHGFRGIASTILHERGYSHEHIELQLAHAK  360
            F +     +++S+++I  A+  LGY +R+TGHGFR   STILHE+G++   IE+QLAH  
Sbjct  299  FIGRNDPRKPISKESINQAIELLGYKGRLTGHGFRHTMSTILHEQGFNSAWIEMQLAHVD  358

Query  361  RDQVSASYNHALYLEPRARMMQDW-ADYLEAIRA  393
            ++ +  +YNHALYL+ R  MMQ W ADY++++ +
Sbjct  359  KNSIRDTYNHALYLDGRREMMQ-WYADYIDSLSS  391

410) MU9_117 in NC_020418


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  275 bits (1027),  Expect = 4e-75, Method: Compositional matrix adjust.
 Identities = 188/405 (47%), Positives = 283/405 (70%), Gaps = 24/405 (5%)

Query  1    MALTDAKVRAAKPLDKSYKLTDGDGMHLMVHTNGSKYWRLQYRFGGKQKMLALGVYPDIS  60
            MALTD KV++AKP DK+YKL+DG+GM L+++TNGSKYWR++YRF+GK+KML++GVYPD++
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   LaearekrdaarkLIANGFDPSekrkevkeeqqkeF-NTFEKVARDWHA-TNKKWSEGHS  118
            LA+AREKR  ARKL+A G DP+E +KE K  QQ  + NTFE +AR+WH     +WS    
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  119  HRVLKSLEDNIFAAIDKRNIAELKTRDLLEPIKAVEMSGRLGVAARLQQRVTGIMRYAVQ  178
            + ++ ++E +IF+ I+KR IAE+K   LLE+++ +E  G L    +++QR   + RYA+ 
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  179  SGLIDYNPAQDMAGAVATGKRVHRAALELKRLPEFLQRIDDYKGRPltklavkltllvFI  238
            +G  DYNPA D+A+A+AT K+VH + L  + LP+FL+ + +Y G  +TK A ++ +L  +
Sbjct  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV  240

Query  239  RSSELRFARWDEIDFENAMWTIPAEREAIEGVKHSHRGSKMRTPHLVPLSRQAIEILKQI  298
            R+ ELRFARW++IDFE  +W IPAE              KM+ PH+VPLS Q I ++KQ+
Sbjct  241  RTQELRFARWEDIDFETKLWEIPAE------------VMKMKRPHIVPLSEQVIMLFKQL  288

Query  299  YQFSGNHELIFIGDHNPRKPMSENTVNNALRVMGYDTKTEVCGHGFRTMACSSLIESGL-  357
              +S +H L+FIG ++PRKP+S +++N+A+ ++GY  K  + GHGFR    + L E G+ 
Sbjct  289  EPISKHHPLVFIGRNDPRKPISKESINQAIELLGY--KGRLTGHGFRHTMSTILHEQGFN  346

Query  358  --WSKDAVERQMSHQERNSVRAAYIHKAEHIEERRLMVQWWADFL  400
              W    +E Q++H ++NS+R +Y H A  ++ RR M+QW AD++
Sbjct  347  SAW----IEMQLAHVDKNSIRDTYNH-ALYLDGRREMMQWYADYI  386

411) ETAE_3092 in NC_013508


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  275 bits (1027),  Expect = 4e-75, Method: Compositional matrix adjust.
 Identities = 179/409 (44%), Positives = 261/409 (64%), Gaps = 27/409 (6%)

Query  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60
            M L   +V TAKPKDK YK+ADGGG+YL ++++GSKYWRMKYR ++  KE  L++GV P 
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAG--KEKMLSIGVYPD  58

Query  61   VTLAQARAKRDEAKKLLVQGIDPKAEQKEAQAENSGAY--TFETIAREWHD-SNKRWSED  117
            VTLA+AR KR EA+KLL  G DP   +KE +  +  +   TFE+IAREWH+    RWS  
Sbjct  59   VTLADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLR  118

Query  118  HRSRVLRYLELYIFPHIGSSDIRQLKTSYLLAPIKKVDASGKHDVAQRLQQRVTAIMRYA  177
             R  ++  +E  IFP IG   I ++K   LL +++K++  G  +  ++++QR   + RYA
Sbjct  119  YRDEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYA  178

Query  178  VQNDYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLDAYRGRVMTRIAVELSLLT  237
            +  +  D NPA+D+A+AL+T K  H+P L ++ +P+FL  L +Y G ++T+ A ++ +LT
Sbjct  179  IVTGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLT  238

Query  238  FVRSSELRFARWDEFDFDKSLWRIPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMILLD  297
             VR+ ELRFARW+++DF+  LW IPA              MKMK  HIVPLS Q ++L+ 
Sbjct  239  GVRTQELRFARWEDIDFETKLWEIPAE------------VMKMKRPHIVPLSEQVIMLFK  286

Query  298  QLKQISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESG  357
            QL  IS +  L+F G +D+ K +S +++N A+  +GY  K  + GHGFR      L E G
Sbjct  287  QLEPISKHHPLVFIGRNDPRKPISKESINQAIELLGY--KGRLTGHGFRHTMSTILHEQG  344

Query  358  L---WSDDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDS  403
            +   W    IE QL+H ++N++R +Y H+   LD RR M+QW ADY+DS
Sbjct  345  FNSAW----IEMQLAHVDKNSIRDTYNHAL-YLDGRREMMQWYADYIDS  388

412) ECABU_c49370 in NC_017631


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  274 bits (1025),  Expect = 4e-75, Method: Compositional matrix adjust.
 Identities = 158/359 (45%), Positives = 243/359 (68%), Gaps = 16/359 (4%)

Query  1    MALTDTKVRSAKPEEKEYSLVDGDGMSLLVKPGGSKYWRFRFRFGGKQHLMAFGVYPDVS  60
            MALTD KV++AKP +K Y L DG+GM LL++  GSKYWR ++RF+GK+ ++++GVYPDV+
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   LADARKKREEARKLVTAGIDPREHKRAVKEEQAKEI-ITFEKVAREW-LVTNQKWSEDHA  118
            LADAR KR EARKL++AG DP E K+  K  Q   +  TFE +AREW  +  ++WS    
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  119  NRVKKSLEDNIFPTIGARNIAELGTRDLLIPIKAVEKSGRLEVASRLQQRTTAIMRYAVQ  178
            + +  ++E +IFP IG R IAE+    LL +++ +EK G LE   +++QR   + RYA+ 
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  179  SGLIDYNPAQEMAGAVASSNRQHRPALELKRIPELLQKIDDYTGRPLTRWATELTLLIFI  238
            +G  DYNPA ++A+A+A++++ H P L  + +P++L+ + +YTG  +T+ AT++ +L  +
Sbjct  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV  240

Query  239  RSSELRFARWSEIDFETSMWTIPPEREPIPGVKHSQRGSKMRTPHLVPLSKQALAILKQI  298
            R+ ELRFARW +IDFET +W IP+E              KM+ PH+VPLS Q + ++KQ+
Sbjct  241  RTQELRFARWEDIDFETKLWEIPAE------------VMKMKRPHIVPLSEQVIMLFKQL  288

Query  299  KQFCGEHELIFIGDHDPRKPMSENTVNSALRVMGYDTKVEVCGHGFRTMACSSLIESGL  357
              +  +H L+FIG +DPRKP+S +++N A+ ++GY  +  + GHGFR    + L E G+
Sbjct  289  EPISKHHPLVFIGRNDPRKPISKESINQAIELLGYKGR--LTGHGFRHTMSTILHEQGF  345

413) intA_4 in NC_022370


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  274 bits (1025),  Expect = 5e-75, Method: Compositional matrix adjust.
 Identities = 179/408 (44%), Positives = 260/408 (64%), Gaps = 27/408 (6%)

Query  1    MKLNARQVETAKPKEKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60
            M L   +V TAKPK+K YK+ADGGG+YL ++++GSKYWRMKYR ++  KE  L++GV P 
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAG--KEKMLSIGVYPD  58

Query  61   VTLAQARAKRDEAKKLLVQGIDPKTEQKQAHAENSGAY--TFETIAREWHA-SNKRWSED  117
            VTLA+AR KR EA+KLL  G DP   +K+    +  +   TFE+IAREWH     RWS  
Sbjct  59   VTLADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLR  118

Query  118  HRSRVLRYLELYIFPHIGSSDIRLLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYA  177
             R  ++  +E  IFP IG   I  +K   LL +++K++  G  +  ++++QR   + RYA
Sbjct  119  YRDEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYA  178

Query  178  VQNDYIDSNPASDMAGALSTTKVRHYPALPSSRLPEFLSRLAAYRGRVMTRIAVELSLLT  237
            +  +  D NPA+D+A+AL+T K  H+P L ++ LP+FL+ LA+Y G ++T+ A ++ +LT
Sbjct  179  IVTGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLT  238

Query  238  FVRSSELRFARWNEFDFDKALWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMNLLG  297
             VR+ ELRFARW+++DF+  LW +PA              MKMK  HIVPLS Q + L+ 
Sbjct  239  GVRTQELRFARWEDIDFETKLWEIPAE------------VMKMKRPHIVPLSEQVIMLFK  286

Query  298  QLKQISGDRKLLFPGDHDATKVMSENTVNNALRAMGYDTKTEVCGHGFRTMARGALGESG  357
            QL  IS ++ L+F G +D+ K +S +++N+A+  +GY  K  + GHGFR      L E G
Sbjct  287  QLEPISKHHPLVFIGRNDPRKPISKESINQAIELLGY--KGRLTGHGFRHTMSTILHEQG  344

Query  358  L---WSDDAIERQLSHSERNNVRAAYIHTSEHLDERRLMMQWWADYID  402
            +   W    IE QL+H ++N++R +Y H+   LD RR MMQW ADYID
Sbjct  345  FNSAW----IEMQLAHVDKNSIRDTYNHAL-YLDGRREMMQWYADYID  387

414) Pcar_1823 in NC_007498


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  274 bits (1025),  Expect = 6e-75, Method: Compositional matrix adjust.
 Identities = 167/402 (42%), Positives = 261/402 (65%), Gaps = 13/402 (3%)

Query  7    PLSATKVKKAKPAEKQYTLFDGQGLFLLVTPTGSKLWRFKYRLNGKPKLMSFGAYPEVSL  66
            +L+  KVK AKP +K Y L DG G++LL+   GSK WR KYR+ GK K++S+G YP+V+L
Sbjct  2    ALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVTL  61

Query  67   EQAREKRTAARKQVANGIDPCVVRRAVKESQAAG-EGSFEVVAREWHQKFSSTWSESHAK  125
             +AREKR+ ARK +A G DP   ++  K +Q  +   +FE +AREWHQ  +  WS     
Sbjct  62   ADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYRD  121

Query  126  TQLGRMERDLFPWLGDRPIVEITSPELLAVLRRIESRGALETAHRVKTICGQIFRYAIAT  185
              ++  E+D+FP +G RPI EI +  LL  LR++E RGALE  ++V+  CG++FRYAI T
Sbjct  122  EIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIVT  181

Query  186  GRAERDPAADLKGALPPVQATHHAAMTKPGDLADLLRTIDAYEGSHVVRCALRFAPLVFV  245
            GRA+ +PA+DL +AL+  +  H + +T + +L+++L  + +Y GS + + A ++  L  V
Sbjct  182  GRADYNPAPDLASALATPKKVHFPFLT-ANELPHFLNDLAGYTGSIITKTATQIIMLTGV  240

Query  246  RPGELRQAEWSEFDLDAGEWNIPVERMKLPKKTKIRRAGEAHLVPLSKQAVEILRDLQPL  305
            R  ELR A W ++D+++  W+IP E MK+ +         +H+VPLS Q + ++++L+P+
Sbjct  241  RTQELRFARWEDIDFETKLWEIPAEVMKMKR---------PHIVPLSEQVIMLFKQLEPI  291

Query  306  TGDGLYVFPSVRSAGRPMSDNTINAALRRLGYSKDEATGHGFRATARTILDEVLQVRPDL  365
            + +   VF +   + +P+S ++IN A+  LGY K+  TGHGFR T  TIL+E     +  
Sbjct  292  SKHHPLVFIGRNDPRKPISKESINQAIELLGY-KGRLTGHGFRHTMSTILHEQ-GFNSAW  349

Query  366  IEHQLAHSVRDPLGRAYNRTSFLPERREMMQLWADYLDGLKA  407
            IE QLAH  ++++  +YN++ +L  RREMMQ  ADY+D+L +
Sbjct  350  IEMQLAHVDKNSIRDTYNHALYLDGRREMMQWYADYIDSLSS  391

415) Cpha266_1627 in NC_008639


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  273 bits (1020),  Expect = 1e-74, Method: Compositional matrix adjust.
 Identities = 175/397 (45%), Positives = 264/397 (67%), Gaps = 9/397 (2%)

Query  6    LPLSDAQVSKAKPAEKDYKLSDGGGLHLLVTTSGGKLWRFQYRFDGKQKLLALGQYPEIS  65
            ++L+D +V  AKP +K YKL+DGGG+ LL+ T+G+K WR +YRF GK+K+L++G YP+++
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  66   LANARKRREEARTLLANEQDPSeakkaakkaealkDASSFELVAREWFGKNDPVWSPGHA  125
            LA+AR +R EAR LLA   DP+EAKK  K A+ +   ++FE +AREW   +   WS    
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  126  LTVMCRLEKDVFPAIGSKPVSEITASDIRTMLLKIEARGAVETATRIKIMCGQVFRYAVA  185
              ++  +EKD+FP IG +P++EI +  +   L K+E RGA+E   +++  CG+VFRYA+ 
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  186  TGRLEHDPSAALKSREIFRKREIRHHAAITDPKELAPLLMAIDEYQGTFVVKSALQLTPL  245
            TGR + +P++ L S     K+    H ++  ++EL+ +L  +  Y G+++ K+A Q+  L
Sbjct  181  TGRADYNPAPDLASALATPKKV---HFPFLTANELPHFLNDLAGYTGSIITKTATQIIML  237

Query  246  LFVRPGELQNMEWSDIDFEEALWSIPAERMKMRQPHLVPLSRQSLSILQGLHPATGHGRY  305
              VR  EL+   W DIDFE  LW IPAE MKM++PH+VPLS Q + +++ L+P + H   
Sbjct  238  TGVRTQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHPL  297

Query  306  VFTGRGS--RPMSNNSINAALRYLGYDSDTVTGHGFRATARTILDEVLGFRVDLIEHQLA  363
            VF GR    +P+S++SIN A+  LGY +  +TGHGFR T  TIL+E  GF    IE QLA
Sbjct  298  VFIGRNDPRKPISKESINQAIELLGYKG-RLTGHGFRHTMSTILHEQ-GFNSAWIEMQLA  355

Query  364  HAVRDPNGRAYNRTSFLDDRRQMMQAW-ADYLYSLKA  399
            H  +++   +YN++ +LD+RR+MMQ W ADY+ SL +
Sbjct  356  HVDKNSIRDTYNHALYLDGRREMMQ-WYADYIDSLSS  391

416) Varpa_2722 in NC_014931


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  273 bits (1021),  Expect = 1e-74, Method: Compositional matrix adjust.
 Identities = 162/385 (43%), Positives = 263/385 (69%), Gaps = 5/385 (1%)

Query  1    MALTDMAARKAKPEVRSYNLTDGAGLYLQVTPAGGKLWRWNYRHDGKQKTMAFGSYPEVS  60
            MALTD+  + AKP  ++Y+L+DG+G+YL +   G+K WR +YR  GK+K +++G YP+V+
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   IADAREAHQAARKQKAAGADPMAQRKLDKIAGVMAREHSFKAIAQQWHDQWKPNK-AERH  119
            +ADARE +  ARK  AAG+DP   +K +KIA  M+  ++F AIA++WH Q K+++ + R 
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWH-QLKADRWSLRY  119

Query  120  ARIVWGRLENDVFPAIGARPISEVKPSELVAMIKKIAGRGAPDMAKRCLEISGQVFRYAV  179
               + + +E+D+FP IG RPI+E+KP  L+  ++K+  RGA +  ++  +  G+VFRYA+
Sbjct  120  RDEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAI  179

Query  180  AHGISERNPAADIKPGDVLPPRKTNHFARVESSELPDLLRKIEAYSGTPATRLAMKLMAY  239
              G ++ NPA+D+  +  L+  K  HF+ + ++ELP++L  + +Y+G+  T+ A +++  
Sbjct  180  VTGRADYNPAPDL--ASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIML  237

Query  240  TFVRTGELIGARWPEFDLDAAVWRIPPERMKMKTLHIVPLSTQAVEVLRTLQLVTGDSAL  299
            T VRT EL  ARW ++D+++ +W IP+E MKMK  HIVPLS Q + +++ L+ ++ + +L
Sbjct  238  TGVRTQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHPL  297

Query  300  LFPGERDHEKSISNNTILGALKRMGYAGRMTGHGFRGVASTELHEMGFEEAHIEAQMSHL  359
            +F G  D  K+IS+++I  A+  +GY GR+TGHGFR   ST LHE GF+ A IE Q++H+
Sbjct  298  VFIGRNDPRKPISKESINQAIELLGYKGRLTGHGFRHTMSTILHEQGFNSAWIEMQLAHV  357

Query  360  KRNRVASAYDHSKYLKQRVAMMQTW  384
             +N +  +Y+H+ YL  R  MMQ W
Sbjct  358  DKNSIRDTYNHALYLDGRREMMQ-W  381

417) EcDH1_3727 in NC_017625


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  273 bits (1020),  Expect = 1e-74, Method: Compositional matrix adjust.
 Identities = 156/381 (41%), Positives = 251/381 (66%), Gaps = 25/381 (6%)

Query  1    MHLLVHPNGSKYWRLQYRYEGKQKMLALGVYPEITLADARVRRDEARKLLANGVDPGDKK  60
            M LL++ NGSKYWR++YR+ GK+KML++GVYP++TLADAR +R EARKLLA G DPG+ K
Sbjct  26   MYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVTLADAREKRSEARKLLAAGGDPGEAK  85

Query  61   KNDKVEQSKA--RTFKEVAIEWHG-TNKKWSEDHAHRVLKSLEDNLFAALGERNIAELKT  117
            K++K+ Q  +   TF  +A EWH     +WS    + ++ ++E ++F+ +G R IAE+K 
Sbjct  86   KEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYRDEIIDTFEKDIFPYIGKRPIAEIKP  145

Query  118  RDLLAPIKAVEMSGRLEVAARLQQRTTAIMRYAVQSGLIDYNPAQEMAGAVASCNRQHRP  177
              LL +++ +E  G LE   +++QR   + RYA+ +G  DYNPA ++A+A+A+ ++ H P
Sbjct  146  MKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIVTGRADYNPAPDLASALATPKKVHFP  205

Query  178  ALELKRIPELLTKIDSYTGRPLTRWAIELTLLIFIRSSELRFARWSEIDFEASIWTIPPE  237
             L  + +P++L  + +YTG  +T+ A ++ +L  +R+ ELRFARW +IDFE+ +W IP+E
Sbjct  206  FLTANELPHFLNDLAGYTGSIITKTATQIIMLTGVRTQELRFARWEDIDFETKLWEIPAE  265

Query  238  REPIPGVKHSHRGSKMRTTHLVPLSTQALAILKQIKQFYGAHDLIFIGDHDSHKPMSENT  297
                          KM+  H+VPLS Q + ++KQ+  +   H L+FIG +D++KP+S ++
Sbjct  266  ------------VMKMKRPHIVPLSEQVIMLFKQLEPISKHHPLVFIGRNDPRKPISKES  313

Query  298  VNSALRVMGYDTKVEVCGHGFRTMACSSLVESGL---WSRDAVERQMSHMARNSVRAAYI  354
            +N A+ ++GY  +  + GHGFR    + L E G+   W    +E Q++H+ +NS+R +Y 
Sbjct  314  INQAIELLGYKGR--LTGHGFRHTMSTILHEQGFNSAW----IEMQLAHVDKNSIRDTYN  367

Query  355  HKAEHLEERRLMLQWWADFLD  375
            H A  L+ RR M+QW AD++D
Sbjct  368  H-ALYLDGRREMMQWYADYID  387

418) intB in NC_017638


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  273 bits (1020),  Expect = 1e-74, Method: Compositional matrix adjust.
 Identities = 156/381 (41%), Positives = 251/381 (66%), Gaps = 25/381 (6%)

Query  1    MHLLVHPNGSKYWRLQYRYEGKQKMLALGVYPEITLADARVRRDEARKLLANGVDPGDKK  60
            M LL++ NGSKYWR++YR+ GK+KML++GVYP++TLADAR +R EARKLLA G DPG+ K
Sbjct  26   MYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVTLADAREKRSEARKLLAAGGDPGEAK  85

Query  61   KNDKVEQSKA--RTFKEVAIEWHG-TNKKWSEDHAHRVLKSLEDNLFAALGERNIAELKT  117
            K++K+ Q  +   TF  +A EWH     +WS    + ++ ++E ++F+ +G R IAE+K 
Sbjct  86   KEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYRDEIIDTFEKDIFPYIGKRPIAEIKP  145

Query  118  RDLLAPIKAVEMSGRLEVAARLQQRTTAIMRYAVQSGLIDYNPAQEMAGAVASCNRQHRP  177
              LL +++ +E  G LE   +++QR   + RYA+ +G  DYNPA ++A+A+A+ ++ H P
Sbjct  146  MKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIVTGRADYNPAPDLASALATPKKVHFP  205

Query  178  ALELKRIPELLTKIDSYTGRPLTRWAIELTLLIFIRSSELRFARWSEIDFEASIWTIPPE  237
             L  + +P++L  + +YTG  +T+ A ++ +L  +R+ ELRFARW +IDFE+ +W IP+E
Sbjct  206  FLTANELPHFLNDLAGYTGSIITKTATQIIMLTGVRTQELRFARWEDIDFETKLWEIPAE  265

Query  238  REPIPGVKHSHRGSKMRTTHLVPLSTQALAILKQIKQFYGAHDLIFIGDHDSHKPMSENT  297
                          KM+  H+VPLS Q + ++KQ+  +   H L+FIG +D++KP+S ++
Sbjct  266  ------------VMKMKRPHIVPLSEQVIMLFKQLEPISKHHPLVFIGRNDPRKPISKES  313

Query  298  VNSALRVMGYDTKVEVCGHGFRTMACSSLVESGL---WSRDAVERQMSHMARNSVRAAYI  354
            +N A+ ++GY  +  + GHGFR    + L E G+   W    +E Q++H+ +NS+R +Y 
Sbjct  314  INQAIELLGYKGR--LTGHGFRHTMSTILHEQGFNSAW----IEMQLAHVDKNSIRDTYN  367

Query  355  HKAEHLEERRLMLQWWADFLD  375
            H A  L+ RR M+QW AD++D
Sbjct  368  H-ALYLDGRREMMQWYADYID  387

419) intB in NC_010473


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  273 bits (1020),  Expect = 1e-74, Method: Compositional matrix adjust.
 Identities = 156/381 (41%), Positives = 251/381 (66%), Gaps = 25/381 (6%)

Query  1    MHLLVHPNGSKYWRLQYRYEGKQKMLALGVYPEITLADARVRRDEARKLLANGVDPGDKK  60
            M LL++ NGSKYWR++YR+ GK+KML++GVYP++TLADAR +R EARKLLA G DPG+ K
Sbjct  26   MYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVTLADAREKRSEARKLLAAGGDPGEAK  85

Query  61   KNDKVEQSKA--RTFKEVAIEWHG-TNKKWSEDHAHRVLKSLEDNLFAALGERNIAELKT  117
            K++K+ Q  +   TF  +A EWH     +WS    + ++ ++E ++F+ +G R IAE+K 
Sbjct  86   KEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYRDEIIDTFEKDIFPYIGKRPIAEIKP  145

Query  118  RDLLAPIKAVEMSGRLEVAARLQQRTTAIMRYAVQSGLIDYNPAQEMAGAVASCNRQHRP  177
              LL +++ +E  G LE   +++QR   + RYA+ +G  DYNPA ++A+A+A+ ++ H P
Sbjct  146  MKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIVTGRADYNPAPDLASALATPKKVHFP  205

Query  178  ALELKRIPELLTKIDSYTGRPLTRWAIELTLLIFIRSSELRFARWSEIDFEASIWTIPPE  237
             L  + +P++L  + +YTG  +T+ A ++ +L  +R+ ELRFARW +IDFE+ +W IP+E
Sbjct  206  FLTANELPHFLNDLAGYTGSIITKTATQIIMLTGVRTQELRFARWEDIDFETKLWEIPAE  265

Query  238  REPIPGVKHSHRGSKMRTTHLVPLSTQALAILKQIKQFYGAHDLIFIGDHDSHKPMSENT  297
                          KM+  H+VPLS Q + ++KQ+  +   H L+FIG +D++KP+S ++
Sbjct  266  ------------VMKMKRPHIVPLSEQVIMLFKQLEPISKHHPLVFIGRNDPRKPISKES  313

Query  298  VNSALRVMGYDTKVEVCGHGFRTMACSSLVESGL---WSRDAVERQMSHMARNSVRAAYI  354
            +N A+ ++GY  +  + GHGFR    + L E G+   W    +E Q++H+ +NS+R +Y 
Sbjct  314  INQAIELLGYKGR--LTGHGFRHTMSTILHEQGFNSAW----IEMQLAHVDKNSIRDTYN  367

Query  355  HKAEHLEERRLMLQWWADFLD  375
            H A  L+ RR M+QW AD++D
Sbjct  368  H-ALYLDGRREMMQWYADYID  387

420) intB in NC_007779


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  273 bits (1020),  Expect = 1e-74, Method: Compositional matrix adjust.
 Identities = 156/381 (41%), Positives = 251/381 (66%), Gaps = 25/381 (6%)

Query  1    MHLLVHPNGSKYWRLQYRYEGKQKMLALGVYPEITLADARVRRDEARKLLANGVDPGDKK  60
            M LL++ NGSKYWR++YR+ GK+KML++GVYP++TLADAR +R EARKLLA G DPG+ K
Sbjct  26   MYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVTLADAREKRSEARKLLAAGGDPGEAK  85

Query  61   KNDKVEQSKA--RTFKEVAIEWHG-TNKKWSEDHAHRVLKSLEDNLFAALGERNIAELKT  117
            K++K+ Q  +   TF  +A EWH     +WS    + ++ ++E ++F+ +G R IAE+K 
Sbjct  86   KEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYRDEIIDTFEKDIFPYIGKRPIAEIKP  145

Query  118  RDLLAPIKAVEMSGRLEVAARLQQRTTAIMRYAVQSGLIDYNPAQEMAGAVASCNRQHRP  177
              LL +++ +E  G LE   +++QR   + RYA+ +G  DYNPA ++A+A+A+ ++ H P
Sbjct  146  MKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIVTGRADYNPAPDLASALATPKKVHFP  205

Query  178  ALELKRIPELLTKIDSYTGRPLTRWAIELTLLIFIRSSELRFARWSEIDFEASIWTIPPE  237
             L  + +P++L  + +YTG  +T+ A ++ +L  +R+ ELRFARW +IDFE+ +W IP+E
Sbjct  206  FLTANELPHFLNDLAGYTGSIITKTATQIIMLTGVRTQELRFARWEDIDFETKLWEIPAE  265

Query  238  REPIPGVKHSHRGSKMRTTHLVPLSTQALAILKQIKQFYGAHDLIFIGDHDSHKPMSENT  297
                          KM+  H+VPLS Q + ++KQ+  +   H L+FIG +D++KP+S ++
Sbjct  266  ------------VMKMKRPHIVPLSEQVIMLFKQLEPISKHHPLVFIGRNDPRKPISKES  313

Query  298  VNSALRVMGYDTKVEVCGHGFRTMACSSLVESGL---WSRDAVERQMSHMARNSVRAAYI  354
            +N A+ ++GY  +  + GHGFR    + L E G+   W    +E Q++H+ +NS+R +Y 
Sbjct  314  INQAIELLGYKGR--LTGHGFRHTMSTILHEQGFNSAW----IEMQLAHVDKNSIRDTYN  367

Query  355  HKAEHLEERRLMLQWWADFLD  375
            H A  L+ RR M+QW AD++D
Sbjct  368  H-ALYLDGRREMMQWYADYID  387

421) intB in NC_011751


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  273 bits (1020),  Expect = 1e-74, Method: Compositional matrix adjust.
 Identities = 156/381 (41%), Positives = 251/381 (66%), Gaps = 25/381 (6%)

Query  1    MHLLVHPNGSKYWRLQYRYEGKQKMLALGVYPEITLADARVRRDEARKLLANGVDPGDKK  60
            M LL++ NGSKYWR++YR+ GK+KML++GVYP++TLADAR +R EARKLLA G DPG+ K
Sbjct  26   MYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVTLADAREKRSEARKLLAAGGDPGEAK  85

Query  61   KNDKVEQSKA--RTFKEVAIEWHG-TNKKWSEDHAHRVLKSLEDNLFAALGERNIAELKT  117
            K++K+ Q  +   TF  +A EWH     +WS    + ++ ++E ++F+ +G R IAE+K 
Sbjct  86   KEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYRDEIIDTFEKDIFPYIGKRPIAEIKP  145

Query  118  RDLLAPIKAVEMSGRLEVAARLQQRTTAIMRYAVQSGLIDYNPAQEMAGAVASCNRQHRP  177
              LL +++ +E  G LE   +++QR   + RYA+ +G  DYNPA ++A+A+A+ ++ H P
Sbjct  146  MKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIVTGRADYNPAPDLASALATPKKVHFP  205

Query  178  ALELKRIPELLTKIDSYTGRPLTRWAIELTLLIFIRSSELRFARWSEIDFEASIWTIPPE  237
             L  + +P++L  + +YTG  +T+ A ++ +L  +R+ ELRFARW +IDFE+ +W IP+E
Sbjct  206  FLTANELPHFLNDLAGYTGSIITKTATQIIMLTGVRTQELRFARWEDIDFETKLWEIPAE  265

Query  238  REPIPGVKHSHRGSKMRTTHLVPLSTQALAILKQIKQFYGAHDLIFIGDHDSHKPMSENT  297
                          KM+  H+VPLS Q + ++KQ+  +   H L+FIG +D++KP+S ++
Sbjct  266  ------------VMKMKRPHIVPLSEQVIMLFKQLEPISKHHPLVFIGRNDPRKPISKES  313

Query  298  VNSALRVMGYDTKVEVCGHGFRTMACSSLVESGL---WSRDAVERQMSHMARNSVRAAYI  354
            +N A+ ++GY  +  + GHGFR    + L E G+   W    +E Q++H+ +NS+R +Y 
Sbjct  314  INQAIELLGYKGR--LTGHGFRHTMSTILHEQGFNSAW----IEMQLAHVDKNSIRDTYN  367

Query  355  HKAEHLEERRLMLQWWADFLD  375
            H A  L+ RR M+QW AD++D
Sbjct  368  H-ALYLDGRREMMQWYADYID  387

422) ECO26_5435 in NC_013361


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  273 bits (1022),  Expect = 9e-75, Method: Compositional matrix adjust.
 Identities = 176/409 (44%), Positives = 261/409 (64%), Gaps = 27/409 (6%)

Query  1    MKLNARQVETAKPKEKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPM  60
            M L   +V TAKPK+K YK+ADGGG+YL ++++GSKYWRMKYR ++  KE  L++GV P 
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAG--KEKMLSIGVYPD  58

Query  61   VTLAQARAKRDEAKKLLVQGIDPKAEQKEAQAENSGAY--TFETIAREWHA-SNKRWSED  117
            VTLA+AR KR EA+KLL  G DP   +KE +  +  +   TFE+IAREWH     RWS  
Sbjct  59   VTLADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLR  118

Query  118  HRSRILRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYA  177
             R  I+  +E  IFP IG   I ++K   LL +++K++  G  +  ++++QR   + RYA
Sbjct  119  YRDEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYA  178

Query  178  VQNDYIDSNPASDMAGALSTTKARHYPALPSSRFSEFLARLAAYRGRVMTRIAVELSLLT  237
            +  +  D NPA+D+A+AL+T K  H+P L ++ +++FL  LA+Y G ++T+ A ++ +LT
Sbjct  179  IVTGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLT  238

Query  238  FVRSSELRFARWDEFDFDKSLWRIPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLE  297
             VR+ ELRFARW+++DF+  LW IPA              MKMK  HIVPLS Q ++L+ 
Sbjct  239  GVRTQELRFARWEDIDFETKLWEIPAE------------VMKMKRPHIVPLSEQVIMLFK  286

Query  298  QLKQISGDKELLFPGDHDAAKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESG  357
            QL  IS +  L+F G +D+ K +S +++N A+  +GY  K  + GHGFR      L E G
Sbjct  287  QLEPISKHHPLVFIGRNDPRKPISKESINQAIELLGY--KGRLTGHGFRHTMSTILHEQG  344

Query  358  L---WSDDAIERQLSHTERNNVRAAYIHTSEHLDERRLMVQWWADFLEA  403
            +   W    IE QL+H ++N++R +Y H+   LD RR M+QW AD++++
Sbjct  345  FNSAW----IEMQLAHVDKNSIRDTYNHAL-YLDGRREMMQWYADYIDS  388

423) ETEC_4611 in NC_017633


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  272 bits (1019),  Expect = 1e-74, Method: Compositional matrix adjust.
 Identities = 155/381 (41%), Positives = 252/381 (67%), Gaps = 25/381 (6%)

Query  1    MHLLVHPNGSKYWRLQYRYEGKQKMLALGVYPEITLADARVRRDEARNLLANGVDPGDKK  60
            M LL++ NGSKYWR++YR+ GK+KML++GVYP++TLADAR +R EAR+LLA G DPG+ K
Sbjct  26   MYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVTLADAREKRSEARKLLAAGGDPGEAK  85

Query  61   KNDKVEQSKA--RTFKEVAIEWHG-TNKKWSEDHAHRVLKSLEDNLFAALGERNIAELKT  117
            K++K+ Q  +   TF  +A EWH     +WS    + ++ ++E ++F+ +G R IAE+K 
Sbjct  86   KEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYRDEIIDTFEKDIFPYIGKRPIAEIKP  145

Query  118  RDLLAPIKAVEMSGRLEVAARLQQRTTAIMRYAVQSGLIDYNPAQEMAGAVASCNRQHRP  177
              LL +++ +E  G LE   +++QR   + RYA+ +G  DYNPA ++A+A+A+ ++ H P
Sbjct  146  MKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIVTGRADYNPAPDLASALATPKKVHFP  205

Query  178  ALELKRIPELLTKIDSYTGRPLTRWAIELTLLIFIRSSELRFARWSEIDFEASIWTIPPE  237
             L  + +P++L  + +YTG  +T+ A ++ +L  +R+ ELRFARW +IDFE+ +W IP+E
Sbjct  206  FLTANELPHFLNDLAGYTGSIITKTATQIIMLTGVRTQELRFARWEDIDFETKLWEIPAE  265

Query  238  REPIPGVKHSHRGSKMRTTHLVPLSTQALAILKQIKQFYGAHDLIFIGDHDSHKPMSENT  297
                          KM+  H+VPLS Q + ++KQ+  +   H L+FIG +D++KP+S ++
Sbjct  266  ------------VMKMKRPHIVPLSEQVIMLFKQLEPISKHHPLVFIGRNDPRKPISKES  313

Query  298  VNSALRVMGYDTKVEVCGHGFRTMACSSLVESGL---WSRDAVERQMSHMERNSVRAAYI  354
            +N A+ ++GY  +  + GHGFR    + L E G+   W    +E Q++H+++NS+R +Y 
Sbjct  314  INQAIELLGYKGR--LTGHGFRHTMSTILHEQGFNSAW----IEMQLAHVDKNSIRDTYN  367

Query  355  HKAEHLEERRLMLQWWADFLD  375
            H A  L+ RR M+QW AD++D
Sbjct  368  H-ALYLDGRREMMQWYADYID  387

424) intB in NC_011750


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  272 bits (1019),  Expect = 1e-74, Method: Compositional matrix adjust.
 Identities = 155/381 (41%), Positives = 252/381 (67%), Gaps = 25/381 (6%)

Query  1    MHLLVHPNGSKYWRLQYRYEGKQKMLALGVYPEITLADARVRRDEARNLLANGVDPGDKK  60
            M LL++ NGSKYWR++YR+ GK+KML++GVYP++TLADAR +R EAR+LLA G DPG+ K
Sbjct  26   MYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVTLADAREKRSEARKLLAAGGDPGEAK  85

Query  61   KNDKVEQSKA--RTFKEVAIEWHG-TNKKWSEDHAHRVLKSLEDNLFAALGERNIAELKT  117
            K++K+ Q  +   TF  +A EWH     +WS    + ++ ++E ++F+ +G R IAE+K 
Sbjct  86   KEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYRDEIIDTFEKDIFPYIGKRPIAEIKP  145

Query  118  RDLLAPIKAVEMSGRLEVAARLQQRTTAIMRYAVQSGLIDYNPAQEMAGAVASCNRQHRP  177
              LL +++ +E  G LE   +++QR   + RYA+ +G  DYNPA ++A+A+A+ ++ H P
Sbjct  146  MKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIVTGRADYNPAPDLASALATPKKVHFP  205

Query  178  ALELKRIPELLTKIDSYTGRPLTRWAIELTLLIFIRSSELRFARWSEIDFEASIWTIPPE  237
             L  + +P++L  + +YTG  +T+ A ++ +L  +R+ ELRFARW +IDFE+ +W IP+E
Sbjct  206  FLTANELPHFLNDLAGYTGSIITKTATQIIMLTGVRTQELRFARWEDIDFETKLWEIPAE  265

Query  238  REPIPGVKHSHRGSKMRTTHLVPLSTQALAILKQIKQFYGAHDLIFIGDHDSHKPMSENT  297
                          KM+  H+VPLS Q + ++KQ+  +   H L+FIG +D++KP+S ++
Sbjct  266  ------------VMKMKRPHIVPLSEQVIMLFKQLEPISKHHPLVFIGRNDPRKPISKES  313

Query  298  VNSALRVMGYDTKVEVCGHGFRTMACSSLVESGL---WSRDAVERQMSHMERNSVRAAYI  354
            +N A+ ++GY  +  + GHGFR    + L E G+   W    +E Q++H+++NS+R +Y 
Sbjct  314  INQAIELLGYKGR--LTGHGFRHTMSTILHEQGFNSAW----IEMQLAHVDKNSIRDTYN  367

Query  355  HKAEHLEERRLMLQWWADFLD  375
            H A  L+ RR M+QW AD++D
Sbjct  368  H-ALYLDGRREMMQWYADYID  387

425) c5371 in NC_004431


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  272 bits (1017),  Expect = 2e-74, Method: Compositional matrix adjust.
 Identities = 157/359 (44%), Positives = 243/359 (68%), Gaps = 16/359 (4%)

Query  27   MALTDTKVRSAKPEEKEYSLVDGDGMSLLVKPGGSKYWRFRFRFGGKQHLMAFGVYPDVS  86
            MALTD KV++AKP +K Y L DG+GM LL++  GSKYWR ++RF+GK+ ++++GVYPDV+
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  87   LADARKKREEARKLVTAGIDPREHKRAVKEEQAKEI-ITFEKVAREW-LVTNQKWSEDHA  144
            LADAR KR EARKL++AG DP E K+  K  Q   +  TFE +AREW  +  ++WS    
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  145  NRVKKSLEDNIFPTIGARNIAELGTRDLLIPIKAVEKSGRLEVASRLQQRTTAIMRYAVQ  204
            + +  ++E +IFP IG R IAE+    LL +++ +EK G LE   +++QR   + RYA+ 
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  205  SGLIDYNPAQEMAGAVASSNRQHRPALELKRIPELLQKIDDYTGRPLTRWATELTLLIFI  264
            +G  DYNPA ++A+A+A++++ H P L  + +P++L+ + +YTG  +T+ AT++ +L  +
Sbjct  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV  240

Query  265  RSSELRFARWSEIDFETSMWTIPPEREPIPGVKHSQRGSKMRTPHLVPFSKQALAILKQI  324
            R+ ELRFARW +IDFET +W IP+E              KM+ PH+VP+S Q + ++KQ+
Sbjct  241  RTQELRFARWEDIDFETKLWEIPAE------------VMKMKRPHIVPLSEQVIMLFKQL  288

Query  325  KQFCGEHELIFIGDHDPRKPMSENTVNSALRVMGYDTKVEVCGHGFRTMACSSLIESGL  383
              +  +H L+FIG +DPRKP+S +++N A+ ++GY  +  + GHGFR    + L E G+
Sbjct  289  EPISKHHPLVFIGRNDPRKPISKESINQAIELLGYKGR--LTGHGFRHTMSTILHEQGF  345

426) i14_4891 in NC_017652


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  272 bits (1017),  Expect = 2e-74, Method: Compositional matrix adjust.
 Identities = 157/359 (44%), Positives = 243/359 (68%), Gaps = 16/359 (4%)

Query  27   MALTDTKVRSAKPEEKEYSLVDGDGMSLLVKPGGSKYWRFRFRFGGKQHLMAFGVYPDVS  86
            MALTD KV++AKP +K Y L DG+GM LL++  GSKYWR ++RF+GK+ ++++GVYPDV+
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  87   LADARKKREEARKLVTAGIDPREHKRAVKEEQAKEI-ITFEKVAREW-LVTNQKWSEDHA  144
            LADAR KR EARKL++AG DP E K+  K  Q   +  TFE +AREW  +  ++WS    
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  145  NRVKKSLEDNIFPTIGARNIAELGTRDLLIPIKAVEKSGRLEVASRLQQRTTAIMRYAVQ  204
            + +  ++E +IFP IG R IAE+    LL +++ +EK G LE   +++QR   + RYA+ 
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  205  SGLIDYNPAQEMAGAVASSNRQHRPALELKRIPELLQKIDDYTGRPLTRWATELTLLIFI  264
            +G  DYNPA ++A+A+A++++ H P L  + +P++L+ + +YTG  +T+ AT++ +L  +
Sbjct  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV  240

Query  265  RSSELRFARWSEIDFETSMWTIPPEREPIPGVKHSQRGSKMRTPHLVPFSKQALAILKQI  324
            R+ ELRFARW +IDFET +W IP+E              KM+ PH+VP+S Q + ++KQ+
Sbjct  241  RTQELRFARWEDIDFETKLWEIPAE------------VMKMKRPHIVPLSEQVIMLFKQL  288

Query  325  KQFCGEHELIFIGDHDPRKPMSENTVNSALRVMGYDTKVEVCGHGFRTMACSSLIESGL  383
              +  +H L+FIG +DPRKP+S +++N A+ ++GY  +  + GHGFR    + L E G+
Sbjct  289  EPISKHHPLVFIGRNDPRKPISKESINQAIELLGYKGR--LTGHGFRHTMSTILHEQGF  345

427) i02_4891 in NC_017651


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  272 bits (1017),  Expect = 2e-74, Method: Compositional matrix adjust.
 Identities = 157/359 (44%), Positives = 243/359 (68%), Gaps = 16/359 (4%)

Query  27   MALTDTKVRSAKPEEKEYSLVDGDGMSLLVKPGGSKYWRFRFRFGGKQHLMAFGVYPDVS  86
            MALTD KV++AKP +K Y L DG+GM LL++  GSKYWR ++RF+GK+ ++++GVYPDV+
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  87   LADARKKREEARKLVTAGIDPREHKRAVKEEQAKEI-ITFEKVAREW-LVTNQKWSEDHA  144
            LADAR KR EARKL++AG DP E K+  K  Q   +  TFE +AREW  +  ++WS    
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  145  NRVKKSLEDNIFPTIGARNIAELGTRDLLIPIKAVEKSGRLEVASRLQQRTTAIMRYAVQ  204
            + +  ++E +IFP IG R IAE+    LL +++ +EK G LE   +++QR   + RYA+ 
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  205  SGLIDYNPAQEMAGAVASSNRQHRPALELKRIPELLQKIDDYTGRPLTRWATELTLLIFI  264
            +G  DYNPA ++A+A+A++++ H P L  + +P++L+ + +YTG  +T+ AT++ +L  +
Sbjct  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV  240

Query  265  RSSELRFARWSEIDFETSMWTIPPEREPIPGVKHSQRGSKMRTPHLVPFSKQALAILKQI  324
            R+ ELRFARW +IDFET +W IP+E              KM+ PH+VP+S Q + ++KQ+
Sbjct  241  RTQELRFARWEDIDFETKLWEIPAE------------VMKMKRPHIVPLSEQVIMLFKQL  288

Query  325  KQFCGEHELIFIGDHDPRKPMSENTVNSALRVMGYDTKVEVCGHGFRTMACSSLIESGL  383
              +  +H L+FIG +DPRKP+S +++N A+ ++GY  +  + GHGFR    + L E G+
Sbjct  289  EPISKHHPLVFIGRNDPRKPISKESINQAIELLGYKGR--LTGHGFRHTMSTILHEQGF  345

428) Selin_1494 in NC_014836


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  272 bits (1018),  Expect = 2e-74, Method: Compositional matrix adjust.
 Identities = 163/388 (43%), Positives = 258/388 (67%), Gaps = 1/388 (0%)

Query  7    PLTVKQIDSAKPKDKQYRLYDGGGLVFTIKPNGGKYWIMRYRYEKKSHELHLGTYPEVPL  66
            +LT  ++ +AKPKDK Y+L DGGG+ + I+ NG+KYW M+YR+  K   L +G YP+V L
Sbjct  2    ALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVTL  61

Query  67   SKAREFREEVRVQVAAGIDPKRYREEAENQLLRQKEGSFESVARSWCEIQKPRWTERHGS  126
            + ARE R E R  +AAG DP   + E           +FE++AR W +++  RW+ R   
Sbjct  62   ADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYRD  121

Query  127  DVINSLETNVFPYIGSRPIYELKPRELLDVVKVIDDRGASEIARRVLQRISAIYDYAFAH  186
            ++I+++E ++FPYIG RPI E+KP  LL+ ++ ++ RGA E  R+V QR + ++ YA+  
Sbjct  122  EIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIVT  181

Query  187  GLVELNPTAGLVKGLKPQKKQNFAALSAEEVPELVRAIEGYHGHPItklalklclltaSR  246
            G  + NP+++L  +L   KK +F+ L+A+E+P+++  + GY G  ITK A ++ +LT+ R
Sbjct  182  GRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGVR  241

Query  247  TNEIRFASWQEFDLDNTLWCIPAERMKMRRDHRVPLSRQAVAVVEELIQYSGKNKYLFPN  306
            T+E+RFA W+++D++  LW IPAE MKM+R H VPLS Q + +  +L   S  +  +F  
Sbjct  242  TQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHPLVFIG  301

Query  307  QNKPHTPITENTMLYALYRMGFHKRSTVHGFRTLFSTIANEKSDFSADAVERQLAHQEQN  366
            +N P+ PI+ +++  A+  +G+  R T HGFR   STI +E++ F++  +E QLAH ++N
Sbjct  302  RNDPRKPISKESINQAIELLGYKGRLTGHGFRHTMSTILHEQG-FNSAWIEMQLAHVDKN  360

Query  367  RIRAAYHRADYLDERRELMQWWADYLDG  394
             IR +Y++A YLD RRE+MQW ADY+D+
Sbjct  361  SIRDTYNHALYLDGRREMMQWYADYIDS  388

429) Pecwa_0718 in NC_013421


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  272 bits (1018),  Expect = 2e-74, Method: Compositional matrix adjust.
 Identities = 175/407 (43%), Positives = 270/407 (67%), Gaps = 25/407 (6%)

Query  1    MPLTDTAIRNAKPLDKPYKLSDAQGLYLLIKPNGSKLWHLKYRFGGKEKKLAFGAYPTVS  60
            M+LTD  ++ AKP DKPYKL+D+ G+YLLI+ NGSK W++KYRF+GKEK L++G YP V+
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   LASARKLREEARTILSAGDDPGVKKQHDKQAKKNG--NTFEAIARQWVAANI-RWSEAHT  117
            LA AR  R EAR +L+AG+DPG  K+++K A++ +  NTFEAIAR+W   +  RWS    
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  118  DKVLRSLELHVFPLIGNVLVTDLKTANLLIPLRVAEKKGCLETAARIQQRTTVIMRYAVQ  177
            D ++ ++E ++FP IG+  ++++K  +LL +LR  EK+G LE   +++QR   + RYA+ 
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  178  EGLIASNPANDLYGAITPPPKNHYpalpleklpelleRIEGYSGRLLTRLAVQLNLLIFI  237
             G    NPA DL +A++ P K H+P L  + LP++L+ + GY+G ++T+ A Q+ +L  +
Sbjct  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV  240

Query  238  RSSELRFARWVEIDLDNAMWTLPAQREPIAGVRHSERGAKMKTPHLVPLSKQAVTVLKQL  297
            R+ ELRFARW +ID++  +W +PA+              KMK PH+VPLS Q + ++KQL
Sbjct  241  RTQELRFARWEDIDFETKLWEIPAE------------VMKMKRPHIVPLSEQVIMLFKQL  288

Query  298  KLLSGNGDLLFPGDHDALKPMSENTINKALRTMGYDTQVDICGHGFRTIACSALIESG--  355
              +S +  L+F G +D+ KP+S ++IN+A+  +GY  +  + GHGFR    + L E G  
Sbjct  289  EPISKHHPLVFIGRNDPRKPISKESINQAIELLGYKGR--LTGHGFRHTMSTILHEQGFN  346

Query  356  -RWSKDAVERQMSHQERNHVRAAYIHKAEHLDERTQMMQWWSDYLDA  401
              W    +E Q++H ++N +R +Y H A  LD R +MMQW +DY+D+
Sbjct  347  SAW----IEMQLAHVDKNSIRDTYNH-ALYLDGRREMMQWYADYIDS  388

430) intB in NC_012971


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  272 bits (1019),  Expect = 2e-74, Method: Compositional matrix adjust.
 Identities = 155/381 (41%), Positives = 251/381 (66%), Gaps = 25/381 (6%)

Query  1    MHLLVHPNGSKYWRLQYRYEGKQKMLALGVYPEITLADARVRRDETRKLLANGVDPGDKK  60
            M LL++ NGSKYWR++YR+ GK+KML++GVYP++TLADAR +R E+RKLLA G DPG+ K
Sbjct  26   MYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVTLADAREKRSEARKLLAAGGDPGEAK  85

Query  61   KNDKVEQSKA--RTFKEVAIEWHG-TNKKWSEDHAHRVLKSLEDNLFAALGERNIAELKT  117
            K++K+ Q  +   TF  +A EWH     +WS    + ++ ++E ++F+ +G R IAE+K 
Sbjct  86   KEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYRDEIIDTFEKDIFPYIGKRPIAEIKP  145

Query  118  RDLLAPIKAVEMSGRLEVAARLQQRTTAIMRYAVQSGLIDYNPAQEMAGAVASCNRQHRP  177
              LL +++ +E  G LE   +++QR   + RYA+ +G  DYNPA ++A+A+A+ ++ H P
Sbjct  146  MKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIVTGRADYNPAPDLASALATPKKVHFP  205

Query  178  ALELKRIPELLTKIDSYTGRPLTRWAIELTLLIFIRSSELRFARWSEIDFEASIWTIPPE  237
             L  + +P++L  + +YTG  +T+ A ++ +L  +R+ ELRFARW +IDFE+ +W IP+E
Sbjct  206  FLTANELPHFLNDLAGYTGSIITKTATQIIMLTGVRTQELRFARWEDIDFETKLWEIPAE  265

Query  238  REPIPGVKHSHRGSKMRTTHLVPLSTQALAILKQIKQFYGAHDLIFIGDHDSHKPMSENT  297
                          KM+  H+VPLS Q + ++KQ+  +   H L+FIG +D++KP+S ++
Sbjct  266  ------------VMKMKRPHIVPLSEQVIMLFKQLEPISKHHPLVFIGRNDPRKPISKES  313

Query  298  VNSALRVMGYDTKVEVCGHGFRTMACSSLVESGL---WSRDAVERQMSHMARNSVRAAYI  354
            +N A+ ++GY  +  + GHGFR    + L E G+   W    +E Q++H+ +NS+R +Y 
Sbjct  314  INQAIELLGYKGR--LTGHGFRHTMSTILHEQGFNSAW----IEMQLAHVDKNSIRDTYN  367

Query  355  HKAEHLEERRLMLQWWADFLD  375
            H A  L+ RR M+QW AD++D
Sbjct  368  H-ALYLDGRREMMQWYADYID  387

431) intB in NC_012892


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  272 bits (1019),  Expect = 2e-74, Method: Compositional matrix adjust.
 Identities = 155/381 (41%), Positives = 251/381 (66%), Gaps = 25/381 (6%)

Query  1    MHLLVHPNGSKYWRLQYRYEGKQKMLALGVYPEITLADARVRRDETRKLLANGVDPGDKK  60
            M LL++ NGSKYWR++YR+ GK+KML++GVYP++TLADAR +R E+RKLLA G DPG+ K
Sbjct  26   MYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVTLADAREKRSEARKLLAAGGDPGEAK  85

Query  61   KNDKVEQSKA--RTFKEVAIEWHG-TNKKWSEDHAHRVLKSLEDNLFAALGERNIAELKT  117
            K++K+ Q  +   TF  +A EWH     +WS    + ++ ++E ++F+ +G R IAE+K 
Sbjct  86   KEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYRDEIIDTFEKDIFPYIGKRPIAEIKP  145

Query  118  RDLLAPIKAVEMSGRLEVAARLQQRTTAIMRYAVQSGLIDYNPAQEMAGAVASCNRQHRP  177
              LL +++ +E  G LE   +++QR   + RYA+ +G  DYNPA ++A+A+A+ ++ H P
Sbjct  146  MKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIVTGRADYNPAPDLASALATPKKVHFP  205

Query  178  ALELKRIPELLTKIDSYTGRPLTRWAIELTLLIFIRSSELRFARWSEIDFEASIWTIPPE  237
             L  + +P++L  + +YTG  +T+ A ++ +L  +R+ ELRFARW +IDFE+ +W IP+E
Sbjct  206  FLTANELPHFLNDLAGYTGSIITKTATQIIMLTGVRTQELRFARWEDIDFETKLWEIPAE  265

Query  238  REPIPGVKHSHRGSKMRTTHLVPLSTQALAILKQIKQFYGAHDLIFIGDHDSHKPMSENT  297
                          KM+  H+VPLS Q + ++KQ+  +   H L+FIG +D++KP+S ++
Sbjct  266  ------------VMKMKRPHIVPLSEQVIMLFKQLEPISKHHPLVFIGRNDPRKPISKES  313

Query  298  VNSALRVMGYDTKVEVCGHGFRTMACSSLVESGL---WSRDAVERQMSHMARNSVRAAYI  354
            +N A+ ++GY  +  + GHGFR    + L E G+   W    +E Q++H+ +NS+R +Y 
Sbjct  314  INQAIELLGYKGR--LTGHGFRHTMSTILHEQGFNSAW----IEMQLAHVDKNSIRDTYN  367

Query  355  HKAEHLEERRLMLQWWADFLD  375
            H A  L+ RR M+QW AD++D
Sbjct  368  H-ALYLDGRREMMQWYADYID  387

432) ECBD_3766 in NC_012947


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  272 bits (1019),  Expect = 2e-74, Method: Compositional matrix adjust.
 Identities = 155/381 (41%), Positives = 251/381 (66%), Gaps = 25/381 (6%)

Query  1    MHLLVHPNGSKYWRLQYRYEGKQKMLALGVYPEITLADARVRRDETRKLLANGVDPGDKK  60
            M LL++ NGSKYWR++YR+ GK+KML++GVYP++TLADAR +R E+RKLLA G DPG+ K
Sbjct  26   MYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVTLADAREKRSEARKLLAAGGDPGEAK  85

Query  61   KNDKVEQSKA--RTFKEVAIEWHG-TNKKWSEDHAHRVLKSLEDNLFAALGERNIAELKT  117
            K++K+ Q  +   TF  +A EWH     +WS    + ++ ++E ++F+ +G R IAE+K 
Sbjct  86   KEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYRDEIIDTFEKDIFPYIGKRPIAEIKP  145

Query  118  RDLLAPIKAVEMSGRLEVAARLQQRTTAIMRYAVQSGLIDYNPAQEMAGAVASCNRQHRP  177
              LL +++ +E  G LE   +++QR   + RYA+ +G  DYNPA ++A+A+A+ ++ H P
Sbjct  146  MKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIVTGRADYNPAPDLASALATPKKVHFP  205

Query  178  ALELKRIPELLTKIDSYTGRPLTRWAIELTLLIFIRSSELRFARWSEIDFEASIWTIPPE  237
             L  + +P++L  + +YTG  +T+ A ++ +L  +R+ ELRFARW +IDFE+ +W IP+E
Sbjct  206  FLTANELPHFLNDLAGYTGSIITKTATQIIMLTGVRTQELRFARWEDIDFETKLWEIPAE  265

Query  238  REPIPGVKHSHRGSKMRTTHLVPLSTQALAILKQIKQFYGAHDLIFIGDHDSHKPMSENT  297
                          KM+  H+VPLS Q + ++KQ+  +   H L+FIG +D++KP+S ++
Sbjct  266  ------------VMKMKRPHIVPLSEQVIMLFKQLEPISKHHPLVFIGRNDPRKPISKES  313

Query  298  VNSALRVMGYDTKVEVCGHGFRTMACSSLVESGL---WSRDAVERQMSHMARNSVRAAYI  354
            +N A+ ++GY  +  + GHGFR    + L E G+   W    +E Q++H+ +NS+R +Y 
Sbjct  314  INQAIELLGYKGR--LTGHGFRHTMSTILHEQGFNSAW----IEMQLAHVDKNSIRDTYN  367

Query  355  HKAEHLEERRLMLQWWADFLD  375
            H A  L+ RR M+QW AD++D
Sbjct  368  H-ALYLDGRREMMQWYADYID  387

433) intB in NC_012967


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  272 bits (1019),  Expect = 2e-74, Method: Compositional matrix adjust.
 Identities = 155/381 (41%), Positives = 251/381 (66%), Gaps = 25/381 (6%)

Query  1    MHLLVHPNGSKYWRLQYRYEGKQKMLALGVYPEITLADARVRRDETRKLLANGVDPGDKK  60
            M LL++ NGSKYWR++YR+ GK+KML++GVYP++TLADAR +R E+RKLLA G DPG+ K
Sbjct  26   MYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVTLADAREKRSEARKLLAAGGDPGEAK  85

Query  61   KNDKVEQSKA--RTFKEVAIEWHG-TNKKWSEDHAHRVLKSLEDNLFAALGERNIAELKT  117
            K++K+ Q  +   TF  +A EWH     +WS    + ++ ++E ++F+ +G R IAE+K 
Sbjct  86   KEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYRDEIIDTFEKDIFPYIGKRPIAEIKP  145

Query  118  RDLLAPIKAVEMSGRLEVAARLQQRTTAIMRYAVQSGLIDYNPAQEMAGAVASCNRQHRP  177
              LL +++ +E  G LE   +++QR   + RYA+ +G  DYNPA ++A+A+A+ ++ H P
Sbjct  146  MKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIVTGRADYNPAPDLASALATPKKVHFP  205

Query  178  ALELKRIPELLTKIDSYTGRPLTRWAIELTLLIFIRSSELRFARWSEIDFEASIWTIPPE  237
             L  + +P++L  + +YTG  +T+ A ++ +L  +R+ ELRFARW +IDFE+ +W IP+E
Sbjct  206  FLTANELPHFLNDLAGYTGSIITKTATQIIMLTGVRTQELRFARWEDIDFETKLWEIPAE  265

Query  238  REPIPGVKHSHRGSKMRTTHLVPLSTQALAILKQIKQFYGAHDLIFIGDHDSHKPMSENT  297
                          KM+  H+VPLS Q + ++KQ+  +   H L+FIG +D++KP+S ++
Sbjct  266  ------------VMKMKRPHIVPLSEQVIMLFKQLEPISKHHPLVFIGRNDPRKPISKES  313

Query  298  VNSALRVMGYDTKVEVCGHGFRTMACSSLVESGL---WSRDAVERQMSHMARNSVRAAYI  354
            +N A+ ++GY  +  + GHGFR    + L E G+   W    +E Q++H+ +NS+R +Y 
Sbjct  314  INQAIELLGYKGR--LTGHGFRHTMSTILHEQGFNSAW----IEMQLAHVDKNSIRDTYN  367

Query  355  HKAEHLEERRLMLQWWADFLD  375
            H A  L+ RR M+QW AD++D
Sbjct  368  H-ALYLDGRREMMQWYADYID  387

434) intB in NC_011745


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  272 bits (1018),  Expect = 2e-74, Method: Compositional matrix adjust.
 Identities = 155/381 (41%), Positives = 252/381 (67%), Gaps = 25/381 (6%)

Query  1    MHLLVHPNGSKYWRLQYRYEGKQKMLALGVYPEITLADARVRRDEARNLLANGVDPGDKK  60
            M LL++ NGSKYWR++YR+ GK+KML++GVYP++TLADAR +R EAR+LLA G DPG+ K
Sbjct  26   MYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVTLADAREKRSEARKLLAAGGDPGEAK  85

Query  61   KNDKVEQSKA--RTFKEVAIEWHG-TNKKWSEDHAHRVLKSLEDNLFAALGERNIAELKT  117
            K++K+ Q  +   TF  +A EWH     +WS    + ++ ++E ++F+ +G R IAE+K 
Sbjct  86   KEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYRDEIIDTFEKDIFPYIGKRPIAEIKP  145

Query  118  RDLLAPIKAVEMSGRLEVAARLQQRTTAIMRYAVQSGLIDYNPAQEMAGAVASCNRQHRP  177
              LL +++ +E  G LE   +++QR   + RYA+ +G  DYNPA ++A+A+A+ ++ H P
Sbjct  146  MKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIVTGRADYNPAPDLASALATPKKVHFP  205

Query  178  ALELKRIPELLAKIDSYTGRPLTRWAIELTLLIFIRSSELRFARWSEIDFEASIWTIPPE  237
             L  + +P++L  + +YTG  +T+ A ++ +L  +R+ ELRFARW +IDFE+ +W IP+E
Sbjct  206  FLTANELPHFLNDLAGYTGSIITKTATQIIMLTGVRTQELRFARWEDIDFETKLWEIPAE  265

Query  238  REPIPGVKHSHRGSKMRTTHLVPLSTQALAILKQIKQFYGAHDLIFIGDHDSHKPMSENT  297
                          KM+  H+VPLS Q + ++KQ+  +   H L+FIG +D++KP+S ++
Sbjct  266  ------------VMKMKRPHIVPLSEQVIMLFKQLEPISKHHPLVFIGRNDPRKPISKES  313

Query  298  VNSALRVMGYDTKVEVCGHGFRTMACSSLVESGL---WSRDAVERQMSHMERNSVRAAYI  354
            +N A+ ++GY  +  + GHGFR    + L E G+   W    +E Q++H+++NS+R +Y 
Sbjct  314  INQAIELLGYKGR--LTGHGFRHTMSTILHEQGFNSAW----IEMQLAHVDKNSIRDTYN  367

Query  355  HKAEHLEERRLMLQWWADFLD  375
            H A  L+ RR M+QW AD++D
Sbjct  368  H-ALYLDGRREMMQWYADYID  387

435) intB in NC_017663


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  272 bits (1019),  Expect = 2e-74, Method: Compositional matrix adjust.
 Identities = 155/381 (41%), Positives = 251/381 (66%), Gaps = 25/381 (6%)

Query  1    MHLLVHPNGSKYWRLQYRYEGKQKMLALGVYPEITLADARVRRDETRKLLANGVDPGDKK  60
            M LL++ NGSKYWR++YR+ GK+KML++GVYP++TLADAR +R E+RKLLA G DPG+ K
Sbjct  26   MYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVTLADAREKRSEARKLLAAGGDPGEAK  85

Query  61   KNDKVEQSKA--RTFKEVAIEWHG-TNKKWSEDHAHRVLKSLEDNLFAALGERNIAELKT  117
            K++K+ Q  +   TF  +A EWH     +WS    + ++ ++E ++F+ +G R IAE+K 
Sbjct  86   KEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYRDEIIDTFEKDIFPYIGKRPIAEIKP  145

Query  118  RDLLAPIKAVEMSGRLEVAARLQQRTTAIMRYAVQSGLIDYNPAQEMAGAVASCNRQHRP  177
              LL +++ +E  G LE   +++QR   + RYA+ +G  DYNPA ++A+A+A+ ++ H P
Sbjct  146  MKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIVTGRADYNPAPDLASALATPKKVHFP  205

Query  178  ALELKRIPELLTKIDSYTGRPLTRWAIELTLLIFIRSSELRFARWSEIDFEASIWTIPPE  237
             L  + +P++L  + +YTG  +T+ A ++ +L  +R+ ELRFARW +IDFE+ +W IP+E
Sbjct  206  FLTANELPHFLNDLAGYTGSIITKTATQIIMLTGVRTQELRFARWEDIDFETKLWEIPAE  265

Query  238  REPIPGVKHSHRGSKMRTTHLVPLSTQALAILKQIKQFYGAHDLIFIGDHDSHKPMSENT  297
                          KM+  H+VPLS Q + ++KQ+  +   H L+FIG +D++KP+S ++
Sbjct  266  ------------VMKMKRPHIVPLSEQVIMLFKQLEPISKHHPLVFIGRNDPRKPISKES  313

Query  298  VNSALRVMGYDTKVEVCGHGFRTMACSSLVESGL---WSRDAVERQMSHMARNSVRAAYI  354
            +N A+ ++GY  +  + GHGFR    + L E G+   W    +E Q++H+ +NS+R +Y 
Sbjct  314  INQAIELLGYKGR--LTGHGFRHTMSTILHEQGFNSAW----IEMQLAHVDKNSIRDTYN  367

Query  355  HKAEHLEERRLMLQWWADFLD  375
            H A  L+ RR M+QW AD++D
Sbjct  368  H-ALYLDGRREMMQWYADYID  387

436) GM18_2022 in NC_014973


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  271 bits (1015),  Expect = 3e-74, Method: Compositional matrix adjust.
 Identities = 172/393 (44%), Positives = 262/393 (67%), Gaps = 4/393 (1%)

Query  7    PLSDLQVSRAKAQERQTTLFDGGGLFVLISPTGGKLWRFKYRFNGKSKLLSLGSYPYVSL  66
            +L+D++V  AK++++   L DGGG+++LI+  G+K WR KYRF GK K+LS+G YP V+L
Sbjct  2    ALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVTL  61

Query  67   ADARAKREVYRKLLAHGIDPGEAKKAEQADKIAAAGSTFEAVARDWHRRFKSQWSAGHAE  126
            ADAR KR   RKLLA G DPGEAKK E+  +  +  +TFEA+AR+WH+    +WS    +
Sbjct  62   ADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYRD  121

Query  127  QIMKRLEQDVFPWLGTRPIGEIKAPELLTVLRRIEVR-SLETAFRVKTACGQVFRYAVAE  185
            +I+  +E+D+FP +G RPI+EIK+  LL  LR++E R +LE   +V+  CG+VFRYA+  
Sbjct  122  EIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIVT  181

Query  186  GRAERDPVADLRGALPPVKYKNFAAPTNPKEVAPLLRAIDGFQGSFVVKCAMQLAPLLFV  245
            GRA+ +P +DL +AL+  K  +F+  T ++E++ +L  + G+ GS++ K A Q+  L  V
Sbjct  182  GRADYNPAPDLASALATPKKVHFPFLT-ANELPHFLNDLAGYTGSIITKTATQIIMLTGV  240

Query  246  RPGELRHAEWAEIDLEAAEWNIPAAKMKMGVPHLVPLPRQAVEILETLHPLTGHGKYVFP  305
            R  ELR A W +ID+E+  W+IPA  MKM  PH+VPL+ Q + ++  L+P++ H   VF 
Sbjct  241  RTQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHPLVFI  300

Query  306  CSRSLQRCMSENSVNAGLRRLGFEKSEITGHGFRAMARTILDEVLQVRPELIEHQLAHQV  365
                 ++ +S +S+N ++  LG+ K+ +TGHGFR    TIL+E     +  IE QLAH  
Sbjct  301  GRNDPRKPISKESINQAIELLGY-KGRLTGHGFRHTMSTILHEQ-GFNSAWIEMQLAHVD  358

Query  366  RDPLGRAYNRTTHLPERRKMMQTWADYLDGLKS  398
            ++++  +YN++  L  RR MMQ  ADY+D+L S
Sbjct  359  KNSIRDTYNHALYLDGRREMMQWYADYIDSLSS  391

437) intB in NC_020409


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  271 bits (1014),  Expect = 4e-74, Method: Compositional matrix adjust.
 Identities = 168/396 (43%), Positives = 265/396 (67%), Gaps = 8/396 (2%)

Query  1    MPLTDAKIKAAKPKSKEFTLNDGEGLSLVVNPKGRKWWRFRYQINGKRTMLSLGPYPYIS  60
            M+LTD K+K+AKPK K + L DG G+ L++N +G K WR +Y++ GK  MLS+G YP ++
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   LQEARLKRGDLKTLIAQGHDPSRKRKEDK--RKASASEAFEAIAREWFGKQVGSG-WSER  117
            L +AR KR++ + L+A G DP+  +KE+K  ++ S  ++FEAIAREW   Q+ ++ WS R
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREW--HQLKADRWSLR  118

Query  118  HAKTTMERMKKNIFPFIGDRPISELGVEDMLGVVQRCEKRGAVETARRIRQIMSQVFRYA  177
                 ++   K+IFP+IG RPI+E+    +L  +++ EKRGA+E  R++RQ  ++VFRYA
Sbjct  119  YRDEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYA  178

Query  178  VAAGRAERDPAADIKGALPPARKVKHHPSITDPKEIGPLLRAVDGFSGTLVVHCALRFAP  237
            + +GRA+ +PA+D+ +AL+ ++KV H P +T ++E+  +L  + G++G+++   A ++  
Sbjct  179  IVTGRADYNPAPDLASALATPKKV-HFPFLT-ANELPHFLNDLAGYTGSIITKTATQIIM  236

Query  238  LVFVRPGELRNAEWGEVDLEGSEWRIPAEKMKGGSPHIVPLSTQAVEVLTELHPLTGPSG  297
            L  VR  ELR A W ++D+E   W IPAE MK   PHIVPLS Q + ++ +L+P++    
Sbjct  237  LTGVRTQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHP  296

Query  298  YVFPSVRTSARPMSENTINVSLRRIGYDKTEMTGHGFRSMASTLLNEHGWHKDAIERQLA  357
             VF +   + +P+S ++IN ++  +GY K  +TGHGFR   ST+L+E+G +   IE QLA
Sbjct  297  LVFIGRNDPRKPISKESINQAIELLGY-KGRLTGHGFRHTMSTILHEQGFNSAWIEMQLA  355

Query  358  HTPKDKVRASYNYAEHLPERKLMMQAWADYLDSLKA  393
            H  K+ +R +YN A  L  R+ MMQ  ADY+DSL +
Sbjct  356  HVDKNSIRDTYNHALYLDGRREMMQWYADYIDSLSS  391

438) Galf_1827 in NC_014394


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  271 bits (1012),  Expect = 5e-74, Method: Compositional matrix adjust.
 Identities = 175/404 (44%), Positives = 273/404 (68%), Gaps = 16/404 (3%)

Query  1    MALTELAVKNAKPKDKPYKLSDGGGLFLLVQINGGKYWRLAYRFADKQKTLALGIYPDIS  60
            MALT++ VK AKPKDKPYKL+DGGG++LL++ NG+KYWR+ YRFA+K+K L++G+YPD++
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   LADARERREQARKLLANDTDPSAIKKETKRILQTATVNSFSALAKELHKVKAPMWTEGHA  120
            LADARE+R +ARKLLA + DP+  KKE K   Q +  N+F A+A+E H++KA  W+    
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  121  KQWMLNMEKYAFPVIGDRPVAEIEPLELVGIMRNVEAQGTFETRDRLLQTISSTFKYAIA  180
             + +   EK  FP IG RP+AEI P+ L+  +R++E +G++E   ++ Q  +  F+YAI 
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  181  IGKAKYNPA-EIRLALADRPKVENFACLSTDEIPAFLRAFDDYQERGKVSLIavaafrll  239
             G+A YNPA ++  ALA   KV +F+ L+++E+P FL  + +Y      S+I+ +A +++
Sbjct  181  TGRADYNPAPDLASALATPKKV-HFPFLTANELPHFLNDLAGYTG----SIITKTATQII  235

Query  240  lltatrSSEVRFSKWADFDLDAGCWIIPAEQTgrkgkhgkrkPHAVPLSDQAIAVLRDLY  299
            +LT+ R+ E+RF++W D+D+++  W IPAE          ++PH VPLS+Q I ++++L 
Sbjct  236  MLTGVRTQELRFARWEDIDFETKLWEIPAE------VMKMKRPHIVPLSEQVIMLFKQLE  289

Query  300  PVTGHGEHVFPSRNGMGRVISENTVNKIIETMGYKGRQTGHGFRSLARTTLGDMG--HRW  357
            P++ H   VF +RN+  + IS +++N+ IE +GYKGR TGHGFR    T L + G    W
Sbjct  290  PISKHHPLVFIGRNDPRKPISKESINQAIELLGYKGRLTGHGFRHTMSTILHEQGFNSAW  349

Query  358  EVLEAMLSHALENQTAAAYVRTTYFEERRGIMQKWADYLDAVKS  401
              +E  L+H   N    +Y ++ Y++ RR +MQ  ADY+D++ S
Sbjct  350  --IEMQLAHVDKNSIRDTYNHALYLDGRREMMQWYADYIDSLSS  391

439) GM18_2884 in NC_014973


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  271 bits (1012),  Expect = 6e-74, Method: Compositional matrix adjust.
 Identities = 169/394 (43%), Positives = 272/394 (70%), Gaps = 3/394 (0%)

Query  6    VPLSEQQVRKAKPQAKETKMFDGMGLFLLVTPSGGKLWRFKYQFGGKEKLLAFGSYPEIS  65
            ++L++ +V+ AKP+ K  K+ DG G++LL+  +G+K WR KY+F+GKEK+L++G YP+++
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  66   laeareklaaarkQVAAGIDPSGTKKALKAAQVAASESAFEIVAREWHTRFLNTWTAGHA  125
            LA+AREK + ARK +AAG DP+ +KK  K AQ  +  ++FE +AREWH    + W+    
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  126  GTILKRLERDVFPWVGNRPIGEIEPPEILAVLRRVESRGALETAHRIKTICGQVFRYAVA  185
            + I+  +E+D+FP +G+RPI+EI P  +L  LR++E RGALE  ++++  CG+VFRYA+ 
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  186  TGRATRDVAADLKGALPPAPEKHHASITDPKEVAQLLRAIQGYEGRFIVRCALRLSPLFF  245
            TGRA  + A+DL +AL ++P K H ++  ++E++++L  + GY G +I + A ++  L  
Sbjct  181  TGRADYNPAPDLASAL-ATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTG  239

Query  246  VRPGELRHAEWSEVDFEEALWTIPAERMKMKASHIVPLSSQALEILKELHSFTGRGRYLF  305
            VR  ELR A W ++DFE  LW IPAE MKMK +HIVPLS Q + ++K+L++++ +   +F
Sbjct  240  VRTQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHPLVF  299

Query  306  PCARSAARPMSNNAVNAALRRMGFDKDTMTGHGFRATARTILDELLNIRPDYIEHQLAHA  365
                 + +P+S++++N A+  +G+ K+ +TGHGFR T  TIL+E   + +  IE QLAH 
Sbjct  300  IGRNDPRKPISKESINQAIELLGY-KGRLTGHGFRHTMSTILHE-QGFNSAWIEMQLAHV  357

Query  366  VKDPNGRAYNRTAHLAERRKMMQTWADYLDGLVA  399
             K++   +YN++  L  RR MMQ  ADY+D+L +
Sbjct  358  DKNSIRDTYNHALYLDGRREMMQWYADYIDSLSS  391

440) intB in NC_007613


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  271 bits (1012),  Expect = 6e-74, Method: Compositional matrix adjust.
 Identities = 160/382 (42%), Positives = 253/382 (67%), Gaps = 24/382 (6%)

Query  1    MSLLVKPGGSKYWRFRFRFGGKQHLMAFGVYPDVSLADARKKREEARKLVAAGIDPREHK  60
            M LL++  GSKYWR ++RF+GK+ ++++GVYPDV+LADAR KR EARKL+AAG DP E K
Sbjct  26   MYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVTLADAREKRSEARKLLAAGGDPGEAK  85

Query  61   RAVKEEQAKEI-ITFEKVAREW-LVTNQKWSEEHANRVKKSLEDNIFPAIGSHNIAELGT  118
            +  K  Q   +  TFE +AREW  +  ++WS    + +  ++E +IFP IG + IAE+  
Sbjct  86   KEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYRDEIIDTFEKDIFPYIGKRPIAEIKP  145

Query  119  RDLLIPIKAVEKSGRLEVASRLQQRTTAIMRYAVQSGLIDYNPAQEMAGAVASSNRQHRP  178
              LL +++ +EK G LE   +++QR   + RYA+ +G  DYNPA ++A+A+A++++ H P
Sbjct  146  MKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIVTGRADYNPAPDLASALATPKKVHFP  205

Query  179  ALELKRIPELLQKIDEYTGRPLTRWATELTLLIFIRSSELRFARWSEIDFETSMWTIPPE  238
             L  + +P++L+ +  YTG  +T+ AT++ +L  +R+ ELRFARW +IDFET +W IP+E
Sbjct  206  FLTANELPHFLNDLAGYTGSIITKTATQIIMLTGVRTQELRFARWEDIDFETKLWEIPAE  265

Query  239  REPIPGVKHSQRGAKMRTPHLVPLSKQALAILKQIKQFCGEHELIFIGDHDPSKPMSENT  298
                          KM+ PH+VPLS Q + ++KQ+  +  +H L+FIG +DP KP+S ++
Sbjct  266  ------------VMKMKRPHIVPLSEQVIMLFKQLEPISKHHPLVFIGRNDPRKPISKES  313

Query  299  VNSALRVMGYDTKVEVCGHGFRTMACSSLIESGL---WSKDAVERQMSHMERNSVRAAYI  355
            +N A+ ++GY  +  + GHGFR    + L E G+   W    +E Q++H+++NS+R +Y 
Sbjct  314  INQAIELLGYKGR--LTGHGFRHTMSTILHEQGFNSAW----IEMQLAHVDKNSIRDTYN  367

Query  356  HKAEHLDERKLMLQWWADFLDA  377
            H A  LD R+ M+QW AD++D+
Sbjct  368  H-ALYLDGRREMMQWYADYIDS  388

441) Bamb_2421 in NC_008390


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  270 bits (1008),  Expect = 1e-73, Method: Compositional matrix adjust.
 Identities = 174/395 (45%), Positives = 269/395 (69%), Gaps = 6/395 (1%)

Query  1    MPLTDIQVRNAKASAAPYKLTDGNGMFLLVQPNGAKYWRLSYRFLGKQKTLALGVYPAVT  60
            M+LTDI+V+ AK+   PYKL+DG GM+LL++ NG+KYWR+ YRF GK+K L++GVYP VT
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   LATARKKRDEAREQIAAGIDPGEakkdakraaeiaaansfeavaREWFDSQRPGWSDGYA  120
            LA AR KR EAR  +AAG DPGEAKK+ K A +++  N+FEA+AREW + +   WS  Y 
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  121  EKVLNSLEVDVFPKIGARPMAEIDSPQMLSIVREVEARGVRETAKRILQRSRAVFQYGIM  180
            + +++++E D+FP IG RP+AEI + ++L  +R +E RG  E  +++ QR   VF+Y+I+
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  181  TGRCSRNPAADIDAQTVLKKGPGVQHMARVKATEIPQLMRDIDAYQGDLVTRLALRLMAL  240
            TGR   NPA+D+ +       P   H + + A E+P+++ D+ +Y G ++T+ A +++ L
Sbjct  181  TGRADYNPAPDLASALA---TPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIML  237

Query  241  TFVRTTEMIRAEWSEFDEAAAEWRVPPERMKMRDPHIVPLSRQALDVLAQLRALNGQHRF  300
            T VRT E+  A W ++D  +  W +P+E MKM+ PHIVPLS Q + ++ QL +++ +H +
Sbjct  238  TGVRTQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHPL  297

Query  301  VFYS-VQGRSHISNNTMLYTLYHMGYKSRMTGHGFRGPTATALRELGFGRDVVERQMAHA  359
            VF +  + R  IS++++  ++  +GYK+R+TGHGFR   +T L+E GF    +E Q+AH 
Sbjct  298  VFIGRNDPRKPISKESINQAIELLGYKGRLTGHGFRHTMSTILHEQGFNSAWIEMQLAHV  357

Query  360  ERNQVTAAYVHAEYLPERRRMMQVW-GDHLDRLKA  393
            ++N +  +Y HA YL  RR MMQ W +D +D L +
Sbjct  358  DKNSIRDTYNHALYLDGRREMMQ-WYADYIDSLSS  391

442) Bcen_1752 in NC_008060


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  270 bits (1008),  Expect = 1e-73, Method: Compositional matrix adjust.
 Identities = 175/395 (45%), Positives = 269/395 (69%), Gaps = 6/395 (1%)

Query  1    MPLTDIQVRNAKASAAPYKLTDGNGMFLLVQPNGAKYWRLSYRFRGKQKTLALGVYPAVT  60
            M+LTDI+V+ AK+   PYKL+DG GM+LL++ NG+KYWR+ YRF GK+K L++GVYP VT
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   LATARKKRDEAREQIAAGIDPGEakkdarraaeiaaansfeavaREWFDSQRPGWSDGYA  120
            LA AR KR EAR  +AAG DPGEAKK+ + A +++  N+FEA+AREW + +   WS  Y 
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  121  EKVLNSLEVDVFPKIGARPIAEIDSPQMLSIVREVEARGVRETAKRILQRSRAVFQYGIM  180
            + +++++E D+FP IG RPIAEI + ++L  +R +E RG  E  +++ QR   VF+Y+I+
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  181  TGRCSRNPAADIDAQTVLKKGPGVQHMARVKATEIPQLMRDIDAYQGDLVTRLALRLMAL  240
            TGR   NPA+D+ +       P   H + + A E+P+++ D+ +Y G ++T+ A +++ L
Sbjct  181  TGRADYNPAPDLASALA---TPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIML  237

Query  241  TFVRTTEMIRAEWSEFDEAAAEWRVPPERMKMRDPHIVPLSRQALDVLAQLRALNGQHRF  300
            T VRT E+  A W ++D  +  W +P+E MKM+ PHIVPLS Q + ++ QL +++ +H +
Sbjct  238  TGVRTQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHPL  297

Query  301  VFYS-VQGRSHISNNTMLYALYRMGYKSRMTGHGFRGLAATALRELGFGRDVVERQMAHA  359
            VF +  + R  IS++++  A+  +GYK+R+TGHGFR   +T L+E GF    +E Q+AH 
Sbjct  298  VFIGRNDPRKPISKESINQAIELLGYKGRLTGHGFRHTMSTILHEQGFNSAWIEMQLAHV  357

Query  360  ERNQVTAAYVHAEYLPERRRMMQAW-GDHLDQLKA  393
            ++N +  +Y HA YL  RR MMQ W +D +D L +
Sbjct  358  DKNSIRDTYNHALYLDGRREMMQ-WYADYIDSLSS  391

443) Bcen2424_2364 in NC_008542


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  270 bits (1008),  Expect = 1e-73, Method: Compositional matrix adjust.
 Identities = 175/395 (45%), Positives = 269/395 (69%), Gaps = 6/395 (1%)

Query  1    MPLTDIQVRNAKASAAPYKLTDGNGMFLLVQPNGAKYWRLSYRFRGKQKTLALGVYPAVT  60
            M+LTDI+V+ AK+   PYKL+DG GM+LL++ NG+KYWR+ YRF GK+K L++GVYP VT
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   LATARKKRDEAREQIAAGIDPGEakkdarraaeiaaansfeavaREWFDSQRPGWSDGYA  120
            LA AR KR EAR  +AAG DPGEAKK+ + A +++  N+FEA+AREW + +   WS  Y 
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  121  EKVLNSLEVDVFPKIGARPIAEIDSPQMLSIVREVEARGVRETAKRILQRSRAVFQYGIM  180
            + +++++E D+FP IG RPIAEI + ++L  +R +E RG  E  +++ QR   VF+Y+I+
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  181  TGRCSRNPAADIDAQTVLKKGPGVQHMARVKATEIPQLMRDIDAYQGDLVTRLALRLMAL  240
            TGR   NPA+D+ +       P   H + + A E+P+++ D+ +Y G ++T+ A +++ L
Sbjct  181  TGRADYNPAPDLASALA---TPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIML  237

Query  241  TFVRTTEMIRAEWSEFDEAAAEWRVPPERMKMRDPHIVPLSRQALDVLAQLRALNGQHRF  300
            T VRT E+  A W ++D  +  W +P+E MKM+ PHIVPLS Q + ++ QL +++ +H +
Sbjct  238  TGVRTQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHPL  297

Query  301  VFYS-VQGRSHISNNTMLYALYRMGYKSRMTGHGFRGLAATALRELGFGRDVVERQMAHA  359
            VF +  + R  IS++++  A+  +GYK+R+TGHGFR   +T L+E GF    +E Q+AH 
Sbjct  298  VFIGRNDPRKPISKESINQAIELLGYKGRLTGHGFRHTMSTILHEQGFNSAWIEMQLAHV  357

Query  360  ERNQVTAAYVHAEYLPERRRMMQAW-GDHLDQLKA  393
            ++N +  +Y HA YL  RR MMQ W +D +D L +
Sbjct  358  DKNSIRDTYNHALYLDGRREMMQ-WYADYIDSLSS  391

444) Dd1591_3702 in NC_012912


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  270 bits (1011),  Expect = 8e-74, Method: Compositional matrix adjust.
 Identities = 170/408 (42%), Positives = 262/408 (65%), Gaps = 24/408 (5%)

Query  1    MALTDVVARTAKPREKAYKLADAHGLYLLVSPNGSKRWYLKYRFEGKESRIAFGAYPLIS  60
            MALTD+  +TAKP++K+YKLAD+ G+YLL++ NGSK W +KYRF GKE  +++G YP ++
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   LAKAREKRDEVRLLLSEGIHPTEKREEEK-EQAQDAQNTFEKVARDWHRNISQNRWSQTH  119
            LA AREKR E R LL+ G +P E + EEK  Q    +NTFE +AR+WH ++  +RWS   
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWH-QLKADRWSLRY  119

Query  120  AGRVWRDIERNILPAIGQRHIADLKTKDLLEPLKAVEQNGHLDLASRLRQRVTDIMRYAV  179
             + +   +E++I+P IG+R IA++K   LLE+L+ +E+ G L+   ++RQR  ++ RYA+
Sbjct  120  RDEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAI  179

Query  180  QNDLIERNPAQDLTGAIAAPKATHRPALKLDKLPDFLAQIERYkgraltrlalkltlCVF  239
              +  + NPA DL++A+A+PK  H P L  + LP+FL ++  Y G  +T+ A ++ +   
Sbjct  180  VTGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTG  239

Query  240  IRSSELRFARWPEIDFKRAMWTIPPEREAIPGVKHSQRGAKMRSEHLVPLSRQALALLEE  299
            +R+ ELRFARW +IDF   +W IP+E              KM+  H+VPLS Q + L+ +
Sbjct  240  VRTQELRFARWEDIDFETKLWEIPAE------------VMKMKRPHIVPLSEQVIMLFKQ  287

Query  300  IKAISGVHELIFPGDHRPTKPMSENTINSALRTMGYDTTTEVCGHGFRTMACSALVESG-  358
            + +IS  H L+F G + P KP+S ++IN A+  +GY     + GHGFR    + L E G 
Sbjct  288  LEPISKHHPLVFIGRNDPRKPISKESINQAIELLGYKGR--LTGHGFRHTMSTILHEQGF  345

Query  359  --QWSRDAVERQMSHQERNGVRAAYIHKAEHLEERKLMLQWWADYLDA  404
               W    +E Q++H ++N++R +Y H A  L+ R+ M+QW ADY+D+
Sbjct  346  NSAW----IEMQLAHVDKNSIRDTYNH-ALYLDGRREMMQWYADYIDS  388

445) EcolC_1237 in NC_010468


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  269 bits (1004),  Expect = 2e-73, Method: Compositional matrix adjust.
 Identities = 165/391 (43%), Positives = 267/391 (69%), Gaps = 7/391 (1%)

Query  5    PLTAKAIDAAQPQDKPYKLTDSQTPGLFLLVHPNGSKYWRFRYWIDKKERLQAVGVYPLI  64
            +LT   + +A+P+DKPYKL+D+   G++LL++ NGSKYWR +Y++  KE++ ++GVYP +
Sbjct  2    ALTDIKVKTAKPKDKPYKLADG--GGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDV  59

Query  65   SLKEARKRATESRLLIAQGIDPMEEARKEKAIDALNMAASFKTVAEDWLATRVSGWSESY  124
            +L +AR + +E+R L+A G DP E  + EK  + +++  +F ++A +W   +   WS  Y
Sbjct  60   TLADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRY  119

Query  125  TKQVRSALEKDVYPVLGKRSIVDITARDVLSLLQKKE-RTAPEQARKLRQRIGEIFKFAV  183
              ++  ++EKD++P +GKR+I +I +  +L  L+K E R A E+ RK+RQR GE+F++A+
Sbjct  120  RDEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAI  179

Query  184  ITELVNRNPVADLDTALKARRPGHNAWIPISEIPAFYKALER-AGSVQIQTAIRLLILTA  242
            +T   + NP +DL +AL + +  H + +  +E+P F + L   +GS+  +TA ++++LT+
Sbjct  180  VTGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTG  239

Query  243  LRTAELRLMRWEWVDLESATITLPAEVMKARRPHVVPLSRQAVELLQDQFTRSGYSAFVF  302
            +RT ELR+ RWE +D+E+    +PAEVMK +RPH+VPLS Q + L+++    S   ++VF
Sbjct  240  VRTQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHPLVF  299

Query  303  PGRFMD-KPLSASAILKALERIGYKSIATGHGWRTTFSTSLNESGRYNPDWIEIQLAHVP  361
             GR    KP+S  +I +A+E +GYK+  TGHG R T ST L+E G +N+ WIE+QLAHV 
Sbjct  300  IGRNDPRKPISKESINQAIELLGYKGRLTGHGFRHTMSTILHEQG-FNSAWIEMQLAHVD  358

Query  362  K-GVRGVYNQAAYLKQRRAMMQNYSDAIDQI  391
            K ++R+ YN+A YL  RR MMQ Y+D ID +
Sbjct  359  KNSIRDTYNHALYLDGRREMMQWYADYIDSL  389

446) Glov_1135 in NC_010814


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  269 bits (1005),  Expect = 2e-73, Method: Compositional matrix adjust.
 Identities = 169/404 (42%), Positives = 269/404 (67%), Gaps = 13/404 (3%)

Query  6    VPLSDIQVSKAKPKDKDYNLFDGGGLYLLVTSTGGKLWRMKYRFEGKERRIAFGSYPEIS  65
            ++L+DI+V  AKPKDK Y+L DGGG+YLL+ + G+K WRMKYRF GKE+ +++G YP+++
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  66   LADarrrkeearkLVANGTDPGNLKKAQKQAGEDRTANSFEVIAREWFGAFQNQWTPGHA  125
            LADAR ++ EARKL+A G DPG+ KK +K A +    N+FE IAREW     ++W+    
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  126  TKLFSRLERELFPYIGAMPIEEIKAPDVLKVLKRIESRGILETAHRVKTIISQVLRYAIA  185
              ++  +E+++FPYIG  PI EIK+  +L  L+++E RG LE  ++V+   ++V+RYAI 
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  186  HGHRADRDCTADLRGALPPARAKHFGALTDPKEVAPLLRAIDSFQGSFVVKCALQLSPML  245
             G RAD + ++DL +AL+ ++  HF  LT ++E++ +L  + ++ GS++ K A Q+  + 
Sbjct  181  TG-RADYNPAPDLASALATPKKVHFPFLT-ANELPHFLNDLAGYTGSIITKTATQIIMLT  238

Query  246  FCRPGELRGMEWAELNLDSAEWNIPVERMKLKNQTKQDRKGQFHLVPLSSQAVQILRELH  305
              R  ELR   W ++++++  W+IP E MK+K           H+VPLS Q + ++++L+
Sbjct  239  GVRTQELRFARWEDIDFETKLWEIPAEVMKMKRP---------HIVPLSEQVIMLFKQLE  289

Query  306  PLTGHSKYVFPCHRTPLRPMSENAITAALRRLGYTGSEMTGHGFRATARTILDEVLGFRP  365
            P++ H   VF  +  P +P+S ++I  A+  LGY G  +TGHGFR T  TIL+E  GF +
Sbjct  290  PISKHHPLVFIGRNDPRKPISKESINQAIELLGYKGR-LTGHGFRHTMSTILHEQ-GFNS  347

Query  366  DIIEHQLAHAVRDANGRAYNRTSFLKDRRQMMQQWADYLDGLKA  409
              IE QLAH  +++   +YN++ +L +RR+MMQ  ADY+D+L +
Sbjct  348  AWIEMQLAHVDKNSIRDTYNHALYLDGRREMMQWYADYIDSLSS  391

447) SPAB_03412 in NC_010102


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  268 bits (1001),  Expect = 4e-73, Method: Compositional matrix adjust.
 Identities = 158/388 (41%), Positives = 255/388 (66%), Gaps = 2/388 (0%)

Query  7    PLTNNEILKAKPREKDFTLHDGDGLFLLVKTSGKKLWRFRYQRPVSGSRTNLSLGSYPAL  66
            +LT+  +  AKP++K + L DG+G++LL++T+G K WR +Y+   +G    LS+G YP +
Sbjct  2    ALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYR--FAGKEKMLSIGVYPDV  59

Query  67   TLAAVRQIRDQHLTTIAQGIDPqqqqeqASEKRQIELDSIFSTVAANWFKMKSKSVTEDY  126
            TLA  R+ R +    +A G DP + + +    +Q+ L + F ++A +W ++K+   +  Y
Sbjct  60   TLADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRY  119

Query  127  AKDIWRSLEKDVFPAIGAIPVQELKARTIVEALEPIKARGALETVRRLIQRVNEIMIYAV  186
              +I  ++EKD+FP IG  P+ E+K+  ++EAL  +  RGALE +R++ QR  E+  YA+
Sbjct  120  RDEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAI  179

Query  187  NTGLIDANPASGVGMAFERPKKQNMPTLRPEELPNLMRSLVMSNLSIPTRCLIEWQLLTL  246
             TG  D NPA++++ A+  PKK + P L ++ELP+++  L     SI T+   +  +LT 
Sbjct  180  VTGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTG  239

Query  247  VRPSEASGTRWAEIDLEAKLWTIPAERMKAKREHIVPLSSQALDILEVMKPISAHREHIF  306
            VR  E   +RW +ID+E+KLW IPAE MK KR HIVPLS Q + ++  + PIS H+  +F
Sbjct  240  VRTQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHPLVF  299

Query  307  PSRNDPKQPMNSQTANAALKRIGYAGKLVAHGMRSIASTAMNETGFNSDVIESALAHIEK  366
             +RNDP++P++ ++ N A+  +GY G+L +HG R   ST ++E GFNS  IE  LAH++K
Sbjct  300  IGRNDPRKPISKESINQAIELLGYKGRLTGHGFRHTMSTILHEQGFNSAWIEMQLAHVDK  359

Query  367  NEVRRAYNRALYLEQRKELMQWWGNFIN  394
            N +R +YN+ALYL+ R+E+MQW +++I+
Sbjct  360  NSIRDTYNHALYLDGRREMMQWYADYID  387

448) Dd703_3541 in NC_012880


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  267 bits (1000),  Expect = 5e-73, Method: Compositional matrix adjust.
 Identities = 171/408 (42%), Positives = 259/408 (64%), Gaps = 24/408 (5%)

Query  1    MALTDVVARTAKPREKAYKLADAHGLYLLVSPNGSKRWYLKYRFEGKESRIAFGAYPLIS  60
            MALTD+  +TAKP++K+YKLAD+ G+YLL++ NGSK W +KYRF GKE  +++G YP ++
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   LAKAREKRDEVRLLLSEGIHPTEKREEEKEQAQDAL-NTFEKVARDWHRNISQNRWSQTH  119
            LA AREKR E R LL+ G +P E + EEK   Q +L NTFE +AR+WH ++  +RWS   
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWH-QLKADRWSLRY  119

Query  120  AGRVWRDMERNILPAIGQRHIADLKTKDLLEPLKAVEQNGHLDLASRLRQRVTDIMRYAV  179
             + +    E++I+P IG+R IA++K   LLE+L+ +E+ G L+   ++RQR  ++ RYA+
Sbjct  120  RDEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAI  179

Query  180  QNDLIERNPAQDLTGAIAAPKATHRPALKLDKLPDFLARIECYkgraltrlalkltlCVF  239
              +  + NPA DL++A+A+PK  H P L  + LP+FL  +  Y G  +T+ A ++ +   
Sbjct  180  VTGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTG  239

Query  240  IRSSELRFARWPEIDFKRAMWTIPPEREAIPGVKHSQRGAKMRSEHLVPLSRQALALLEE  299
            +R+ ELRFARW +IDF   +W IP+E              KM+  H+VPLS Q + L+ +
Sbjct  240  VRTQELRFARWEDIDFETKLWEIPAE------------VMKMKRPHIVPLSEQVIMLFKQ  287

Query  300  IKAISGAHELVFPGDHRPIKPMSENTINSALRTMGYDTTTEVCGHGFRTMACSALVESG-  358
            + +IS  H LVF G + P KP+S ++IN A+  +GY     + GHGFR    + L E G 
Sbjct  288  LEPISKHHPLVFIGRNDPRKPISKESINQAIELLGYKGR--LTGHGFRHTMSTILHEQGF  345

Query  359  --QWSRDAVARQMSHQEHNGVRAAYIHKAEHLEERKLMLQWWADYLDA  404
               W    +  Q++H + N++R +Y H A  L+ R+ M+QW ADY+D+
Sbjct  346  NSAW----IEMQLAHVDKNSIRDTYNH-ALYLDGRREMMQWYADYIDS  388

449) BTI_1100 in NC_021173


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  266 bits (996),  Expect = 1e-72, Method: Compositional matrix adjust.
 Identities = 174/399 (44%), Positives = 268/399 (68%), Gaps = 10/399 (2%)

Query  1    MPLTDTAIKNAKPADKPMRLFDGGGLYLEIAPSGGKWWRLKYRFGGKEKRISLGVYPDVP  60
            M+LTD  +K AKP DKP +L DGGG+YL I  +G+K WR+KYRF+GKEK +S+GVYPDV 
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   LKEARERHDKARALLDGGADPGeakkaekraarLSTENSFEAVAREWHAKYAPSWSASHG  120
            L +ARE++  AR LL +G+DPGEAKK EK A ++S  N+FEA+AREWH   A  WS    
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  121  ARLLRRLEVDAFPWIGGKPIAELAPPDVLDVLRRVEKRGALETAHRLHANVGQVCRYAVA  180
              ++  +E D FP IG +PIAE+ P  +L+ LR++EKRGALE  ++++   G+V RYA+ 
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  181  TGRAARDVTADLRGALPPVQQEHMAAITDPKQVAELLRAIDGYQGTLPVSCALRLAPLLF  240
            TGRA  + ++DL +AL+  ++ H + +T +++++++L  + GY G++    A ++  L  
Sbjct  181  TGRADYNPAPDLASALATPKKVHFPFLT-ANELPHFLNDLAGYTGSIITKTATQIIMLTG  239

Query  241  QRPGELRAAEWAEFDLDAGTWEIPSDRMKRTKQGKAAGGAHIVPLPLQAVAILRELQLLT  300
             R  ELR A W ++D+++  WEIP++ MK  +       +HIVPL+ Q + ++++L+ ++
Sbjct  240  VRTQELRFARWEDIDFETKLWEIPAEVMKMKR-------PHIVPLSEQVIMLFKQLEPIS  292

Query  301  GNGRLLFPSVRTKDRPMSDNTVNAALRRLGYDGDTMTGHGFRAMARTILDEVLGVPAPII  360
             +  L+F +     +P+S +++N A+  LGY G  +TGHGFR    TIL+E  G  ++ I
Sbjct  293  KHHPLVFIGRNDPRKPISKESINQAIELLGYKG-RLTGHGFRHTMSTILHEQ-GFNSAWI  350

Query  361  EAQLAHTVKDPLGRAYNRTAHLQQRREMMQKWADYLDRL  399
            E QLAH  K+++  +YN++  L+ RREMMQ  ADY+D L
Sbjct  351  EMQLAHVDKNSIRDTYNHALYLDGRREMMQWYADYIDSL  389

450) NH8B_1001 in NC_016002


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  266 bits (995),  Expect = 1e-72, Method: Compositional matrix adjust.
 Identities = 168/411 (41%), Positives = 262/411 (64%), Gaps = 19/411 (4%)

Query  1    MALTKVAIDSLSPRADGKPLKVPDGQGLYVWVMPTGAKYWRLKYRFGGKEKSLAIGVYPE  60
            MALT + + +  P+  +KP K++DG G+Y+ +   G+KYWR+KYRF+GKEK L+IGVYP+
Sbjct  1    MALTDIKVKTAKPK--DKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPD  58

Query  61   VSIKEARQKKDAARRLLADGVDPGEKKKAIKRDQTIEDASSFRAVAIEWHEKMAAEWAPR  120
            V++ +AR+K+  AR+LLA G DPGE KK  K  Q +   ++F A+A EWH+  A  W+ R
Sbjct  59   VTLADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLR  118

Query  121  HAAAVLRSLEMYLFPALGDRPIAQITAMELMLELRKVEQLGLHDTTKRLRERCTAIFRRA  180
                ++ ++E  +FP +G RPIA+I +M L+  LRK+E+ G  +  +++R+RC  +FR A
Sbjct  119  YRDEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYA  178

Query  181  EVTGRASSNPAAALVDEFISPVSAPQPALEQEDLPAFLDALSTTDRITLQTKYLVQLIMI  240
             VTGRA  NPA+ L   + +P     P L  ++LP FL+ L+     ++ TK   Q+IM+
Sbjct  179  IVTGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYT-GSIITKTATQIIML  237

Query  241  LFTRIGETVRAEWDHIDLEAGVWEIPPETRKLKRKLMANASAHVVPLPRQAVEIFRQLQA  300
               R  E   A W++ID+E+ +WEIP+E  K+KR       +H+VPL+ Q + +F+QL++
Sbjct  238  TGVRTQELRFARWEDIDFETKLWEIPAEVMKMKR-------PHIVPLSEQVIMLFKQLEP  290

Query  301  FKLGDSNYVFPSFRYRKNHMSEATPLKAYERMGYGGNNKAHGHVVTHGFRATASTILNEA  360
            +   +   VF +    ++ +S  +  +A E +GY       G++  HGFR T STIL+E 
Sbjct  291  IS-KHHPLVFIGRNDPRKPISKESINQAIELLGY------KGRLTGHGFRHTMSTILHEQ  343

Query  361  GFNPDAIERQLSHKEPNKVRAAYNRAKYLEERRKMLQCW-ADYLDKMATGE  410
            GFN+  IE QL+H + N +R +YN+A YL+ RR M+Q W ADY+D +++ E
Sbjct  344  GFNSAWIEMQLAHVDKNSIRDTYNHALYLDGRREMMQ-WYADYIDSLSSRE  393

451) Dd586_3778 in NC_013592


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  264 bits (986),  Expect = 6e-72, Method: Compositional matrix adjust.
 Identities = 163/393 (42%), Positives = 266/393 (68%), Gaps = 6/393 (1%)

Query  1    MPLTDAKIRSTKPANKPIKLADGGGLYLDVRPSGSKLWRYRYRIAGKENVFALGEYPTLS  60
            M+LTD K++++KP +KP KLADGGG+YL +  +GSK WR +YR+AGKE+++++G YP ++
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   LAEARAEHDKARALVKQAIHPAHQRQLERMASYSANANTFEAVAREWIDKKSPDWTPYYL  120
            LA+AR  +  AR L+  + +P++ ++ E++A   +  NTFEA+AREW + K+  W+  Y 
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  121  RQVERFLAADVFPAIGKLPIKSVKAAHLLEIIKRIEGRGAETVALLIRQWSSAIFRYAVA  180
             ++   +  D+FP IGK PI  +K+  LLE ++++E RGA      +RQ+ + +FRYA+ 
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  181  TLRADSDPAAALKGAIRRPKVEHHKPLSRTEIEDFMQALNRYGGYRTTVIALKLMLLTFV  240
            T RAD +PA+ L +A+  PK  H   L+  E+ +F++ L  Y G   T  A ++++LT V
Sbjct  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV  240

Query  241  RTVELRKAEWREFDLDGAEWRIPAGRMKMREEHIVPLSTQAIVLLRELQTYTGGRGWLFP  300
            RT ELR A W ++D++   W IPA  MKM+  HIVPLS Q I+L+++L+  +  +  +F 
Sbjct  241  RTQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHPLVFI  300

Query  301  NYRNPQDCMTATTLNRALERMGFNGKDSIGFSAHGFRATASTILNEMGYRPDVIERQLAH  360
               +P+  ++  ++N+A+E +G++G+    +++HGFR T STIL+E G+ +  IE QLAH
Sbjct  301  GRNDPRKPISKESINQAIELLGYKGR----LTGHGFRHTMSTILHEQGFNSAWIEMQLAH  356

Query  361  TERNKVRASYNRAVYLDERRKMMQAW-ADFVNG  392
             ++N +R +YN+A+YLD RR MMQ W AD++++
Sbjct  357  VDKNSIRDTYNHALYLDGRREMMQ-WYADYIDS  388

452) Rpic_2072 in NC_010682


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  262 bits (981),  Expect = 2e-71, Method: Compositional matrix adjust.
 Identities = 172/396 (44%), Positives = 266/396 (68%), Gaps = 8/396 (2%)

Query  1    MALTDTAVRNARPAEKPIKLFDGGGLFLHITPGGQRYWRLKYRFAGKEKLLALGVYPEVG  60
            MALTD  V+ A+P +KP KL DGGG++L I   G +YWR+KYRFAGKEK+L++GVYP+V 
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   lkeardrreeakrllGEGVDPSVERKVRKVATVERAANSFEAVAREWHTKYAPGWSKSNA  120
            L +AR++R EA++LL+ G DP+  +K  K+A      N+FEA+AREWH   A  WS    
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  121  DKVIARLQNDVFPWLGGRPIAELKAPDLLAVCRRVESRGALDTAHRVLQTCGQIFRYAVA  180
            D +I  +++D+FP +G RPIAE+K+  LL   R++E RGAL+  ++V Q CG++FRYA+ 
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  181  TGRAERDPSGDLRGALPPAKGKHYAAPTDPKEVAGLLRVFDGFTGTFVVKCALLLAPMLF  240
            TGRA+ +P+ DL +AL+ +K  H++  T ++E++ +L  + G+TG+++ K A  +  +  
Sbjct  181  TGRADYNPAPDLASALATPKKVHFPFLT-ANELPHFLNDLAGYTGSIITKTATQIIMLTG  239

Query  241  VRPGELRAAEWADIDLDAGEWRFVSS--KRDVAHIVPLSTQAVAILRDLHALTGHGHYVF  298
            VR  ELR A W DID+++  W + +   K   +HIVPLS Q + ++++L++++ H   VF
Sbjct  240  VRTQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHPLVF  299

Query  299  PGARDKKKPMSEAAINAALKRMGIDTQKEFTGHGVRPIARTILREVLGFEAEVIELQLAH  358
             G  D +KP+S  +IN A+  +G   +  +TGHG R    TIL+E  GF++  IE+QLAH
Sbjct  300  IGRNDPRKPISKESINQAIELLGYKGR--LTGHGFRHTMSTILHEQ-GFNSAWIEMQLAH  356

Query  359  RKKDPNGAAYDRVAFLAVRKQMMQAW-ADYLDRLKT  393
              K++   +Y++  +L  R++MMQ W ADY+D L +
Sbjct  357  VDKNSIRDTYNHALYLDGRREMMQ-WYADYIDSLSS  391

453) MADE_1010570 in NC_011138


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  262 bits (981),  Expect = 2e-71, Method: Compositional matrix adjust.
 Identities = 172/403 (43%), Positives = 266/403 (67%), Gaps = 9/403 (2%)

Query  1    MPLTDIQIKQAQASTKDIWLTDEKGLRLLVKKNGSKYWRLKYRFQGKQKTLAIGVYPEVS  60
            M+LTDI++K A++  K   L+D  G+ LL++ NGSKYWR+KYRF GK+K L+IGVYP+V+
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   LKDAREAVSEARRQLRDDIDPSAIKQEKKHLSSVSEIELFNTQARLWWNKQKGQWSEGHA  120
            L DARE  SEAR+ L  + DP+  K+E K    +S  + F++ AR W + + ++WS    
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  121  ARIWTRLNDNALKTLGKRPIGEITPQDIIRTVQKIETRGALDVAQRVLQDIRRVCRFAVQ  180
              I   ++ + +  +GKRPI+EI P  ++ +++K+E RGAL+  ++V Q    V R+A+ 
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  181  TGVLLHNPASELSGILEKRKTSHRASLPREELPQFLRDLDAYHQQGRLLTKLAIELLVHT  240
            TG    NPA++L++ L   K  H + L  +ELP+FL DL +Y   G ++TK A ++++ T
Sbjct  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGY--TGSIITKTATQIIMLT  238

Query  241  FVRPGELAGARWDEFDLEEKLWRIPAHRMKMKSDHIVPLSRQALAVLENTKPFSARFEFV  300
             VR  EL  ARW+++D+E KLW IPA+ MKMK  HIVPLS Q + ++ +  P+S +  +V
Sbjct  239  GVRTQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHPLV  298

Query  301  FPSERDRFKQMSDNTMRMAIFRMGYDGETKGKSKANPHGFRATASSILNETGFNPDAIER  360
            F +  D  K +S +++  AI  +GY      K++   HGFR T S+IL+E GFN+  IE 
Sbjct  299  FIGRNDPRKPISKESINQAIELLGY------KGRLTGHGFRHTMSTILHEQGFNSAWIEM  352

Query  361  QLSHMERNGVRAAYTHHARYLEERKEMMQWWSDYLDSLKNNGN  403
            QL+H+++N++R +Y +HA YL+ R+EMMQW +DY+DSL +  +
Sbjct  353  QLAHVDKNSIRDTY-NHALYLDGRREMMQWYADYIDSLSSRES  394

454) intZ in NC_012759


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  262 bits (979),  Expect = 2e-71, Method: Compositional matrix adjust.
 Identities = 166/391 (43%), Positives = 264/391 (68%), Gaps = 7/391 (1%)

Query  5    PLTAKAIDAAQPQDKPYKLTDSLTPGLFLLVHPNGSKYWRFRYWLNKREFLQAIGVYPLI  64
            +LT   + +A+P+DKPYKL+D+   G++LL++ NGSKYWR +Y++  +E + +IGVYP +
Sbjct  2    ALTDIKVKTAKPKDKPYKLADG--GGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDV  59

Query  65   TLKEARRRATESRSLIANGINPVEQARKEKAIDALNMAAGFKKVAEDWFATRVGGWSESY  124
            TL +AR + +E+R L+A G +P E  + EK  + +++   F  +A +W   + + WS  Y
Sbjct  60   TLADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRY  119

Query  125  AKQVRSALEKDVYPVLGKRSIVDITARDVLALLQKKE-RTAPEQARKLRRRIGEIFKFAV  183
              ++  ++EKD++P +GKR+I +I +  +L  L+K E R A E+ RK+R+R GE+F++A+
Sbjct  120  RDEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAI  179

Query  184  ITELVTRNPVADLDTALKARRPGHNAWIPISEIPAFYKALER-AGSVQIQTAIRLLILTA  242
            +T     NP +DL +AL + +  H + +  +E+P F + L   +GS+  +TA ++++LT+
Sbjct  180  VTGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTG  239

Query  243  LRTAELRLCRWEWINLEDATITLPAEVMKARRPHVVPLSRQAVELLQDQFTRSGYSAFVF  302
            +RT ELR+ RWE I++E     +PAEVMK +RPH+VPLS Q + L+++    S   ++VF
Sbjct  240  VRTQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHPLVF  299

Query  303  PGRFMD-KPLSASAILKALERIGYKSIATGHGWRTTFSTALNESGRYSPDWIEIQLAHVP  361
             GR    KP+S  +I +A+E +GYK+  TGHG R T ST L+E G +++ WIE+QLAHV 
Sbjct  300  IGRNDPRKPISKESINQAIELLGYKGRLTGHGFRHTMSTILHEQG-FNSAWIEMQLAHVD  358

Query  362  K-GIRGVYNQAAYLKQRRAMMQDYADAIDSI  391
            K +IR+ YN+A YL  RR MMQ YAD IDS+
Sbjct  359  KNSIRDTYNHALYLDGRREMMQWYADYIDSL  389

455) intZ in NC_000913


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  262 bits (979),  Expect = 2e-71, Method: Compositional matrix adjust.
 Identities = 166/391 (43%), Positives = 264/391 (68%), Gaps = 7/391 (1%)

Query  5    PLTAKAIDAAQPQDKPYKLTDSLTPGLFLLVHPNGSKYWRFRYWLNKREFLQAIGVYPLI  64
            +LT   + +A+P+DKPYKL+D+   G++LL++ NGSKYWR +Y++  +E + +IGVYP +
Sbjct  2    ALTDIKVKTAKPKDKPYKLADG--GGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDV  59

Query  65   TLKEARRRATESRSLIANGINPVEQARKEKAIDALNMAAGFKKVAEDWFATRVGGWSESY  124
            TL +AR + +E+R L+A G +P E  + EK  + +++   F  +A +W   + + WS  Y
Sbjct  60   TLADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRY  119

Query  125  AKQVRSALEKDVYPVLGKRSIVDITARDVLALLQKKE-RTAPEQARKLRRRIGEIFKFAV  183
              ++  ++EKD++P +GKR+I +I +  +L  L+K E R A E+ RK+R+R GE+F++A+
Sbjct  120  RDEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAI  179

Query  184  ITELVTRNPVADLDTALKARRPGHNAWIPISEIPAFYKALER-AGSVQIQTAIRLLILTA  242
            +T     NP +DL +AL + +  H + +  +E+P F + L   +GS+  +TA ++++LT+
Sbjct  180  VTGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTG  239

Query  243  LRTAELRLCRWEWINLEDATITLPAEVMKARRPHVVPLSRQAVELLQDQFTRSGYSAFVF  302
            +RT ELR+ RWE I++E     +PAEVMK +RPH+VPLS Q + L+++    S   ++VF
Sbjct  240  VRTQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHPLVF  299

Query  303  PGRFMD-KPLSASAILKALERIGYKSIATGHGWRTTFSTALNESGRYSPDWIEIQLAHVP  361
             GR    KP+S  +I +A+E +GYK+  TGHG R T ST L+E G +++ WIE+QLAHV 
Sbjct  300  IGRNDPRKPISKESINQAIELLGYKGRLTGHGFRHTMSTILHEQG-FNSAWIEMQLAHVD  358

Query  362  K-GIRGVYNQAAYLKQRRAMMQDYADAIDSI  391
            K +IR+ YN+A YL  RR MMQ YAD IDS+
Sbjct  359  KNSIRDTYNHALYLDGRREMMQWYADYIDSL  389

456) RSc1871 in NC_003295


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  261 bits (975),  Expect = 4e-71, Method: Compositional matrix adjust.
 Identities = 171/396 (44%), Positives = 264/396 (67%), Gaps = 8/396 (2%)

Query  1    MALTDTAIRNAKPADKPIKLFDGGGLFLHVTPAGQRYWRLKYRFAGKEKLLAIGVYPEIG  60
            MALTD  ++ AKP DKP KL DGGG++L +   G +YWR+KYRFAGKEK+L+IGVYP++ 
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   lkeardrreeakrllGEGVDPSVERKVRKVATVERAANSFEAVAREWHAKYAPGWSESNA  120
            L +AR++R EA++LL+ G DP+  +K  K+A      N+FEA+AREWH   A  WS    
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  121  KKVLARLENDVFPWLGGRPIAEVKAPELLGVARRVESRGALDTAHRVLQTCGQIFRYAVA  180
              ++  +E+D+FP +G RPIAE+K+  LL   R++E RGAL+  ++V Q CG++FRYA+ 
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  181  TGRAERDPSGDLRGALPPAKGKHYAAPTDPKEVAGLLRMFDGFTGTFIVKCALLLAPMVF  240
            TGRA+ +P+ DL +AL+ +K  H++  T ++E++ +L  + G+TG++I K A  +  +  
Sbjct  181  TGRADYNPAPDLASALATPKKVHFPFLT-ANELPHFLNDLAGYTGSIITKTATQIIMLTG  239

Query  241  VRPGELRAAEWADIDLDAAEWRFVSS--KRDVAHIVPLSTQAVAILRDLHALTGHGRYLF  298
            VR  ELR A W DID+++  W + +   K   +HIVPLS Q + ++++L++++ H   +F
Sbjct  240  VRTQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHPLVF  299

Query  299  PGARDKAKPMSEAAINAALKRMGIDTQKEFTGHGVRPIARTILREVLGFEAEVIELQLAH  358
             G  D  KP+S  +IN A+  +G   +  +TGHG R    TIL+E  GF++  IE+QLAH
Sbjct  300  IGRNDPRKPISKESINQAIELLGYKGR--LTGHGFRHTMSTILHEQ-GFNSAWIEMQLAH  356

Query  359  RKKDPNGAAYDRVAFLAVRKQMMQAW-ADYLDELKA  393
              K++   +Y++  +L  R++MMQ W ADY+D L +
Sbjct  357  VDKNSIRDTYNHALYLDGRREMMQ-WYADYIDSLSS  391

457) intZ in NC_010473


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  261 bits (976),  Expect = 4e-71, Method: Compositional matrix adjust.
 Identities = 166/391 (43%), Positives = 264/391 (68%), Gaps = 7/391 (1%)

Query  34   PLTAKAIDAAQPQDKPYKLTDSLTPGLFLLVHPNGSKYWRFRYWLNKREFLQAIGVYPLI  93
            +LT   + +A+P+DKPYKL+D+   G++LL++ NGSKYWR +Y++  +E + +IGVYP +
Sbjct  2    ALTDIKVKTAKPKDKPYKLADG--GGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDV  59

Query  94   TLKEARRRATESRSLIANGINPVEQARKEKAIDALNMAAGFKKVAEDWFATRVGGWSESY  153
            TL +AR + +E+R L+A G +P E  + EK  + +++   F  +A +W   + + WS  Y
Sbjct  60   TLADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRY  119

Query  154  AKQVRSALEKDVYPVLGKRSIVDITARDVLALLQKKE-RTAPEQARKLRRRIGEIFKFAV  212
              ++  ++EKD++P +GKR+I +I +  +L  L+K E R A E+ RK+R+R GE+F++A+
Sbjct  120  RDEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAI  179

Query  213  ITELVTRNPVADLDTALKARRPGHNAWIPISEIPAFYKALER-AGSVQIQTAIRLLILTA  271
            +T     NP +DL +AL + +  H + +  +E+P F + L   +GS+  +TA ++++LT+
Sbjct  180  VTGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTG  239

Query  272  LRTAELRLCRWEWINLEDATITLPAEVMKARRPHVVPLSRQAVELLQDQFTRSGYSAFVF  331
            +RT ELR+ RWE I++E     +PAEVMK +RPH+VPLS Q + L+++    S   ++VF
Sbjct  240  VRTQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHPLVF  299

Query  332  PGRFMD-KPLSASAILKALERIGYKSIATGHGWRTTFSTALNESGRYSPDWIEIQLAHVP  390
             GR    KP+S  +I +A+E +GYK+  TGHG R T ST L+E G +++ WIE+QLAHV 
Sbjct  300  IGRNDPRKPISKESINQAIELLGYKGRLTGHGFRHTMSTILHEQG-FNSAWIEMQLAHVD  358

Query  391  K-GIRGVYNQAAYLKQRRAMMQDYADAIDSI  420
            K +IR+ YN+A YL  RR MMQ YAD IDS+
Sbjct  359  KNSIRDTYNHALYLDGRREMMQWYADYIDSL  389

458) Tbd_2005 in NC_007404


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  261 bits (975),  Expect = 5e-71, Method: Compositional matrix adjust.
 Identities = 177/400 (45%), Positives = 261/400 (66%), Gaps = 11/400 (2%)

Query  17   VALTDTAVKKAKPGDKPYKMADEKGLYLLVNQAG-KYWRMDYRFLGKRKTLALGVYSDVS  75
            +ALTD  VK AKP DKPYK+AD  G+YLL+N  G KYWRM YRF GK K L++GVY+DV+
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  76   LararqkrddaraMLADGTDPGEQRKETKRANQAAQANSFEAVAREWHAMKLKRKWTQST  135
            LA AR+KR +AR +LA G DPGE +KE K A+Q +  N+FEA+AREWH +K  R W+   
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADR-WSLRY  119

Query  136  ADKTMAQLEAYVFPEMGHLPIASVKASQLLAMLRKVENRGIAYTAVRLREVCGQIFRYGV  195
             D  +  +E  +FP +G  PIA +K+ +LL  LRK+E+RG      ++R+ CG++FRY++
Sbjct  120  RDEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAI  179

Query  196  ATGRAEDNPAAHLLGALHKPEVNHRPAITDRRGFGAFLRDLREATGYDAVTRHAAYFALL  255
             TGRA+ NPA++L +AL  P   H P +T    +  FL DL   TG   +T+ A+ + +L
Sbjct  180  VTGRADYNPAPDLASALATPKKVHFPFLTA-NELPHFLNDLAGYTG-SIITKTATQIIML  237

Query  256  TFVRAQEFRYAKWEEIDWQAKEWKVPAKRMKTGKALPAHTVPLSQQALALLTELKNLTGH  315
            T VR+QE+R+A+WE+ID ++K W +PA  MK  +   +H VPLS+Q + L+ +L  ++ H
Sbjct  238  TGVRTQELRFARWEDIDFETKLWEIPAEVMKMKR---PHIVPLSEQVIMLFKQLEPISKH  294

Query  316  SPYLFPKVKGYGDAEVISENTVGKMLNKMGYQGRQCVHGFRASARSILSEQGWSREAMER  375
             P +F  +   +    IS +++ + ++ +GY+GR   HGFR +  +IL EQG +   +E 
Sbjct  295  HPLVF--IGRNDPRKPISKESINQAIELLGYKGRLTGHGFRHTMSTILHEQGFNSAWIEM  352

Query  376  QLDHKETDSTVAAYARSEHLPERRNMMQAW-ADTCDALET  414
            QL H + +S   +Y ++  L  RR+MMQ W AD  D+L +
Sbjct  353  QLAHVDKNSIRDTYNHALYLDGRREMMQ-WYADYIDSLSS  391

459) Despr_0274 in NC_014972


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  261 bits (975),  Expect = 5e-71, Method: Compositional matrix adjust.
 Identities = 175/398 (44%), Positives = 272/398 (69%), Gaps = 15/398 (3%)

Query  2    LVDTAIKNAKPKEQPYKLTDGKGLYLLVKSTG-KYFRFNYRFQDKQKTLALGVYPDVSla  60
            L D  +K AKPK++PYKL+DG G+YLL+++ G KY R +YRF +K+K L++GVYPDV+LA
Sbjct  3    LTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVTLA  62

Query  61   garerlaearkliaDGIDPGEQRKMDK--EAATNLNSVEAVAREWFLKNKHTWTDNHARD  118
            +ARE+ +EARKL+A G DPGE +K +K  +  +  N+ EA+AREW   + + W+     +
Sbjct  63   DAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYRDE  122

Query  119  IITRLEANVFPWLGRTPIADVTAPMLLAVLRRIEDRGAIETAHRIKQMCGQVFRYAVATG  178
            II  +E ++FP +G+ PIA++ +  LL  LR++E RGA+E  ++++Q CG+VFRYA+ TG
Sbjct  123  IIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIVTG  182

Query  179  RAERDPSADLRGALPPPPSKSMATITDPKGVSALLRAIRGYKGEIITRCALRLAPLTFVR  238
            RA+ +P++DL +AL+ P     + +T ++ ++ +L  + GY G IIT+ A ++  LT VR
Sbjct  183  RADYNPAPDLASALATPKKVHFPFLT-ANELPHFLNDLAGYTGSIITKTATQIIMLTGVR  241

Query  239  PGELRHAEWADIDLDRAEWKIPPEKRKLKKALKAIPQNFHFVPLSRQALAVLRELQPLTG  298
              ELR A W DID++   W IP+E  K+K++        H+VPLS Q + ++++L+P++ 
Sbjct  242  TQELRFARWEDIDFETKLWEIPAEVMKMKRP--------HIVPLSEQVIMLFKQLEPISK  293

Query  299  EGRYVFPSLRTGERPMSENTVNAALRRMGYAKDEMTGHGFRAMASTLLHEQGWPSDVIER  358
            +   VF +     +P+S +++N A+  +GY K+ +TGHGFR   ST+LHEQG  S  IE 
Sbjct  294  HHPLVFIGRNDPRKPISKESINQAIELLGY-KGRLTGHGFRHTMSTILHEQGFNSAWIEM  352

Query  359  QLAHKERNSVKAAYNYAQHIPERRKMMQAW-ADYLDAL  395
            QLAH ++NS++ +YN A  +  RR MMQ W ADY+D+L
Sbjct  353  QLAHVDKNSIRDTYNHALYLDGRREMMQ-WYADYIDSL  389

460) amb0488 in NC_007626


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  261 bits (975),  Expect = 5e-71, Method: Compositional matrix adjust.
 Identities = 166/397 (42%), Positives = 265/397 (67%), Gaps = 7/397 (1%)

Query  1    MPLTDLQikaakpadkpikladGGGMFLLVTPQDQRYWRLKYRFGGKEKLLALGVYPDVT  60
            M+LTD+++K+AKP DKP KLADGGGM+LL+  ++ +YWR+KYRF+GKEK+L++GVYPDVT
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   IKTARQLRDDAKKQLANGIDPSDARKAKKSSQLLDGPDSFENVAREWFAKNVATWAETHS  120
            +  AR+ R +A+K LA G DP++A+K  K +Q +   ++FE +AREW   +   W+    
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  121  SKVLQRLESDVFPLIGTKPIGSITAPMILAVARKIEARGANDTAHRAVQNAGQIMRYAVA  180
              +++ +E D+FP IG +PI+ I +  +L   RK+E RGA +  ++  Q  G++ RYA+ 
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  181  TGRAERDPTGDLRGALPPVRHKHFAALTDPKLVGELLRAFDAFEGTVVVKAALQLAPLVF  240
            TGRA+ +P+ DL +AL+  +  HF+ LT   L  ++L  + ++ G+++ K+A Q+  L  
Sbjct  181  TGRADYNPAPDLASALATPKKVHFPFLTANEL-PHFLNDLAGYTGSIITKTATQIIMLTG  239

Query  241  VRPGELRKAKWADIDLDAGSWAFHASKARKGETIEHLVPLSTQAVEILRDLHQYTGNREC  300
            VR  ELR A+W DID+++  W + A   +      H+VPLS Q + ++++L+  + ++  
Sbjct  240  VRTQELRFARWEDIDFETKLWEIPAEVMKMKRP--HIVPLSEQVIMLFKQLEPISKHHPL  297

Query  301  LFPGR-DPRKPMSEAAVNAALRRLGYDTKTEITGHGFRAMARTILAEQLGEDPHVIEQQL  359
            +F GR DPRKP+S  ++N A+  LGY  K  +TGHGFR    TIL EQ G ++  IE QL
Sbjct  298  VFIGRNDPRKPISKESINQAIELLGY--KGRLTGHGFRHTMSTILHEQ-GFNSAWIEMQL  354

Query  360  AHRVPDALGRAYNRTKYIEQRRAMMQRWSDYLDTLKA  396
            AH   +++  +YN++ Y++ RR MMQ+ +DY+D+L +
Sbjct  355  AHVDKNSIRDTYNHALYLDGRREMMQWYADYIDSLSS  391

461) BTH_I0928 in NC_007651


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  260 bits (973),  Expect = 7e-71, Method: Compositional matrix adjust.
 Identities = 170/388 (44%), Positives = 267/388 (69%), Gaps = 4/388 (1%)

Query  47   PLTDLKVRRAKPAEQPYRLADGKGLYLQVMPNGSRYWRMKYRFDGKEKLASFGVYPEVSl  106
            +LTD+KV+ AKP ++PY+LADG G+YL +  NGS+YWRMKYRF GKEK+ S+GVYP+V+L
Sbjct  2    ALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVTL  61

Query  107  aqarqaclaarkllaaGTDPTEQKREIKRARAIEASSSFEAVAREWFESQKDGWTEVYAN  166
            A+AR+    ARKLLAAG DP E K+E K A+ +   ++FEA+AREW + + D W+  Y +
Sbjct  62   ADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYRD  121

Query  167  KVINSLEVDAFPRIGSKPLRDIEAPDMLEIVRAIEARGVRETAKRVLQRSRAVFQYGIMT  226
             +I+++E D FP IG +P+ +I +  +LE +R +E RG  E  ++V QR   VF+Y+I+T
Sbjct  122  EIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIVT  181

Query  227  GRCSRNPAADIDAETVLKKGQGVKHMARVKPVEIPQLMRDIAAYSGDRVTQLALRFMALT  286
            GR   NPA+D+   + L   + V H + + + E+P+++ D+A+Y+G  +T+ A +++ LT
Sbjct  182  GRADYNPAPDL--ASALATPKKV-HFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLT  238

Query  287  FTRTTEMINAEWDEFDERAAEWRIPPDRMKMRDPHIVPLSRQALEVLAALRELNGNQRLV  346
              RT E+  A W+++D  +  W IP++ MKM+ PHIVPLS Q + ++  L  ++ ++ LV
Sbjct  239  GVRTQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHPLV  298

Query  347  FYS-VQGRSHISNNTMLYALYRMGYKSRMTGHGFRGLAATVLRELGYSRDVVDRQLAHAE  405
            F +  + R  IS++++  A+  +GYK+R+TGHGFR   +T+L+E G++   ++ QLAH +
Sbjct  299  FIGRNDPRKPISKESINQAIELLGYKGRLTGHGFRHTMSTILHEQGFNSAWIEMQLAHVD  358

Query  406  RNQVTAAYVHAEYLPERRKMMQHWADYL  433
            +N +  +Y HA YL  RR MMQ  ADY+
Sbjct  359  KNSIRDTYNHALYLDGRREMMQWYADYI  386

462) PAU_03981 in NC_012962


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  260 bits (973),  Expect = 7e-71, Method: Compositional matrix adjust.
 Identities = 173/408 (43%), Positives = 266/408 (66%), Gaps = 27/408 (6%)

Query  1    MKLNARQIETAKPKDKAYKLADGGGLYLEITPRGSKYWRMKYRRPTDKKEDRLAFGVYPV  60
            M L   ++ TAKPKDK+YKLADGGG+YL I   GSKYWRMKYR +   KE  L++GVYP 
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAG--KEKMLSIGVYPD  58

Query  61   ISLadarakrdeakkLIASGVDPKATQKEAQ--AEVSGEFNFETIARKWHA-SNKRWGDY  117
            ++LADAR KR EA+KL+A+G DP  ++KE +   ++S    FE+IAR WH     RW+  
Sbjct  59   VTLADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLR  118

Query  118  NRARVLRSLEQYIFPHIGKVDVRQLKTSHLLAPIRVVDDAGKHDVAQRLQQRVTAIMRYA  177
             R  ++ ++E+ IFP IGK  + ++K   LL ++R ++  G  +  ++++QR   + RYA
Sbjct  119  YRDEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYA  178

Query  178  VQNDIIDSNPAIDMAGALTMPKTKHYPALPSNCFPELLERINRYCGRKITRLAVVLTLLT  237
            +  +  D NPA D+A+AL+ PK  H+P L +N +P++L+ +  Y G  IT+ A  + +LT
Sbjct  179  IVTGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLT  238

Query  238  FVRSSELRFARWDEIDFDISVWQIPGQRNPIEGVRYSYRGMKMKSAHIVPLSNQAIDVLQ  297
             VR+ ELRFARW++IDF+  +W+IP++             MKMK +HIVPLS+Q I +++
Sbjct  239  GVRTQELRFARWEDIDFETKLWEIPAE------------VMKMKRPHIVPLSEQVIMLFK  286

Query  298  QLKELSGDNELLFPGDHDPNKVMSENTVNNALRVMGYDTKTEVCGHGFRAMACSALVESG  357
            QL  +S ++ L+F G +DP K +S +++N+A+ ++GY  K  + GHGFR    + L E G
Sbjct  287  QLEPISKHHPLVFIGRNDPRKPISKESINQAIELLGY--KGRLTGHGFRHTMSTILHEQG  344

Query  358  L---WSKDAVERQMSHTERNGVRAAYIHTSEHLEERRLMIQWWADYLD  402
            +   W    +E Q++H ++N++R +Y H+   L+ RR M+QW ADY+D
Sbjct  345  FNSAW----IEMQLAHVDKNSIRDTYNHAL-YLDGRREMMQWYADYID  387

463) BCAL2961 in NC_011000


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  259 bits (966),  Expect = 2e-70, Method: Compositional matrix adjust.
 Identities = 178/401 (45%), Positives = 271/401 (68%), Gaps = 10/401 (2%)

Query  1    MPLTDTTIRNTKPAEKPVKLFDGGGLFLLVTPAGQRYWRLKYRAAGKEKLLALGVYPDVT  60
            M+LTD  ++ +KP +KP KL DGGG++LL+   G +YWR+KYR AGKEK+L++GVYPDVT
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   laaarrkrdeareklaaGIDPGEAKKAEKRTARLSAENSFEAVAREWHIKYAPTWSESHG  120
            LA AR KR EAR  LAAG DPGEAKK EK + ++S  N+FEA+AREWH   A  WS    
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  121  SRILRRLEVDAFPWIGSKPIAELAPPDVLEVLRRVEKRGALETAHRLHANVSQVCRYAVA  180
              I+  +E D FP IG +PIAE+ P  +LE LR++EKRGALE  ++++   ++V RYA+ 
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  181  TGRAQRDVTADLRGALPPVQQEHMAAVTDPKQVAELLRSIDGYQGTFPVLCALRLFPLLF  240
            TGRA+ + ++DL +AL+  ++ H + +T +++++++L  + GY G++    A +++ L  
Sbjct  181  TGRADYNPAPDLASALATPKKVHFPFLT-ANELPHFLNDLAGYTGSIITKTATQIIMLTG  239

Query  241  QRPGELRAAEWSEFDLDASTWEIPSERMKRTKQGKASGGAHIVPLSAQAVAILRDLHALT  300
             R  ELR A W ++D+++  WEIP+E MK  +       +HIVPLS Q + ++++L++++
Sbjct  240  VRTQELRFARWEDIDFETKLWEIPAEVMKMKR-------PHIVPLSEQVIMLFKQLEPIS  292

Query  301  GNSRFLFPSVRTKDRPMSDNTINGALRRLGYDGDTMTGHGFRAMARTILDEVLGVPVAIV  360
             +  ++F +     +P+S ++IN A+  LGY G  +TGHGFR    TIL+E  G   A +
Sbjct  293  KHHPLVFIGRNDPRKPISKESINQAIELLGYKG-RLTGHGFRHTMSTILHEQ-GFNSAWI  350

Query  361  EAQLAHAVKDPLGRAYNRTAHLPQRREMMQRWADYLDQLKA  401
            E QLAH  K+++  +YN++  L  RREMMQ+ ADY+D L +
Sbjct  351  EMQLAHVDKNSIRDTYNHALYLDGRREMMQWYADYIDSLSS  391

464) Ppro_1315 in NC_008609


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  259 bits (968),  Expect = 2e-70, Method: Compositional matrix adjust.
 Identities = 156/364 (43%), Positives = 247/364 (68%), Gaps = 6/364 (1%)

Query  2    PAGGKWWRFKYRFGGKEKLLSFGTYPDISLAEAQAKRHEARNQVANGIDPGAERKELKRA  61
              G+K WR KYRF+GKEK+LS+G YPD++LA+A+ KR EAR+ +A G DPG  +KE K A
Sbjct  32   TNGSKYWRMKYRFAGKEKMLSIGVYPDVTLADAREKRSEARKLLAAGGDPGEAKKEEKIA  91

Query  62   EQEQQEIVENSFKVVAREWHGKFSGQWSPGHSMTTMDRLERDIFPWLGSKPVADVKPVDL  121
               QQ  + N+F  +AREWH   +++WS       +D +E+DIFP +G +P+A++KP+ L
Sbjct  92   ---QQMSLKNTFEAIAREWHQLKADRWSLRYRDEIIDTFEKDIFPYIGKRPIAEIKPMKL  148

Query  122  LAVLRRIEGRGALETAHRVRTICGQVLRYAVATGRAERDSAADLRGALPPVREKHHAALT  181
            L  LR++E RGALE  ++VR  CG+V+RYA+ TGRA+ ++A+DL +AL+  +  H + LT
Sbjct  149  LEALRKMEKRGALEKMRKVRQRCGEVFRYAIVTGRADYNPAPDLASALATPKKVHFPFLT  208

Query  182  DPKEVADLLRAIDGFKGTFHVKCALKLAPMLFVRPGELRQMEWAEIDLDGAQWNIPAEKM  241
             ++E++++L  + G+ G++  K A ++  +  VR  ELR   W +ID++   W+IPAE M
Sbjct  209  -ANELPHFLNDLAGYTGSIITKTATQIIMLTGVRTQELRFARWEDIDFETKLWEIPAEVM  267

Query  242  KMKQAHIVSLCKQAVAILKELQPLTGAGRYVFLCHRSPLRPMTNNAINAAFRRMGYTSDE  301
            KMK++HIV+L  Q + ++K+L+P++     VF+ +  P +P+++++IN A+  +GY +  
Sbjct  268  KMKRPHIVPLSEQVIMLFKQLEPISKHHPLVFIGRNDPRKPISKESINQAIELLGYKG-R  326

Query  302  MTGHGFRAMARTILDEVLQVRPDFVEHQLAHVVRDPNGRAYNRTAHLKERRKMMQLWADY  361
            +TGHGFR    TIL+E     +  +E QLAHV +++   +YN++  L  RR MMQ  ADY
Sbjct  327  LTGHGFRHTMSTILHEQ-GFNSAWIEMQLAHVDKNSIRDTYNHALYLDGRREMMQWYADY  385

Query  362  LDGL  365
            +D+L
Sbjct  386  IDSL  389

465) SBO_4322 in NC_007613


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  259 bits (966),  Expect = 2e-70, Method: Compositional matrix adjust.
 Identities = 139/329 (43%), Positives = 223/329 (68%), Gaps = 15/329 (4%)

Query  1    MALTDAKIRAAKPTDKAYKLTDGTGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60
            MALTD K+++AKP DK+YKL+DG GM+LL++ NGS+YWR++YR+ GKEK L++GVYP+V+
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQL--SFEHIARRWHA-SNKQWAQSHS  117
            L++AR KR EARKL++ G DP E K+  K+  ++ L  +FE IAR WH     +W+    
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  118  DKVLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQ  177
            D ++ ++E ++FP+IG+R I+ ++   LL ++R  E +   E   +++QR + V RYA+ 
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  178  SGIIRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQTVTQLAVMLNLLVFI  237
            +G   YNPA D+A+AL+T K+ H P L  + LP++L+ +++Y G  +T+ A  + +L  +
Sbjct  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV  240

Query  238  RSSELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQAVAILTEL  297
            R+ ELR+ARW +ID++  +W IPAE              KM+ PH+VPLS Q + ++ +L
Sbjct  241  RTQELRFARWEDIDFETKLWEIPAE------------VMKMKRPHIVPLSEQVIMLFKQL  288

Query  298  QTWAGENGLIFTGAHDPRKPISENVMNAS  326
            +  + ++ L+F G +DPRKPIS + +N +
Sbjct  289  EPISKHHPLVFIGRNDPRKPISKESINQA  317

466) lpa_00270 in NC_014125


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  259 bits (968),  Expect = 2e-70, Method: Compositional matrix adjust.
 Identities = 168/400 (42%), Positives = 260/400 (65%), Gaps = 11/400 (2%)

Query  9    PLQDTTIRNAKAEKKPYKMPDERGLYLEVAPSGGKWWRFRYRFEGKDKRISLGIYPDVSL  68
            +L D  ++ AK+  KPYK++D  G+YL +  +G+K WR +YRF GK+K +S+G+YPDV+L
Sbjct  2    ALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVTL  61

Query  69   KQARDRRDECRTMVANEIDPSEHRkakkaakIENAANSFEVVAREWF-LKFSSSGLWSEG  127
             +AR++R E R ++A   DP+E +K  K A+  +  N+FE +AREW  LK   ++ WS  
Sbjct  62   ADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLK---ADRWSLR  118

Query  128  HADKIIQRLERDIFPWIGNIPISDINAPKLLSVVRRIESRGALDTAHRALGNCGQIFRYA  187
              D II+ +E+DIFP IG+ PI++I++ KLL  +R++E RGAL+  ++    CG++FRYA
Sbjct  119  YRDEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYA  178

Query  188  IATGRAERDPSQDLRSALPPVKETHFAAVTEPKDVAKLLRALDDYEGTLIVKCALRLAPL  247
            I TGRA+ +P+ DL SAL+  K  HF+ +T +++++ +L  L +Y G++I K A ++  L
Sbjct  179  IVTGRADYNPAPDLASALATPKKVHFPFLT-ANELPHFLNDLAGYTGSIITKTATQIIML  237

Query  248  VFVRPGELRSAEWEHIDFDTAEWRY--KVTKTDTLHIVPLSQQALDILKELHPQTGRDRY  305
              VR  ELR A WE+IDF+T  W     V K    HIVPLS+Q + ++K+L+P + ++  
Sbjct  238  TGVRTQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHPL  297

Query  306  VFPSARDKKRPMSDNAILAAMRRMGINKEEMTTHGFRAMARTILDEVLQFRPDIIEHQLA  365
            VF +  D ++P+S ++I  A+  +G  K  +T HGFR    TIL+E   F +  IE QLA
Sbjct  298  VFIGRNDPRKPISKESINQAIELLGY-KGRLTGHGFRHTMSTILHEQ-GFNSAWIEMQLA  355

Query  366  HAVRDPNGRAYNRTAHLPERKKMMQAW-ADYLDELKLRKS  404
            H  +++   +YN++  L  R+ MMQ W ADY+D L  R S
Sbjct  356  HVDKNSIRDTYNHALYLDGRREMMQ-WYADYIDSLSSRES  394

467) LPC_0202 in NC_009494


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  259 bits (968),  Expect = 2e-70, Method: Compositional matrix adjust.
 Identities = 168/400 (42%), Positives = 260/400 (65%), Gaps = 11/400 (2%)

Query  9    PLQDTTIRNAKAEKKPYKMPDERGLYLEVAPSGGKWWRFRYRFEGKDKRISLGIYPDVSL  68
            +L D  ++ AK+  KPYK++D  G+YL +  +G+K WR +YRF GK+K +S+G+YPDV+L
Sbjct  2    ALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVTL  61

Query  69   KQARDRRDECRTMVANEIDPSEHRkakkaakIENAANSFEVVAREWF-LKFSSSGLWSEG  127
             +AR++R E R ++A   DP+E +K  K A+  +  N+FE +AREW  LK   ++ WS  
Sbjct  62   ADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLK---ADRWSLR  118

Query  128  HADKIIQRLERDIFPWIGNIPISDINAPKLLSVVRRIESRGALDTAHRALGNCGQIFRYA  187
              D II+ +E+DIFP IG+ PI++I++ KLL  +R++E RGAL+  ++    CG++FRYA
Sbjct  119  YRDEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYA  178

Query  188  IATGRAERDPSQDLRSALPPVKETHFAAVTEPKDVAKLLRALDDYEGTLIVKCALRLAPL  247
            I TGRA+ +P+ DL SAL+  K  HF+ +T +++++ +L  L +Y G++I K A ++  L
Sbjct  179  IVTGRADYNPAPDLASALATPKKVHFPFLT-ANELPHFLNDLAGYTGSIITKTATQIIML  237

Query  248  VFVRPGELRSAEWEHIDFDTAEWRY--KVTKTDTLHIVPLSQQALDILKELHPQTGRDRY  305
              VR  ELR A WE+IDF+T  W     V K    HIVPLS+Q + ++K+L+P + ++  
Sbjct  238  TGVRTQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHPL  297

Query  306  VFPSARDKKRPMSDNAILAAMRRMGINKEEMTTHGFRAMARTILDEVLQFRPDIIEHQLA  365
            VF +  D ++P+S ++I  A+  +G  K  +T HGFR    TIL+E   F +  IE QLA
Sbjct  298  VFIGRNDPRKPISKESINQAIELLGY-KGRLTGHGFRHTMSTILHEQ-GFNSAWIEMQLA  355

Query  366  HAVRDPNGRAYNRTAHLPERKKMMQAW-ADYLDELKLRKS  404
            H  +++   +YN++  L  R+ MMQ W ADY+D L  R S
Sbjct  356  HVDKNSIRDTYNHALYLDGRREMMQ-WYADYIDSLSSRES  394

468) intB in NC_009076


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  259 bits (966),  Expect = 3e-70, Method: Compositional matrix adjust.
 Identities = 169/399 (43%), Positives = 258/399 (65%), Gaps = 14/399 (3%)

Query  1    MPLTDTAVKNAKPAAKPYKLTDGGGMYLLVQPNGAKYWRMAYRLHGKQKLLAIGVYPAVG  60
            M+LTD  VK AKP  KPYKL+DGGGMYLL++ NG+KYWRM YR+ GK+K+L+IGVYP V 
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   LATARERRDDARKKVAAGIDPSAAKRVEKRVARLAASNTFEAVAHGW---MNERKTVVEI  117
            LA ARE+R +ARK +AAG DP+ AK+ EK   +++  NTFEA+A+ W     +R ++   
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSL---  117

Query  118  GQY-EKTLARFDSDVFPWLGKRPIAEVDAPEILTALKRIDSRGARYTAHRVRSEISRVFR  176
             +Y +  +  F+ D+FP +GKRPIAE+ +  +L AL++++ RGA    ++VR   + VFR
Sbjct  118  -RYRDEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFR  176

Query  177  YGIKEGYCKADPARDLVDAIPPAQTTHFAAITDPAKVAEMLRAFDGFSGTFPVLCALKLA  236
            Y+I  G    +PA DL  A++ ++  HF+ +T +  +++ L  + G++G++    A ++ 
Sbjct  177  YAIVTGRADYNPAPDLASALATPKKVHFPFLT-ANELPHFLNDLAGYTGSIITKTATQII  235

Query  237  PLLFVRPGELRQAQWAQFDLDKGEWRYL--VTKTKTEHLVPLSLQAIAILRELHALTGAG  294
             L  VR  ELR A+W ++D++   W     V K K  H+VPLS Q I ++++L++++   
Sbjct  236  MLTGVRTQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHH  295

Query  295  RYVFPGARDRNRPMSEAAINAALRRLGYDTRTEITGHGFRAMARTILHEELEQKPEVIEH  354
              VF G  D  +P+S  +IN A+  LGY  R  +TGHGFR    TILHE+   ++  IE 
Sbjct  296  PLVFIGRNDPRKPISKESINQAIELLGYKGR--LTGHGFRHTMSTILHEQ-GFNSAWIEM  352

Query  355  QLAHTVPDNLGSAYNRTKFIKKRREMMQKWADYLDCLKA  393
            QLAH   +++  +YN++ ++  RREMMQ  ADY+D L +
Sbjct  353  QLAHVDKNSIRDTYNHALYLDGRREMMQWYADYIDSLSS  391

469) SbBS512_E4662 in NC_010658


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  258 bits (965),  Expect = 2e-70, Method: Compositional matrix adjust.
 Identities = 139/329 (43%), Positives = 224/329 (69%), Gaps = 15/329 (4%)

Query  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60
            MALTD K+++AKP DK+YKL+DG+GM+LL++ NGS+YWR++YR+ GKEK L++GVYP+V+
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQL--SFEHIARRWHA-SNKQWAQSHS  117
            L++AR KR EARKL++ G DP E K+  K+  ++ L  +FE IAR WH     +W+    
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  118  DKVLKSLETHVFPFIGNRDITTLNTPDLLIPVRATEAKQIYEIASRLQQRISAVMRYAVQ  177
            D ++ ++E ++FP+IG+R I+ ++   LL ++R  E +   E   +++QR + V RYA+ 
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  178  SGIIRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFI  237
            +G   YNPA D+A+AL+T K+ H P L  + LP++L+ +++Y G  +T+ A  + +L  +
Sbjct  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV  240

Query  238  RSSELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQAVAILTEL  297
            R+ ELR+ARW +ID++  +W IPAE              KM+ PH+VPLS Q + ++ +L
Sbjct  241  RTQELRFARWEDIDFETKLWEIPAE------------VMKMKRPHIVPLSEQVIMLFKQL  288

Query  298  QTWAGENGLIFTGAHDPRKPISENVMNAS  326
            +  + ++ L+F G +DPRKPIS + +N +
Sbjct  289  EPISKHHPLVFIGRNDPRKPISKESINQA  317

470) Ent638_3101 in NC_009436


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  258 bits (965),  Expect = 3e-70, Method: Compositional matrix adjust.
 Identities = 159/387 (42%), Positives = 252/387 (66%), Gaps = 2/387 (0%)

Query  7    PLTNNEILKAKPREKDFTLHDGDGLFLLVKTSGKKLWRFRYQRPNSTSRTNLSLGAYPAL  66
            +LT+  +  AKP++K + L DG+G++LL++T+G K WR +Y+ +       LS+G YP +
Sbjct  2    ALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKM--LSIGVYPDV  59

Query  67   TLAAARLIRDQHLSLLAQDIDPqqqqeivseqrqiKLDSVFSTVAANWFQLKSKSVTPDY  126
            TLA AR  R +   LLA + DP + +      +Q+ L + F ++A +W QLK+   +  Y
Sbjct  60   TLADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRY  119

Query  127  AKDIWRSLDKDVFPAIGEIPVQEIKARTIIEALEPIKARGALETVRRLVQRINEIMIYAV  186
              +I  +++KD+FP IG  P+ EIK+  ++EAL  +  RGALE +R++ QR  E+  YA+
Sbjct  120  RDEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAI  179

Query  187  NTGLLDANPASGVGMAFERPKKQNMLTLRPEELPKLMRSIGMSNLSVPTRCLIELQLLTL  246
             TG  D NPA++++ A+  PKK +   L ++ELP ++  ++    S+ T+   ++ +LT 
Sbjct  180  VTGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTG  239

Query  247  VRPSEASGARWAEIDIDAKLWKIPAERMKAKREHIVPLSPQALEILEIMTPISAHREYVF  306
            VR  E   ARW +ID+++KLW IPAE MK KR HIVPLS Q + ++  + PIS H+  VF
Sbjct  240  VRTQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHPLVF  299

Query  307  PSRNDPKQPMNSQTANAAIKRIGYGGRLVAHGLRSIASTAMNEEGFNPDVIEAALAHSDK  366
             +RNDP++P++ ++ N AI  +GY GRL +HG+R   ST ++E+GFN+  IE  LAH DK
Sbjct  300  IGRNDPRKPISKESINQAIELLGYKGRLTGHGFRHTMSTILHEQGFNSAWIEMQLAHVDK  359

Query  367  NEVRRAYNRSTYLEARRELMDWWGSAI  393
            N +R +YN++ YL++RRE+M+W +  I
Sbjct  360  NSIRDTYNHALYLDGRREMMQWYADYI  386

471) intB in NC_013892


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  258 bits (965),  Expect = 3e-70, Method: Compositional matrix adjust.
 Identities = 169/409 (42%), Positives = 263/409 (65%), Gaps = 28/409 (6%)

Query  1    MKLNARQIETAKPKEKTYKLADGGGLYLEVSSRGSKYWRMKYYRPTDKKEDRLAFGVYPT  60
            M L   ++ TAKPK+K YKLADGGG+YL +++ GSKYWRMKY      KE  L++GVYP 
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKY--RFAGKEKMLSIGVYPD  58

Query  61   VSLadarakrdeakkLMAQGIDPKAEKKGTPTPAKV---NSFEQVARAWHA-SNKRWSDS  116
            V+LADAR KR EA+KL+A G DP   KK    + ++   N+FE +AR WH     RWS  
Sbjct  59   VTLADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLR  118

Query  117  HRQKILRSLEQYIFPHIGARDITTLRTSQLLAPVKAIDEQDKHDIAQRLRQRITAIMRYA  176
             R+ I+ ++E+ IFP IG R I+ ++  +LL +++ ++ ++  +  +++RQR   + RYA
Sbjct  119  YRDEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYA  178

Query  177  VQNDILESNPANDMTGALTTAKSRHHPALPHECLPDFLNRLSAYRGRLLTKIAVELALLT  236
            +  +  + NPA D+++AL+T+K  H P L  + LP+FLN L++Y G ++TK A ++ +LT
Sbjct  179  IVTGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLT  238

Query  237  FVRSSELRFARWQEIDLENSVWKIPATRQPIKGVRFSERGMKMKTDHIVPLSRQAVGLIN  296
             VR+ ELRFARW++ID+E  +W IPA              MKMK  HIVPLS Q + L++
Sbjct  239  GVRTQELRFARWEDIDFETKLWEIPAE------------VMKMKRPHIVPLSEQVIMLFK  286

Query  297  ALHELSGNCDVMFPSDHNSAKVMSENTVNKALRAMGYDTQTEVCGHGFRTMARGAMGESG  356
             L+ +S +  ++F + +++ K +S +++N+A+  +GY  +  + GHGFR      + E G
Sbjct  287  QLEPISKHHPLVFIGRNDPRKPISKESINQAIELLGYKGR--LTGHGFRHTMSTILHEQG  344

Query  357  L---WSDDAIERQLSHIERNNVRAAYIHTSKHLDERRLMVQWWADYLDA  402
            +   W    IE QL+H+++N++R +Y H+   LD RR M+QW ADY+D+
Sbjct  345  FNSAW----IEMQLAHVDKNSIRDTYNHAL-YLDGRREMMQWYADYIDS  388

472) intC in NC_009659


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  258 bits (963),  Expect = 4e-70, Method: Compositional matrix adjust.
 Identities = 171/404 (43%), Positives = 262/404 (65%), Gaps = 14/404 (3%)

Query  7    PLTDLRIKAAKPKEKPYQLADGEGMYLEILPSGSKVWRMAYRQENRTTSTRLTFGHYPAV  66
            +LTD+++K+AKPK+KPY+LADG GMYL I  +GSK WRM YR   +     L++G YP V
Sbjct  2    ALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGK--EKMLSIGVYPDV  59

Query  67   GLAEARRKRADTKKQIVEGVDPAQARRVEKaisataaantfeavaRMWHQNKLEQWQPRT  126
             LA+AR KR++++K +  G DP++A++ EK     +  NTFEA+AR WHQ K ++W  R 
Sbjct  60   TLADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRY  119

Query  127  ANNILRRLEQDVFPLIGKRPIAEVKAPVMLDVLRQIEKRGAAEIARRNAQVCSQIFRYAI  186
             ++I+  +E+D+FP IGKRPIAE+K+  +L+ LR++EKRGA E  R+  Q C+++FRYAI
Sbjct  120  RDEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAI  179

Query  187  ACGIAENDPVPALRGALKPRIKGVHAAILVA-ELPEFLETLNHNKARMFPVTRILMQLMM  245
              G A+ +P P L +AL    K VH ++L A ELP+FL+ L    + +  +T+   Q++M
Sbjct  180  VTGRADYNPAPDLASALATP-KKVHFPFLTANELPHFLNDLAGYTGSI--ITKTATQIIM  236

Query  246  LTFVRTSELTETPWSEVDLKNEQWVIPWQRMKMGKRKINPRKVDHHVFLPKQGWAFLREL  305
            LT VRT EL  + W ++D+    W IP + MKM +  I P  + ++V++      ++++L
Sbjct  237  LTGVRTQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVP--LSEQVIM------LFKQL  288

Query  306  RTYTGGNQWLFPNQRDPKKPISNGAILAALKRLGYAGKHTGHGFRSLAKGILKTLGNDIS  365
               +  +  +F  + DP+KPIS+ +I  A+  LGY G+ TGHGFR     IL   G + +
Sbjct  289  EPISKHHPLVFIGRNDPRKPISKESINQAIELLGYKGRLTGHGFRHTMSTILHEQGFNSA  348

Query  366  NIERQLAHSSGEAYGASYDRESFLEERKIMMQGYADYIDAVSRK  409
             IE QLAH   ++   +Y++  +L+ R+ MMQ YADYID++S +
Sbjct  349  WIEMQLAHVDKNSIRDTYNHALYLDGRREMMQWYADYIDSLSSR  392

473) SSON53_18230 in NC_016822


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  257 bits (962),  Expect = 4e-70, Method: Compositional matrix adjust.
 Identities = 138/329 (42%), Positives = 224/329 (69%), Gaps = 15/329 (4%)

Query  1    MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS  60
            MALTD K+++AKP DK+YKL+DG+GM+LL++ NGS+YWR++YR+ GKEK L++GVYP+V+
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQL--SFEHIARRWHA-SNKQWAQSHS  117
            L++AR KR EARKL++ G DP E K+  K+  ++ L  +FE IAR WH     +W+    
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  118  NKVLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQ  177
            + ++ ++E ++FP+IG+R I+ ++   LL ++R  E +   E   +++QR + V RYA+ 
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  178  SGIIRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFI  237
            +G   YNPA D+A+AL+T K+ H P L  + LP++L+ +++Y G  +T+ A  + +L  +
Sbjct  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV  240

Query  238  RSSELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQAVAILTEL  297
            R+ ELR+ARW +ID++  +W IPAE              KM+ PH+VPLS Q + ++ +L
Sbjct  241  RTQELRFARWEDIDFETKLWEIPAE------------VMKMKRPHIVPLSEQVIMLFKQL  288

Query  298  QTWAGENGLIFTGAHDPRKPISENVMNAS  326
            +  + ++ L+F G +DPRKPIS + +N +
Sbjct  289  EPISKHHPLVFIGRNDPRKPISKESINQA  317

474) GM21_0997 in NC_012918


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  257 bits (962),  Expect = 6e-70, Method: Compositional matrix adjust.
 Identities = 168/405 (42%), Positives = 265/405 (66%), Gaps = 14/405 (3%)

Query  6    LPLTDSQVTRAKSQAKEAKLYDGGGLYLLISAIKLDSSGKQLPPTKLWRFKYRFAGKEKL  65
            ++LTD +V  AK++ K  KL DGGG+YLLI++            +K WR KYRFAGKEK+
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINT----------NGSKYWRMKYRFAGKEKM  50

Query  66   AAFGAYPSVSLSEARKRREEAKQLLVQGVDPNEEKKARKAALSSHCQNTFEAVAREWHSR  125
             ++G YP V+L++AR +R EA++LL  G DP E KK  K A     +NTFEA+AREWH  
Sbjct  51   LSIGVYPDVTLADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQL  110

Query  126  FKGNWSEKHAEQIMKRLEQEVFPFLGARPISEIKAPDLLLVLRQIEAR-TLETAHRVRIA  184
              + WS +  ++I+  +E+++FP++G RPI+EIK+  LL  LR++E R +LE  ++VR  
Sbjct  111  KADRWSLRYRDEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQR  170

Query  185  CGQVFRYAVATGRAEHDPVSMLRGALPPIKNNHFAAPVMPSDVGPLLKAIDGFKGSPIVK  244
            CG+VFRYA+ TGRA+ +P + L +AL+  K+ HF+  + ++++  +L+ + G+ GS I K
Sbjct  171  CGEVFRYAIVTGRADYNPAPDLASALATPKKVHFPF-LTANELPHFLNDLAGYTGSIITK  229

Query  245  AAMQLAPHLFVRPGELRQAEWSEVDLQAGEWNIPAAKMKMGQPHLVPLSRqalqilqdlq  304
            +A Q+     VR  ELR A W ++D+++  W+IPA  MKM +PH+VPLS Q + ++++L+
Sbjct  230  TATQIIMLTGVRTQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLE  289

Query  305  aiTGHGRYVFPCHRSRLRCMSENAVNAGLRRLGFEKHEITGHGFRAMARTILDEVLHFRP  364
            +I+ H   VF  +    + +S +++N ++  LG+ K  +TGHGFR    TIL+E   F +
Sbjct  290  PISKHHPLVFIGRNDPRKPISKESINQAIELLGY-KGRLTGHGFRHTMSTILHEQ-GFNS  347

Query  365  DIIEHQLAHAVKDPLGRAYNRTSHLAERRRMMQQWSEFLDQLKIK  409
              IE QLAH  K+++  +YN++  L  RR MMQ  ++++D L  +
Sbjct  348  AWIEMQLAHVDKNSIRDTYNHALYLDGRREMMQWYADYIDSLSSR  392

475) Fraau_1988 in NC_017033


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  256 bits (956),  Expect = 1e-69, Method: Compositional matrix adjust.
 Identities = 172/405 (43%), Positives = 267/405 (66%), Gaps = 25/405 (6%)

Query  1    MPLTDTAARKAAPRDKSYRLPDGGGMYLEVMPNGSRYWRLKYRFGGKEKRLALGVYPGIS  60
            M+LTD   + A P+DK+Y+L+DGGGMYL +  NGS+YWR+KYRF+GKEK L++GVYP+++
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   ladarkrredarrlladGIDPGAARKEAKQEATAEAGGAVTFEQVARQWLARQDVAEVTA  120
            LADAR +R +AR+LLA G DPG A+KE K   + + +   TFE +AR+W       ++ A
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEK--IAQQMSLKNTFEAIAREW------HQLKA  112

Query  121  NKNQW-------LLEEY---LFPSIGQRPIADITPRELLAALRETEDKGLLETARRSKIK  170
            ++  W       +++ +   +FP IG+RPIA+I P  LL ALR  E +G LE  R+ + +
Sbjct  113  DR--WSLRYRDEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQR  170

Query  171  AGQVFRYAIIEGLCEADPMASLRGALKTTRNRHHAAITDPVQIGGLMRAMDGFAGTFTVR  230
             G+VFRYAI+ G  + +P + L +AL T ++ H + +T   ++  ++  + G++G++  +
Sbjct  171  CGEVFRYAIVTGRADYNPAPDLASALATPKKVHFPFLTAN-ELPHFLNDLAGYTGSIITK  229

Query  231  CALLLSALLFVRPGELRKAEWAEMDLDGAMWRIPGEKMKMGAPHLVPLSEQALAILRDLH  290
             A  +  L  VR  ELR A W ++D++  +W IP+E MKM  PH+VPLSEQ + ++++L+
Sbjct  230  TATQIIMLTGVRTQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLE  289

Query  291  GLTGHARYVFSGLRTDSRPMSENTVNTALRALGYDKATMTAHGFRSMAATRLNEMGWNAD  350
             ++ H   VF G     +P+S +++N A+  LGY K+ +T+HGFR   +T L+E G N+ 
Sbjct  290  PISKHHPLVFIGRNDPRKPISKESINQAIELLGY-KGRLTGHGFRHTMSTILHEQGFNSA  348

Query  351  AIERQLAHAESNKVRDAYTSQAQYLPERQKMMQAW-ADYLDSLKA  394
             IE QLAH + N +RD+Y ++A YL  R+ MMQ W ADY+DSL +
Sbjct  349  WIEMQLAHVDKNSIRDTY-NHALYLDGRREMMQ-WYADYIDSLSS  391

476) RCFBP_11461 in NC_014307


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  256 bits (958),  Expect = 1e-69, Method: Compositional matrix adjust.
 Identities = 170/396 (43%), Positives = 263/396 (67%), Gaps = 8/396 (2%)

Query  1    MALTDTAIRNAKAADKPIKLFDGGGLFLHITPAGQRYWRLKYRFAGKEKLLAIGVYPEVG  60
            MALTD  ++ AK+ DKP KL DGGG++L I   G +YWR+KYRFAGKEK+L+IGVYP+V 
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   lkeardrreeakrllGEGVDPSVERKVRKVATVERAANSFEAVAREWHAKYAPGWSESNA  120
            L +AR++R EA++LL+ G DP+  +K  K+A      N+FEA+AREWH   A  WS    
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  121  KKVLARLENDVFPWLGGRPIAELKAPELLGVARRVESRGALDTAHRVLQTCGQIFRYAVA  180
              ++  +E+D+FP +G RPIAE+K+  LL   R++E RGAL+  ++V Q CG++FRYA+ 
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  181  TGRAERDPSGDLRGALPPAKGKHYAAPTDPREVAGLLRMFDGFTGTFVVKCALLLAPMLF  240
            TGRA+ +P+ DL +AL+ +K  H++  T + E++ +L  + G+TG+++ K A  +  +  
Sbjct  181  TGRADYNPAPDLASALATPKKVHFPFLT-ANELPHFLNDLAGYTGSIITKTATQIIMLTG  239

Query  241  VRPGELRAAEWADIDLDAGEWRFVSS--KRDVAHIVPLSTQAVAILRDLHALTGHGRYLF  298
            VR  ELR A W DID+++  W + +   K   +HIVPLS Q + ++++L++++ H   +F
Sbjct  240  VRTQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHPLVF  299

Query  299  PGARDKSKPMSEAAINAALKRMGIDTQKEFTGHGVRPIARTILREVLGFEAEVIELQLAH  358
             G  D  KP+S  +IN A+  +G   +  +TGHG R    TIL+E  GF++  IE+QLAH
Sbjct  300  IGRNDPRKPISKESINQAIELLGYKGR--LTGHGFRHTMSTILHEQ-GFNSAWIEMQLAH  356

Query  359  RKKDPNGAAYDRVAFLAVRKQMMQAW-ADYLDEIKA  393
              K++   +Y++  +L  R++MMQ W ADY+D + +
Sbjct  357  VDKNSIRDTYNHALYLDGRREMMQ-WYADYIDSLSS  391

477) SG1638 in NC_007712


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  256 bits (955),  Expect = 2e-69, Method: Compositional matrix adjust.
 Identities = 178/409 (44%), Positives = 263/409 (65%), Gaps = 27/409 (6%)

Query  1    MKLNPRQVQTAKAKEKSYKLSDGGGMYLEVTPRGSKYWRMKYHRPSDRKEDKLSFGVYPA  60
            M L   +V+TAK+K+K+YKL+DGGGMYL +   GSKYWRMKY+ ++  KE  LS+GVYP 
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAG--KEKMLSIGVYPD  58

Query  61   ITlaearakrdeakkllakGLDPKKVQKKEHAENNGEF--TFESIARKWHS-NNRRWENV  117
            +TLA+AR KR EA+KLLA G DP   +K E   ++  +  TFE+IAR WH  +  RW   
Sbjct  59   VTLADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLR  118

Query  118  TRNLILNSLEKYVFPIIGKNDIRQLKTRHLLAVVRAVEENGKHEVAQRIQQRITSIMRYA  177
             R+ I++++EK +FP IGK  I ++K   LL  +R +E  G  E  ++++QR   + RYA
Sbjct  119  YRDEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYA  178

Query  178  VQNEIIETNPALDMAGALIPPKSVHHPALAPIMLPQFFARLTSYKGRKITRIAVELNLLT  237
            +     + NPA D+A+AL  PK VH P L++  LP+F+  L++Y G  IT+ A ++ +LT
Sbjct  179  IVTGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLT  238

Query  238  FVRSSELRFARWKEIDFEHALWEIPAKREPIAGVRYSERGMKMKSSHLVPLSKQAIELLK  297
             VR+ ELRFARW +IDFE  LWEIPA              MKMK +H+VPLS Q I L+K
Sbjct  239  GVRTQELRFARWEDIDFETKLWEIPAE------------VMKMKRPHIVPLSEQVIMLFK  286

Query  298  QLKVQRGDEAHIFPGDHDIKGVMSENTVNKALRVMGYDTKTEICGHGFRTMARGAMGESG  357
            QL     +++ +F G +D +  +S +++N+A+ ++GY  K  + GHGFR      + E G
Sbjct  287  QLEPISKHHPLVFIGRNDPRKPISKESINQAIELLGY--KGRLTGHGFRHTMSTILHEQG  344

Query  358  L---WADDVIELQMSHIERNGVKAAYLHTTKHLEERRLMMQWWADYLDA  403
            +   W    IE+Q++H+++N+++ +Y H+   L+ RR MMQW ADY+D+
Sbjct  345  FNSAW----IEMQLAHVDKNSIRDTYNHAL-YLDGRREMMQWYADYIDS  388

478) Acife_3075 in NC_015942


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  256 bits (956),  Expect = 2e-69, Method: Compositional matrix adjust.
 Identities = 165/388 (43%), Positives = 254/388 (66%), Gaps = 3/388 (0%)

Query  2    LTDIKIRQAKATGKTCKLTDGRGLYLEVTPTGAKHWRYRYRIAGKENVYAMGNYPEISLQ  61
            LTDIK++ AK+ +K  KL+DG G+YL +   G+K WR +YR+AGKE++ ++G YP+++L 
Sbjct  3    LTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVTLA  62

Query  62   EARKAREDARDLVKQGVHPAHIRRKNQGEKEAGNAITFKKVADEWLVKKQPHWSPGYYAR  121
            +AR  R +AR L+  G +P++ ++ ++  ++ +   TF  +A EW   K  +WS  Y   
Sbjct  63   DAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYRDE  122

Query  122  IKDGLEKNAYPAIGKMAIRSINSADILNIMREMEARGAETYAMHLRYWCSAVFCYAVVTL  181
            I D +EK+ +P IGK +I  I++  +L+ +R ME RGA      +R +C+ VF YA+VT 
Sbjct  123  IIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIVTG  182

Query  182  RADSDPAAALKGAIIRPKISHSKAMNAADIKDFLRRLDGYGGNlttiiilrlllylFVRT  241
            RAD +PA+ L +A+  PK  H   + A ++ +FL  L GY G++ T    ++++   VRT
Sbjct  183  RADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGVRT  242

Query  242  VELRKARWEEFNLEAGEWLIPAERMKKRRAHLVPLPHQAIELLKKLNAITGSGEWLFNNS  301
             ELR ARWE++++E+  W IPAE MK +R+H+VPL++Q I L+K+L++I+     +F   
Sbjct  243  QELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHPLVFIGR  302

Query  302  RTPGERIGFTTVNRALEYMGYPSGCWTGHDFRATASTRLHELGFASMVIERQLAHVEGNA  361
              P   I+  ++N+A+E +GY  G  TGH+FR T ST LHE GF S  IE QLAHV+ N+
Sbjct  303  NDPRKPISKESINQAIELLGY-KGRLTGHGFRHTMSTILHEQGFNSAWIEMQLAHVDKNS  361

Query  362  TKAAYNHAEYLQDRRIMMQAW-ADWIDA  388
             + +YNHA YL++RR MMQ W AD ID+
Sbjct  362  IRDTYNHALYLDGRREMMQ-WYADYIDS  388

479) intB in NC_013892


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  256 bits (955),  Expect = 2e-69, Method: Compositional matrix adjust.
 Identities = 170/409 (42%), Positives = 258/409 (64%), Gaps = 27/409 (6%)

Query  1    MKLNARQIETAKPKEKTYKLADGGGLYLEITSRGSKYWHMKYRRPTDKKEDRLAFGVYPI  60
            M L   ++ TAKPK+K YKLADGGG+YL I + GSKYW+MKYR +   KE  L++GVYP 
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAG--KEKMLSIGVYPD  58

Query  61   VSLadarakrdeakkLIAQGSDPKAEKRGTQLESKGA--PSFEQVAREWHA-SNKRWSED  117
            V+LADAR KR EA+KL+A G+DP   K+  ++  + +   +FE +AREWH     RWS  
Sbjct  59   VTLADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLR  118

Query  118  HSNRILRSLEHYIFPHIGKLDISTVRTSQLLAPIKSVDADGKHDIAQRLQQRVTSIMRYA  177
              + I+ ++E  IFP IGK  I+ ++  +LL +++ ++  G  +  ++++QR   + RYA
Sbjct  119  YRDEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYA  178

Query  178  VQNDILESNPANDMSGALSTVKAKHHPALPHERLPEFLTRLSHYRGRLITQIAVELTLLT  237
            +  +  + NPA D+++AL+T K  H P L  + LP+FL  L+ Y G +IT+ A ++ +LT
Sbjct  179  IVTGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLT  238

Query  238  FVRSSELRFARWEELDLENAVWKIPATRKPIEGVKFSERGMKMKTEHIVPLSRQAVSLFK  297
             VR+ ELRFARWE++D+E  +W IPA              MKMK  HIVPLS Q + LFK
Sbjct  239  GVRTQELRFARWEDIDFETKLWEIPAE------------VMKMKRPHIVPLSEQVIMLFK  286

Query  298  ILQGLSGECEVMFPHDHNPAKVMSESTVNNALRVMGYDTKTEVWGHGFRTMARGAMGESG  357
             L+ +S +  ++F   ++P K +S  ++N+A+ ++GY  +    GHGFR      + E G
Sbjct  287  QLEPISKHHPLVFIGRNDPRKPISKESINQAIELLGYKGRLT--GHGFRHTMSTILHEQG  344

Query  358  L---WNDDAIERQLSHVERKNVRAAYIHTSKHLDERRLMVQWWADYLDA  403
            +   W    IE QL+HV+++++R +Y H+   LD RR M+QW ADY+D+
Sbjct  345  FNSAW----IEMQLAHVDKNSIRDTYNHAL-YLDGRREMMQWYADYIDS  388

480) ESA_00630 in NC_009778


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  255 bits (952),  Expect = 3e-69, Method: Compositional matrix adjust.
 Identities = 155/387 (41%), Positives = 254/387 (66%), Gaps = 2/387 (0%)

Query  7    PLTNNEILKAKPREKDFTLHDGDGLFLLVKTSGKKLWRFRYQRPASSSRTNLSLGSYPAL  66
            +LT+  +  AKP++K + L DG+G++LL++T+G K WR +Y+ ++      LS+G YP +
Sbjct  2    ALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKM--LSIGVYPDV  59

Query  67   TLAAARQIRDQHLTLLAQGIDPqqqqeqvseqrqieLDSIFTTVATNWFQLKSKSVTADY  126
            TLA AR+ R +   LLA G DP + + +    +Q+ L + F ++A +W QLK+   +  Y
Sbjct  60   TLADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRY  119

Query  127  AKDIWRSLDKDVFPAIGALPVQEIKARTIIEALGPIKARGALETVRRLVQRINEIMIYAV  186
              +I  +++KD+FP IG  P+ EIK+  ++EAL  +  RGALE +R++ QR  E+  YA+
Sbjct  120  RDEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAI  179

Query  187  NTGLIDANPASGVGMAFEKPKKQNMPTLRPEELPKLMHSLVMSNLSIPTRCLIEWQLLTL  246
             TG  D NPA++++ A+  PKK + P L ++ELP +++ L     SI T+   +  +LT 
Sbjct  180  VTGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTG  239

Query  247  VRPSEASGTRWAEIDLDARLWTIPAERMKAKREHIVPLSPQALEILKVMKPISAHREHVF  306
            VR  E   +RW +ID++++LW IPAE MK KR HIVPLS Q + ++K + PIS H+  VF
Sbjct  240  VRTQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHPLVF  299

Query  307  PSRNNPKQAMNSQTANAALKRIGFGGKLVAHGLRSIASTAMNEAGLNPDVIEAALAHSDK  366
             +RN+P+++++ ++ N A+  +G+ G+L +HG+R   ST ++E G+N+  IE  LAH DK
Sbjct  300  IGRNDPRKPISKESINQAIELLGYKGRLTGHGFRHTMSTILHEQGFNSAWIEMQLAHVDK  359

Query  367  NEVRKAYNRSSYIIQRIELMQWWAHFV  393
            N +R +YN++ Y+  R E+MQW A+++
Sbjct  360  NSIRDTYNHALYLDGRREMMQWYADYI  386

481) SJA_C1-32120 in NC_014006


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  254 bits (949),  Expect = 5e-69, Method: Compositional matrix adjust.
 Identities = 164/406 (41%), Positives = 255/406 (63%), Gaps = 31/406 (7%)

Query  1    MALSAVAIKAAKGRAKPYKLTDGDGLFLYVTPKGGRYWRMNYRYLGKQKTLAFGVWPDTG  60
            MAL+ + +K+AK + KPYKL+DG+G++L +  +G++YWRM+YR+ GK+K L++GV PD  
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   LADAREQRDAARKLLARGEDPAERIKLDRIAATVAASNSFKAVADEWLIKVEREDRSAAT  120
            LADARE+R  ARKLLA G DP+E  K ++IA  ++  N+F A+A EW             
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREW-----------HQ  109

Query  121  MKKLRWLLAF-----------INASIGKRPIASISAQELLVMLRKMEGKGRYETAKRLRS  169
            +K  RW L +           I + IGKRPIA I +  LL  LRKME +G  E  +++R 
Sbjct  110  LKADRWSLRYRDEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQ  169

Query  170  TCSQIFRYAIATARAERDVAADLRGALIAPKPVHRAAITSAPGAGALLRAIESFEGHSNT  229
             C+++FRYAI T+RA+ + A+DL +AL +PK VH  ++ +A     +L  + ++ G   T
Sbjct  170  RCGEVFRYAIVTGRADYNPAPDLASALATPKKVH-FPFLTANELPHFLNDLAGYTGSIIT  228

Query  230  RAALRLLPHVFVRPGELRFAEWADFDLEKAIWTIPPHKTKMRRAHSIPLSKQAIAIIGSI  289
            ++A +++    VR  ELRFA W D+D+E  +W IP++  KM+R+H +PLS Q I ++  +
Sbjct  229  KTATQIIMLTGVRTQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQL  288

Query  290  EHDADYSRFLFPSLRSVDRPMSENTINAALRRMGYAQDEMTGHGFRAMAATLLNEMGL--  347
            E  +    ++F +     +P+S ++IN A+  +GY ++ +TGHGFR   +T+L+E G+  
Sbjct  289  EPISKHHPLVFIGRNDPRKPISKESINQAIELLGY-KGRLTGHGFRHTMSTILHEQGFNS  347

Query  348  -WHPDAIERQLAHCDNNAVRRAYTRGEYWDERVRMMQHWSDHLDFL  392
             W    IE QLAH D+N++R +Y ++ Y D R  MMQ  +D +D L
Sbjct  348  AW----IEMQLAHVDKNSIRDTYNHALYLDGRREMMQWYADYIDSL  389

482) intB in NC_014228


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  254 bits (948),  Expect = 7e-69, Method: Compositional matrix adjust.
 Identities = 171/406 (43%), Positives = 257/406 (64%), Gaps = 21/406 (5%)

Query  1    MKLNARQIETAKPKEKTYKLADGGGLYLEITSRGSKYWRMKYRRPTDKKEDRLAFGVYPV  60
            M L   ++ TAKPK+K YKLADGGG+YL I + GSKYWRMKYR +   KE  L++GVYP 
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAG--KEKMLSIGVYPD  58

Query  61   VSLadarakrdeakkLIAQGSDPKAEKKGAQTESKGA--PSFEQVAREWHA-SNKRWSED  117
            V+LADAR KR EA+KL+A G+DP   KK  +   + +   +FE +AREWH     RWS  
Sbjct  59   VTLADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLR  118

Query  118  HSNRILRSLEHYIFPHIGRLDISTLRTSQLLAPIKSVDADGKHDIAQRLQQRVTSIMRYA  177
              + I+ ++E  IFP IG+  I+ ++  +LL +++ ++  G  +  ++++QR   + RYA
Sbjct  119  YRDEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYA  178

Query  178  VQNDILESNPANDMSGALSTVKAKHHPALPHERLPEFLTRLSHYRGRLITQIAVELTLLT  237
            +  +  + NPA D+++AL+T K  H P L  + LP+FL  L+ Y G +IT+ A ++ +LT
Sbjct  179  IVTGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLT  238

Query  238  FVRSSELRFARWEELDLENAVWKIPATRKPIEGVKFSERGMKMKTEHIVPLSRQAVSLFK  297
             VR+ ELRFARWE++D+E  +W IPA              MKMK  HIVPLS Q + LFK
Sbjct  239  GVRTQELRFARWEDIDFETKLWEIPAE------------VMKMKRPHIVPLSEQVIMLFK  286

Query  298  ILQGLSGECEVMFPHDHNPAKVMSESTVNNALRGMGYDTKTEVCGHGFRTMARGAMGESG  357
             L+ +S +  ++F   ++P K +S  ++N+A+  +GY  K  + GHGFR      + E G
Sbjct  287  QLEPISKHHPLVFIGRNDPRKPISKESINQAIELLGY--KGRLTGHGFRHTMSTILHEQG  344

Query  358  LWNDDAIERQLSHVERKNVRAAYIHTSKHLDERQLMVQWWADYLDA  403
            + N   IE QL+HV+++++R +Y H+   LD R+ M+QW ADY+D+
Sbjct  345  F-NSAWIEMQLAHVDKNSIRDTYNHAL-YLDGRREMMQWYADYIDS  388

483) UMN798_2960 in NC_017046


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  254 bits (947),  Expect = 8e-69, Method: Compositional matrix adjust.
 Identities = 160/387 (42%), Positives = 250/387 (65%), Gaps = 2/387 (0%)

Query  7    PLTNTEVLRAKALEKDLTLHDGDGLFLIVKTSGKKLWRFRYQRPATKQRTMMGLGAFPAL  66
            +LT+  V  AK+ +K   L DG+G++L+++T+G K WR +Y R A K++ M+++G +P +
Sbjct  2    ALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKY-RFAGKEK-MLSIGVYPDV  59

Query  67   SLADARGLRADYLALLANGIDPqiqaevaeeqqqiaLDSIFSTVAANWFQLKSKSVTPDY  126
            +LADAR  R++   LLA G DP          QQ++L + F ++A +W QLK+   +  Y
Sbjct  60   TLADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRY  119

Query  127  AKDIWRSLEKDVFPAIGETPVQQIKARTLVEALEPIKARGALETVRRLVQRINEIMIYAV  186
              +I  ++EKD+FP IG  P+ +IK+  L+EAL  +  RGALE +R++ QR  E+  YA+
Sbjct  120  RDEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAI  179

Query  187  NTGLIDANPASGIGMAFEKPKKQNMPTLRPEELPKLMRSLVMSNLTVPTRCLIEWQLLTL  246
             TG  D NPA++++ A+  PKK + P L ++ELP ++  L     ++ T+   +  +LT 
Sbjct  180  VTGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTG  239

Query  247  VRPSEASGARWAEIDLDKKLWTIPAERMKAKREHIVPLSPQALGILDVMKPISAHREHVF  306
            VR  E   ARW +ID++ KLW IPAE MK KR HIVPLS Q + ++  + PIS H+  VF
Sbjct  240  VRTQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHPLVF  299

Query  307  PSRNDPKQSMNSQTANAALKRIGYGGRLVAHGLRSIASTALNESGFNADVIEAALAHSDK  366
             +RNDP+++++ ++ N A+  +GY GRL +HG+R   ST L+E GFN+  IE  LAH DK
Sbjct  300  IGRNDPRKPISKESINQAIELLGYKGRLTGHGFRHTMSTILHEQGFNSAWIEMQLAHVDK  359

Query  367  NEVRRAYNRSTYLNKRIELMAWWGRFV  393
            N +R +YN++ YL+ R E+M W + ++
Sbjct  360  NSIRDTYNHALYLDGRREMMQWYADYI  386

484) SL1344_2712 in NC_016810


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  254 bits (947),  Expect = 8e-69, Method: Compositional matrix adjust.
 Identities = 160/387 (42%), Positives = 250/387 (65%), Gaps = 2/387 (0%)

Query  7    PLTNTEVLRAKALEKDLTLHDGDGLFLIVKTSGKKLWRFRYQRPATKQRTMMGLGAFPAL  66
            +LT+  V  AK+ +K   L DG+G++L+++T+G K WR +Y R A K++ M+++G +P +
Sbjct  2    ALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKY-RFAGKEK-MLSIGVYPDV  59

Query  67   SLADARGLRADYLALLANGIDPqiqaevaeeqqqiaLDSIFSTVAANWFQLKSKSVTPDY  126
            +LADAR  R++   LLA G DP          QQ++L + F ++A +W QLK+   +  Y
Sbjct  60   TLADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRY  119

Query  127  AKDIWRSLEKDVFPAIGETPVQQIKARTLVEALEPIKARGALETVRRLVQRINEIMIYAV  186
              +I  ++EKD+FP IG  P+ +IK+  L+EAL  +  RGALE +R++ QR  E+  YA+
Sbjct  120  RDEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAI  179

Query  187  NTGLIDANPASGIGMAFEKPKKQNMPTLRPEELPKLMRSLVMSNLTVPTRCLIEWQLLTL  246
             TG  D NPA++++ A+  PKK + P L ++ELP ++  L     ++ T+   +  +LT 
Sbjct  180  VTGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTG  239

Query  247  VRPSEASGARWAEIDLDKKLWTIPAERMKAKREHIVPLSPQALGILDVMKPISAHREHVF  306
            VR  E   ARW +ID++ KLW IPAE MK KR HIVPLS Q + ++  + PIS H+  VF
Sbjct  240  VRTQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHPLVF  299

Query  307  PSRNDPKQSMNSQTANAALKRIGYGGRLVAHGLRSIASTALNESGFNADVIEAALAHSDK  366
             +RNDP+++++ ++ N A+  +GY GRL +HG+R   ST L+E GFN+  IE  LAH DK
Sbjct  300  IGRNDPRKPISKESINQAIELLGYKGRLTGHGFRHTMSTILHEQGFNSAWIEMQLAHVDK  359

Query  367  NEVRRAYNRSTYLNKRIELMAWWGRFV  393
            N +R +YN++ YL+ R E+M W + ++
Sbjct  360  NSIRDTYNHALYLDGRREMMQWYADYI  386

485) STM474_2864 in NC_016857


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  254 bits (947),  Expect = 8e-69, Method: Compositional matrix adjust.
 Identities = 160/387 (42%), Positives = 250/387 (65%), Gaps = 2/387 (0%)

Query  7    PLTNTEVLRAKALEKDLTLHDGDGLFLIVKTSGKKLWRFRYQRPATKQRTMMGLGAFPAL  66
            +LT+  V  AK+ +K   L DG+G++L+++T+G K WR +Y R A K++ M+++G +P +
Sbjct  2    ALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKY-RFAGKEK-MLSIGVYPDV  59

Query  67   SLADARGLRADYLALLANGIDPqiqaevaeeqqqiaLDSIFSTVAANWFQLKSKSVTPDY  126
            +LADAR  R++   LLA G DP          QQ++L + F ++A +W QLK+   +  Y
Sbjct  60   TLADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRY  119

Query  127  AKDIWRSLEKDVFPAIGETPVQQIKARTLVEALEPIKARGALETVRRLVQRINEIMIYAV  186
              +I  ++EKD+FP IG  P+ +IK+  L+EAL  +  RGALE +R++ QR  E+  YA+
Sbjct  120  RDEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAI  179

Query  187  NTGLIDANPASGIGMAFEKPKKQNMPTLRPEELPKLMRSLVMSNLTVPTRCLIEWQLLTL  246
             TG  D NPA++++ A+  PKK + P L ++ELP ++  L     ++ T+   +  +LT 
Sbjct  180  VTGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTG  239

Query  247  VRPSEASGARWAEIDLDKKLWTIPAERMKAKREHIVPLSPQALGILDVMKPISAHREHVF  306
            VR  E   ARW +ID++ KLW IPAE MK KR HIVPLS Q + ++  + PIS H+  VF
Sbjct  240  VRTQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHPLVF  299

Query  307  PSRNDPKQSMNSQTANAALKRIGYGGRLVAHGLRSIASTALNESGFNADVIEAALAHSDK  366
             +RNDP+++++ ++ N A+  +GY GRL +HG+R   ST L+E GFN+  IE  LAH DK
Sbjct  300  IGRNDPRKPISKESINQAIELLGYKGRLTGHGFRHTMSTILHEQGFNSAWIEMQLAHVDK  359

Query  367  NEVRRAYNRSTYLNKRIELMAWWGRFV  393
            N +R +YN++ YL+ R E+M W + ++
Sbjct  360  NSIRDTYNHALYLDGRREMMQWYADYI  386

486) ECA0835 in NC_004547


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  254 bits (947),  Expect = 9e-69, Method: Compositional matrix adjust.
 Identities = 159/388 (41%), Positives = 248/388 (64%), Gaps = 2/388 (0%)

Query  34   PLTHTEVQKAKATDKDLTLHDGDGLFLLVKTTGKKIWRFRYQVPGTSKRTMISLGAYPAL  93
            +LT+  V+ AK+ DK   L DG+G++LL++T G K WR +Y+ +G  K  M+S+G YP +
Sbjct  2    ALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEK--MLSIGVYPDV  59

Query  94   SLADAREVRSEKLAILVKGIDPQARAGEEAEKLQIAQESIFVNVARKWFELKQSHVSADH  153
            +LADARE RSE   +L  G DP     EE    Q++  + F  +AR W +LK  + S   
Sbjct  60   TLADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRY  119

Query  154  AKDIWRSIEKDILPSIENVPIQELKARTLIQVLEPIKARGALETVRRLVQRINEIMIYAV  213
              +I  ++EKDI+P I + PI E+K+  L++ L  +  RGALE +R++ QR  E+  YA+
Sbjct  120  RDEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAI  179

Query  214  NVGLIEANPASGIGNAFERPKKQHMPIIRPEELPKLMRTISMSNLSIPTRCLLEWQLLTL  273
              G  + NPA+++++A+  PKK H P++ ++ELP ++  ++    SI T+   +  +LT 
Sbjct  180  VTGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTG  239

Query  274  IRPAEASATAWSEIDIENKQWCIPAERMKAKRDHIVPLSEQALELLEIMRPISGNRQYVF  333
            +R  E   + W +ID+E K W IPAE MK KR HIVPLSEQ + L+  + PIS ++  VF
Sbjct  240  VRTQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHPLVF  299

Query  334  PSRNDPRKPMNSQTANAALKRIGYSGKLVAHGLRSIASTAMNEAGFNADVIEAALAHSDK  393
             +RNDPRKP++ ++ N A+  +GY G+L +HG+R   ST ++E GFN+  IE  LAH DK
Sbjct  300  IGRNDPRKPISKESINQAIELLGYKGRLTGHGFRHTMSTILHEQGFNSAWIEMQLAHVDK  359

Query  394  NEVRRAYNRSTYLTQRVELLGWWGEFVN  421
            N +R +YN++ YL  R E++ W +++++
Sbjct  360  NSIRDTYNHALYLDGRREMMQWYADYID  387

487) int in NC_006513


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  253 bits (944),  Expect = 1e-68, Method: Compositional matrix adjust.
 Identities = 167/392 (43%), Positives = 252/392 (65%), Gaps = 2/392 (0%)

Query  1    MQLTDKAIRGVKGGAKPVKMADGGGLYLEVTPAGGKLWRYRFRLAGKENVFAIGAYPRVS  60
            M LTD  ++  K   KP K+ADGGG+YL +   G+K WR ++R+AGKE++++IG YP V+
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   LadarkardeardLVKQGFNPSHYRQQAKQAVIDENLNTFAPVADEWYQSKVDSWSKGHR  120
            LADAR  R EAR L+  G +P++ +++ K A      NTF ++A EW Q K D WS   R
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  121  HHVRTILDKDILPRIGKLPIRSITSPLLHDVMKKIVARGATTRAILARQIMGSVFNLAIL  180
            +++   ++KDI+P IGK PI  I +  L + ++K+  RGA  +    RQ  G VF  AI+
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  181  THRADTNPAEPLKRQIARCVTEHHRHLEERDVGDFLRKLSDYTGHATTRIALQLLMLTAV  240
            T RAD NPA  L   +A     H   L   ++ +FL  L++YTG   T+ A Q++MLT+V
Sbjct  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV  240

Query  241  RPGEVCGARWAEFDIDGQNWTIPKERMKTRKPHIVPLSNQAVDLLKELEPITGDTAFLFP  300
            R  E+  ARW ++D++ + W IP E MK ++PHIVPLS+Q + L+K+LEPI+ + +++F 
Sbjct  241  RTQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHPLVFI  300

Query  301  SQGTKTQTMPTQSIRNAVVKLGYADKFSPHGARGTFSTMLNGRGYNSDWIERQLAHDEGN  360
            ++    + ++ +SI +A+  LGY ++++ HG R T ST+L+ +G+NS WIE QLAH + N
Sbjct  301  GRNDPRKPISKESINQAIELLGYKGRLTGHGFRHTMSTILHEQGFNSAWIEMQLAHVDKN  360

Query  361  RVRASYNHMQYLPERRKMLQEW-ADLLDELRT  391
             +R +YNH  YL  RR M+Q W AD +D L +
Sbjct  361  SIRDTYNHALYLDGRREMMQ-WYADYIDSLSS  391

488) EBL_c09420 in NC_017910


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  253 bits (944),  Expect = 1e-68, Method: Compositional matrix adjust.
 Identities = 158/384 (42%), Positives = 252/384 (66%), Gaps = 2/384 (0%)

Query  7    PLTNTEVLRAKALEKDLTLHDGDGLFLIVKTSGKKLWRFRYQRPATKQRTMMGLGAFPAL  66
            +LT+  V  AK+ +K   L DG+G++L+++T+G K WR +Y R A K++ M+++G +P +
Sbjct  2    ALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKY-RFAGKEK-MLSIGVYPDV  59

Query  67   SLADARGLRTDYLALLANGIDPqiqaevaeeaqqiaLDSIFSTVAANWFQLKSKSVTPDY  126
            +LADAR  R++   LLA G DP         AQQ++L + F ++A +W QLK+   +  Y
Sbjct  60   TLADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRY  119

Query  127  AKDIWRSLEKDVFPAIGEIPVQQIKARTLVEALEPIKARGALETVRRLVQRINEIMIYAV  186
              +I  ++EKD+FP IG  P+ +IK+  L+EAL  +  RGALE +R++ QR  E+  YA+
Sbjct  120  RDEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAI  179

Query  187  NTGLIDANPASGVGMAFEKPKKQSMPTLRPEELPKLMRSLIMSNLSVPTRCLIEWQLLTL  246
             TG  D NPA++++ A+  PKK   P L ++ELP ++  L     S+ T+   +  +LT 
Sbjct  180  VTGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTG  239

Query  247  VRPSEASGARWAEIDLDAKLWTIPAERMKANREHVVPLSPQALEILEVMKPISAHREHVF  306
            VR  E   ARW +ID+++KLW IPAE MK +R H+VPLS Q + ++  + PIS H+  VF
Sbjct  240  VRTQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHPLVF  299

Query  307  PSRNDPKQPMNSQTANAALKRIGYGGKLVAHGLRSIASTAMNEAGFNADVIEAALTHSDK  366
             +RNDP++P++ ++ N A+  +GY G+L +HG+R   ST ++E GFN+  IE  L+H DK
Sbjct  300  IGRNDPRKPISKESINQAIELLGYKGRLTGHGFRHTMSTILHEQGFNSAWIEMQLAHVDK  359

Query  367  NEVRRAYNRSTYLEARKELMDWWG  390
            N +R +YN++ YL++R+E+M+W +
Sbjct  360  NSIRDTYNHALYLDGRREMMQWYA  383

489) SPAB_01138 in NC_010102


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  253 bits (946),  Expect = 1e-68, Method: Compositional matrix adjust.
 Identities = 163/407 (41%), Positives = 257/407 (64%), Gaps = 26/407 (6%)

Query  1    MSLSDAKIRSIKPSDKPFKLTDSQGLYLLVNPGGSRLWYLKYRFNRKESRIALGAYPQVS  60
            M+L+D K+++ KP DKP+KL+D+ G+YLL+N  GS+ W +KYRF  KE  +++G YP+V+
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   LSDARQQRDGIRKLLAQNINPAQQRMTEKAAA--SPEKCFEAVAVAWHK-TNKKWSADYA  117
            L+DAR++R   RKLLA   +P++ +  EK A   S  + FEA+A  WH+    +WS  Y 
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  118  ERILASMKNHIFPAIGHMPVTMLKTQHFTALLKVIEDKGFLEVASRTRQQLCNIMRYAVQ  177
            + I+ +  ++IFP IG  P++ +K   +   L+ +E +G LE   + RQ+  ++ RYA+ 
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  178  QGLTENNPAQHLEGVTAPPVKNHYPAlplerlpelferIGDYQQGRQLTRLAVVLTLHLF  237
             G ++ NPA +L +  A P K H+P L  + LP++++ +++Y  G  +T+ A  + +   
Sbjct  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGY-TGSIITKTATQIIMLTG  239

Query  238  IRSSELRFARWSEIDFRHKIWTIPATRETIEKVRFSGRGAKMRTPHIVPLSWQSIAILKQ  297
            +R+ ELRFARW +IDF  K+W IPA               KM+ PHIVPLS Q I ++KQ
Sbjct  240  VRTQELRFARWEDIDFETKLWEIPAE------------VMKMKRPHIVPLSEQVIMLFKQ  287

Query  298  IQEISGHLELVFPGDHNPYKPMSENTINRALRLMGYDTKADVCGHGFRAMACSALVESEL  357
            ++ IS H  LVF G ++P KP+S ++IN+A+ L+GY  K+ + GHGFR    + L E  +
Sbjct  288  LEPISKHHPLVFIGRNDPRKPISKESINQAIELLGY--KGRLTGHGFRHTMSTILHEQGF  345

Query  358  ---WSRDAVERQMSHQERNSVRAAYIHRAEHLDARKAMMQWWSDYLD  401
               W    +E Q++H ++NS+R +Y H A  LD+R+ MMQW +DY+D
Sbjct  346  NSAW----IEMQLAHVDKNSIRDTYNH-ALYLDGRREMMQWYADYID  387

490) Pecwa_0447 in NC_013421


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  253 bits (946),  Expect = 9e-69, Method: Compositional matrix adjust.
 Identities = 170/408 (42%), Positives = 257/408 (63%), Gaps = 24/408 (5%)

Query  1    MALTDVVARTAKPREKAYKLADAHGLYLLVSPNGSKRWYLKYRFEGKESRIAFGAYPLIS  60
            MALTD+  +TAKP++K+YKLAD+ G+YLL++ NGSK W +KYRF GKE  +++G YP ++
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   LAKAREKRDEIRLLLLEGIHPTekreeekeqaqeaL-NTFAKVAQDWHRNISQNRWSETH  119
            LA AREKR E R LL  G +P E + EEK   Q +L NTF  +A++WH ++  +RWS   
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWH-QLKADRWSLRY  119

Query  120  AGRVWRDMERNLLPAIGHRHIADLKTKDLLEPLKAVEQNGHLDLASRLRQRVTDIMRYAV  179
             + +    E++++P IG R IA++K   LLE+L+ +E+ G L+   ++RQR  ++ RYA+
Sbjct  120  RDEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAI  179

Query  180  QNDLIERNPAQDLSGAIAAPKATHRPALKLNKLPDFLARIERHKGrtltrlalkltlCVF  239
              +  + NPA DL++A+A+PK  H P L  N LP+FL  +    G  +T+ A ++ +   
Sbjct  180  VTGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTG  239

Query  240  IRSSELRFARWPEIDFKRAMWTIPAEREAIPGVKHSQRGAKMRSEHLVPLSRQALALLEE  299
            +R+ ELRFARW +IDF   +W IPAE              KM+  H+VPLS Q + L+ +
Sbjct  240  VRTQELRFARWEDIDFETKLWEIPAE------------VMKMKRPHIVPLSEQVIMLFKQ  287

Query  300  IKAISGAHELIFPGDRRPTKPMSENTVNNALRTMGYDTTIEVCGHGFRTMACSALVESG-  358
            + +IS  H L+F G   P KP+S +++N+A+  +GY   +   GHGFR    + L E G 
Sbjct  288  LEPISKHHPLVFIGRNDPRKPISKESINQAIELLGYKGRL--TGHGFRHTMSTILHEQGF  345

Query  359  --QWSRDAVERQMSHQERNGVRAAYIHKAEHLDERRLMLQWWADYLDA  404
               W    +E Q++H ++N++R +Y H A  LD RR M+QW ADY+D+
Sbjct  346  NSAW----IEMQLAHVDKNSIRDTYNH-ALYLDGRREMMQWYADYIDS  388

491) Nmul_A2184 in NC_007614


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  252 bits (941),  Expect = 2e-68, Method: Compositional matrix adjust.
 Identities = 171/394 (44%), Positives = 256/394 (65%), Gaps = 5/394 (1%)

Query  1    MALTDTAIRNTKSADKPLKLTDERGLYLLLKPNGSRWWRFDYRYGGKRKTLSMGVYPDVS  60
            MALTD  ++ +K+ DKP KL+D  G+YLL++ NGS+ WR  YR++GK K LS+GVYPDV+
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   LKDARNRRDEARKLLASDVDPGENRKAVKAAKLEKTTNSFEVITREWYAKFSPTWNESHG  120
            L DAR++R EARKLLA++ DPGE +K  K A+     N+FE I+REW    +  W+    
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  121  eriirrferdifPWIGSKPISEIAAPELLATVRRIESRGAVETAHRALGNCGQVFRYAIA  180
            + II  FE+DIFP IG +PI+EI +  LL ++R++E RGA+E  ++    CG+VFRYAI 
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  181  TARATRDISADLRGALPPVKGEHFAAITEPKQVGALLRAIDGYTGSHVVRCALRLAPLVF  240
            T+RA  + ++DL +AL+  K  HF+ +T ++++  +L  + GYTGS + + A ++  L  
Sbjct  181  TGRADYNPAPDLASALATPKKVHFPFLT-ANELPHFLNDLAGYTGSIITKTATQIIMLTG  239

Query  241  VRPGELRKAEWKDIDLDGGEWRYT--VTKTNTPHIVPLSTQAVEILKELQALTGRSRFVF  298
            VR  ELR A W DID++   W     V K + PHIVPLS Q + ++K+L++++ +  +VF
Sbjct  240  VRTQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHPLVF  299

Query  299  PGARTNGRPMSDNAILAALRRMGIDKEEMSGHGFRAMARTILDEVLGVRPDFIEHQLAHS  358
             G     +P+S ++I  A+  +G  K  ++GHGFR    TIL+E  G  +  IE QLAH 
Sbjct  300  IGRNDPRKPISKESINQAIELLGY-KGRLTGHGFRHTMSTILHEQ-GFNSAWIEMQLAHV  357

Query  359  VRDPNGRAYNRTAHLPERRKMMQQWADYLDKLKA  392
             +++   +YN++  L  RR MMQ  ADY+D L +
Sbjct  358  DKNSIRDTYNHALYLDGRREMMQWYADYIDSLSS  391

492) W5S_0459 in NC_017845


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  252 bits (942),  Expect = 2e-68, Method: Compositional matrix adjust.
 Identities = 172/408 (43%), Positives = 258/408 (64%), Gaps = 24/408 (5%)

Query  1    MALTDVVARTAKPREKAYKLADAHGLYLLVSPNGSKRWYLKYRFEGKESRIAFGAYPLVS  60
            MALTD+  +TAKP++K+YKLAD+ G+YLL++ NGSK W +KYRF GKE  +++G YP V+
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   LAKAREKRDEIRLLLLEGIHPTekreeekeqaqeaL-NTFEKVAQDWHRNISQNRWSETH  119
            LA AREKR E R LL  G +P E + EEK   Q +L NTFE +A++WH ++  +RWS   
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWH-QLKADRWSLRY  119

Query  120  AGRVWRDMERNLLPAIGHRHIADLKTKDLLEPLKVVEQNGHLDLASRLRQRVTDIMRYAV  179
             + +    E++++P IG R IA++K   LLE+L+ +E+ G L+   ++RQR  ++ RYA+
Sbjct  120  RDEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAI  179

Query  180  QNDLIERNPAQDLSGAIAAPKATHRPALKLNTLPDFLARIERHkgraltrlalkltlCVF  239
              +  + NPA DL++A+A+PK  H P L  N LP+FL  +    G  +T+ A ++ +   
Sbjct  180  VTGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTG  239

Query  240  IRSSELRFARWPEIDFKRAMWTIPAEREAIPGVKHSQRGAKMRSEHLVPLSRQALALLEE  299
            +R+ ELRFARW +IDF   +W IPAE              KM+  H+VPLS Q + L+ +
Sbjct  240  VRTQELRFARWEDIDFETKLWEIPAE------------VMKMKRPHIVPLSEQVIMLFKQ  287

Query  300  IKAISGAHELIFPGDRRPTKPMSENTVNNALRTMGYDTTTEVCGHGFRTMACSALVESG-  358
            + +IS  H L+F G   P KP+S +++N+A+  +GY     + GHGFR    + L E G 
Sbjct  288  LEPISKHHPLVFIGRNDPRKPISKESINQAIELLGYKGR--LTGHGFRHTMSTILHEQGF  345

Query  359  --QWSRDAVERQMSHQERNGVRAAYIHKAEHLDERRLMLQWWADYLDA  404
               W    +E Q++H ++N++R +Y H A  LD RR M+QW ADY+D+
Sbjct  346  NSAW----IEMQLAHVDKNSIRDTYNH-ALYLDGRREMMQWYADYIDS  388

493) CFSAN001992_19740 in NC_020307


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  252 bits (941),  Expect = 2e-68, Method: Compositional matrix adjust.
 Identities = 160/387 (42%), Positives = 253/387 (66%), Gaps = 2/387 (0%)

Query  7    PLTNTEVLRAKALEKDLTLHDGDGLFLIVKTSGKKLWRFRYQRPATKQRTMMGLGAFPAL  66
            +LT+  V  AK+ +K   L DG+G++L+++T+G K WR +Y R A K++ M+++G +P +
Sbjct  2    ALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKY-RFAGKEK-MLSIGVYPDV  59

Query  67   SLADARGLRADYLALLANGIDPqiqaevveeqqqiaLDSIFSTVAANWFQLKSKSVTPDY  126
            +LADAR  R++   LLA G DP          QQ++L + F ++A +W QLK+   +  Y
Sbjct  60   TLADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRY  119

Query  127  AKDIWRSLEKDVFPAIGEIPVQQIKARILVEALEPIKARGALETVRRLVQRINEIMIYAV  186
              +I  ++EKD+FP IG  P+ +IK+  L+EAL  +  RGALE +R++ QR  E+  YA+
Sbjct  120  RDEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAI  179

Query  187  NTGLIDANPASGIGMAFEKPKKQNMPTLRPEELPKLMRSLVMSNLSVPTRCLIEWQLLTL  246
             TG  D NPA++++ A+  PKK + P L ++ELP ++  L     S+ T+   +  +LT 
Sbjct  180  VTGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTG  239

Query  247  VRPSEASGARWAEIDLYAKLWTIPAERMKAKREHIVPLSPQALEILEVMKPISAHREHVF  306
            VR  E   ARW +ID+ +KLW IPAE MK KR HIVPLS Q + ++  + PIS H+  VF
Sbjct  240  VRTQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHPLVF  299

Query  307  PSRNDPKQPMNSQTANAALKRIGYGGKLVAHGLRAIASTAMNEAGLNSDVIEAALAHIEK  366
             +RNDP++P++ ++ N A+  +GY G+L +HG+R   ST ++E G+NS  IE  LAH++K
Sbjct  300  IGRNDPRKPISKESINQAIELLGYKGRLTGHGFRHTMSTILHEQGFNSAWIEMQLAHVDK  359

Query  367  NEVRRAYNRSTYLERRKELMSWWGNFI  393
            N +R +YN++ YL+ R+E+M W +++I
Sbjct  360  NSIRDTYNHALYLDGRREMMQWYADYI  386

494) SNSL254_A2952 in NC_011080


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  252 bits (941),  Expect = 2e-68, Method: Compositional matrix adjust.
 Identities = 160/387 (42%), Positives = 253/387 (66%), Gaps = 2/387 (0%)

Query  7    PLTNTEVLRAKALEKDLTLHDGDGLFLIVKTSGKKLWRFRYQRPATKQRTMMGLGAFPAL  66
            +LT+  V  AK+ +K   L DG+G++L+++T+G K WR +Y R A K++ M+++G +P +
Sbjct  2    ALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKY-RFAGKEK-MLSIGVYPDV  59

Query  67   SLADARGLRADYLALLANGIDPqiqaevveeqqqiaLDSIFSTVAANWFQLKSKSVTPDY  126
            +LADAR  R++   LLA G DP          QQ++L + F ++A +W QLK+   +  Y
Sbjct  60   TLADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRY  119

Query  127  AKDIWRSLEKDVFPAIGEIPVQQIKARILVEALEPIKARGALETVRRLVQRINEIMIYAV  186
              +I  ++EKD+FP IG  P+ +IK+  L+EAL  +  RGALE +R++ QR  E+  YA+
Sbjct  120  RDEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAI  179

Query  187  NTGLIDANPASGIGMAFEKPKKQNMPTLRPEELPKLMRSLVMSNLSVPTRCLIEWQLLTL  246
             TG  D NPA++++ A+  PKK + P L ++ELP ++  L     S+ T+   +  +LT 
Sbjct  180  VTGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTG  239

Query  247  VRPSEASGARWAEIDLYAKLWTIPAERMKAKREHIVPLSPQALEILEVMKPISAHREHVF  306
            VR  E   ARW +ID+ +KLW IPAE MK KR HIVPLS Q + ++  + PIS H+  VF
Sbjct  240  VRTQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHPLVF  299

Query  307  PSRNDPKQPMNSQTANAALKRIGYGGKLVAHGLRAIASTAMNEAGLNSDVIEAALAHIEK  366
             +RNDP++P++ ++ N A+  +GY G+L +HG+R   ST ++E G+NS  IE  LAH++K
Sbjct  300  IGRNDPRKPISKESINQAIELLGYKGRLTGHGFRHTMSTILHEQGFNSAWIEMQLAHVDK  359

Query  367  NEVRRAYNRSTYLERRKELMSWWGNFI  393
            N +R +YN++ YL+ R+E+M W +++I
Sbjct  360  NSIRDTYNHALYLDGRREMMQWYADYI  386

495) SN31241_38450 in NC_021902


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  252 bits (941),  Expect = 2e-68, Method: Compositional matrix adjust.
 Identities = 160/387 (42%), Positives = 253/387 (66%), Gaps = 2/387 (0%)

Query  7    PLTNTEVLRAKALEKDLTLHDGDGLFLIVKTSGKKLWRFRYQRPATKQRTMMGLGAFPAL  66
            +LT+  V  AK+ +K   L DG+G++L+++T+G K WR +Y R A K++ M+++G +P +
Sbjct  2    ALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKY-RFAGKEK-MLSIGVYPDV  59

Query  67   SLADARGLRADYLALLANGIDPqiqaevveeqqqiaLDSIFSTVAANWFQLKSKSVTPDY  126
            +LADAR  R++   LLA G DP          QQ++L + F ++A +W QLK+   +  Y
Sbjct  60   TLADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRY  119

Query  127  AKDIWRSLEKDVFPAIGEIPVQQIKARILVEALEPIKARGALETVRRLVQRINEIMIYAV  186
              +I  ++EKD+FP IG  P+ +IK+  L+EAL  +  RGALE +R++ QR  E+  YA+
Sbjct  120  RDEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAI  179

Query  187  NTGLIDANPASGIGMAFEKPKKQNMPTLRPEELPKLMRSLVMSNLSVPTRCLIEWQLLTL  246
             TG  D NPA++++ A+  PKK + P L ++ELP ++  L     S+ T+   +  +LT 
Sbjct  180  VTGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTG  239

Query  247  VRPSEASGARWAEIDLYAKLWTIPAERMKAKREHIVPLSPQALEILEVMKPISAHREHVF  306
            VR  E   ARW +ID+ +KLW IPAE MK KR HIVPLS Q + ++  + PIS H+  VF
Sbjct  240  VRTQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHPLVF  299

Query  307  PSRNDPKQPMNSQTANAALKRIGYGGKLVAHGLRAIASTAMNEAGLNSDVIEAALAHIEK  366
             +RNDP++P++ ++ N A+  +GY G+L +HG+R   ST ++E G+NS  IE  LAH++K
Sbjct  300  IGRNDPRKPISKESINQAIELLGYKGRLTGHGFRHTMSTILHEQGFNSAWIEMQLAHVDK  359

Query  367  NEVRRAYNRSTYLERRKELMSWWGNFI  393
            N +R +YN++ YL+ R+E+M W +++I
Sbjct  360  NSIRDTYNHALYLDGRREMMQWYADYI  386

496) A79E_1796 in NC_018522


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  252 bits (940),  Expect = 3e-68, Method: Compositional matrix adjust.
 Identities = 166/414 (41%), Positives = 260/414 (63%), Gaps = 31/414 (7%)

Query  1    MSLTDIKAKNAKPLEKEYKLTDGFGMFLRVTPKGSKYWQMAYRFEGKQKLFSIGVYPAVS  60
            M+LTDIK K AKP +K YKL+DG GM+L +  +GSKYW+M YRF GK+K++SIGVYP V+
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   LSDARQRRDEARRLLAQGIDP-NAKKQAEVKELKAKRDNTRSFRTVAKAWFSTKT-KWSD  118
            L+DAR++R EAR+LLA G DP +AKK+  + +  + ++   +F ++A+ W   K+ +WS 
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKN---TFEAIAREWHQLKADRWSL  117

Query  119  DYGDAVWKRLETYVFPAIGDKDVAELDTGDLLVPVKKVEALGYLEVAMRTQQYITAILRH  178
             Y D +   +E  +FP IG + +AE+    LL +++K+E  G LE   + +Q    ++R 
Sbjct  118  RYRDEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRY  177

Query  179  AVQQKLIRHNPAYDMEGAVQKPQTEHRPALELEEIPQLLNKIAEYKGRRLTILAIQLNLM  238
            A+       NPA D+ +A+  P+  H P L  +E+P++LN +A Y G  +T  A Q+ ++
Sbjct  178  AIVTGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIML  237

Query  239  IFIRSSELRFARWSEIDFKSKLWVIPEQREAIENVKHSTRGAKMKRKHFVPLCKQAIRIL  298
              +R+ ELRFARW +IDF +KLW IP +              KMKR H+VPL  Q I ++
Sbjct  238  TGVRTQELRFARWEDIDFETKLWEIPAE------------VMKMKRPHIVPLSEQVIMLF  285

Query  299  KEIRQLTYEEGHDDGLIFTGCYDSFKPMSENTINKALRNMGYNTKQDICGHGFRTLACSA  358
            K++  ++     ++ L+F G  D+ KP+S ++IN+A+  +GY+ +  + GHGFR    + 
Sbjct  286  KQLEPIS----KHHPLVFIGRNDPRKPISKESINQAIELLGYKGR--LTGHGFRHTMSTI  339

Query  359  LIESGL---WSEDAVELQMSHKESNSVRAAYTHKAKHLEQRRLMLQWWADYLDA  409
            L E G+   W    +E+Q++H + NS+R +Y H A  L+ RR M+QW ADY+D+
Sbjct  340  LHEQGFNSAW----IEMQLAHVDKNSIRDTYNH-ALYLDGRREMMQWYADYIDS  388

497) Fraau_3064 in NC_017033


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  251 bits (939),  Expect = 3e-68, Method: Compositional matrix adjust.
 Identities = 162/392 (42%), Positives = 263/392 (68%), Gaps = 9/392 (2%)

Query  8    LTALAIKAAEP-GKHF---DGGGMFLHITTKG-RYWRLKYRVAGKEKLLALGVYPEVSLa  62
            LT + +K+A P +K +   DGGGM+L I T+G +YWR+KYR AGKEK+L++GVYP+V+LA
Sbjct  3    LTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVTLA  62

Query  63   earkrrdearrVIGEGGDPSAIRRTTKVTAVLATANTFQAVAEEWLAQHKARMAPATYNK  122
            +AR +R EAR++++ GGDP+  ++  K++  ++  NTF+A+A EW      R +    + 
Sbjct  63   DAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYRDE  122

Query  123  AVWMLGDLVYPWLGRRPISDIEAPELLAVLRRIEARGAHTTAHRTKQRCGQVFRYAIATG  182
             +  +   ++P +G+RPI++I +  LL  LR++E RGA    ++ +QRCG+VFRYAI TG
Sbjct  123  IIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIVTG  182

Query  183  RAKRDPSADLRGALAPLNPTSRAAITDPLRVGELLRAIDGYSGTFPVICALRLAPMLFVR  242
            RA  +P++DL +ALA  +    + +T    + ++L  + GY+G++    A ++  +  VR
Sbjct  183  RADYNPAPDLASALATPKKVHFPFLTAN-ELPHFLNDLAGYTGSIITKTATQIIMLTGVR  241

Query  243  PGELRHAEWAEFDLDQSLWRIPAEKMKMRDEHLVPLPDQALAILRDLLPLTGPDGFLFPG  302
              ELR A W ++D++  LW IPAE MKM+  H+VPL++Q + ++++L P++  + ++F G
Sbjct  242  TQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHPLVFIG  301

Query  303  ERSASRPMSENTVNAALRRLGYDKDTMTGHGFRAMASTRLNELGWSPDVIERQLAHAERN  362
               + +P+S +++N A+  LGY K+ +TGHGFR   ST L+E G ++  IE QLAH ++N
Sbjct  302  RNDPRKPISKESINQAIELLGY-KGRLTGHGFRHTMSTILHEQGFNSAWIEMQLAHVDKN  360

Query  363  KVRAAYNRAQYLPERQRMMQAW-ADYLDSLKA  393
             +R +YN+A YL  R+ MMQ W ADY+DSL +
Sbjct  361  SIRDTYNHALYLDGRREMMQ-WYADYIDSLSS  391

498) W5S_0850 in NC_017845


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  251 bits (939),  Expect = 3e-68, Method: Compositional matrix adjust.
 Identities = 156/387 (41%), Positives = 247/387 (64%), Gaps = 2/387 (0%)

Query  7    PLTHTEVQKAKATDKDLTLHDGNGLFLLVKTTGKKLWRFRYQKPTTGQRTMIGFGAYPAL  66
            +LT+  V+ AK+ DK   L DG G++LL++T G K WR +Y+   +G+  M+++G YP +
Sbjct  2    ALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYR--FAGKEKMLSIGVYPDV  59

Query  67   SLADARAMRDEKLSLLAKGIDPQekaakeeeeakIAVESIFLNVARSWFALKQTNVSADH  126
            +LADAR  R E   LLA G DP E    E    ++++ + F  +AR W  LK    S   
Sbjct  60   TLADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRY  119

Query  127  AKDIWRSLEKDVLPAIENIPVQDIKARTLIQALEPIKARGALETVRRLVQRINEIMVYAV  186
              +I  ++EKD++P I + P+ +IK+  L++AL  +  RGALE +R++ QR  E+  YA+
Sbjct  120  RDEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAI  179

Query  187  NTGLIDANPASGIGMAFERPKKQHMPTIRPEELPKLMHTIAMSNLSIPTRCLLEWQLLTL  246
             TG  D NPA++++ A+  PKK H P + ++ELP +++ +A    SI T+   +  +LT 
Sbjct  180  VTGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTG  239

Query  247  IRPAEASATAWAEIDMEKRTWSIPAERMKAKRDHIVPLSDQALELLDIMRPISGNREHVF  306
            +R  E   + W +ID E + W IPAE MK KR HIVPLS+Q + L+  + PIS ++  VF
Sbjct  240  VRTQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHPLVF  299

Query  307  PSRNDPKKPMNSQTANAALKRIGYGGKLVAHGLRSIASTAMNEAGFNPDVIEAALAHCDK  366
             +RNDP+KP++ ++ N A+  +GY G+L +HG+R   ST ++E GFN+  IE  LAH DK
Sbjct  300  IGRNDPRKPISKESINQAIELLGYKGRLTGHGFRHTMSTILHEQGFNSAWIEMQLAHVDK  359

Query  367  NEVRRAYNRSTYLEQRKELMDWWGNFV  393
            N +R +YN++ YL+ R+E+M+W ++++
Sbjct  360  NSIRDTYNHALYLDGRREMMQWYADYI  386

499) intB in NC_014228


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  251 bits (939),  Expect = 4e-68, Method: Compositional matrix adjust.
 Identities = 168/406 (42%), Positives = 256/406 (64%), Gaps = 21/406 (5%)

Query  1    MKLNARQIEAAEPKEKTYKLADGGGLYLEITSRGSKYWRMKYRRPTDKKEDRLAFGVYPV  60
            M L   ++ +A PK+K YKLADGGG+YL I + GSKYWRMKYR +   KE  L++GVYP 
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAG--KEKMLSIGVYPD  58

Query  61   VSLadarakrdeakkLIAQGADPKAEKKGAQAESKGA--PSFEQVAREWHA-SNKRWSED  117
            V+LADAR KR EA+KL+A G+DP   KK  +   + +   +FE +AREWH     RWS  
Sbjct  59   VTLADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLR  118

Query  118  HSNRILRSLEHYIFPHIGKLDISTLRTSQLLAPIKSVDADGKHDIAQRLQQRVTSIMRYA  177
              + I+ ++E  IFP IGK  I+ ++  +LL +++ ++  G  +  ++++QR   + RYA
Sbjct  119  YRDEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYA  178

Query  178  VQNDILESNPANDMSGALSTVKAKHHPALPHERLPEFLTHLSHYRGRLITQIAVELTLLT  237
            +  +  + NPA D+++AL+T K  H P L  + LP+FL +L+ Y G +IT+ A ++ +LT
Sbjct  179  IVTGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLT  238

Query  238  FVRSSELRFARWEELDLENAVWKIPATRKPIEGVKCSERGMKMKTGHIVPLSRQAVSLFK  297
             VR+ ELRFARWE++D+E  +W IPA              MKMK  HIVPLS Q + LFK
Sbjct  239  GVRTQELRFARWEDIDFETKLWEIPAE------------VMKMKRPHIVPLSEQVIMLFK  286

Query  298  TLQDLSGECEVMFPHNHNLAKVMSESTVNNALRGMGYDTKTDVCGHGFRTMARGAMGESG  357
             L+ +S +  ++F   ++  K +S  ++N+A+  +GY  +  + GHGFR      + E G
Sbjct  287  QLEPISKHHPLVFIGRNDPRKPISKESINQAIELLGYKGR--LTGHGFRHTMSTILHEQG  344

Query  358  LWNDDAIERQLSHVERKNVRAAYIHTSKHLDERQLMVQWWADYLDA  403
            + N   IE QL+HV+++++R +Y H+   LD R+ M+QW ADY+D+
Sbjct  345  F-NSAWIEMQLAHVDKNSIRDTYNHAL-YLDGRREMMQWYADYIDS  388

500) SBO_4174 in NC_007613


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  251 bits (937),  Expect = 5e-68, Method: Compositional matrix adjust.
 Identities = 175/413 (43%), Positives = 264/413 (64%), Gaps = 27/413 (6%)

Query  1    MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT  60
            M L   +V TAKPKDK YK+ADGGG+YL ++++GSKYWRMKYR ++  KE  L++GV P 
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAG--KEKMLSIGVYPD  58

Query  61   VTlaqarakrdqakkllaqGIDPKAEQKEAQAENSGAY--SFETIAREWHA-SNKRWSED  117
            VTLA+AR KR +A+KLLA G DP   +KE +  +  +   +FE+IAREWH     RWS  
Sbjct  59   VTLADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLR  118

Query  118  HRSRVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYA  177
             R  ++  +E  IFP IG   I ++K   LL +++K++  G  +  ++++QR   + RYA
Sbjct  119  YRDEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYA  178

Query  178  VQNDYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLT  237
            +  +  D NPA+D+A+AL+T K  H+P L ++ +P+FL  LA+Y G ++T+ A ++ +LT
Sbjct  179  IVTGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLT  238

Query  238  FVRSSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVQLSRQAMILLN  297
             VR+ ELRFARW+++DF+  LW +PA              MKMK  HIV LS Q ++L++
Sbjct  239  GVRTQELRFARWEDIDFETKLWEIPAE------------VMKMKRPHIVPLSEQVIMLFK  286

Query  298  QLKQISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESG  357
            QL  IS +  L+F G +D+ K +S +++N A+  +GY  K  + GHGFR      L E G
Sbjct  287  QLEPISKHHPLVFIGRNDPRKPISKESINQAIELLGY--KGRLTGHGFRHTMSTILHEQG  344

Query  358  L---WSEDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLQANKGK  407
            +   W    IE QL+H ++N++R +Y H+   LD RR M+QW ADY+++  ++
Sbjct  345  FNSAW----IEMQLAHVDKNSIRDTYNHAL-YLDGRREMMQWYADYIDSLSSR  392

501) BPC006_I1487 in NC_018527


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  251 bits (937),  Expect = 5e-68, Method: Compositional matrix adjust.
 Identities = 164/392 (42%), Positives = 253/392 (65%), Gaps = 14/392 (3%)

Query  1    MKNAKPAAKPYKLTDGGGMYLLVQPNGAKYWRMAYRLHGKQKLLAIGVYPAVGLATARER  60
            +K AKP  KPYKL+DGGGMYLL++ NG+KYWRM YR+ GK+K+L+IGVYP V LA ARE+
Sbjct  8    VKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVTLADAREK  67

Query  61   RDDARKKVAAGIDPSAAKRVEKRVARLAASNTFEAVAHGW---MNERKTVVEIGQY-EKT  116
            R +ARK +AAG DP+ AK+ EK   +++  NTFEA+A+ W     +R ++    +Y +  
Sbjct  68   RSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSL----RYRDEI  123

Query  117  LARFDSDVFPWLGKRPIAEVDAPEILTALKRIDSRGARYTAHRVRSEISRVFRYGIKEGY  176
            +  F+ D+FP +GKRPIAE+ +  +L AL++++ RGA    ++VR   + VFRY+I  G 
Sbjct  124  IDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIVTGR  183

Query  177  CKADPARDLVDAIPPAQTTHFAAITDPAKVAEMLRAFDGFSGTFPVLCALKLAPLLFVRP  236
               +PA DL  A++ ++  HF+ +T +  +++ L  + G++G++    A ++  L  VR 
Sbjct  184  ADYNPAPDLASALATPKKVHFPFLT-ANELPHFLNDLAGYTGSIITKTATQIIMLTGVRT  242

Query  237  GELRQAQWAQFDLDKGEWRYL--VTKTKTEHLVPLSLQAIAILRELHALTGAGRYVFPGA  294
             ELR A+W ++D++   W     V K K  H+VPLS Q I ++++L++++     VF G 
Sbjct  243  QELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHPLVFIGR  302

Query  295  RDRNRPMSEAAINAALRRLGYDTRTEITGHGFRAMARTILHEELEQKPEVIEHQLAHTVP  354
             D  +P+S  +IN A+  LGY  R  +TGHGFR    TILHE+   ++  IE QLAH   
Sbjct  303  NDPRKPISKESINQAIELLGYKGR--LTGHGFRHTMSTILHEQ-GFNSAWIEMQLAHVDK  359

Query  355  DNLGSAYNRTKFIKKRREMMQKWADYLDCLKA  386
            +++  +YN++ ++  RREMMQ  ADY+D L +
Sbjct  360  NSIRDTYNHALYLDGRREMMQWYADYIDSLSS  391

502) ETAE_2742 in NC_013508


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  251 bits (936),  Expect = 6e-68, Method: Compositional matrix adjust.
 Identities = 161/387 (42%), Positives = 250/387 (65%), Gaps = 2/387 (0%)

Query  7    PLTNTEVLRAKALEKDLTLHDGDGLFLIVKTSGKKLWRFRYQRPATKQRTMMGLGAFPAL  66
            +LT+  V  AK+ +K   L DG+G++L+++T+G K WR +Y R A K++ M+++G +P +
Sbjct  2    ALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKY-RFAGKEK-MLSIGVYPDV  59

Query  67   SLADARGLRADYLALLANEIDPqiqaevaeeqqqiaLDSIFSTVAANWFQLKSKSVTPEY  126
            +LADAR  R++   LLA   DP          QQ++L + F ++A +W QLK+   +  Y
Sbjct  60   TLADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRY  119

Query  127  AKDIWRSLEKDVFPAIGELPVQQIKARILVEALEPIKARGALETVRRLVQRINEIMIYAV  186
              +I  ++EKD+FP IG  P+ +IK+  L+EAL  +  RGALE +R++ QR  E+  YA+
Sbjct  120  RDEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAI  179

Query  187  NTGLIDTNPASGVGMAFEKPKKQNMPTLRPEELPKLMRSLVMSNLSVPTRCLIEWQLLTL  246
             TG  D NPA++++ A+  PKK + P L ++ELP ++  L     S+ T+   +  +LT 
Sbjct  180  VTGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTG  239

Query  247  VRPSEASGARWSEIDLDAKLWTIPAERMKAKREHIVPLSTQALDILEVMKPISAHREHVF  306
            VR  E   ARW +ID+++KLW IPAE MK KR HIVPLS Q + ++  + PIS H+  VF
Sbjct  240  VRTQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHPLVF  299

Query  307  PSRNDPKQPMNSQTANAALKRIGYGGKLVAHGLRSIASTSMNEAGFNSDVIEAALAHIDK  366
             +RNDP++P++ ++ N A+  +GY G+L +HG+R   ST ++E GFNS  IE  LAH+DK
Sbjct  300  IGRNDPRKPISKESINQAIELLGYKGRLTGHGFRHTMSTILHEQGFNSAWIEMQLAHVDK  359

Query  367  NEVRRAYNRSTYLQKRIELMSWWGALI  393
            N +R +YN++ YL+ R E+M W +  I
Sbjct  360  NSIRDTYNHALYLDGRREMMQWYADYI  386

503) Dsui_1791 in NC_016616


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  250 bits (933),  Expect = 1e-67, Method: Compositional matrix adjust.
 Identities = 170/394 (44%), Positives = 267/394 (68%), Gaps = 9/394 (2%)

Query  1    MALTELAIKASKPADKPYKVSDERGLFLLVNPNGSKYWRVKYRFLGKEKLLALGVYPEVS  60
            MALT++ +K++KP DKPYK++D  G++LL+N NGSKYWR+KYRF GKEK+L++GVYP+V+
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   LKQarerrddarrllaNGVDPGFHKQATKMAMVANAANSFEAVAREWWAKKSVGWSASYS  120
            L +ARE+R +AR+LLA G DPG  K+  K+A   +  N+FEA+AREW   K+  WS  Y 
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  121  NKVIRLFERDVFPWVGARPIADITAPEMLAVVRRIEARGVIETAHLALRVSGQAFRYAVV  180
            + +I  FE+D+FP +G RPIA+I +  +L  +R++E RG +E  +   +  G+ FRYA+V
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  181  TGRAERSPVGDLRGALPPVKVSHFAAITEPEKVGELLRAIDAFSGTFVVLCALKLAPLFF  240
            TGRA+ +P  DL +AL+  K  HF+ +T  E + ++L  + +++G+++   A ++  L  
Sbjct  181  TGRADYNPAPDLASALATPKKVHFPFLTANE-LPHFLNDLAGYTGSIITKTATQIIMLTG  239

Query  241  VRPGELRHARWRDFDLERGEWRYL--VTKTQTQHLVPLATQAIGILRELYALTGRGDFVF  298
            VR  ELR ARW D+D+E   W     V K +  H+VPL+ Q I ++++L +++ +  +VF
Sbjct  240  VRTQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHPLVF  299

Query  299  PGRDRA-NPMSGATINAALRRMGYNTQTDITGHGFRAMARTILAEELHVKPEVIEHQLAH  357
             GR+ + +P+S  +IN A+  +GY+ +  +TGHGFR    TIL E+   ++  IE QLAH
Sbjct  300  IGRNDPRKPISKESINQAIELLGYKGR--LTGHGFRHTMSTILHEQ-GFNSAWIEMQLAH  356

Query  358  RVPDNLGTAYNRTKFLKERRVMMQEW-ANYLDNL  390
               +++  +YN++ +L  RR MMQ W A+Y+D+L
Sbjct  357  VDKNSIRDTYNHALYLDGRREMMQ-WYADYIDSL  389

504) A464_4477 in NC_021870


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  250 bits (934),  Expect = 1e-67, Method: Compositional matrix adjust.
 Identities = 170/405 (42%), Positives = 261/405 (65%), Gaps = 20/405 (4%)

Query  1    MALTDRAIVHAKPCGKPYKLSDSHGLYLLVNPNGSKRWYIKYRFVNKEKKLALGPYPLLT  60
            MALTD  +  AKP +KPYKL+D+ G+YLL+N NGSK W +KYRF  KEK L++G YP +T
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   LAQARRMREEAQLLLISGIDPSAHRKAERLA--ITPEHTFESVAREWVTSNVN-WSAEHK  117
            LA+AR  R EA+ LL +G DP+  +K E++A  ++  +TFE++AREW   + + WS   +
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  118  KRVLRYFELYVFPTNGSCDITKMKVKNLLVPIKEVEKAGKLDVASRLQQRTACVMRYAVQ  177
              ++  FE  +FP  G   I+ +K  +LL +++ +EK G L+   +++QR + V RYA+ 
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  178  NGIIDHNPASDLTGAVSTPKVRHHPALDLNLIPDFLERIDDYKGRqltqlavklalllFI  237
             G  D NPA+DL++A++TPK  H P L  N +P+FL+ + +Y G  +T+ A ++ +L  +
Sbjct  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV  240

Query  238  RSSELRFARWDEIDLRNAMWTIPAEREPIPGVKYSVRGAKMHSPHLVPLSRQAIELLHEV  297
            R+ ELRFARW++ID+   +W IPAE              KM  PH+VPLS Q I L+ ++
Sbjct  241  RTQELRFARWEDIDFETKLWEIPAE------------VMKMKRPHIVPLSEQVIMLFKQL  288

Query  298  RQHCRPGTELVFPGDHNYRKPMSENTINKALRLMGYDTQKDVCGHGFRTMACSALVESGL  357
                +    LVF G ++ RKP+S ++IN+A+ L+GY  +  + GHGFR    + L E G+
Sbjct  289  EPISKHHP-LVFIGRNDPRKPISKESINQAIELLGYKGR--LTGHGFRHTMSTILHEQGF  345

Query  358  WSSDAVERQMSHQERKRVRAAYIHKAQHLEERREMMQWWADYLDA  402
             +S  +E Q++H +++ +R +Y H A  L+ RREMMQW ADY+D+
Sbjct  346  -NSAWIEMQLAHVDKNSIRDTYNH-ALYLDGRREMMQWYADYIDS  388

505) Bamb_2400 in NC_008390


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  250 bits (934),  Expect = 9e-68, Method: Compositional matrix adjust.
 Identities = 175/394 (45%), Positives = 264/394 (68%), Gaps = 4/394 (1%)

Query  1    MALTDLKVRTAKPAEKQQKLYDGGGLLLLITPAGGKRWVLKYRVDSKEKSLALGTYPDVS  60
            MALTD+KV+TAKP +K  KL DGGG+ LLI   G+K W +KYR  +KEK L++G YPDV+
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   LaeararrdnareKLAAGVDPSEakkadkraaqlaaaSSFEIVAREWFDTQRGGWSEVYA  120
            LA+AR +R +AR  LAAG DP+EAKK +K A Q++  ++FE +AREW + + + WS  Y 
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  121  GKVISCLEVDVFPRLGARPIASIDAPELLAIIRTVESRGVRETAKRVLQRSRAVFQYGIM  180
            + +I  +E D+FP +G RPIA I +  LL  +R +E RG  E  ++V QR   VF+Y+I+
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  181  TGRCARNPAADIDAETVLKKSTGVQHMARVKATEIPRLMRDIDEYSGDLVTRLALRFMAL  240
            TGR   NPA+D+ +     K     H + + A E+P+++ D+  Y+G ++T+ A +++ L
Sbjct  181  TGRADYNPAPDLASALATPKKV---HFPFLTANELPHFLNDLAGYTGSIITKTATQIIML  237

Query  241  TFVRTKEMIQAEWPEIDVDAAEWRVPAERMKMRDPHIVPLSRQALGVLAQLREINGQQRF  300
            T VRT+E+  A W +ID ++  W +PAE MKM+ PHIVPLS Q + ++ QL  I+ ++ +
Sbjct  238  TGVRTQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHPL  297

Query  301  VFYS-VQGRSHISNNTMLYALYRMGYKSRMTGHGFRGLAATALRELGYSRDVVERQMAHA  359
            VF +  + R  IS++++  A+  +GYK+R+TGHGFR   +T L+E G++   +E Q+AH 
Sbjct  298  VFIGRNDPRKPISKESINQAIELLGYKGRLTGHGFRHTMSTILHEQGFNSAWIEMQLAHV  357

Query  360  ERNQVTAAYVHAEYLPERREMMQHWADRLDELRA  393
            ++N +  +Y HA YL  RREMMQ  AD +D L +
Sbjct  358  DKNSIRDTYNHALYLDGRREMMQWYADYIDSLSS  391

506) Bcep1808_2451 in NC_009256


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  249 bits (931),  Expect = 1e-67, Method: Compositional matrix adjust.
 Identities = 174/393 (45%), Positives = 263/393 (67%), Gaps = 4/393 (1%)

Query  1    MALTDLKVRTAKPADKQQKLYDGAGLLLLITPAGGKRWIFKYRIDGKEKSLALGTYPDVS  60
            MALTD+KV+TAKP DK  KL DG+G+ LLI   G+K W  KYR+ GKEK L++G YPDV+
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   LaeararrdsareKLAAGVDPSEakkadkraaqlaaaSSFEIVAREWFETQRGGWSEVYA  120
            LA+AR +R  AR  LAAG DP+EAKK +K A Q++  ++FE +AREW + + + WS  Y 
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  121  GKVINCLEVDVFPRLGARPIANIDAPELLAIIRAVESRGVRETAKRVLQRSRAVFQYGIM  180
            + +I+ +E D+FP +G RPIA+I +  LL  +R +E RG  E  ++V QR   VF+Y+I+
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  181  TGRCSRNPAADIDAETVLKKSTGVQHMARVKVTEIPQLMRDIDEYSGDLVTRLALRFMAL  240
            TGR   NPA+D+ +     K     H + +   E+P+++ D+  Y+G ++T+ A +++ L
Sbjct  181  TGRADYNPAPDLASALATPKKV---HFPFLTANELPHFLNDLAGYTGSIITKTATQIIML  237

Query  241  TFVRTKEMIQAEWHEIDVGAAEWRVPAERMKMRDPHIVPLSRQALDVLAQLREINGQRRF  300
            T VRT+E+  A W++ID  +  W +PAE MKM+ PHIVPLS Q + ++ QL  I+ ++ +
Sbjct  238  TGVRTQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHPL  297

Query  301  VFYS-VQGRSHISNNTMLYALYRMGYKSRMTGHGFRGLAATTLRELGYSRDVVERQMAHA  359
            VF +  + R  IS++++  A+  +GYK+R+TGHGFR   +T L+E G++   +E Q+AH 
Sbjct  298  VFIGRNDPRKPISKESINQAIELLGYKGRLTGHGFRHTMSTILHEQGFNSAWIEMQLAHV  357

Query  360  ERNQVTAAYVHAEYLPERRKMMQHWADHLDELP  392
            ++N +  +Y HA YL  RR MMQ  AD +D L+
Sbjct  358  DKNSIRDTYNHALYLDGRREMMQWYADYIDSLS  390

507) YE105_C1329 in NC_015224


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  249 bits (930),  Expect = 2e-67, Method: Compositional matrix adjust.
 Identities = 164/384 (43%), Positives = 242/384 (64%), Gaps = 7/384 (1%)

Query  1    MKLTDTKIRNAKPQEKAYQLQDGNGLYLDVRPSGVKTWRYRYWVTPTKDGRYTIGSYPAV  60
            M LTD K++ AKP++K+Y+L DG G+YL +  +G K WR +Y+ +  K+   +IG YP V
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFA-GKEKMLSIGVYPDV  59

Query  61   SLAEARKVREWAREQVKSGIVPKEAKATERDIAKAESANTFEIVAREWMAKKWDNWSVNT  120
            +LA+AR  R  AR  + +G  P EAK  E+   +    NTFE +AREW   K D WS+  
Sbjct  60   TLADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRY  119

Query  121  KNQIIAFMDNDIFPAIGGMPMREINASHILKIIRELENRGAISVAVKTRQWCSAIFCYGV  180
            +++II   ++DIFP IG  P+ EI++  +L  +R +E+RGA+    K RQ+C+ +F Y++
Sbjct  120  RDEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAI  179

Query  181  ATLRADSDPAAALKGAIITPKIVHSRSLTGDELRDYYLRLESYTGTRATIIALKILPLVF  240
             T RAD +PA+ L +A+ TPK VH   LT++EL ++   L +YTG+  T  A +I+ L  
Sbjct  180  VTGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTG  239

Query  241  VRQVELRSAEWAHIDFDNAEWVIPAELMKMRRIHRVPLSKPVLSLLHELKELTGKRRWLF  300
            VR  ELR A W +IDF+   W IPAE+MKM+R H VPLS  V+ L+ +L  ++  +  +F
Sbjct  240  VRTQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHPLVF  299

Query  301  ---PNTRLDTFMGASTLNWAIVHMGYGRKVLTTHDFRATASTRLHEMGYRHDVIERQLAH  357
                + R    ++  ++N AI  +GY  + LT H+FR T ST LHE G+    IE QLAH
Sbjct  300  IGRNDPRKP--ISKESINQAIELLGYKGR-LTGHGFRHTMSTILHEQGFNSAWIEMQLAH  356

Query  358  VEKNRVSAAYNHAEYMPERRELME  381
            V+KN +  +YNHA Y+  RRE+M+
Sbjct  357  VDKNSIRDTYNHALYLDGRREMMQ  380

508) M301_1146 in NC_014207


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  249 bits (929),  Expect = 2e-67, Method: Compositional matrix adjust.
 Identities = 163/394 (42%), Positives = 257/394 (66%), Gaps = 8/394 (2%)

Query  8    LTDIKVKTAKPKEKPYKLAAGRGLHLLVKTDGSKHWQFRFRFDGKENTLAIGRYPEVSLA  67
            LTDIKVKTAKPK+KPYKLA G G+ LL++T+GSK W+ ++RF GKE+ L+IG YP+V+LA
Sbjct  3    LTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVTLA  62

Query  68   NAEKKATSSLELLAEGINPSENKKAAKASKTGALANSFEVLAREWAISYFTNKSASHKER  127
            +A  K + +  LLA G +P+E KK  K ++  +L N+FE +AREW        S   ++ 
Sbjct  63   DAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYRDE  122

Query  128  TVRRLESYIFPWLGNKPISEITAPQILEVIKRIENLNKLETAHRTMQAASQIFRHAVQTG  187
             +  +E  IFP +G++PI+EI + ++LE ++++E+   LE  ++  Q  +++FR A+ TG
Sbjct  123  IIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIVTG  182

Query  188  RALRDPTIDLRGALPAPVVKHMAAFTEPKEIAELLRAIDGFTGSFTVQCALRLSPLVFTR  247
            RA  +P+ DL +AL++P   H  +F  ++E++++L  + G+TGS+  + A ++  L   R
Sbjct  183  RADYNPAPDLASALATPKKVHF-PFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGVR  241

Query  248  PSELRMAKWADIDLEANEWRYL--VTKTKTMHLVPLSKQAAKLFTDLKAVSGHGEYVFQN  305
              ELR A+W DID+E++ W     V K K  H+VPLS Q   LF +L ++S H   VF  
Sbjct  242  TQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHPLVFIG  301

Query  306  GHDPKKPMSPAAINAALKRMGYDTQKDITAHGFRAMARTILHERLNIDPYIIEHQLAHKV  365
             +DP+KP+S  +IN A+  +GY  +  +T+HGFR    TILHE+  +++  IE QLAH  
Sbjct  302  RNDPRKPISKESINQAIELLGYKGR--LTGHGFRHTMSTILHEQ-GFNSAWIEMQLAHVD  358

Query  366  PDALGAAYNRTKFIEQRTAMMQAW-ADYLDELKA  398
             +++  +YN++ +++ R  MMQ W ADY+D L +
Sbjct  359  KNSIRDTYNHALYLDGRREMMQ-WYADYIDSLSS  391

509) H650_08995 in NC_021500


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  248 bits (927),  Expect = 3e-67, Method: Compositional matrix adjust.
 Identities = 155/384 (41%), Positives = 248/384 (65%), Gaps = 2/384 (0%)

Query  7    PLTNTEVSRAKATDKDLTLHDGDGLFLMVKTSGKKLWRFRYQRPTTKQRTMIGLGAFPAL  66
            +LT+  V  AK+ DK   L DG+G++L+++T+G K WR +Y R + K++ M+++G +P +
Sbjct  2    ALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKY-RFAGKEK-MLSIGVYPDV  59

Query  67   SLAEARGLRAQYLSLLARGIDPqiqaeqaeeqqqiaLESIFSNVAANWFAMKRNSVTPDY  126
            +LA+AR  R++   LLA G DP     +    QQ++L + F  +A +W  +K +  +  Y
Sbjct  60   TLADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRY  119

Query  127  AKDIWRSLEKDIFPAIGEIPVQKIRARTLVEALEPIKARGALETVRRLVQRINEIMIYAV  186
              +I  ++EKDIFP IG  P+  I++  L+EAL  +  RGALE +R++ QR  E+  YA+
Sbjct  120  RDEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAI  179

Query  187  NTGLIDANPASGIGMAFEKPKKQNMPTLRPEELPKLMRSLVMSNLSIPTRCLIEWQLLTL  246
             TG  D NPA++++ A+  PKK + P L ++ELP ++  L     SI T+   +  +LT 
Sbjct  180  VTGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTG  239

Query  247  VRPSEAAGTQWAEIDLDAKLWTIPAERMKAKREHIVPLSPQALEILEVMKPISAHRDHIF  306
            VR  E   ++W +ID+++KLW IPAE MK KR HIVPLS Q + ++  + PIS H+  +F
Sbjct  240  VRTQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHPLVF  299

Query  307  PSRNDPQQSMNSQTANAALKRIGYGGKLVAHGLRSIASTTLNEEGFNGDVIESALAHADK  366
             +RNDP+++++ ++ N A+  +GY G+L +HG+R   ST L+E+GFN+  IE  LAH DK
Sbjct  300  IGRNDPRKPISKESINQAIELLGYKGRLTGHGFRHTMSTILHEQGFNSAWIEMQLAHVDK  359

Query  367  NEVRKAYNKSTYLNQRRDLMAWWG  390
            N +R +YN + YL+ RR++M W +
Sbjct  360  NSIRDTYNHALYLDGRREMMQWYA  383

510) Pecwa_0958 in NC_013421


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  248 bits (926),  Expect = 4e-67, Method: Compositional matrix adjust.
 Identities = 157/387 (41%), Positives = 247/387 (64%), Gaps = 2/387 (0%)

Query  7    PLTHTEVQKAKATDKDLTLHDGNGLFLLVKTTGKKLWRFRYQKPTTGQRTMIGFGAYPAL  66
            +LT+  V+ AK+ DK   L DG G++LL++T G K WR +Y+   +G+  M+++G YP +
Sbjct  2    ALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYR--FAGKEKMLSIGVYPDV  59

Query  67   SLADARAMRDEKLSLLAKGIDPQekvakeeeeakiaveSIFLNVARSWFALKQTNVSADH  126
            +LADAR  R E   LLA G DP E    E    ++++ + F  +AR W  LK    S   
Sbjct  60   TLADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRY  119

Query  127  AKDIWRSLEKDVLPAIENIPVQEIKARTLIQALEPIKARGALETVRRLVQRINEIMVYAV  186
              +I  ++EKD++P I + P+ EIK+  L++AL  +  RGALE +R++ QR  E+  YA+
Sbjct  120  RDEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAI  179

Query  187  NTGLIDANPASGIGMAFERPKKQHMPTIRPEELPKLMRTIAMSNLSIPTRCLLEWQLLTL  246
             TG  D NPA++++ A+  PKK H P + ++ELP ++  +A    SI T+   +  +LT 
Sbjct  180  VTGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTG  239

Query  247  IRPAEASATAWAEIDIEKRTWSIPAERMKAKRDHIVPLSDQALELLDIMRPISGNREHVF  306
            +R  E   + W +ID+E + W IPAE MK KR HIVPLS+Q + L+  + PIS ++  VF
Sbjct  240  VRTQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHPLVF  299

Query  307  PSRNDPKKPMNSQTANAALKRIGYGGKLVAHGLRSIASTAMNEAGFNPDVIEAALAHCDK  366
             +RNDP+KP++ ++ N A+  +GY G+L +HG+R   ST ++E GFN+  IE  LAH DK
Sbjct  300  IGRNDPRKPISKESINQAIELLGYKGRLTGHGFRHTMSTILHEQGFNSAWIEMQLAHVDK  359

Query  367  NEVRRAYNRSTYLEQRKELMDWWGNFV  393
            N +R +YN++ YL+ R+E+M+W ++++
Sbjct  360  NSIRDTYNHALYLDGRREMMQWYADYI  386

511) ETA_03770 in NC_010694


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  247 bits (924),  Expect = 4e-67, Method: Compositional matrix adjust.
 Identities = 150/352 (43%), Positives = 243/352 (70%), Gaps = 16/352 (4%)

Query  1    MALSDVKVRSAKPEVKACKLTDGDGMVLLAHPNGSKYWRLRYRFGGKEKMLALGKYPEVS  60
            MAL+D+KV++AKP  K+ KL+DG+GM LL + NGSKYWR++YRF+GKEKML++G YP+V+
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   LadararrdearKLLANGVDPSENKKAFKVEQEQE-AITFEMVARDWQA-SNQKWSASHS  118
            LADAR +R EARKLLA G DP+E KK  K+ Q+     TFE +AR+W+    ++WS    
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  119  ARVLKSLEDNLFAAIGKRNIAELKTRDLLVPIKAVESSGRLEVAARLQQRTTAIMRFAVQ  178
              ++ ++E ++F+ IGKR IAE+K   LL +++ +E  G LE   +++QR   + R+A+ 
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  179  SGLIDYNPAQEIAGAVATAKRQHRAALELSRIPELLHRIDHYSGRPltrlaleltllVFI  238
            +G  DYNPA ++A+A+AT+K+ H + L  + +P++L+ +  Y+G  +T+ A ++ +L  +
Sbjct  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV  240

Query  239  RSSELCFARWSEVDFETAMWTIPGEREPSEGVKHSQRGSKMRTPHLVPLSRQALGILEKI  298
            R+ EL FARW ++DFET +W IP+E              KM+ PH+VPLS Q + ++ ++
Sbjct  241  RTQELRFARWEDIDFETKLWEIPAE------------VMKMKRPHIVPLSEQVIMLFKQL  288

Query  299  KSMSGNRELIFVGDHDPRKPMSENTVNKALRVMGYDTKVEVCGHGFRTMACS  350
             ++S ++ L+F+G +DPRKP+S +++N+A+ ++GY  +  + GHGFR    +
Sbjct  289  EPISKHHPLVFIGRNDPRKPISKESINQAIELLGYKGR--LTGHGFRHTMST  338

512) PAU_03975 in NC_012962


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  247 bits (922),  Expect = 5e-67, Method: Compositional matrix adjust.
 Identities = 138/290 (48%), Positives = 203/290 (70%), Gaps = 15/290 (5%)

Query  1    MALTDIKVRTAKPTDKQYKLTDGNGMHLLVHPNGSRYWRLQYRFGGKQKMLALGVYPEVS  60
            MALTDIKV+TAKP DK YKL+DG GM LL++ NGS+YWR++YRF+GK+KML++GVYP+V+
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   LADSRARRDEARKLLANGIDPGDKKKNDKIEQEET--RTFEQLAVEWHA-TNKKWSEEHS  117
            LAD+R +R EARKLLA G DPG+ KK++KI Q+ +   TFE +A EWH     +WS    
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  118  RRVLKSLEDNLFPAIGKRNIAELKTRDLLAPIKAVELSGRLEVASRLQQRTTAIMRYAVQ  177
              ++ ++E ++FP IGKR IAE+K   LL +++ +E  G LE   +++QR   + RYA+ 
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  178  SGLLDYNPAQEMVGAVASSNRQHRPALELKRTPELLQRIESYTGRSLTRLAVELTLLVFI  237
            +G  DYNPA ++ +A+A++++ H P L  +  P++L+ + +YTG  +T+ A ++ +L  +
Sbjct  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV  240

Query  238  RSSELRFARWSEIDFETSIWTIPAEREAIEGVKHSQRGSKIRTPHLVPLS  287
            R+ ELRFARW +IDFET +W IPAE              K++ PH+VPLS
Sbjct  241  RTQELRFARWEDIDFETKLWEIPAE------------VMKMKRPHIVPLS  278

513) NMBM01240355_1501 in NC_017517


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  247 bits (922),  Expect = 6e-67, Method: Compositional matrix adjust.
 Identities = 156/361 (44%), Positives = 231/361 (64%), Gaps = 0/361 (0%)

Query  1    MYLYVNTGGGKLWRFDFSHNGKRKTLSIGKYPTVSLVEARQTAENARRLLAAGQDPGEAK  60
            MYL +NT G+K WR  +   GK K LSIG YP V+L +AR+   +AR+LLAAG DPGEAK
Sbjct  26   MYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVTLADAREKRSEARKLLAAGGDPGEAK  85

Query  61   QQEKRERQAAVSNTFRSIAAEWHKHRETGLTGNHAARVWDSLKKDVFPMLGGLPVSEIKV  120
            ++EK  +Q ++ NTF +IA EWH+ +    +      + D++ KD+FP +G  P++EIK 
Sbjct  86   KEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYRDEIIDTFEKDIFPYIGKRPIAEIKP  145

Query  121  SQVKEVIEAVAARGALETAGRILQRIKAVFTYAIQTERAENNPAVPLVGLIKAPKQKHQP  180
             ++ E +  +  RGALE   ++ QR   VF YAI T RA+ NPA  L + + +PK+ H P
Sbjct  146  MKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIVTGRADYNPAPDLASALATPKKVHFP  205

Query  181  ALPQSELTEFYRRLMLEQAERQTKIAMQLIMLTFVRNGELRAAEWVEFDLNGAEWSIPAA  240
             L  +EL +F   L    +   TK A Q+IMLT VR  ELR A W ++D++   W IPA 
Sbjct  206  FLTANELPHFLNDLAGYTGSIITKTATQIIMLTGVRTQELRFARWEDIDFETKLWEIPAE  265

Query  241  KMKMKAPHIVPLADWTLELLAELKEITGHSRYLFPSVKDPDKHMSENILSYLMGRMGYKG  300
             MKMK PHIVPL++  + L+ +L  I+ H   +F + +DP K +S + ++  +  +GYKG
Sbjct  266  VMKMKRPHIVPLSEQVIMLFKQLEPISKHHPLVFIGRNDPRKPISKESINQAIELLGYKG  325

Query  301  IATPHGFRSLATDVLNENGFDSDVIERQLAHVEQNKVRAAYHRTEYIPQRKELMQWYSDC  360
              T HGFR   + +L+E+GF+S  IE QLAHV++N +R +Y+++ Y+  R+E+MQWY+D 
Sbjct  326  RLTGHGFRHTMSTILHEQGFNSAWIEMQLAHVDKNSIRDTYNHALYLDGRREMMQWYADY  385

Query  361  L  361
            +
Sbjct  386  I  386

514) Bamb_1839 in NC_008390


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  247 bits (922),  Expect = 7e-67, Method: Compositional matrix adjust.
 Identities = 164/395 (42%), Positives = 257/395 (66%), Gaps = 5/395 (1%)

Query  1    MPLTDIKIRQAKAGNKPTKLTDGNGLYLLVKPSGSKLWRYKYRIAGKENVFAIGEYPTTS  60
            M+LTDIK++ AK+ +KP KL+DG G+YLL++ +GSK WR KYR+AGKE++++IG YP  +
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   LQAARVARDDARELVKKGLHPSHARQEVLSARINEGKATFRAVSDEWLEKKRKTWTERHF  120
            L  AR  R +AR L+  G +P++A++E   A+    K TF A++ EW + K   W+ R  
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  121  GEILRMLEADAYPYIGNRPMRSITAHDVLALMRRVEKRGSPSVAIKLRQYVSNVFQYAVI  180
            +EI+  +E D +PYIG+RP+  I +  +L  +R++EKRG+     K+RQ  ++VF+YA++
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  181  TLRADTDPASVLRGAVLKPPTEHARPLSREELKALFRQLPLYKSKRTT-IAIRLLMMLFP  239
            T RAD +PA+ L +A+  P   H   L+ +EL  ++ +L+ Y +   T  A +++M+   
Sbjct  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV  240

Query  240  RTVELCRARWEEIDLAAAEWRVPPEKIKSRRLHIVPLPTQAISLLRELQEIHGNRGYILP  299
            RT EL  ARWE+ID+ +  W +P+E +K +R HIVPL+ Q I L+++L+ I  ++   L 
Sbjct  241  RTQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHP--LV  298

Query  300  ILHSNRKRPHMSRATINRALDSMMPNNPEPITGHDFRATASTNLHEMGWKDEVVEMQLSH  359
            ++  N  R  +S+ +IN+A++  +      +TGH+FR T ST LHE G +   +EMQL+H
Sbjct  299  FIGRNDPRKPISKESINQAIE--LLGYKGRLTGHGFRHTMSTILHEQGFNSAWIEMQLAH  356

Query  360  KDKDRTRSTYNHAKYLPERREMMQSWADWLSDVEN  394
             DK+  R TYNHA YL  RREMMQ  AD +  + +
Sbjct  357  VDKNSIRDTYNHALYLDGRREMMQWYADYIDSLSS  391

515) A225_4472 in NC_018106


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  247 bits (922),  Expect = 8e-67, Method: Compositional matrix adjust.
 Identities = 157/387 (41%), Positives = 252/387 (66%), Gaps = 2/387 (0%)

Query  7    PLTNTEVLRAKALEKDLTLHDGDGLFLIVKTSGKKLWRFRYQRPATKQRTMMGLGPFPAL  66
            +LT+  V  AK+ +K   L DG+G++L+++T+G K WR +Y R A K++ M+++G +P +
Sbjct  2    ALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKY-RFAGKEK-MLSIGVYPDV  59

Query  67   SLADARGLRADYLALLANGIDPqvqaevaeeeLQIALDSIFLTVAANWFQLKSKSVTPDY  126
            +LADAR  R++   LLA G DP           Q++L + F ++A +W QLK+   +  Y
Sbjct  60   TLADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRY  119

Query  127  AKDIWRSLEKDVFPAIGEIPVQQIKARTLVEALEPIKARGALETVRRLVQRINEIMIYAV  186
              +I  ++EKD+FP IG  P+ +IK+  L+EAL  +  RGALE +R++ QR  E+  YA+
Sbjct  120  RDEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAI  179

Query  187  NTGLIDANPASGVGMAFEKPKKQNMPTLRPEELPKLMRSLVMSNLSVPTRCLIEWQLLTL  246
             TG  D NPA++++ A+  PKK + P L ++ELP ++  L     S+ T+   +  +LT 
Sbjct  180  VTGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTG  239

Query  247  VRPSEASGARWAEIDLDSKLWTIPAERMKAKREHIVPLSSQALEILEVMKPISAHREHVF  306
            VR  E   ARW +ID+++KLW IPAE MK KR HIVPLS Q + ++  + PIS H+  VF
Sbjct  240  VRTQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHPLVF  299

Query  307  PSRNDPKQPMNSQTANAALKRIGYGGKLVAHGLRSIASTYLNEEGLESDIIESCLAHIDK  366
             +RNDP++P++ ++ N A+  +GY G+L +HG+R   ST L+E+G++S  IE  LAH+DK
Sbjct  300  IGRNDPRKPISKESINQAIELLGYKGRLTGHGFRHTMSTILHEQGFNSAWIEMQLAHVDK  359

Query  367  NEVRRAYNRSTYLERRKITMEYWGGFV  393
            N +R +YN++ YL+ R+  M+  ++++
Sbjct  360  NSIRDTYNHALYLDGRREMMQWYADYI  386

516) intA in NC_013956


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  247 bits (921),  Expect = 9e-67, Method: Compositional matrix adjust.
 Identities = 164/387 (43%), Positives = 253/387 (66%), Gaps = 2/387 (0%)

Query  7    PLTNTEVLRAKAVDKELTLHDGDGLFLLVKTSGKKLWRFRYQRPKTKQRTMMGLGAFPal  66
            +LT+  V  AK+ DK   L DG+G++LL++T+G K WR +Y R   K++ M+++G +P +
Sbjct  2    ALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKY-RFAGKEK-MLSIGVYPDV  59

Query  67   sladarrlraEYLSLLANGIDPqtqaeqateqqqIALESIFSTVAANWFQLKSKSVTPDY  126
            +LADAR  R+E   LLA G DP     +    QQ++L + F ++A +W QLK+   +  Y
Sbjct  60   TLADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRY  119

Query  127  AKDIWRSLEKDVFPAIGEIPVQQIKARTLVEALEPIKVRGALETVRRLVQRINEIMIYAT  186
              +I  ++EKD+FP IG  P+ +IK+  L+EAL  +  RGALE +R++ QR  E+  YA 
Sbjct  120  RDEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAI  179

Query  187  NTGLIDANPGSGIGMAFEKPKKQNMPTLRPEELPNLMRSLAMSNLSVTTRCLIEWQLLTL  246
             TG  D NP+++++ A+  PKK + P L ++ELP+++  LA    S+ T+   +  +LT 
Sbjct  180  VTGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTG  239

Query  247  VRPSEASGTRWIEIDFAAKLWVIPAERMKSKREHIVPLSPQALDILEVLKPISVHREYVF  306
            VR  E   +RW +IDF +KLW IPAE MK KR HIVPLS Q + ++  L PIS H+  VF
Sbjct  240  VRTQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHPLVF  299

Query  307  PSRNDPRQPMNSQTANAALKRIGYRGKLVAHGLRSIASTALNESNFNSDVIESALAHSDR  366
             +RNDPR+P++ ++ N A+  +GY+G+L +HG+R   ST L+E  FNS  IE  LAH D+
Sbjct  300  IGRNDPRKPISKESINQAIELLGYKGRLTGHGFRHTMSTILHEQGFNSAWIEMQLAHVDK  359

Query  367  NEVRKAYNRSIYLKQRVELMDWWGNFV  393
            N +R +YN+++YL  R E+M+W ++++
Sbjct  360  NSIRDTYNHALYLDGRREMMQWYADYI  386

517) ECL_03606 in NC_014121


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  246 bits (920),  Expect = 1e-66, Method: Compositional matrix adjust.
 Identities = 162/393 (42%), Positives = 247/393 (63%), Gaps = 7/393 (1%)

Query  19   MPLTDTKIRNAKPQERPYSLQDGQGLYLDVRPTGAKIWRYRFWITPKKDGRYTIGEYPGV  78
            M+LTD K++ AKP+++PY L DG G+YL +   G+K WR +++++ K +   +IG YP+V
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGK-EKMLSIGVYPDV  59

Query  79   SLadarrerewareQVKQGKNPTIVKDTEKLMVMGDAENTFKSIAEEWYERKCQTWAEK-  137
            +LADAR  R  AR  +  G +P   K  EK+       NTF +IA EW + K + W+ + 
Sbjct  60   TLADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRY  119

Query  138  -TQIVNRGFLDKHILPSIGKIPVKDIKAAHILALMLSLEKAGNAYSAGKVRQICSAVFCY  196
              +I++   ++K+I+P IGK P+ +IK+  +L  +  +EK G      KVRQ C+ VF Y
Sbjct  120  RDEIIDT--FEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRY  177

Query  197  AVATLRAEVDPSYALRGAVMQKPTTHARPATTGELRQLFVALRNYKSPVMV-ICIKMLVM  255
            A+ T RA+ +P+  L +A+      H    T+ EL +++  L  Y ++++     +++++
Sbjct  178  AIVTGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIML  237

Query  256  TFVRQQELRFARWEDISFEKAEWIIPKEVMKKRREHRVPLCEHVISLLEELKPLTGDKEY  315
            T VR QELRFARWEDI FE   W IP EVMK +R H VPL E+VI L+ +L P++ +   
Sbjct  238  TGVRTQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHPL  297

Query  316  LFPSPSKAGQPIAKTTINRAIEYQGFASGEITGHDFRATASTALYEQGFRPEVIEAQLAH  375
            +F + + + +PI+K +IN+AIE  G+  G +TGH+FR T ST L EQGF +  IE QLAH
Sbjct  298  VFIGRNDPRKPISKESINQAIELLGY-KGRLTGHGFRHTMSTILHEQGFNSAWIEMQLAH  356

Query  376  QQKNRVAAAYNHAEYMKERREMMEWWGGVIADL  408
             +KN +  +YNHA Y+  RREMM+W ++ I  L
Sbjct  357  VDKNSIRDTYNHALYLDGRREMMQWYADYIDSL  389

518) Vapar_2301 in NC_012791


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  246 bits (920),  Expect = 1e-66, Method: Compositional matrix adjust.
 Identities = 163/397 (42%), Positives = 251/397 (64%), Gaps = 14/397 (3%)

Query  2    LTDTFVRQVKHKGSEIGERYADGGGMYLRVKAAG-KYWRMDYRFNGKAKTLALGVYPAVS  60
            LTD  V+  K K+     + ADGGGMYL +++ G KYWRM YRF GK K L++GVYP V+
Sbjct  3    LTDIKVKTAKPKDKPY--KLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   LAKARQRRDKARELLADNVDPGLAKRAEKLSRAVEAANTFEALAREFHATKASSWSASYS  120
            LA AR++R  AR LLA   DPG AK+ EK+++ +   NTFEA+ARE H  KA  WS  Y 
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  121  ERWMRIMDKDLFPYIGKLPIATIQAKDLLHALKRAESRGVIETAHTLRQCAGQVFRYGVQ  180
            +  +   +KD+FPYIGK PIA I++  LL+AL++ E RG +E  + +RQ  G+VFRY++ 
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  181  TGRCASNPAPDLHGALRPVITKSMAAVLEPQKVGELMRAIYGYSGQPITRAALLLSALLF  240
            TGR   NPAPDL +AL +   K   + L ++ + +++  + GY+G  IT++A  +  L  
Sbjct  181  TGRADYNPAPDLASAL-ATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTG  239

Query  241  QRPGNIRAMEWAWIDLDKAMLTIPAQDMKRRLHEKRNGRPHFVPLAKQALQTLEEIAPLT  300
             R  ++R   W  ID++  +  IPA+ MK +       RPH+VPL+ Q +  + ++ P++
Sbjct  240  VRTQELRFARWEDIDFETKLWEIPAEVMKMK-------RPHIVPLSEQVIMLFKQLEPIS  292

Query  301  GHGRYVFPSIRTGERPMSENTVNAALRRLGYTNDEMTAHGFRAMARTVMAEQLHGISPDV  360
             H   VF +     +P+S +++N A+  LGY ++ +T+HGFR    T++ EQ  G+++  
Sbjct  293  KHHPLVFIGRNDPRKPISKESINQAIELLGY-KGRLTGHGFRHTMSTILHEQ--GFNSAW  349

Query  361  IEAQLAHGKSGPLGAAYDRAEFMDKRKDMMQRWADYL  397
            IE QLAH    ++  +Y++A ++D R++MMQ+ ADY+
Sbjct  350  IEMQLAHVDKNSIRDTYNHALYLDGRREMMQWYADYI  386

519) NMV_0809 in NC_017501


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  245 bits (915),  Expect = 2e-66, Method: Compositional matrix adjust.
 Identities = 157/361 (44%), Positives = 232/361 (65%), Gaps = 0/361 (0%)

Query  1    MYLYVNTSGGKLWRFDFSHNGKRKTLSIGKYPTVSLLEARQTSENARRLLAAGQDPGEAK  60
            MYL +NT+G+K WR  +   GK K LSIG YP V+L +AR+   +AR+LLAAG DPGEAK
Sbjct  26   MYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVTLADAREKRSEARKLLAAGGDPGEAK  85

Query  61   QQEKRERQAAVSNTFRSIAAEWHKHCETGLTGNHAARVWDSLEKDVFPMLGGLPVSEIKV  120
            ++EK  +Q ++ NTF +IA EWH+      +      + D++EKD+FP +G  P++EIK 
Sbjct  86   KEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYRDEIIDTFEKDIFPYIGKRPIAEIKP  145

Query  121  SQVKEVIEAVAARGALETAGRILQRIKAVFTYAIRTERAENNPAVPLVGLIKAPKQKHQP  180
             ++ E +  +  RGALE   ++ QR   VF YAI T RA+ NPA  L + + +PK+ H P
Sbjct  146  MKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIVTGRADYNPAPDLASALATPKKVHFP  205

Query  181  ALPQSELTEFYRRLMLEQAERQTKIAMQLIMLTFVRNGELRAAEWVEFDLNGAEWSIPAA  240
             L  +EL +F   L    +   TK A Q+IMLT VR  ELR A W ++D++   W IPA 
Sbjct  206  FLTANELPHFLNDLAGYTGSIITKTATQIIMLTGVRTQELRFARWEDIDFETKLWEIPAE  265

Query  241  KMKMKAPHIVPLADWTLELLAELKEITGHSRYLFPSVKDPDKHMSENILSYLMGRMGYKG  300
             MKMK PHIVPL++  + L+ +L  I+ H   +F + +DP K +S + ++  +  +GYKG
Sbjct  266  VMKMKRPHIVPLSEQVIMLFKQLEPISKHHPLVFIGRNDPRKPISKESINQAIELLGYKG  325

Query  301  IATPHGFRSLATDVLNENGFDSDVIERQLAHVEQNKVRAAYHRTEYIPQRKELMQWYSDC  360
              T HGFR   + +L+E+GF+S  IE QLAHV++N +R +Y+++ Y+  R+E+MQWY+D 
Sbjct  326  RLTGHGFRHTMSTILHEQGFNSAWIEMQLAHVDKNSIRDTYNHALYLDGRREMMQWYADY  385

Query  361  L  361
            +
Sbjct  386  I  386

520) A1122_19345 in NC_017168


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  245 bits (916),  Expect = 2e-66, Method: Compositional matrix adjust.
 Identities = 157/384 (41%), Positives = 244/384 (64%), Gaps = 2/384 (0%)

Query  7    PLTHTEVQKAKATDKDLTLHDGDGLFLLVKTTGKKIWRFRYQLPNSSKRTMISLGAYPAL  66
            +LT+  V+ AK+ DK   L DG+G++LL++T G K WR +Y+++   K  M+S+G YP +
Sbjct  2    ALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEK--MLSIGVYPDV  59

Query  67   SLADAREIRAEKLAMLVRGTDPQTRAGEEAEKLQIAEESIFVNVARKWFELKESHVSAAH  126
            +LADARE R+E   +L  G DP     EE    Q++  + F  +AR W +LK  + S   
Sbjct  60   TLADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRY  119

Query  127  AKDIWRSIEKDILPSIENIPIQELKARTLIQVLEPIKARGALETVRRLVQRINEIMIYAV  186
              +I  ++EKDI+P I + PI E+K+  L++ L  +  RGALE +R++ QR  E+  YA+
Sbjct  120  RDEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAI  179

Query  187  NVGLIDANPASGIGNAFERPKKQHMPTIRPEELPKLMRTIAMSNLSLPTRCLLEWQLLTL  246
              G  D NPA+++++A+  PKK H P + ++ELP ++  +A    S+ T+   +  +LT 
Sbjct  180  VTGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTG  239

Query  247  IRPAEASATAWIEIDLENKQWCIPAERMKAKRDHIVPLSEQALELLEIMRPISGNRQHVF  306
            +R  E   + W +ID+E K W IPAE MK KR HIVPLSEQ + L+  + PIS ++  VF
Sbjct  240  VRTQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHPLVF  299

Query  307  PSRNDPRNHMNSQTANAALKRIGYGGKLVAHGLRSIASTAMNEAGFNADVIEAALAHSDK  366
             +RNDPR+ ++ ++ N A+  +GY G+L +HG+R   ST ++E GFN+  IE  LAH DK
Sbjct  300  IGRNDPRKPISKESINQAIELLGYKGRLTGHGFRHTMSTILHEQGFNSAWIEMQLAHVDK  359

Query  367  NEVRKAYNRSTYLIQRQELMNWWG  390
            N +R +YN++ YL  R+E+M+W +
Sbjct  360  NSIRDTYNHALYLDGRREMMQWYA  383

521) YpAngola_A1370 in NC_010159


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  245 bits (916),  Expect = 2e-66, Method: Compositional matrix adjust.
 Identities = 157/384 (41%), Positives = 244/384 (64%), Gaps = 2/384 (0%)

Query  7    PLTHTEVQKAKATDKDLTLHDGDGLFLLVKTTGKKIWRFRYQLPNSSKRTMISLGAYPAL  66
            +LT+  V+ AK+ DK   L DG+G++LL++T G K WR +Y+++   K  M+S+G YP +
Sbjct  2    ALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEK--MLSIGVYPDV  59

Query  67   SLADAREIRAEKLAMLVRGTDPQTRAGEEAEKLQIAEESIFVNVARKWFELKESHVSAAH  126
            +LADARE R+E   +L  G DP     EE    Q++  + F  +AR W +LK  + S   
Sbjct  60   TLADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRY  119

Query  127  AKDIWRSIEKDILPSIENIPIQELKARTLIQVLEPIKARGALETVRRLVQRINEIMIYAV  186
              +I  ++EKDI+P I + PI E+K+  L++ L  +  RGALE +R++ QR  E+  YA+
Sbjct  120  RDEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAI  179

Query  187  NVGLIDANPASGIGNAFERPKKQHMPTIRPEELPKLMRTIAMSNLSLPTRCLLEWQLLTL  246
              G  D NPA+++++A+  PKK H P + ++ELP ++  +A    S+ T+   +  +LT 
Sbjct  180  VTGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTG  239

Query  247  IRPAEASATAWIEIDLENKQWCIPAERMKAKRDHIVPLSEQALELLEIMRPISGNRQHVF  306
            +R  E   + W +ID+E K W IPAE MK KR HIVPLSEQ + L+  + PIS ++  VF
Sbjct  240  VRTQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHPLVF  299

Query  307  PSRNDPRNHMNSQTANAALKRIGYGGKLVAHGLRSIASTAMNEAGFNADVIEAALAHSDK  366
             +RNDPR+ ++ ++ N A+  +GY G+L +HG+R   ST ++E GFN+  IE  LAH DK
Sbjct  300  IGRNDPRKPISKESINQAIELLGYKGRLTGHGFRHTMSTILHEQGFNSAWIEMQLAHVDK  359

Query  367  NEVRKAYNRSTYLIQRQELMNWWG  390
            N +R +YN++ YL  R+E+M+W +
Sbjct  360  NSIRDTYNHALYLDGRREMMQWYA  383

522) YPA_0577 in NC_008150


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  245 bits (916),  Expect = 2e-66, Method: Compositional matrix adjust.
 Identities = 157/384 (41%), Positives = 244/384 (64%), Gaps = 2/384 (0%)

Query  7    PLTHTEVQKAKATDKDLTLHDGDGLFLLVKTTGKKIWRFRYQLPNSSKRTMISLGAYPAL  66
            +LT+  V+ AK+ DK   L DG+G++LL++T G K WR +Y+++   K  M+S+G YP +
Sbjct  2    ALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEK--MLSIGVYPDV  59

Query  67   SLADAREIRAEKLAMLVRGTDPQTRAGEEAEKLQIAEESIFVNVARKWFELKESHVSAAH  126
            +LADARE R+E   +L  G DP     EE    Q++  + F  +AR W +LK  + S   
Sbjct  60   TLADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRY  119

Query  127  AKDIWRSIEKDILPSIENIPIQELKARTLIQVLEPIKARGALETVRRLVQRINEIMIYAV  186
              +I  ++EKDI+P I + PI E+K+  L++ L  +  RGALE +R++ QR  E+  YA+
Sbjct  120  RDEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAI  179

Query  187  NVGLIDANPASGIGNAFERPKKQHMPTIRPEELPKLMRTIAMSNLSLPTRCLLEWQLLTL  246
              G  D NPA+++++A+  PKK H P + ++ELP ++  +A    S+ T+   +  +LT 
Sbjct  180  VTGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTG  239

Query  247  IRPAEASATAWIEIDLENKQWCIPAERMKAKRDHIVPLSEQALELLEIMRPISGNRQHVF  306
            +R  E   + W +ID+E K W IPAE MK KR HIVPLSEQ + L+  + PIS ++  VF
Sbjct  240  VRTQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHPLVF  299

Query  307  PSRNDPRNHMNSQTANAALKRIGYGGKLVAHGLRSIASTAMNEAGFNADVIEAALAHSDK  366
             +RNDPR+ ++ ++ N A+  +GY G+L +HG+R   ST ++E GFN+  IE  LAH DK
Sbjct  300  IGRNDPRKPISKESINQAIELLGYKGRLTGHGFRHTMSTILHEQGFNSAWIEMQLAHVDK  359

Query  367  NEVRKAYNRSTYLIQRQELMNWWG  390
            N +R +YN++ YL  R+E+M+W +
Sbjct  360  NSIRDTYNHALYLDGRREMMQWYA  383

523) YPC_1149 in NC_017265


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  245 bits (916),  Expect = 2e-66, Method: Compositional matrix adjust.
 Identities = 157/384 (41%), Positives = 244/384 (64%), Gaps = 2/384 (0%)

Query  7    PLTHTEVQKAKATDKDLTLHDGDGLFLLVKTTGKKIWRFRYQLPNSSKRTMISLGAYPAL  66
            +LT+  V+ AK+ DK   L DG+G++LL++T G K WR +Y+++   K  M+S+G YP +
Sbjct  2    ALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEK--MLSIGVYPDV  59

Query  67   SLADAREIRAEKLAMLVRGTDPQTRAGEEAEKLQIAEESIFVNVARKWFELKESHVSAAH  126
            +LADARE R+E   +L  G DP     EE    Q++  + F  +AR W +LK  + S   
Sbjct  60   TLADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRY  119

Query  127  AKDIWRSIEKDILPSIENIPIQELKARTLIQVLEPIKARGALETVRRLVQRINEIMIYAV  186
              +I  ++EKDI+P I + PI E+K+  L++ L  +  RGALE +R++ QR  E+  YA+
Sbjct  120  RDEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAI  179

Query  187  NVGLIDANPASGIGNAFERPKKQHMPTIRPEELPKLMRTIAMSNLSLPTRCLLEWQLLTL  246
              G  D NPA+++++A+  PKK H P + ++ELP ++  +A    S+ T+   +  +LT 
Sbjct  180  VTGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTG  239

Query  247  IRPAEASATAWIEIDLENKQWCIPAERMKAKRDHIVPLSEQALELLEIMRPISGNRQHVF  306
            +R  E   + W +ID+E K W IPAE MK KR HIVPLSEQ + L+  + PIS ++  VF
Sbjct  240  VRTQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHPLVF  299

Query  307  PSRNDPRNHMNSQTANAALKRIGYGGKLVAHGLRSIASTAMNEAGFNADVIEAALAHSDK  366
             +RNDPR+ ++ ++ N A+  +GY G+L +HG+R   ST ++E GFN+  IE  LAH DK
Sbjct  300  IGRNDPRKPISKESINQAIELLGYKGRLTGHGFRHTMSTILHEQGFNSAWIEMQLAHVDK  359

Query  367  NEVRKAYNRSTYLIQRQELMNWWG  390
            N +R +YN++ YL  R+E+M+W +
Sbjct  360  NSIRDTYNHALYLDGRREMMQWYA  383

524) YPO1098 in NC_003143


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  245 bits (916),  Expect = 2e-66, Method: Compositional matrix adjust.
 Identities = 157/384 (41%), Positives = 244/384 (64%), Gaps = 2/384 (0%)

Query  7    PLTHTEVQKAKATDKDLTLHDGDGLFLLVKTTGKKIWRFRYQLPNSSKRTMISLGAYPAL  66
            +LT+  V+ AK+ DK   L DG+G++LL++T G K WR +Y+++   K  M+S+G YP +
Sbjct  2    ALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEK--MLSIGVYPDV  59

Query  67   SLADAREIRAEKLAMLVRGTDPQTRAGEEAEKLQIAEESIFVNVARKWFELKESHVSAAH  126
            +LADARE R+E   +L  G DP     EE    Q++  + F  +AR W +LK  + S   
Sbjct  60   TLADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRY  119

Query  127  AKDIWRSIEKDILPSIENIPIQELKARTLIQVLEPIKARGALETVRRLVQRINEIMIYAV  186
              +I  ++EKDI+P I + PI E+K+  L++ L  +  RGALE +R++ QR  E+  YA+
Sbjct  120  RDEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAI  179

Query  187  NVGLIDANPASGIGNAFERPKKQHMPTIRPEELPKLMRTIAMSNLSLPTRCLLEWQLLTL  246
              G  D NPA+++++A+  PKK H P + ++ELP ++  +A    S+ T+   +  +LT 
Sbjct  180  VTGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTG  239

Query  247  IRPAEASATAWIEIDLENKQWCIPAERMKAKRDHIVPLSEQALELLEIMRPISGNRQHVF  306
            +R  E   + W +ID+E K W IPAE MK KR HIVPLSEQ + L+  + PIS ++  VF
Sbjct  240  VRTQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHPLVF  299

Query  307  PSRNDPRNHMNSQTANAALKRIGYGGKLVAHGLRSIASTAMNEAGFNADVIEAALAHSDK  366
             +RNDPR+ ++ ++ N A+  +GY G+L +HG+R   ST ++E GFN+  IE  LAH DK
Sbjct  300  IGRNDPRKPISKESINQAIELLGYKGRLTGHGFRHTMSTILHEQGFNSAWIEMQLAHVDK  359

Query  367  NEVRKAYNRSTYLIQRQELMNWWG  390
            N +R +YN++ YL  R+E+M+W +
Sbjct  360  NSIRDTYNHALYLDGRREMMQWYA  383

525) YPD4_0956 in NC_017154


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  245 bits (916),  Expect = 2e-66, Method: Compositional matrix adjust.
 Identities = 157/384 (41%), Positives = 244/384 (64%), Gaps = 2/384 (0%)

Query  7    PLTHTEVQKAKATDKDLTLHDGDGLFLLVKTTGKKIWRFRYQLPNSSKRTMISLGAYPAL  66
            +LT+  V+ AK+ DK   L DG+G++LL++T G K WR +Y+++   K  M+S+G YP +
Sbjct  2    ALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEK--MLSIGVYPDV  59

Query  67   SLADAREIRAEKLAMLVRGTDPQTRAGEEAEKLQIAEESIFVNVARKWFELKESHVSAAH  126
            +LADARE R+E   +L  G DP     EE    Q++  + F  +AR W +LK  + S   
Sbjct  60   TLADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRY  119

Query  127  AKDIWRSIEKDILPSIENIPIQELKARTLIQVLEPIKARGALETVRRLVQRINEIMIYAV  186
              +I  ++EKDI+P I + PI E+K+  L++ L  +  RGALE +R++ QR  E+  YA+
Sbjct  120  RDEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAI  179

Query  187  NVGLIDANPASGIGNAFERPKKQHMPTIRPEELPKLMRTIAMSNLSLPTRCLLEWQLLTL  246
              G  D NPA+++++A+  PKK H P + ++ELP ++  +A    S+ T+   +  +LT 
Sbjct  180  VTGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTG  239

Query  247  IRPAEASATAWIEIDLENKQWCIPAERMKAKRDHIVPLSEQALELLEIMRPISGNRQHVF  306
            +R  E   + W +ID+E K W IPAE MK KR HIVPLSEQ + L+  + PIS ++  VF
Sbjct  240  VRTQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHPLVF  299

Query  307  PSRNDPRNHMNSQTANAALKRIGYGGKLVAHGLRSIASTAMNEAGFNADVIEAALAHSDK  366
             +RNDPR+ ++ ++ N A+  +GY G+L +HG+R   ST ++E GFN+  IE  LAH DK
Sbjct  300  IGRNDPRKPISKESINQAIELLGYKGRLTGHGFRHTMSTILHEQGFNSAWIEMQLAHVDK  359

Query  367  NEVRKAYNRSTYLIQRQELMNWWG  390
            N +R +YN++ YL  R+E+M+W +
Sbjct  360  NSIRDTYNHALYLDGRREMMQWYA  383

526) YPD8_1174 in NC_017160


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  245 bits (916),  Expect = 2e-66, Method: Compositional matrix adjust.
 Identities = 157/384 (41%), Positives = 244/384 (64%), Gaps = 2/384 (0%)

Query  7    PLTHTEVQKAKATDKDLTLHDGDGLFLLVKTTGKKIWRFRYQLPNSSKRTMISLGAYPAL  66
            +LT+  V+ AK+ DK   L DG+G++LL++T G K WR +Y+++   K  M+S+G YP +
Sbjct  2    ALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEK--MLSIGVYPDV  59

Query  67   SLADAREIRAEKLAMLVRGTDPQTRAGEEAEKLQIAEESIFVNVARKWFELKESHVSAAH  126
            +LADARE R+E   +L  G DP     EE    Q++  + F  +AR W +LK  + S   
Sbjct  60   TLADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRY  119

Query  127  AKDIWRSIEKDILPSIENIPIQELKARTLIQVLEPIKARGALETVRRLVQRINEIMIYAV  186
              +I  ++EKDI+P I + PI E+K+  L++ L  +  RGALE +R++ QR  E+  YA+
Sbjct  120  RDEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAI  179

Query  187  NVGLIDANPASGIGNAFERPKKQHMPTIRPEELPKLMRTIAMSNLSLPTRCLLEWQLLTL  246
              G  D NPA+++++A+  PKK H P + ++ELP ++  +A    S+ T+   +  +LT 
Sbjct  180  VTGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTG  239

Query  247  IRPAEASATAWIEIDLENKQWCIPAERMKAKRDHIVPLSEQALELLEIMRPISGNRQHVF  306
            +R  E   + W +ID+E K W IPAE MK KR HIVPLSEQ + L+  + PIS ++  VF
Sbjct  240  VRTQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHPLVF  299

Query  307  PSRNDPRNHMNSQTANAALKRIGYGGKLVAHGLRSIASTAMNEAGFNADVIEAALAHSDK  366
             +RNDPR+ ++ ++ N A+  +GY G+L +HG+R   ST ++E GFN+  IE  LAH DK
Sbjct  300  IGRNDPRKPISKESINQAIELLGYKGRLTGHGFRHTMSTILHEQGFNSAWIEMQLAHVDK  359

Query  367  NEVRKAYNRSTYLIQRQELMNWWG  390
            N +R +YN++ YL  R+E+M+W +
Sbjct  360  NSIRDTYNHALYLDGRREMMQWYA  383

527) YPN_2899 in NC_008149


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  245 bits (916),  Expect = 2e-66, Method: Compositional matrix adjust.
 Identities = 157/384 (41%), Positives = 244/384 (64%), Gaps = 2/384 (0%)

Query  7    PLTHTEVQKAKATDKDLTLHDGDGLFLLVKTTGKKIWRFRYQLPNSSKRTMISLGAYPAL  66
            +LT+  V+ AK+ DK   L DG+G++LL++T G K WR +Y+++   K  M+S+G YP +
Sbjct  2    ALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEK--MLSIGVYPDV  59

Query  67   SLADAREIRAEKLAMLVRGTDPQTRAGEEAEKLQIAEESIFVNVARKWFELKESHVSAAH  126
            +LADARE R+E   +L  G DP     EE    Q++  + F  +AR W +LK  + S   
Sbjct  60   TLADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRY  119

Query  127  AKDIWRSIEKDILPSIENIPIQELKARTLIQVLEPIKARGALETVRRLVQRINEIMIYAV  186
              +I  ++EKDI+P I + PI E+K+  L++ L  +  RGALE +R++ QR  E+  YA+
Sbjct  120  RDEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAI  179

Query  187  NVGLIDANPASGIGNAFERPKKQHMPTIRPEELPKLMRTIAMSNLSLPTRCLLEWQLLTL  246
              G  D NPA+++++A+  PKK H P + ++ELP ++  +A    S+ T+   +  +LT 
Sbjct  180  VTGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTG  239

Query  247  IRPAEASATAWIEIDLENKQWCIPAERMKAKRDHIVPLSEQALELLEIMRPISGNRQHVF  306
            +R  E   + W +ID+E K W IPAE MK KR HIVPLSEQ + L+  + PIS ++  VF
Sbjct  240  VRTQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHPLVF  299

Query  307  PSRNDPRNHMNSQTANAALKRIGYGGKLVAHGLRSIASTAMNEAGFNADVIEAALAHSDK  366
             +RNDPR+ ++ ++ N A+  +GY G+L +HG+R   ST ++E GFN+  IE  LAH DK
Sbjct  300  IGRNDPRKPISKESINQAIELLGYKGRLTGHGFRHTMSTILHEQGFNSAWIEMQLAHVDK  359

Query  367  NEVRKAYNRSTYLIQRQELMNWWG  390
            N +R +YN++ YL  R+E+M+W +
Sbjct  360  NSIRDTYNHALYLDGRREMMQWYA  383

528) YPDSF_2598 in NC_009381


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  245 bits (916),  Expect = 2e-66, Method: Compositional matrix adjust.
 Identities = 157/384 (41%), Positives = 244/384 (64%), Gaps = 2/384 (0%)

Query  7    PLTHTEVQKAKATDKDLTLHDGDGLFLLVKTTGKKIWRFRYQLPNSSKRTMISLGAYPAL  66
            +LT+  V+ AK+ DK   L DG+G++LL++T G K WR +Y+++   K  M+S+G YP +
Sbjct  2    ALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEK--MLSIGVYPDV  59

Query  67   SLADAREIRAEKLAMLVRGTDPQTRAGEEAEKLQIAEESIFVNVARKWFELKESHVSAAH  126
            +LADARE R+E   +L  G DP     EE    Q++  + F  +AR W +LK  + S   
Sbjct  60   TLADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRY  119

Query  127  AKDIWRSIEKDILPSIENIPIQELKARTLIQVLEPIKARGALETVRRLVQRINEIMIYAV  186
              +I  ++EKDI+P I + PI E+K+  L++ L  +  RGALE +R++ QR  E+  YA+
Sbjct  120  RDEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAI  179

Query  187  NVGLIDANPASGIGNAFERPKKQHMPTIRPEELPKLMRTIAMSNLSLPTRCLLEWQLLTL  246
              G  D NPA+++++A+  PKK H P + ++ELP ++  +A    S+ T+   +  +LT 
Sbjct  180  VTGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTG  239

Query  247  IRPAEASATAWIEIDLENKQWCIPAERMKAKRDHIVPLSEQALELLEIMRPISGNRQHVF  306
            +R  E   + W +ID+E K W IPAE MK KR HIVPLSEQ + L+  + PIS ++  VF
Sbjct  240  VRTQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHPLVF  299

Query  307  PSRNDPRNHMNSQTANAALKRIGYGGKLVAHGLRSIASTAMNEAGFNADVIEAALAHSDK  366
             +RNDPR+ ++ ++ N A+  +GY G+L +HG+R   ST ++E GFN+  IE  LAH DK
Sbjct  300  IGRNDPRKPISKESINQAIELLGYKGRLTGHGFRHTMSTILHEQGFNSAWIEMQLAHVDK  359

Query  367  NEVRKAYNRSTYLIQRQELMNWWG  390
            N +R +YN++ YL  R+E+M+W +
Sbjct  360  NSIRDTYNHALYLDGRREMMQWYA  383

529) YPZ3_0998 in NC_014029


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  245 bits (916),  Expect = 2e-66, Method: Compositional matrix adjust.
 Identities = 157/384 (41%), Positives = 244/384 (64%), Gaps = 2/384 (0%)

Query  7    PLTHTEVQKAKATDKDLTLHDGDGLFLLVKTTGKKIWRFRYQLPNSSKRTMISLGAYPAL  66
            +LT+  V+ AK+ DK   L DG+G++LL++T G K WR +Y+++   K  M+S+G YP +
Sbjct  2    ALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEK--MLSIGVYPDV  59

Query  67   SLADAREIRAEKLAMLVRGTDPQTRAGEEAEKLQIAEESIFVNVARKWFELKESHVSAAH  126
            +LADARE R+E   +L  G DP     EE    Q++  + F  +AR W +LK  + S   
Sbjct  60   TLADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRY  119

Query  127  AKDIWRSIEKDILPSIENIPIQELKARTLIQVLEPIKARGALETVRRLVQRINEIMIYAV  186
              +I  ++EKDI+P I + PI E+K+  L++ L  +  RGALE +R++ QR  E+  YA+
Sbjct  120  RDEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAI  179

Query  187  NVGLIDANPASGIGNAFERPKKQHMPTIRPEELPKLMRTIAMSNLSLPTRCLLEWQLLTL  246
              G  D NPA+++++A+  PKK H P + ++ELP ++  +A    S+ T+   +  +LT 
Sbjct  180  VTGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTG  239

Query  247  IRPAEASATAWIEIDLENKQWCIPAERMKAKRDHIVPLSEQALELLEIMRPISGNRQHVF  306
            +R  E   + W +ID+E K W IPAE MK KR HIVPLSEQ + L+  + PIS ++  VF
Sbjct  240  VRTQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHPLVF  299

Query  307  PSRNDPRNHMNSQTANAALKRIGYGGKLVAHGLRSIASTAMNEAGFNADVIEAALAHSDK  366
             +RNDPR+ ++ ++ N A+  +GY G+L +HG+R   ST ++E GFN+  IE  LAH DK
Sbjct  300  IGRNDPRKPISKESINQAIELLGYKGRLTGHGFRHTMSTILHEQGFNSAWIEMQLAHVDK  359

Query  367  NEVRKAYNRSTYLIQRQELMNWWG  390
            N +R +YN++ YL  R+E+M+W +
Sbjct  360  NSIRDTYNHALYLDGRREMMQWYA  383

530) intA1 in NC_005810


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  245 bits (914),  Expect = 3e-66, Method: Compositional matrix adjust.
 Identities = 157/382 (42%), Positives = 243/382 (64%), Gaps = 2/382 (0%)

Query  18   PLTHTEVQKAKATDKDLTLHDGDGLFLLVKTTGKKIWRFRYQLPNSSKRTMISLGAYPAL  77
            +LT+  V+ AK+ DK   L DG+G++LL++T G K WR +Y+++   K  M+S+G YP +
Sbjct  2    ALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEK--MLSIGVYPDV  59

Query  78   SLADAREIRAEKLAMLVRGTDPQTRAGEEAEKLQIAEESIFVNVARKWFELKESHVSAAH  137
            +LADARE R+E   +L  G DP     EE    Q++  + F  +AR W +LK  + S   
Sbjct  60   TLADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRY  119

Query  138  AKDIWRSIEKDILPSIENIPIQELKARTLIQVLEPIKARGALETVRRLVQRINEIMIYAV  197
              +I  ++EKDI+P I + PI E+K+  L++ L  +  RGALE +R++ QR  E+  YA+
Sbjct  120  RDEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAI  179

Query  198  NVGLIDANPASGIGNAFERPKKQHMPTIRPEELPKLMRTIAMSNLSLPTRCLLEWQLLTL  257
              G  D NPA+++++A+  PKK H P + ++ELP ++  +A    S+ T+   +  +LT 
Sbjct  180  VTGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTG  239

Query  258  IRPAEASATAWIEIDLENKQWCIPAERMKAKRDHIVPLSEQALELLEIMRPISGNRQHVF  317
            +R  E   + W +ID+E K W IPAE MK KR HIVPLSEQ + L+  + PIS ++  VF
Sbjct  240  VRTQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHPLVF  299

Query  318  PSRNDPRNHMNSQTANAALKRIGYGGKLVAHGLRSIASTAMNEAGFNADVIEAALAHSDK  377
             +RNDPR+ ++ ++ N A+  +GY G+L +HG+R   ST ++E GFN+  IE  LAH DK
Sbjct  300  IGRNDPRKPISKESINQAIELLGYKGRLTGHGFRHTMSTILHEQGFNSAWIEMQLAHVDK  359

Query  378  NEVRKAYNRSTYLIQRQELMNW  399
            N +R +YN++ YL  R+E+M+W
Sbjct  360  NSIRDTYNHALYLDGRREMMQW  381

531) intA in NC_004088


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  245 bits (914),  Expect = 3e-66, Method: Compositional matrix adjust.
 Identities = 157/382 (42%), Positives = 243/382 (64%), Gaps = 2/382 (0%)

Query  18   PLTHTEVQKAKATDKDLTLHDGDGLFLLVKTTGKKIWRFRYQLPNSSKRTMISLGAYPAL  77
            +LT+  V+ AK+ DK   L DG+G++LL++T G K WR +Y+++   K  M+S+G YP +
Sbjct  2    ALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEK--MLSIGVYPDV  59

Query  78   SLADAREIRAEKLAMLVRGTDPQTRAGEEAEKLQIAEESIFVNVARKWFELKESHVSAAH  137
            +LADARE R+E   +L  G DP     EE    Q++  + F  +AR W +LK  + S   
Sbjct  60   TLADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRY  119

Query  138  AKDIWRSIEKDILPSIENIPIQELKARTLIQVLEPIKARGALETVRRLVQRINEIMIYAV  197
              +I  ++EKDI+P I + PI E+K+  L++ L  +  RGALE +R++ QR  E+  YA+
Sbjct  120  RDEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAI  179

Query  198  NVGLIDANPASGIGNAFERPKKQHMPTIRPEELPKLMRTIAMSNLSLPTRCLLEWQLLTL  257
              G  D NPA+++++A+  PKK H P + ++ELP ++  +A    S+ T+   +  +LT 
Sbjct  180  VTGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTG  239

Query  258  IRPAEASATAWIEIDLENKQWCIPAERMKAKRDHIVPLSEQALELLEIMRPISGNRQHVF  317
            +R  E   + W +ID+E K W IPAE MK KR HIVPLSEQ + L+  + PIS ++  VF
Sbjct  240  VRTQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHPLVF  299

Query  318  PSRNDPRNHMNSQTANAALKRIGYGGKLVAHGLRSIASTAMNEAGFNADVIEAALAHSDK  377
             +RNDPR+ ++ ++ N A+  +GY G+L +HG+R   ST ++E GFN+  IE  LAH DK
Sbjct  300  IGRNDPRKPISKESINQAIELLGYKGRLTGHGFRHTMSTILHEQGFNSAWIEMQLAHVDK  359

Query  378  NEVRKAYNRSTYLIQRQELMNW  399
            N +R +YN++ YL  R+E+M+W
Sbjct  360  NSIRDTYNHALYLDGRREMMQW  381

532) intB in NC_014228


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  245 bits (913),  Expect = 4e-66, Method: Compositional matrix adjust.
 Identities = 169/409 (42%), Positives = 259/409 (64%), Gaps = 27/409 (6%)

Query  1    MKLNARQIETAKPKEKNYKLADGGGLYLEVTSRGSKYWRMKYRRPTDKKEDRLAFGVYPT  60
            M L   ++ TAKPK+K YKLADGGG+YL + + GSKYWRMKYR +   KE  L++GVYP 
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAG--KEKMLSIGVYPD  58

Query  61   VSladarakrdeakkllaQGINPKAEQKEAQSESEGVF--TFEHIAREWRA-SNKRWSED  117
            V+LADAR KR EA+KLLA G +P   +KE +   +  +  TFE IAREW+     RWS  
Sbjct  59   VTLADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLR  118

Query  118  HSGRIMRSLEQYIFPHIGALDVRTLRTSHLLTPIKSVDINGKHDVAQRLQQRVTAIMRYA  177
              + I+ ++E+ IFP IG   +  ++   LL +++ ++  G  +  ++++QR   + RYA
Sbjct  119  YRDEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYA  178

Query  178  VQNGILEYSPANDMAGALTIVKSKHHAALPHECLPEFLTRLSCYRGRLITRIAVELTLLT  237
            +  G  +Y+PA D+A+AL+  K  H + L  + LP+FL  L+ Y G +IT+ A ++ +LT
Sbjct  179  IVTGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLT  238

Query  238  FVRSSEMRFARWEEIDLERAVWCVPATRKLIEGVKHSQRGMKMKTEHIVPLSRQAVLLIE  297
             VR+ E+RFARWE+ID+E  +W +PA              MKMK  HIVPLS Q ++L+ 
Sbjct  239  GVRTQELRFARWEDIDFETKLWEIPAE------------VMKMKRPHIVPLSEQVIMLFK  286

Query  298  KLHGLSGDSEVMFPGDHDPKKVMSENTVNNALRAMGYDTKTEVCGHGLRTMARGAMGESG  357
            +L+ +S +  ++F G +DP+K +S +++N+A+  +GY  K  + GHG+R      + E G
Sbjct  287  QLEPISKHHPLVFIGRNDPRKPISKESINQAIELLGY--KGRLTGHGFRHTMSTILHEQG  344

Query  358  L---WSDDAIERQLSHIERNNVRAAYIHTSKHLDERRLMVQWWADYLDA  403
            +   W    IE QL+H+++N++R +Y H+   LD RR M+QW ADY+D+
Sbjct  345  FNSAW----IEMQLAHVDKNSIRDTYNHAL-YLDGRREMMQWYADYIDS  388

533) Msip34_2834 in NC_012972


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  244 bits (912),  Expect = 5e-66, Method: Compositional matrix adjust.
 Identities = 167/400 (42%), Positives = 259/400 (65%), Gaps = 11/400 (2%)

Query  1    MALTDLAVKNADPKPKPYKLTDGNGLYLLIKPSG-KYWRFDYRFNYKRKTLALGVYPDTT  59
            MALTD+ VK A PK KPYKL+DG G+YLLI+ +G KYWR  YRF  K K L++GVYPD T
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  60   LAHAREKLDKARKLLANDPPVDPGENRKAERASRTAKNESCFEVIAREWVASYMLNKSDL  119
            LA+AREK   ARKLLA +   DPGE +K E+ ++     + FE IAREW      ++  L
Sbjct  61   LADAREKRSEARKLLAAGG--DPGEAKKEEKIAQQMSLKNTFEAIAREW-HQLKADRWSL  117

Query  120  H-RQRVFRRLEVFMFPWIGAVSIDQLTAPEILKCIRRIQAQNKIETAHRTLQATGQVFRY  178
            + R+ ++  +E  +FP IG  +I ++ +  +L  +R+++ +  +E  ++  Q  G+VFRY
Sbjct  118  RYRDEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRY  177

Query  179  AVQTGRAIRDVTHDLRGALPSHNVKHMASFTEPEQVAQLLKAIEGFTGSFTVQTALRLAP  238
            A+ TGRA  + + DL +AL++ +  H + F  +++++++L+ + G+TGS+  +TA ++  
Sbjct  178  AIVTGRADYNPAPDLASALATPKKVHFP-FLTANELPHFLNDLAGYTGSIITKTATQIIM  236

Query  239  LVFVRPSELRKARWADIDLEKKEWRFR--VSKTNIDHLVPLSTQAVELLEGIKPVSGHGE  296
            L  VR  ELR ARW DID+E K W +   V K +  H+VPLS Q + L+  + P+S H  
Sbjct  237  LTGVRTQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHP  296

Query  297  WVFMGGHDPKKPMSAAAINAALKRMGYNTQTEITGHGFRAMARTILHERLNFDPYVIEHQ  356
             VF+G +DP+KP+S  +IN A+  +GY+ +  +TGHGFR    TILHE+  F++  IE Q
Sbjct  297  LVFIGRNDPRKPISKESINQAIELLGYKGR--LTGHGFRHTMSTILHEQ-GFNSAWIEMQ  353

Query  357  LAHKVPDALGAAYNRTKFIEQRKDMMQKWADFLTYLVIRA  396
            LAH   +++  +YN++ +++ R++MMQ  AD++  L  R 
Sbjct  354  LAHVDKNSIRDTYNHALYLDGRREMMQWYADYIDSLSSRE  393

534) int in NC_011740


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  244 bits (912),  Expect = 5e-66, Method: Compositional matrix adjust.
 Identities = 164/407 (41%), Positives = 247/407 (61%), Gaps = 27/407 (6%)

Query  25   VLSPKQIENAKPKTNDYKLTDGGSLYLLVRKTGGKYWRMNYRFDGKQVTLALGVYPDVSL  84
             L+  ++  AKPK + YKL+DGG++YLL+   G+KYWRM+YRF GK+  L++GVYPDV+L
Sbjct  2    ALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVTL  61

Query  85   ATARKRRDEARQLLADGRDPREAKKPKK---EDPISPTFESVAREWHSGTMGHPEWKEIT  141
            A AR +R EAR+LLA G DP EAKK  K   + ++  TFE++AREWH   +    W    
Sbjct  62   ADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQ--LKADRWSLRY  119

Query  142  RKKILREMENHLFPAIGSKPIDTLKTRDLMPMLVEMTEKGIGATTSRVKTTMTSIFRYAV  201
            R  I+   E+++FP IG +PI  +K   L+  L  M  +G      +V+     +FRYA+
Sbjct  120  RDEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAI  179

Query  202  QRGIVDYNPAHDLKGAITAPKVRHrpalplerlpellaKTRSYTGRPLTRLAVLFSLHTF  261
              G  DYNPA DL +A+++PK  H P L  + LP++L    +YTG  +T+ A  + + T 
Sbjct  180  VTGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTG  239

Query  262  VRSSELRHARWEEIDIENGLWTIPGQREEIAGVKFSDRGAKMGAAHYVPLSSQAIGVLED  321
            VR+ ELR ARWE+ID+E  LW IP++              KM  +H VPLS Q I ++ +
Sbjct  240  VRTQELRFARWEDIDFETKLWEIPAE------------VMKMKRPHIVPLSEQVIMLFKQ  287

Query  322  IRKISGEYLLVFPGDSNPYKPMSENTVNKALRTMGYDTQTDVCLHGFRAMACSALTESGL  381
            +  IS +  LVF G ++P KP+S +++N+A+  +GY  +  +  HGFR    + L E G+
Sbjct  288  LEPISKHHPLVFIGRNDPRKPISKESINQAIELLGYKGR--LTGHGFRHTMSTILHEQGF  345

Query  382  ---WSRDAVERQMSHQERNEVRAAYVHLAQHMQERRRMMQWWSNYLE  425
               W    +E Q++H ++N +R +Y H A  ++ RR MMQW ++Y++
Sbjct  346  NSAW----IEMQLAHVDKNSIRDTYNH-ALYLDGRREMMQWYADYID  387

535) VAPA_1c46740 in NC_022247


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  243 bits (906),  Expect = 1e-65, Method: Compositional matrix adjust.
 Identities = 168/395 (43%), Positives = 267/395 (68%), Gaps = 7/395 (1%)

Query  1    MALTDTFVRQVKPTGKANGDKYADGAGMYLLVKTAG-KYWRMDYTFAGKRKTLALGTYPE  59
            MALTD  V+  KP +K+   K ADG+GMYLL++T G KYWRM Y FAGK K L++G YP+
Sbjct  1    MALTDIKVKTAKPKDKPY--KLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPD  58

Query  60   VSlakardrraaarellaDGTDPSAAKREKKRALADAAANTFETVAREWLGKTAAKRASG  119
            V+LA AR++R+ AR LLA G DP+ AK+E K A   +  NTFE++AREW    A +++  
Sbjct  59   VTLADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLR  118

Query  120  TQLKVKTWLEKDVLPFIGKMPMSTIGPRDILERVVRKLEARGAIDTAHRVKQLCGQVFRF  179
             +  +   +EKD++P+IGK P++ I P  +LE  +RK+E RGA++  ++V+Q CG+VFR+
Sbjct  119  YRDEIIDTFEKDIFPYIGKRPIAEIKPMKLLE-ALRKMEKRGALEKMRKVRQRCGEVFRY  177

Query  180  AVVSGLAERDVTADLSEALASKATKHFAAITEPKRVGDLMRSIHAYSGHPTTVAALKLSP  239
            A+V+G A+ + ++DL+ ALA+    HF+ +T ++ + +++  + +Y+G   T +A ++  
Sbjct  178  AIVTGRADYNPAPDLASALATPKKVHFPFLT-ANELPHFLNDLAGYTGSIITKTATQIIM  236

Query  240  LLFVRPGELRTAEWAEIDLDAAEWRIAGPKMKMKVDHVVPLATQAVEILRNLHPITGHGR  299
            L  VR  ELR A W +ID+++  W I++  MKMK  H+VPL+ Q + ++++L+PI+ H  
Sbjct  237  LTGVRTQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHP  296

Query  300  FVFPSIRTGERPMSENTINAALRGMGYSAEVHTAHGFRATARTIMDEVLGERVDFIEHQL  359
            +VF +     +P+S ++IN A+  +GY + + T+HGFR T  TI++E  G     IE QL
Sbjct  297  LVFIGRNDPRKPISKESINQAIELLGYKGRL-TGHGFRHTMSTILHEQ-GFNSAWIEMQL  354

Query  360  SHVVRDTNGRAYNRTAHLPARREMMQRWADYLDKL  394
            +HV +++   +YN++  L +RREMMQ+ ADY+D L
Sbjct  355  AHVDKNSIRDTYNHALYLDGRREMMQWYADYIDSL  389

536) bgla_1g31710 in NC_015381


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  242 bits (903),  Expect = 2e-65, Method: Compositional matrix adjust.
 Identities = 165/393 (42%), Positives = 250/393 (64%), Gaps = 6/393 (1%)

Query  1    MPLTDTAIRNAKPADKPVRLFDGGGLYLEIAPSGGKWWRLKYRFGGKEKRYSLGVYPDVT  60
            M+LTD  ++ AKP DKP +L DGGG+YL I  +G+K WR+KYRF+GKEK  S+GVYPDVT
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   LAIARKKRDEAREKLAAGIDPGEAKKAEKRASLLAAAHSFEVVARGWMAERKTTVEPAQH  120
            LA AR KR EAR  LAAG DPGEAKK EK A  ++  ++FE +AR W   +        +
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  121  DKTLARMENDVFPWLGKRPIAEIDAPEILVVLKRVDGRGARFTAHRIRSEISRVFRYGIK  180
            D  +   E+D+FP +GKRPIAEI +  +L  L++++ RGA    +++R   + VFRY+I 
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  181  EGHCKADPARDLVDAIPPAQTTHFASITEPEKVAEMLRAFDGFTGTFPVLCALRLAPMLF  240
             G+   +PA DL  A++ ++  HF+ +T  E +++ L  + G+TG++    A ++  +  
Sbjct  181  TGRADYNPAPDLASALATPKKVHFPFLTANE-LPHFLNDLAGYTGSIITKTATQIIMLTG  239

Query  241  VRPGELRKAQWSQFELDKGEWRYF--VNKTKTDHLVPLATQAVAILRELHALTGDGVYVF  298
            VR  ELR A+W +++++   W     V K K  H+VPL+ Q + ++++L++++ +   VF
Sbjct  240  VRTQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHPLVF  299

Query  299  PGARDRNRPMSEAAINAALRRLGYDTRTEITGHGFRAMARTILHEELEEKPEVIEHQLAH  358
             G  D  +P+S  +IN A+  LGY  R  +TGHGFR    TILHE+   ++  IE QLAH
Sbjct  300  IGRNDPRKPISKESINQAIELLGYKGR--LTGHGFRHTMSTILHEQ-GFNSAWIEMQLAH  356

Query  359  TVPDSLGRAYNRTKFIKARRSMMQQWADYLDKL  391
               +S+  +YN++ ++ +RR MMQ  ADY+D L
Sbjct  357  VDKNSIRDTYNHALYLDGRREMMQWYADYIDSL  389

537) SJA_C1-03340 in NC_014006


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  242 bits (902),  Expect = 3e-65, Method: Compositional matrix adjust.
 Identities = 169/409 (42%), Positives = 259/409 (64%), Gaps = 27/409 (6%)

Query  1    MALSSLALSKAKPREKPYKLADGHGLYLLITPGGGRYWRMNYRFGGKAKTMAMGVFPLIT  60
            MAL+ + +  AKP++KPYKLADG G+YLLI   G++YWRM+YRF+GK K +++GV+P +T
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   laearekrdaarkllaaGSDPtatrkeaeareafeattGFRTVAEEWLAKREREGLGAVT  120
            LA+AREKR  ARKLLAAG+DP  ++KE    +       F ++A EW             
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQ-----------  109

Query  121  LGKVKWLLEF-----------AYPSLGNRKISEITSMELLAVLRQVEGRGRHETARRLRS  169
            L   +W L +            +P +G+R I+EI +M LL  LR++E RG  E  R++R 
Sbjct  110  LKADRWSLRYRDEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQ  169

Query  170  VCGRVFRYAIATGRAEHDLSANLRDALTTPKVKHLAAITNSQQVGPLMRAIETFDGHAVT  229
             CG VFRYAI TGRA+ + +++L  AL+TPK  H++ +T ++++  ++  +  + G  +T
Sbjct  170  RCGEVFRYAIVTGRADYNPAPDLASALATPKKVHFPFLT-ANELPHFLNDLAGYTGSIIT  228

Query  230  RAALRLAPHVFVRPGELRHAEWAEIDFDKALWCIPAEKMKMRRPHRVPLSRQSLAIFASI  289
            ++A ++     VR  ELR A W +IDF+  LW IPAE MKM+RPH VPLS Q + +F  +
Sbjct  229  KTATQIIMLTGVRTQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQL  288

Query  290  REITGTGKFVFPGFQSLKRPMSENALNGALRRLGYSGDEMTSHGFRAMASTLLNEMGRWH  349
              I+    +VF G +  ++P+S +++N A+  LGY G  +T+HGFR   ST+L+E G  +
Sbjct  289  EPISKHHPLVFIGRNDPRKPISKESINQAIELLGYKG-RLTGHGFRHTMSTILHEQG-FN  346

Query  350  PDAIERQLAHAEADAVRRAYARGEYWDERVAMMQAW-SDYLDDLAGKPP  397
            +  IE QLAH + +++R +Y ++ Y D R  MMQ W +DY+D L+++ +
Sbjct  347  SAWIEMQLAHVDKNSIRDTYNHALYLDGRREMMQ-WYADYIDSLSSRES  394

538) int in NC_015761


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  241 bits (901),  Expect = 4e-65, Method: Compositional matrix adjust.
 Identities = 173/413 (42%), Positives = 256/413 (62%), Gaps = 27/413 (6%)

Query  6    MSLTDTAIRKLRPTDKPFKLGDSAGLYLLIKPNGSKLWYMKYRIDGKEKKLAFGPYPDVS  65
            M+LTD  ++  +P DKP+KL+D++G+YLLI+ NGSK W MKYR+ GKEK L++G YPDV+
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  66   LLTARQLRDAARIKMREGVDPSVDKK---IAQQKKKNGQTFRQIAINWHA-DHRRWSEHY  121
            L  AR+ R  AR  +  G DP+  KK   IAQQ   + +TF  IA +WH     RWS +Y
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLK-NTFEAIAREWHQLKADRWSLRY  119

Query  122  ATTIRRRLEMYIFPDIGDRYIDQIVTEDLLFTLRKVENKGFLEITARLKNYVTEIMRYAV  181
               I   +E  IFP IG R I +I    LL +LRK+E++G LE   ++++   E+ RYA+
Sbjct  120  RDEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAI  179

Query  182  KKQLIRSNPALDLDGEFTPPETQHYPAlpleklpellSRTDNYSGRLLTRYALKLSLLFF  241
                   NPA DL + ++ P   H+P L  + LP++L+    Y+G ++T+ A ++ +L  
Sbjct  180  VTGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTG  239

Query  242  VRSSELRFARWSEIDWQQKLWIIPEEREQIENVRFSHRGTKMKTQHIVPLSDQAMAILKQ  301
            VR+ ELRFARW +ID + KLW IP E              KMK  HIVPLS+Q + ++KQ
Sbjct  240  VRTQELRFARWEDIDFETKLWEIPAE------------VMKMKRPHIVPLSEQVIMLFKQ  287

Query  302  TEALSGHLAFIFPGEYDQDKCMSDNTISKALRVMGYDTRKEICGHGFRAMACSALSESGL  361
             E++S H +++F G  D  K +S ++I++A+ ++GY  R  + GHGFR    + L E G+
Sbjct  288  LEPISKHHPLVFIGRNDPRKPISKESINQAIELLGYKGR--LTGHGFRHTMSTILHEQGF  345

Query  362  ---WSKEAIEKQMSHQERNSVRAAYIHKAEYLEERINMMQWWADYLDANTKRH  411
               W    IE Q++H ++NS+R +Y H A YL+ R +MMQW ADY+D+ + R+
Sbjct  346  NSAW----IEMQLAHVDKNSIRDTYNH-ALYLDGRREMMQWYADYIDSLSSRE  393

539) bglu_1g28410 in NC_012724


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  241 bits (899),  Expect = 5e-65, Method: Compositional matrix adjust.
 Identities = 164/393 (42%), Positives = 250/393 (64%), Gaps = 6/393 (1%)

Query  17   VPLTDTAIRNAKPADKPLRLFDGGGLYLEIAPSGGKWWRLKYRFGGKEKRYSLGVYPDVT  76
            ++LTD  ++ AKP DKP +L DGGG+YL I  +G+K WR+KYRF+GKEK  S+GVYPDVT
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  77   LAIARKKRDEAREKLAAGIDPGEAKKAEKRAGLLAAAHSFEVVARGWMAERKTTVEPAQH  136
            LA AR KR EAR  LAAG DPGEAKK EK A  ++  ++FE +AR W   +        +
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  137  DKTLARMENDVFPWLGKRPIAEIDAPEILVVLKRVDGRGARFTAHRIRSEISRVFRYGIK  196
            D  +   E+D+FP +GKRPIAEI +  +L  L++++ RGA    +++R   + VFRY+I 
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  197  EGHCKADPARDLVDAIPPAQTTHFASITEPEKVAEMLRAFDGFTGTFPVLCALRLAPMLF  256
             G+   +PA DL  A++ ++  HF+ +T  E +++ L  + G+TG++    A ++  +  
Sbjct  181  TGRADYNPAPDLASALATPKKVHFPFLTANE-LPHFLNDLAGYTGSIITKTATQIIMLTG  239

Query  257  VRPGELRKAQWSQFELDKGEWRYF--VNKTKTDHLVPLATQAVAILRELHALTGDGVYVF  314
            VR  ELR A+W +++++   W     V K K  H+VPL+ Q + ++++L++++ +   VF
Sbjct  240  VRTQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHPLVF  299

Query  315  PGARDRNRPMSEAAINAALRRLGYDTRTEITGHGFRAMARTILHEELEEKPEVIEHQLAH  374
             G  D  +P+S  +IN A+  LGY  R  +TGHGFR    TILHE+   ++  IE QLAH
Sbjct  300  IGRNDPRKPISKESINQAIELLGYKGR--LTGHGFRHTMSTILHEQ-GFNSAWIEMQLAH  356

Query  375  TVPDSLGRAYNRTKFIKARRSMMQQWADYLDKL  407
               +S+  +YN++ ++ +RR MMQ  ADY+D L
Sbjct  357  VDKNSIRDTYNHALYLDGRREMMQWYADYIDSL  389

540) Bcenmc03_2483 in NC_010508


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  241 bits (898),  Expect = 6e-65, Method: Compositional matrix adjust.
 Identities = 162/395 (42%), Positives = 247/395 (63%), Gaps = 6/395 (1%)

Query  1    MPLTDTAIRNAKPADKPVRLFDGGGLYLEVAPSGGKWWRLKYRFGGKEKRYSLGVYPEVT  60
            M+LTD  ++ AKP DKP +L DGGG+YL +  +G+K WR+KYRF+GKEK  S+GVYP+VT
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   LATARKKRDEAREKLAAGIDPGKAKKAEKRASLLAAAHSFEVVARGWMAERKTTVEPAQH  120
            LA AR KR EAR  LAAG DPG AKK EK A  ++  ++FE +AR W   +        +
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  121  AKTLARMENDVFPWLGKRPIAEIDAPEILAVLKRVDGRGARFTAHRIRSEISRVFRYGIK  180
               +   E+D+FP +GKRPIAEI +  +L  L++++ RGA    +++R   + VFRY+I 
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  181  EGHCKADPARDLVDAIPPAQTTHFASITEPEKVGEMLRAFDGFTGTFPVLCALKLAPMLF  240
             G+   +PA DL  A++ ++  HF+ +T  E + + L  + G+TG++    A ++  +  
Sbjct  181  TGRADYNPAPDLASALATPKKVHFPFLTANE-LPHFLNDLAGYTGSIITKTATQIIMLTG  239

Query  241  VRPGELRKAEWAQFDLDKGEWRYF--VNKTKTDHLVPLAAQAVTILRELHALTGEGVYVF  298
            VR  ELR A W ++D++   W     V K K  H+VPL+ Q + ++++L++++ +   VF
Sbjct  240  VRTQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHPLVF  299

Query  299  PGARDRNRPMSEAAINAALRRLGYDTRTEITGHGFRAMARTILHEELEEKPEVIEHQLAH  358
             G  D  +P+S  +IN A+  LGY  R  +TGHGFR    TILHE+   ++  IE QLAH
Sbjct  300  IGRNDPRKPISKESINQAIELLGYKGR--LTGHGFRHTMSTILHEQ-GFNSAWIEMQLAH  356

Query  359  TVPDSLGRAYNRTKFIKARRSMMQQWADYLDKLKA  393
               +S+  +YN++ ++ +RR MMQ  ADY+D L +
Sbjct  357  VDKNSIRDTYNHALYLDGRREMMQWYADYIDSLSS  391

541) Dsui_0218 in NC_016616


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  241 bits (898),  Expect = 7e-65, Method: Compositional matrix adjust.
 Identities = 167/396 (43%), Positives = 253/396 (64%), Gaps = 9/396 (2%)

Query  4    PLTDTKVRNAKPAEKPYKLQDGQGLYLDVRPSGAKFWRYRYWITPEKDGIYTIGEYPVVS  63
            +LTD KV+ AKP +KPYKL DG G+YL +  +G+K+WR +Y+++  K+ + +IG YP V+
Sbjct  2    ALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFA-GKEKMLSIGVYPDVT  60

Query  64   LSDarrerewareqaKQGINPTHAKEAERLRRMGEHANTFEAVAREWIDQNRNHWTEKYL  123
            L+DAR  R  AR     G +P +AK  E++ +     NTFEA+AREW + + ++W+ +Y 
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  124  YQVERFLGNDVFPKIGALPIRMVTSAHLLGIIRTVEERGAKSIAVLIRQWSGQIFRYAVA  183
             ++   + +D+FP IG  PI  + +  LL  +R +E RGA      +RQ+ G++FRYA+ 
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  184  TLRADSDPSAPLRGAIKKDPVRHNPPLSKDEIPVMLNKLQKYGGYRGTVLATKLMLYTFV  243
            T RAD +P++ L +A+      H P L+ +E+P  LN L  Y G   T  AT++++ T V
Sbjct  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV  240

Query  244  RTVELRKAEWTEFDLEGGEWRVPADRMKMKKQMKVGESHIVPLSRQALEVLKELKTLSGG  303
            RT ELR A W ++D+E   W +PA+ MKMK+      +HIVPLS Q + ++K+L  +S  
Sbjct  241  RTQELRFARWEDIDFETKLWEIPAEVMKMKR------PHIVPLSEQVIMLFKQLEPISKH  294

Query  304  RKFLFPNLRTPDTCMTATTINKALERMGYAGKFSGHGFRATASTMLHELGWNEKAIERQL  363
            + ++F     P   ++  +IN+A+E +GY G+++GHGFR T ST+LHE G N   IE QL
Sbjct  295  HPLVFIGRNDPRKPISKESINQAIELLGYKGRLTGHGFRHTMSTILHEQGFNSAWIEMQL  354

Query  364  AHAERNKVKAAYNHAEYLPERREMMQAW-SDWIDEL  398
            AH ++N ++ +YNHA YL  RREMMQ W +D ID L
Sbjct  355  AHVDKNSIRDTYNHALYLDGRREMMQ-WYADYIDSL  389

542) Tint_0383 in NC_014153


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  240 bits (897),  Expect = 8e-65, Method: Compositional matrix adjust.
 Identities = 162/395 (42%), Positives = 263/395 (67%), Gaps = 8/395 (2%)

Query  6    LTDAALRRAKPTDKlqrlrdgdglylllrpdgKRWWRFDYRYGGKDKTLSVGVYPDVTLA  65
            LTD  ++ AKP DK  +L DG+G+YLL+  +G + WR  YR++GK+K LS+GVYPDVTLA
Sbjct  3    LTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVTLA  62

Query  66   RARQRADEIRQQLLDGIDPSIARKA-KVTGVVAGEVSDSFEIIAREWHAGRAPTLSGNTS  124
             AR++  E R+ L  G DP+ A+K  K++  ++  + ++FE IAREWH  +A   S    
Sbjct  63   DAREKRSEARKLLAAGGDPGEAKKEEKIAQQMS--LKNTFEAIAREWHQLKADRWSLRYR  120

Query  125  KNILLRLQNNAFPYIGQKSVRELRAPDVLDVLRRIEERGLGETARRVHQLIAQVMRYAVA  184
             +I+  ++++ FPYIG++++ E+++  +L+ LR++E RG  E  R+V+Q  ++V RYA+ 
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  185  TGRADADPTPALRGALKPVMVRHHAAVIEPAELGAMLRAFDGYTGGVVVRTALQLQVMLF  244
            TGRAD +P+P L +AL     + H + + + EL   L  + GYTG+++ +TA Q+ ++  
Sbjct  181  TGRADYNPAPDLASALATPK-KVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTG  239

Query  245  VRPGELRHMEWAELDLGGAQWRIPGEKMKMREPHIVPLPRQAVALLKDLQPFSCRSRYVF  304
            VR  ELR   W ++D+    W IP+E MKM+ PHIVPL+ Q + L+K+L+P+S +   VF
Sbjct  240  VRTQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHPLVF  299

Query  305  PSPRSKDRPMSENAVNVALRTLGYDRDTVTGHGFRATARTILDEKLRYRVEVIEMQLAHA  364
             +     +P+S +++N A+  LGY ++ +TGHGFR T  TIL+E+  +    IEMQLAH 
Sbjct  300  IGRNDPRKPISKESINQAIELLGY-KGRLTGHGFRHTMSTILHEQ-GFNSAWIEMQLAHV  357

Query  365  VRDPLGRAYNRTKYLEERKDMMQAW-ADYLGKIRA  398
             ++++  +YN++ YL+ R++MMQ W ADY++ + +
Sbjct  358  DKNSIRDTYNHALYLDGRREMMQ-WYADYIDSLSS  391

543) Dtpsy_1577 in NC_011992


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  239 bits (893),  Expect = 1e-64, Method: Compositional matrix adjust.
 Identities = 172/398 (44%), Positives = 251/398 (64%), Gaps = 12/398 (3%)

Query  2    LSDTACRAAKAQEKPAKLSDSGGLYLLVNQAG-KYWRWDYRHAGKRKTLALGVYPGVTLA  60
            L+D   ++AK+++KP KL+D+GG+YLL+N  G KYWR  YR AGK K L++GVYP+VTLA
Sbjct  3    LTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVTLA  62

Query  61   TarkkrddarallVEGVDPGEARKAQKAALFADDENTFEAIMREWHALQAPKWSPRYAEK  120
             AR KR +AR LL  G DPGEA+K +K A      NTFEAI REWH L+A +WS RY + 
Sbjct  63   DAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYRDE  122

Query  121  MLARFVQNVFPYMGSVPIADMTPSALLAVVRKLEARGLGEVPSRTLSECGQVMRYAVATG  180
            ++  F +++FPY+G  PIA++ P  LL  +RK+E RG  E   +    CG+V RYA+ TG
Sbjct  123  IIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIVTG  182

Query  181  RAERDITADLRGALAPMRTKHLAAVTEPEKVGPLLRVLDDYDGTATVRCALRLAPLLFVR  240
            RA+ + ++DL +ALA  +  H++ +T  E +  +L  L +Y G+   + A ++  L  VR
Sbjct  183  RADYNPAPDLASALATPKKVHFPFLTANE-LPHFLNDLAGYTGSIITKTATQIIMLTGVR  241

Query  241  PGELRSMRWADIDFEACEWRYL--VTKTQTRHIVPLSRQTLAILEEIRPITGRGVYVFPS  298
              ELR  RW DIDFE+  W     V K +  HIVPLS Q + ++ ++ PI+ +   VF +
Sbjct  242  TQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHPLVFIG  301

Query  299  ARTMSPAAKSQRPMSDNAILAALRRAGIDKDEMTGHGFRAMARTILDEVLGFRPDFIEHQ  358
                     +++P+S ++I  A+   G  K+ +TGHGFR    TIL+E  GF +  IE Q
Sbjct  302  ------RNDPRKPISKESINQAIELLGY-KGRLTGHGFRHTMSTILHEQ-GFNSAWIEMQ  353

Query  359  LAHAVRDPNGRAYNRTAHLPARHEMMQQWADYLDKLKT  396
            LAH  +++   +YN++  L +R+EMMQ  ADY+D L +
Sbjct  354  LAHVDKNSIRDTYNHALYLDGRREMMQWYADYIDSLSS  391

544) EbC_39600 in NC_014306


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  239 bits (893),  Expect = 2e-64, Method: Compositional matrix adjust.
 Identities = 173/408 (43%), Positives = 258/408 (64%), Gaps = 27/408 (6%)

Query  1    MKLNARLVDTAKPKEKTYKMADGGGLYLEVTTKGSKYWRMKYRRPADKKEDRLAFGVWPT  60
            M L    V TAKPK+K YK+ADGGG+YL + T+GSKYWRMKYR ++  KE  L++GV P 
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAG--KEKMLSIGVYPD  58

Query  61   VTLaearakrdeakkMLGQGIDPkaeqkeaqaeNAGAY--TFETIAREWHA-SNKRWSDD  117
            VTLA+AR KR EA+K+L+ G DP   +KE +  +  +   TFE+IAREWH     RWS  
Sbjct  59   VTLADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLR  118

Query  118  HRSRIMRYLELYIFPHIGLADVRRLKTSQLLAPIKSVDASGRHDVAQRLQQRVTAIMRYA  177
             R  I+  +E  IFP IG   +  +K  +LL +++ ++  G  +  ++++QR   + RYA
Sbjct  119  YRDEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYA  178

Query  178  VQNDYIESNPAVDMAGALSTVKARHYPALPFSGFPEFLERLAAYRGRIMTRIAVELSLLT  237
            +  +  + NPA D+A+AL+T K  H+P L  + +P+FL+ LA+Y G I+T+ A ++ +LT
Sbjct  179  IVTGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLT  238

Query  238  FVRSSELRFARWDEFDFERALWRVPAQRKEIEGVRYSHRGMKMKEEHLVPLSSQVLALLE  297
             VR+ ELRFARW+++DFE  LW +PA+             MKMK  H+VPLS QV+ L+ 
Sbjct  239  GVRTQELRFARWEDIDFETKLWEIPAE------------VMKMKRPHIVPLSEQVIMLFK  286

Query  298  KLKQLSGDNERLFPGDHDPKKVMSENTVNNALRAMGYDTKTEVCGHGFRTMARGALGESG  357
            +L  +S ++  +F G +DP+K +S +++N+A+  +GY  K  + GHGFR      L E G
Sbjct  287  QLEPISKHHPLVFIGRNDPRKPISKESINQAIELLGY--KGRLTGHGFRHTMSTILHEQG  344

Query  358  L---WSDDAIERQLSHSERNNVRAAYIHTSEHLDERCLMVQWWADYLS  402
            +   W    IE QL+H ++N++R +Y H+   LD R  M+QW ADY+ 
Sbjct  345  FNSAW----IEMQLAHVDKNSIRDTYNHAL-YLDGRREMMQWYADYID  387

545) PC1_0723 in NC_012917


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  238 bits (889),  Expect = 3e-64, Method: Compositional matrix adjust.
 Identities = 154/384 (41%), Positives = 245/384 (64%), Gaps = 2/384 (0%)

Query  7    PLTHTEVSKARTPDKELSLHDGDGLFLLIKPSGKKLWRFRYLRPDTKKRTTLSFGSYPAL  66
            +LT+  V  A+  DK   L DG+G++LLI+ +G K WR +Y R   K +  LS+G YP +
Sbjct  2    ALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKY-RFAGKEKM-LSIGVYPDV  59

Query  67   SLAEARQLRAEHLALLAKGIDPqqkvakeeeeaqiaveSIFINVARNWFTLKQTKVSADH  126
            +LA+AR+ R+E   LLA G DP +    E    Q+++ + F  +AR+W  LK  + S   
Sbjct  60   TLADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRY  119

Query  127  AKDIWRSLEKDVLPAIENIPVQEIKARTLIQALEPIKARGALETVRRLVQRINEIMVYAV  186
              +I  ++EKD++P I + P+ EIK+  L++AL  +  RGALE +R++ QR  E+  YA+
Sbjct  120  RDEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAI  179

Query  187  NTGLIDANPASGIGMAFERPKKQHMPTIRPEEIPKLMRTIAMSNLSIPTRCLLEWQLLTL  246
             TG  D NPA++++ A+  PKK H P + ++E+P ++  +A    SI T+   +  +LT 
Sbjct  180  VTGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTG  239

Query  247  IRPAEASATAWAEIDIEKRTWSIPAERMKAKRDHIVPLSDQALELLDIMRPISGNREHVF  306
            +R  E   + W +ID+E + W IPAE MK KR HIVPLS+Q + L+  + PIS ++  VF
Sbjct  240  VRTQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHPLVF  299

Query  307  PSRNDPKKPMNSQTANAALKRIGYGGKLVAHGLRSIASTAMNEAGFNPDVIEAALAHIES  366
             +RNDP+KP++ ++ N A+  +GY G+L +HG+R   ST ++E GFN+  IE  LAH++ 
Sbjct  300  IGRNDPRKPISKESINQAIELLGYKGRLTGHGFRHTMSTILHEQGFNSAWIEMQLAHVDK  359

Query  367  NDVRKAYNRSTYLEHRKELMDWWG  390
            N +R +YN++ YL+ R+E+M+W +
Sbjct  360  NSIRDTYNHALYLDGRREMMQWYA  383

546) SLG_25940 in NC_015976


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  238 bits (888),  Expect = 4e-64, Method: Compositional matrix adjust.
 Identities = 171/394 (44%), Positives = 259/394 (66%), Gaps = 11/394 (2%)

Query  2    LTYIQINAAKPRDKAWNLSDSQGLYLIIQPNGSKLWRFRYRFLDRQKTLHLGGWPQISLA  61
            LT I++++AKP+DK+ +L+D+ G+YL+I+ NGSK WR +YRF +++K L +G  P+++LA
Sbjct  3    LTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVTLA  62

Query  62   DARTRRDDAKKLVANGIDPALEkkrariaakhaaaNTFEAVAQEW-LVKCERDGLAPVTI  120
            DAR +R +A+KL+A G DP+  KK  +IA + +  NTFEA+A+EW  +K +R +L     
Sbjct  63   DAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSL-RYRD  121

Query  121  EKISWLLDKAYPMIGNIPIAQITPHEALAVLRKIEATGAYESARRMRSVLSRVFRYGVAT  180
            E I  +    +P IG+ PIA+I P   L  LRK+E  GA E  R++R   + VFRY++ T
Sbjct  122  EIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIVT  181

Query  181  VRCDKDVAADLRGAIAVPKVKHFAAITRPSEVGTLLRAIDGYTGHKVTVMAMRLSPHVLL  240
             R D + A+DL +A+A PK  HF+ +T ++E+  +L  + GYTG  +T  A ++     +
Sbjct  182  GRADYNPAPDLASALATPKKVHFPFLT-ANELPHFLNDLAGYTGSIITKTATQIIMLTGV  240

Query  241  RPGELRQAEWTDIDFDEAIWFIPAERMKMRRPHRVPLSRQVIEMLKELHEHTHWWKYLFP  300
            R  ELR A W DIDF+  +W IPAE MKM+RPH VPLS QVI ++K+L+  +     +F 
Sbjct  241  RTQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHPLVFI  300

Query  301  CLGKPRKAMSENAVNQGLRKLGYTTDQMTAHGFRAMAATLLNEMG---EWNPDAIERQLA  357
                PRK++S +++NQ++  LGY  +++T+HGFR   +T+L+E G    W    IE QLA
Sbjct  301  GRNDPRKPISKESINQAIELLGY-KGRLTGHGFRHTMSTILHEQGFNSAW----IEMQLA  355

Query  358  HVDTNQVRRAYARGEYWDERVRMMQYWSDYLDTL  391
            HVD N +R +Y ++ Y D R  MMQ  +DY+D+L
Sbjct  356  HVDKNSIRDTYNHALYLDGRREMMQWYADYIDSL  389

547) LPO_0155 in NC_018139


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  238 bits (886),  Expect = 5e-64, Method: Compositional matrix adjust.
 Identities = 167/389 (43%), Positives = 252/389 (65%), Gaps = 7/389 (1%)

Query  6    EITFRNAKPEAKSYKISDEKGLFMHVTPQGNKYWRLKYRFDGKEKLLALGVYDDVTlaka  65
            +I  + AKP  K+YK++D  G+++ +  +G+KYWR+KYRF GKEK+L++GVY DVTLA A
Sbjct  5    DIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVTLADA  64

Query  66   rekrdearrllaDGIDPGEHKKVMKQVANERSANSFEVVAREWFVKYSSNWVKSHADKIM  125
            REKR EAR+LLA G DPGE KK  K   +    N+FE +AREW    +  W     D I+
Sbjct  65   REKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYRDEII  124

Query  126  QRFLRDIFPWIGNKPITEVTPPVLLSVIRRIEERGALETAHRALSNCGQVFRYAIATGRA  185
            + F +DIFP IG++PI+E+ P  LL  +R++E RGALE  ++    CG+VFRYAI TGRA
Sbjct  125  DTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIVTGRA  184

Query  186  ERDSSQDLRGALPPVKTKHFAAQTDPKRFGDLLKIFDDYQGSLIVRSALRLAPLFFVRPG  245
            + +++ DL +AL+  K  HF+  T ++ + ++L+ + +Y GS+I ++A ++  L  VR  
Sbjct  185  DYNPAPDLASALATPKKVHFPFLT-ANELPHFLNDLAGYTGSIITKTATQIIMLTGVRTQ  243

Query  246  ELRHAQWEDFDFDKAQWSFI--VTKTNTPHIVPLATQALEILAELQPLTGNSTYVFPSAR  303
            ELR A+WED+DF+   W +   V K + PHIVPL+ Q + ++ +L+P++ +   VF +  
Sbjct  244  ELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHPLVFIGRN  303

Query  304  SNSRPMSDNAILAALRRLGISKEEASGHGFRATARTLLDEVLRVRPDIIEHQLAHAVRDP  363
               +P+S ++I  A+  LG  K   +GHGFR T  T+L+E     +  IE QLAH  +++
Sbjct  304  DPRKPISKESINQAIELLGY-KGRLTGHGFRHTMSTILHEQ-GFNSAWIEMQLAHVDKNS  361

Query  364  NGRAYNRTAHLIERKKMMQDW-ADYLDRL  391
               +YN++  L  R+ MMQ W ADY+D L
Sbjct  362  IRDTYNHALYLDGRREMMQ-WYADYIDSL  389

548) EcolC_1063 in NC_010468


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  237 bits (885),  Expect = 6e-64, Method: Compositional matrix adjust.
 Identities = 160/389 (42%), Positives = 254/389 (66%), Gaps = 2/389 (0%)

Query  7    PLTNTEVLRAKALEKDLTLHDGDGLFLLVKTNGKKLWRFRYQRPATKQRTMMGLGAFPal  66
            +LT+  V  AK+ +K   L DG+G++LL++TNG K WR +Y R A K++ M+++G +P +
Sbjct  2    ALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKY-RFAGKEK-MLSIGVYPDV  59

Query  67   sladarrlradylsllaNGIDPqiqaeiaeeqqqiaqDSIFSTVAANWFQLKSKSVTPDY  126
            +LADAR  R++   LLA G DP          QQ++  + F ++A +W QLK+   +  Y
Sbjct  60   TLADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRY  119

Query  127  AKDIWRSLEKDVFPAVGEMPVQQIKARTLVEALEPVKARGALETVRRLVQRINEIMIYAV  186
              +I  ++EKD+FP +G  P+ +IK+  L+EAL  +  RGALE +R++ QR  E+  YA+
Sbjct  120  RDEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAI  179

Query  187  NTGLIDANPASGVGMAFEKPKKQNMPTLRPEELPKLMRSLVMSNLSIPTRCLIEWQLLTL  246
             TG  D NPA++++ A+  PKK + P L ++ELP ++  L     SI T+   +  +LT 
Sbjct  180  VTGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTG  239

Query  247  VRPSEASSTRWEEIDLHAKLWTIPAERMKAKREHIIPLSSQALEILNVMKPISAHREYVF  306
            VR  E   +RWE+ID+++KLW IPAE MK KR HI+PLS Q + +++ + PIS H+  VF
Sbjct  240  VRTQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHPLVF  299

Query  307  PSRNDPKKPMNSQTANAALKRIGFGGKLVAHGLRSIASTAMNEAGLNPDVIESALAHSDK  366
             +RNDP+KP++ ++ N A+  +G+ G+L +HG+R   ST ++E G+N+  IE  LAH DK
Sbjct  300  IGRNDPRKPISKESINQAIELLGYKGRLTGHGFRHTMSTILHEQGFNSAWIEMQLAHVDK  359

Query  367  NEVRKAYNRSTYLVQRIELMDWWGEYVKN  395
            N +R +YN++ YL  R E+M+W ++Y+ +
Sbjct  360  NSIRDTYNHALYLDGRREMMQWYADYIDS  388

549) G432_12985 in NC_020561


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  237 bits (884),  Expect = 7e-64, Method: Compositional matrix adjust.
 Identities = 159/395 (41%), Positives = 249/395 (64%), Gaps = 12/395 (3%)

Query  1    MALKDTEIRAFRPLDKPYRKADSGGLYLEVFPNGSKLWRWKFRIAGKEKRLALGAYPAVS  60
            MAL D  +++ +P DKPY+ AD+GG+YL +  NGSK WR K+R+AGKEK L++G YP V+
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   LKEARATRDDEKAKLLKGVDPALDRKRGKVAAKISAANTFAAVAHEYIDTKMVG-ESRAD  119
            L +AR  R + +  L  G DP+  +K  K+A ++S  NTF A+A+E  + K      R  
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  120  ATISKARWFLEQLEPAIGKMPIAEVDQQMLLAALMRVQMRGRYETAKKCRSFASRVFRYG  179
              I  +  F  ++ P IGK PIAE+    LL AL +++ RG  E  +K R   + VFRY+
Sbjct  121  DEIIDT--FEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYA  178

Query  180  VVTGRCASDPAHLLQGALTTPQAKHYAAILEPAKLGELLRAIDTFTGSPVTKAALQIAPH  239
            +VTGR   +PA  L +AL+TP+  H+ ++L +  L ++L  +  +TGS +TK+A QI   
Sbjct  179  IVTGRADYNPAPDLASALATPKKVHF-PFLTANELPHFLNDLAGYTGSIITKTATQIIML  237

Query  240  VFVRPGELRHAEWAEFNLEEGIWNLPAAKMKARRPHAVPLSRQVKQMLVELRTLTGSGKY  299
              VR  ELR A W ++++E  +W++PA  MK +RPH VPLS QV  ++ +L  ++     
Sbjct  238  TGVRTQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHPL  297

Query  300  VFPSANGPSRPMSENTLNASFRRMGFDKDEVTAHGLRATASTLLNQSGL---WNPDAIER  356
            VF + N+P +P+S +++N ++  +G+ K+ +T+HG+R T ST+L++ G+   W    IE 
Sbjct  298  VFIGRNDPRKPISKESINQAIELLGY-KGRLTGHGFRHTMSTILHEQGFNSAW----IEM  352

Query  357  ALAHGESNATRGAYHRGLYWDERVRMAQWWSDYLD  391
             LAH + N+ R++Y+++LY D R  M QW +DY+D
Sbjct  353  QLAHVDKNSIRDTYNHALYLDGRREMMQWYADYID  387

550) Vapar_4495 in NC_012791


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  236 bits (882),  Expect = 1e-63, Method: Compositional matrix adjust.
 Identities = 171/395 (44%), Positives = 269/395 (69%), Gaps = 7/395 (1%)

Query  1    MALTDTFVRQVKPTGKANGDKYADGAGMYLLVKTAG-KYWRMDYTFAGKRKTLALGTYPE  59
            MALTD  V+  KP +K+   K ADG+GMYLL++T G KYWRM Y FAGK K L++G YP+
Sbjct  1    MALTDIKVKTAKPKDKPY--KLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPD  58

Query  60   VSlakardrraaarellaDGTDPSaakreekraradaaaNTFEAVAREWLGKTAAKRASG  119
            V+LA AR++R+ AR LLA G DP+ AK+EEK A+  +  NTFEA+AREW    A +++  
Sbjct  59   VTLADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLR  118

Query  120  TQLKVKTWLEKDVFPFIGKMPISTIGPRDILERVVRKLEARGAIDTAHRVKQLCGQVFRF  179
             +  +   +EKD+FP+IGK PI+ I P  +LE  +RK+E RGA++  ++V+Q CG+VFR+
Sbjct  119  YRDEIIDTFEKDIFPYIGKRPIAEIKPMKLLE-ALRKMEKRGALEKMRKVRQRCGEVFRY  177

Query  180  AVVSGLAERDVTADLSEALASKATRHFAAITEPKRVGDLMRSIHAYSGHPTTVAALKLSP  239
            A+V+G A+ + ++DL+ ALA+    HF+ +T ++ + +++  + +Y+G   T +A ++  
Sbjct  178  AIVTGRADYNPAPDLASALATPKKVHFPFLT-ANELPHFLNDLAGYTGSIITKTATQIIM  236

Query  240  LLFVRPGELRTAEWAEIDLDAAEWRIAGPKMKMKVDHVVPLATQAVEILRDLHPITGHGR  299
            L  VR  ELR A W +ID+++  W I++  MKMK  H+VPL+ Q + ++++L+PI+ H  
Sbjct  237  LTGVRTQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHP  296

Query  300  FVFPSIRTGERPMSENTINAALRGMGYSAEVHTAHGFRATARTIMDEVLGERVDFIEHQL  359
            +VF +     +P+S ++IN A+  +GY + + T+HGFR T  TI++E  G     IE QL
Sbjct  297  LVFIGRNDPRKPISKESINQAIELLGYKGRL-TGHGFRHTMSTILHEQ-GFNSAWIEMQL  354

Query  360  SHMVRDTNGRAYNRTAHLPARREMMQRWADYLDKL  394
            +H+ +++   +YN++  L +RREMMQ+ ADY+D L
Sbjct  355  AHVDKNSIRDTYNHALYLDGRREMMQWYADYIDSL  389

551) Dda3937_01301 in NC_014500


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  235 bits (878),  Expect = 3e-63, Method: Compositional matrix adjust.
 Identities = 173/410 (43%), Positives = 256/410 (63%), Gaps = 27/410 (6%)

Query  1    MKLNARQVETAKPKEKTYKMADGGGLYLEITPRGSKYWRMKYRRPDDKKEDRLAFGVWPT  60
            M L   +V TAKPK+K YK+ADGGG+YL I   GSKYWRMKYR ++  KE  L++GV P 
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAG--KEKMLSIGVYPD  58

Query  61   VTladarakrdeakkllVQGIDPkaeqkeaqaeTAGAY--TFETIARQWHA-SNKRWGDY  117
            VTLADAR KR EA+KLL  G DP   +KE +     +   TFE+IAR+WH     RW+  
Sbjct  59   VTLADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLR  118

Query  118  HRARVMRYLELYIFPHIGTADIRKLKTSHLLAPIKAVDASGKHDVAQRLQQRVTAIMRYA  177
             R  ++  +E  IFP IG   I  +K   LL +++ ++  G  +  ++++QR   + RYA
Sbjct  119  YRDEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYA  178

Query  178  VQNDYIDSNPASDMSGALTTTKARHYPALPPERLHEFLSRLAAYRGRQMTRIAVELTLLT  237
            +  +  D NPA+D+++AL+T K  H+P L ++ L +FL+ LA+Y G  +T+ A ++ +LT
Sbjct  179  IVTGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLT  238

Query  238  FVRSSELRFAQWHEFDFDKAYWRVPAQREAIKGVRYSYRGMKMKEEHIVPLSRQAVALLE  297
             VR+ ELRFA+W+++DF+   W +PA+             MKMK  HIVPLS Q + L+ 
Sbjct  239  GVRTQELRFARWEDIDFETKLWEIPAE------------VMKMKRPHIVPLSEQVIMLFK  286

Query  298  QLKAISGDNKCLFPGDHDPEKVMSENTVNNALRAMGYDTQTEVCGHGFRTMARGALGESG  357
            QL +IS ++  +F G +DP K +S +++N+A+  +GY  +  + GHGFR      L E G
Sbjct  287  QLEPISKHHPLVFIGRNDPRKPISKESINQAIELLGYKGR--LTGHGFRHTMSTILHEQG  344

Query  358  L---WSDDAIERQLSHSERNNVRAAYTHTSEYLDERRLMVQWWADYLEVL  404
            +   W    IE QL+H ++N++R +Y H+  YLD RR M+QW ADY++ L
Sbjct  345  FNSAW----IEMQLAHVDKNSIRDTYNHAL-YLDGRREMMQWYADYIDSL  389

552) EJP617_01070 in NC_017445


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  235 bits (875),  Expect = 4e-63, Method: Compositional matrix adjust.
 Identities = 149/364 (41%), Positives = 232/364 (64%), Gaps = 2/364 (0%)

Query  7    PLTNNEILKAKPREKDFTLHDGDGLFLLVKTTGKKLWRFRYQRPVSGSLTNLSLGSYPAL  66
            +LT+  +  AKP++K + L DG+G++LL++T G K WR +Y+   +G    LS+G YP +
Sbjct  2    ALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYR--FAGKEKMLSIGVYPDV  59

Query  67   TLAAARQIRDQHLTTLAQGMDPqqqqelaseqrqFELGSIFSTVAANWFQLKSKSVTEDY  126
            TLA AR+ R +    LA G DP + +      +Q  L + F ++A +W QLK+   +  Y
Sbjct  60   TLADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRY  119

Query  127  AKDIWRSLDKDVFPAIGSIPVQEIKARTIVEALEPIKARGALETVRRLVQRVNEIMIYAV  186
              +I  +++KD+FP IG  P+ EIK+  ++EAL  +  RGALE +R++ QR  E+  YA+
Sbjct  120  RDEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAI  179

Query  187  NTGLVDANPASGVGMAFEKPKKQNMPTLRPEELPRLMRSLVMSNLSVATRCLIEWQLLTL  246
             TG  D NPA++++ A+  PKK + P L ++ELP+++  L     S+ T+   +  +LT 
Sbjct  180  VTGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTG  239

Query  247  VRPSEASGARWAEIDLDTKLWTIPAERMKAKREHIVPLSPQALDIIEVMKPVSAHREHVL  306
            VR  E   ARW +ID++TKLW IPAE MK KR HIVPLS Q + ++  + P+S H+  V+
Sbjct  240  VRTQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHPLVF  299

Query  307  PSRNDPKQPMNSQTANAALKRIGYGGKLVAHGLRSIASTALNEHCFNADVIEAALAHCDK  366
             +RNDP++P++ ++ N A+  +GY G+L +HG+R   ST L+E+ FN+  IE  LAH DK
Sbjct  300  IGRNDPRKPISKESINQAIELLGYKGRLTGHGFRHTMSTILHEQGFNSAWIEMQLAHVDK  359

Query  367  NEVR  370
            N +R
Sbjct  360  NSIR  363

553) Dd703_3554 in NC_012880


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  234 bits (873),  Expect = 6e-63, Method: Compositional matrix adjust.
 Identities = 172/409 (43%), Positives = 255/409 (63%), Gaps = 27/409 (6%)

Query  1    MKLNARQVETAKPKEKTYKMADGGGLYLEITPRGSKYWRMKYRRPDDKKEDRLAFGVWPT  60
            M L   +V TAKPK+K YK+ADGGG+YL I   GSKYWRMKYR ++  KE  L++GV P 
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAG--KEKMLSIGVYPD  58

Query  61   VTlaearakrdeakkllVQGIDPkaeqkeaqaeTAGAY--TFETIARQWHA-SNKRWGDY  117
            VTLA+AR KR EA+KLL  G DP   +KE +     +   TFE+IAR+WH     RW+  
Sbjct  59   VTLADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLR  118

Query  118  HRARVMRYLELYIFPHIGTADIRKLKTSHLLAPIKAVDASGKHDVAQRLQQRVTAIMRYA  177
             R  ++  +E  IFP IG   I  +K   LL +++ ++  G  +  ++++QR   + RYA
Sbjct  119  YRDEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYA  178

Query  178  VQNDYIDSNPASDMSGALTTTKARHYPALPPERLHEFLSRLAAYRGRQMTRIAVELTLLT  237
            +  +  D NPA+D+++AL+T K  H+P L ++ L +FL+ LA+Y G  +T+ A ++ +LT
Sbjct  179  IVTGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLT  238

Query  238  FVRSSELRFAQWREFDFDKAYWRVPAQREAIKGVRYSYRGMKMKEEHIVPLSRQAVALLE  297
             VR+ ELRFA+W ++DF+   W +PA+             MKMK  HIVPLS Q + L+ 
Sbjct  239  GVRTQELRFARWEDIDFETKLWEIPAE------------VMKMKRPHIVPLSEQVIMLFK  286

Query  298  QLKAISGDNKCLFPGDHDPEKVMSENTVNNALRAMGYDTQTEVCGHGFRTMARGALGESG  357
            QL +IS ++  +F G +DP K +S +++N+A+  +GY  +  + GHGFR      L E G
Sbjct  287  QLEPISKHHPLVFIGRNDPRKPISKESINQAIELLGYKGR--LTGHGFRHTMSTILHEQG  344

Query  358  L---WSDDAIERQLSHSERNNVRAAYTHTSEYLDERRLMVQWWADYLDA  403
            +   W    IE QL+H ++N++R +Y H+  YLD RR M+QW ADY+D+
Sbjct  345  FNSAW----IEMQLAHVDKNSIRDTYNHAL-YLDGRREMMQWYADYIDS  388

554) Dd1591_3717 in NC_012912


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  234 bits (871),  Expect = 8e-63, Method: Compositional matrix adjust.
 Identities = 172/409 (43%), Positives = 255/409 (63%), Gaps = 27/409 (6%)

Query  1    MKLNARQVETAKPKEKTYKMADGGGLYLEITPRGSKYWRMKYRRPDDKKEDRLAFGVWPT  60
            M L   +V TAKPK+K YK+ADGGG+YL I   GSKYWRMKYR ++  KE  L++GV P 
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAG--KEKMLSIGVYPD  58

Query  61   VTlaearakrdeakkllVQGIDPkaeqkeaqaeTAGAY--TFETIARQWHA-SNKRWGDY  117
            VTLA+AR KR EA+KLL  G DP   +KE +     +   TFE+IAR+WH     RW+  
Sbjct  59   VTLADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLR  118

Query  118  HRARVMRYLELYIFPHIGTADIRKLKTSHLLAPIKAVDASGKHDVAQRLQQRVTAIMRYA  177
             R  ++  +E  IFP IG   I  +K   LL +++ ++  G  +  ++++QR   + RYA
Sbjct  119  YRDEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYA  178

Query  178  VQNDYIDSNPASDMSGALTTTKARHYPALPPERLHEFLSRLAAYRGRQMTRIAVELTLLT  237
            +  +  D NPA+D+++AL+T K  H+P L ++ L +FL+ LA+Y G  +T+ A ++ +LT
Sbjct  179  IVTGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLT  238

Query  238  FVRSSELRFAQWREFDFDKAYWRVPAQREAIKGVRYSYRGMKMKEEHIVPLSRQAVALLE  297
             VR+ ELRFA+W ++DF+   W +PA+             MKMK  HIVPLS Q + L+ 
Sbjct  239  GVRTQELRFARWEDIDFETKLWEIPAE------------VMKMKRPHIVPLSEQVIMLFK  286

Query  298  QLKAISGDNKCLFPGDHDPEKVMSENTVNNALRAMGYDTQTEVCGHGFRTMARGALGESG  357
            QL +IS ++  +F G +DP K +S +++N+A+  +GY  +  + GHGFR      L E G
Sbjct  287  QLEPISKHHPLVFIGRNDPRKPISKESINQAIELLGYKGR--LTGHGFRHTMSTILHEQG  344

Query  358  L---WSDDAIERQLSHSERNNVRAAYTHTSEYLDERRLMVQWWADYLDA  403
            +   W    IE QL+H ++N++R +Y H+  YLD RR M+QW ADY+D+
Sbjct  345  FNSAW----IEMQLAHVDKNSIRDTYNHAL-YLDGRREMMQWYADYIDS  388

555) XALc_1804 in NC_013722


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  233 bits (869),  Expect = 1e-62, Method: Compositional matrix adjust.
 Identities = 172/406 (43%), Positives = 257/406 (64%), Gaps = 26/406 (6%)

Query  1    MPLTDTAIRKTKLGVAPLKLRDGGGLYLLMRPDGARWWRWDYRRPNTGKRNTLSLGTYPD  60
            M+LTD  ++ +K    P KL DGGG+YLL+  +G++ WR  YR   +GK + LS+G YPD
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYR--FAGKEKMLSIGVYPD  58

Query  61   TGladardkrdaarkllaaGVDPGEQRKRAKEQAAMVAPAGETFETVAREWMARQTVARV  120
              LADAR+KR  ARKLLAAG DPGE +K  K    M  +  +TFE++AREW   ++    
Sbjct  59   VTLADAREKRSEARKLLAAGGDPGEAKKEEKIAQQM--SLKNTFEAIAREWHQLKA----  112

Query  121  TAEKNRW-------LLETF---LFPEIGSRPIGEITPRELLDALRKIEATGKLETAGRAK  170
                +RW       +++TF   +FP IG RPI+EI P  LL+ALRK+E  G LE   + +
Sbjct  113  ----DRWSLRYRDEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVR  168

Query  171  IKAGQVFRYAMLEGKAEIDPTASLRGALKTVKARHHASITDPVKIGQLLRAIEGFIGQPV  230
             + G+VFRYA++ G+A+ +P++ L +AL T K  H + +T    + ++L  + G+ G  +
Sbjct  169  QRCGEVFRYAIVTGRADYNPAPDLASALATPKKVHFPFLTAN-ELPHFLNDLAGYTGSII  227

Query  231  THAALKLAPLVFVRPGELRAAEWGEIDLDAAMWRIRPERMKMKAAHLVPLSSQAVAILRD  290
            T +A ++  L  VR  ELR A W +ID+++ +W I +E MKMK +H+VPLS Q + ++++
Sbjct  228  TKTATQIIMLTGVRTQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQ  287

Query  291  LHALTGGGPHVFPGLR-PNRPMSENTINAALRGLGYASDEMTGHGFRSMAATRLNEMGWN  349
            L++++   P VF G   P +P+S ++IN A+  LGY  + +TGHGFR   +T L+E G N
Sbjct  288  LEPISKHHPLVFIGRNDPRKPISKESINQAIELLGY-KGRLTGHGFRHTMSTILHEQGFN  346

Query  350  PDAIERQLAHAETNKVREAYTHAAQYLPERIRMMQAWADYLDGLCA  395
            +  IE QLAH + N +R++Y HA  YL  R  MMQ  ADY+D+L +
Sbjct  347  SAWIEMQLAHVDKNSIRDTYNHAL-YLDGRREMMQWYADYIDSLSS  391

556) SLG_29060 in NC_015976


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  233 bits (868),  Expect = 1e-62, Method: Compositional matrix adjust.
 Identities = 163/406 (41%), Positives = 252/406 (63%), Gaps = 31/406 (7%)

Query  1    MALTAVAINKAKGRAKPYKLTDGDGLFLYVTPNGGRYWRMNYRHHGKQKTLAFGVYPDTG  60
            MALT + ++ AK + KPYKL+DG+G++L +  NG++YWRM+YR  GK+K L++GVYPD  
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   LADAREQRDAARKVLARGCDPAEQIRLERIaaavaasnsfkavaDEWLVKVECEGRSAVT  120
            LADARE+R  ARK+LA G DP+E  + E+IA  ++  N+F A+A EW             
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREW-----------HQ  109

Query  121  MKKLRWLLDFINES-----------IGKRPIASITAQELLVMLRKMESKGRYETAKRLRS  169
            +K  RW L + +E            IGKRPIA I +  LL  LRKME +G  E  +++R 
Sbjct  110  LKADRWSLRYRDEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQ  169

Query  170  TASQIFRYAIATARAERDVAADLRGALIAPQPVHRAAITNADAAGGLLRAIEAFEGHPST  229
              +++FRYAI T+RA+ + A+DL +AL +P+ VH + +T  + +  +L  + ++ G   T
Sbjct  170  RCGEVFRYAIVTGRADYNPAPDLASALATPKKVHFPFLTANELP-HFLNDLAGYTGSIIT  228

Query  230  KAALRLLPHVFVRPGELRFAEWADFDFDKAVWTIPPYKTKMRRVHSIPLSRQALAILETI  289
            K+A +++    VR  ELRFA W D+DF+  +W IP+   KM+R H +PLS Q + ++  +
Sbjct  229  KTATQIIMLTGVRTQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQL  288

Query  290  EHDADYSSYLFPSLRSVDRPMSENTINAALRRLGFAQDEMTGHGFRAMAATLLNEMGL--  347
            E  +   + +F +     +P+S ++IN A+  LG+ ++ +TGHGFR   +T+L+E G+  
Sbjct  289  EPISKHHPLVFIGRNDPRKPISKESINQAIELLGY-KGRLTGHGFRHTMSTILHEQGFNS  347

Query  348  -WHPDAIERQLAHCDNNAVRRAYTRGEYWDERVRMMQHWSDHLDFL  392
             W    IE QLAH D+N++R +Y ++ Y D R  MMQ  +D +D L
Sbjct  348  AW----IEMQLAHVDKNSIRDTYNHALYLDGRREMMQWYADYIDSL  389

557) UMNK88_5213 in NC_017641


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  233 bits (868),  Expect = 8e-63, Method: Compositional matrix adjust.
 Identities = 135/304 (45%), Positives = 210/304 (70%), Gaps = 14/304 (4%)

Query  1    MALSDVKVRSAKPEAKAYKLTDGEGMVLLVHPNGSKYWRLRYRFGGKEKMLALGKYPEVS  60
            MAL+D+KV++AKP  K+YKL+DG GM LL++ NGSKYWR++YRF+GKEKML++G YP+V+
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   LadararrdearKLLANGVDPSENKKAVKVEQEQE-AITFEVVARDWHA-SNQKWSASHS  118
            LADAR +R EARKLLA G DP+E KK  K+ Q+     TFE +AR+WH    ++WS    
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  119  ARVLKSLEDNLFTAIGKRNIAELKTRDLLVPIKAVESSGRLEVAARLQQRTTAIMRFAVQ  178
              ++ ++E ++F  IGKR IAE+K   LL +++ +E  G LE   +++QR   + R+A+ 
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  179  SGLIDYNPAQEIAGAVATAKRQHRAALELNRIPELLHRIDHYSGRPLTRLAVELTLLVFI  238
            +G  DYNPA ++A+A+AT+K+ H + L  N +P++L+ +  Y+G  +T+ A ++ +L  +
Sbjct  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV  240

Query  239  RSSELHFARWSEVDFETAMWTIPGEREQLEGVKHSQRGSKMRTPHLVPLSRQALSILEKI  298
            R+ EL+FARW ++DFET +W IP+E              KM+ PH+VPLS Q + ++ ++
Sbjct  241  RTQELRFARWEDIDFETKLWEIPAE------------VMKMKRPHIVPLSEQVIMLFKQL  288

Query  299  KSMS  302
             ++S
Sbjct  289  EPIS  292

558) ybl123 in NC_012892


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  232 bits (865),  Expect = 2e-62, Method: Compositional matrix adjust.
 Identities = 127/294 (44%), Positives = 200/294 (69%), Gaps = 15/294 (5%)

Query  1    MALTDAKIRAAKPTDKAYKLTDGAGMLMLVHPNSSRYWRLRYRILGKEKTLALGVYPEVS  60
            MALTD K+++AKP DK+YKL+DG+GM +L++ N+S+YWR++YR+ GKEK L++GVYP+V+
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   LSEARAKRDEARKLISAGIDPCEQKRAKKVVPDLQL--SFEHIARRWHA-SNKQWTQSHS  117
            L++AR KR EARKL++AG DP E K+  K+  ++ L  +FE IAR WH     +W+    
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  118  DKVLKSLETHVFPFIGNRDITKLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQ  177
            D ++ ++E ++FP+IG+R I+ ++   LL ++R  E +   E   +++QR + V RYA+ 
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  178  SGIIRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTRLAVMLNLLVFI  237
            +G   YNPA D+A+AL+T K+ H P L  + LP++L+ +++Y G  +T+ A  + +L  +
Sbjct  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV  240

Query  238  RSSELRYARWSEIDIENAMWTIPAEREPLPGVNFSHRGSKMRTPHLVPLSKQAV  291
            R+ ELR+ARW +ID+E  +W IPAE              KM+ PH+VPLS Q +
Sbjct  241  RTQELRFARWEDIDFETKLWEIPAE------------VMKMKRPHIVPLSEQVI  282

559) Fraau_2605 in NC_017033


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  231 bits (863),  Expect = 3e-62, Method: Compositional matrix adjust.
 Identities = 160/393 (41%), Positives = 255/393 (65%), Gaps = 10/393 (2%)

Query  8    LTALGIKSL-GTGKHY---DGGGLHLKVEATGRKYWRYDFRIAGKPDTFAVGVYPKVTLA  63
            LT + +K+    +K Y   DGGG+ L +++ G KYWR  +R+AGK   +++GVYP VTLA
Sbjct  3    LTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVTLA  62

Query  64   EARLRHAEASALVSQGINPkahkrakqaaavvanantfqavaDEWMAQQKPKMAKATY-D  122
            +AR +++EA  L++ G +P   K+  + A  ++  NTF+A+A EW  Q K+      Y D
Sbjct  63   DAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREW-HQLKADRWSLRYRD  121

Query  123  KAMWMLADLVYPWLGKRPISEIDAPELLAVLRRIEERGANETAHRTKQRCGQIFRYAIAT  182
              +  +   ++P +GKRPI+EI +  LL  LR++E RGA E  ++ +QRCG++FRYAI T
Sbjct  122  EIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIVT  181

Query  183  GRAKHDPSGDLRGALAPPITKSRAAITDPQKVGELLRAIDGYSGSFSVICALRLAPMLFV  242
            GRA  +P+ DL +ALA P  K + ++  ++ + ++L  + GY+GS+    A ++  +  V
Sbjct  182  GRADYNPAPDLASALATP-KKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV  240

Query  243  RPGELRHAEWAEFDLDQGLWRIPAEKMKMRDEHLVPLPDQALAILRDLLPLTGPDGYLFP  302
            R  ELR A W ++D++  LW IPAE MKM+  H+VPL++Q + ++++L P++  +  +F 
Sbjct  241  RTQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHPLVFI  300

Query  303  GERSASRPMSENTVNAALRRLGYDKDTMTGHGFRAMASTRLNELGWSPDVIERQLAHAER  362
            G   + +P+S +++N A+  LGY K+ +TGHGFR   ST L+E G ++  IE QLAH ++
Sbjct  301  GRNDPRKPISKESINQAIELLGY-KGRLTGHGFRHTMSTILHEQGFNSAWIEMQLAHVDK  359

Query  363  NKVRAAYNRAQYLPERQRMMQAW-ADYLDSLKA  394
            N +R +YN+A YL  R+ MMQ W ADY+DSL +
Sbjct  360  NSIRDTYNHALYLDGRREMMQ-WYADYIDSLSS  391

560) mll5763 in NC_002678


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  231 bits (860),  Expect = 6e-62, Method: Compositional matrix adjust.
 Identities = 165/400 (42%), Positives = 255/400 (64%), Gaps = 16/400 (4%)

Query  1    MSLSDFTCKNAKPKDKPYRLADGDGLYLLVRNNGSKLWQLRYRYLEKENILSFGKYPLVS  60
            M+L+D+  K AKPKDKPY+LADG+G+YLL+  NGSK W+++YR+  KE++LS+G YP V+
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   LLDARGKRDDAKRLLIAGISPSTKRKEEKTAAITEARTTFALVAEEYVTRMEE------R  114
            L DAR KR +A++LL AG  P+  +KEEK A     + TF  +A E      +      R
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  115  DAAAATISKTKWLLEDLAGPLAKRPINEITPAEIFQLLQKIEKSGRRETARRLRSVIGSV  174
            D    T+ K      D+   ++KRPI EI P  +++ L+K+EK G  E  R++R   G V
Sbjct  121  DEIIDTFEK------DIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEV  174

Query  175  FRLAIVTLRAEADPTLHLRGALQPPKVNGRAAITDENKFGKLLMTVDEYDGWPTIKAALQ  234
            FR AIVT RA+ +P+ +L +AL  PK + + ++   N +  +L  +  Y G    K+A Q
Sbjct  175  FRYAIVTGRADYNPAPDLASALATPK-KVHFPFLTANELPHFLNDLAGYTGSIITKTATQ  233

Query  235  FLALTCVRPGEVRGATRDEFDRKKAVWHIPAERMKMRAPHDVPLSKQALSVLEEVWQLSE  294
            ++ LT VR  E+R A ++++D    +W+IPAE MKM+ PH VPLS Q + ++ ++  +S 
Sbjct  234  IIMLTGVRTQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISK  293

Query  295  DGGLVFPSIRSTKRPLSENAMNAALRRMGYGKDEVTAHGFRVTASTILNARDYDPDVIEA  354
            +  LVF +    ++P+S +++N A+  +GY K+ +T+HGFR T STIL+ +++++  IE 
Sbjct  294  HHPLVFIGRNDPRKPISKESINQAIELLGY-KGRLTGHGFRHTMSTILHEQGFNSAWIEM  352

Query  355  VLAHQDKNAIRRTYNRATYWNQRVTLMQEW-GDLLDALKA  393
             LAH DKN+IR TYN+A Y + R  +MQ W +D +D+L +
Sbjct  353  QLAHVDKNSIRDTYNHALYLDGRREMMQ-WYADYIDSLSS  391

561) HEAR0701 in NC_009138


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  231 bits (860),  Expect = 6e-62, Method: Compositional matrix adjust.
 Identities = 159/393 (41%), Positives = 270/393 (69%), Gaps = 5/393 (1%)

Query  7    PLTDLQVRTAKPVVGKAHTLADGLGMYLEITAVGTKIWRMSYRQENGKQNRLTFGSYPEI  66
            +LTD++V+TAKP  +K+  LADG GMYL I + G+K WRM YR   GK++ L++G YP++
Sbjct  2    ALTDIKVKTAKPK-DKPYKLADGGGMYLLINTNGSKYWRMKYRF-AGKEKMLSIGVYPDV  59

Query  67   SLTearakraearkllaDGIDPAQFKREAKEAKAIAGTHTFETVAHAWLKKTSAMRASTT  126
            +L++AR KR+EARKLLA G DP++ K+E K A+ ++  +TFE++A+ W +  +  ++   
Sbjct  60   TLADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRY  119

Query  127  QEKVTNWLQKDVFPFIGHMPVSLIKPLNVLTTVQKMEARGSVESAHRVKQICGQVLRYAV  186
            ++ + + ++KD+FP+IG  P++ IKP+++L +++KME RG++E  ++V+Q CG+V+RYA+
Sbjct  120  RDEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAI  179

Query  187  ATGLAERDVTADLKGALSVVPKTNYAAIIEPKQAGVLLRSIFGYTGHPYAVAALKLSPLL  246
             TG A+ + ++DL +AL+   K ++ +++ +++   +L  + GYTG   + +A ++  L 
Sbjct  180  VTGRADYNPAPDLASALATPKKVHF-PFLTANELPHFLNDLAGYTGSIITKTATQIIMLT  238

Query  247  FVRPGELRSAEWKEIDLDAAEWRIPGEKMKMKIDHLVPLSTQAIEILRNVHAMTGHGKYV  306
             VR  ELR A W +ID+++  W IP+E MKMK  H+VPLS Q I +++++++++ H   V
Sbjct  239  GVRTQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHPLV  298

Query  307  FPSIRTYERCMSENTINAALRSMGYDKETMTAHGFRAMARTIMDEVLGERVDLIEHQLAH  366
            F +     + +S ++IN A+  +GY K  +T+HGFR    TI++E  G     IE QLAH
Sbjct  299  FIGRNDPRKPISKESINQAIELLGY-KGRLTGHGFRHTMSTILHEQ-GFNSAWIEMQLAH  356

Query  367  AVKDPNGRAYNRTAHLPARRQMMQRWADYLDSL  399
              K++   +YN++  L +RR+MMQ+ ADY+DSL
Sbjct  357  VDKNSIRDTYNHALYLDGRREMMQWYADYIDSL  389

562) plu4460 in NC_005126


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  230 bits (856),  Expect = 1e-61, Method: Compositional matrix adjust.
 Identities = 164/409 (41%), Positives = 256/409 (63%), Gaps = 27/409 (6%)

Query  1    MKLNARQIEAAKPKDKAYKLADGGGLYLEITPRGSKYWRMKYRRPTDKKEDRLAFGVYPV  60
            M L   ++ +AKPKDK+YKLADGGG+YL I   GSKYWRMKYR +   KE  L++GVYP 
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAG--KEKMLSIGVYPD  58

Query  61   ISLADARAKRNEAKKLIANGIDPKATQKETQAEASGEFN--FETIARKWHS-SNKRWGDY  117
            ++LADAR KR+EA+KL+A G DP  ++KE +      ++  FE+IAR WH     RW+  
Sbjct  59   VTLADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLR  118

Query  118  NRARVLRSLEQYIFPHIGKIDIRQLKTRELLVPIkavddadkvdvakRLQQCVTAIMRYA  177
             R  ++ ++E+ IFP IGK  I ++K   LL +++ ++  + ++  ++++Q    + RYA
Sbjct  119  YRDEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYA  178

Query  178  VQCGIIESNPALDMAGALSTTKTEHHpalppsrlpellerTALFKGREVTRIAIEFGLLT  237
            +  G  + NPA D+A+AL+T K  H P L ++ LP++L+  A + G  +T+ A ++ +LT
Sbjct  179  IVTGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLT  238

Query  238  FVRASKLRFVRWDEFDFDNAIWEIPGKREAIENVKFSERGMKMKTPHIVPLSSQAMALLE  297
             VR+  LRF RW+++DF+  +WEIP+              MKMK PHIVPLS Q + L+ 
Sbjct  239  GVRTQELRFARWEDIDFETKLWEIPAE------------VMKMKRPHIVPLSEQVIMLFK  286

Query  298  KLKEYSGDNRCLFPGDRDPNKVMSENTVNKALRVMGYDIKTEICYHGFRTMARGAMGESG  357
            +L   S ++  +F G  DP K +S +++N+A+ ++GY  K  +  HGFR      + E G
Sbjct  287  QLEPISKHHPLVFIGRNDPRKPISKESINQAIELLGY--KGRLTGHGFRHTMSTILHEQG  344

Query  358  I---WADDVIERQLSHLERNNVKAAYLHTSHHLDECRLMLQWWADYLDA  403
            +   W    IE QL+H+++N+++ +Y H +  LD  R M+QW ADY+D+
Sbjct  345  FNSAW----IEMQLAHVDKNSIRDTYNH-ALYLDGRREMMQWYADYIDS  388

563) Alide_1445 in NC_014910


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  230 bits (859),  Expect = 8e-62, Method: Compositional matrix adjust.
 Identities = 161/402 (41%), Positives = 251/402 (63%), Gaps = 14/402 (3%)

Query  2    LTEIACKSTTCPADKPRVRFADSGGLYLEVTPNGSKRWFWKYRFDGKEKRIAFGSYPDVK  61
            LT+I  K++  P DKP  ++AD+GG+YL +  NGSK W  KYRF GKEK +++G YPDV 
Sbjct  3    LTDIKVKTAK-PKDKP-YKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  62   LKEARTARDDARKLHQQGIDPAQKRQLDRLENKRQADVTFEAVAREFHATKASGWSKQYG  121
            L +AR  R +ARKL   G DP++ ++ +++ ++     TFEA+ARE H  KA  WS +Y 
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  122  ERWIERMEKDLFPWIGALPLATITAPMLLHALRRTEARGAKETAHTLRQTAGQVFRYGIA  181
            +  I+  EKD+FP IG  P+A I +  LL+ALR+ E RGA E  + +RQ  G+VFRY+I 
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  182  TGRCERNPAPDLHGALAPLNVKHMAAVLDADSAGKLMRAIFDYEGQPSTRAALELSALLF  241
            TGR + NPAPDL +ALA  +  H  + L A+    ++  + +Y G   T++A ++  L  
Sbjct  181  TGRADYNPAPDLASALATPKKVHF-PFLTANELPHFLNDLAGYTGSIITKTATQIIMLTG  239

Query  242  QRPGNIRHMEWVEIDLDAALWTIPADKMKRTIYGKTNGRPHFVPLAPRAIQILKDLKPLT  301
             R  ++R   W +ID+++ LW IPA+ MK         RPH+VPL+ + I ++K+L P++
Sbjct  240  VRTQELRFARWEDIDFETKLWEIPAEVMKMK-------RPHIVPLSEQVIMLFKQLEPIS  292

Query  302  GHGKYVFPSLLTGERAMSENTIRTALRRMGYTNDEMTPHGFRAMARTIMVERLNMHPDVI  361
             H   VF +     +++S ++I  A+  +GY ++ +T HGFR    TI+ E+   ++  I
Sbjct  293  KHHPLVFIGRNDPRKPISKESINQAIELLGY-KGRLTGHGFRHTMSTILHEQ-GFNSAWI  350

Query  362  EAQLAHGKSGPLGAAYDRAQFMEQRRQMMNEW-ADYLDKLRT  402
            E QLAH    ++  +Y++A +++ RR+MM +W ADY+D L +
Sbjct  351  EMQLAHVDKNSIRDTYNHALYLDGRREMM-QWYADYIDSLSS  391

564) SBOV27691 in NC_022241


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  229 bits (853),  Expect = 1e-61, Method: Compositional matrix adjust.
 Identities = 140/335 (42%), Positives = 216/335 (65%), Gaps = 0/335 (0%)

Query  1    MMGLGAFPALSLADARGLRADYLALLANGIDPQIQTEVAEEQQQIALDSIFSTVAANWFQ  60
            M+++G +P ++LADAR  R++   LLA G DP          QQ++L + F ++A +W Q
Sbjct  50   MLSIGVYPDVTLADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQ  109

Query  61   LKSKSVTPDYAKDIWRSLEKDVFPAIGEIPVQQIKARTLVEALEPIKARGALETVRRLVQ  120
            LK+   +  Y  +I  ++EKD+FP IG  P+ +IK+  L+EAL  +  RGALE +R++ Q
Sbjct  110  LKADRWSLRYRDEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQ  169

Query  121  RINEIMIYAVNTGLIDANPASGVGMAFEKPKKQNMPTLRPEELPKLMRSLVMSNLSVSTR  180
            R  E+  YA+ TG  D NPA++++ A+  PKK + P L ++ELP ++  L     S+ T+
Sbjct  170  RCGEVFRYAIVTGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITK  229

Query  181  CLIEWQLLTLVRPSEASGARWAEIDLDAKLWTIPAERMKAKREHIVPLSTQALEILEVMK  240
               +  +LT VR  E   ARW +ID+++KLW IPAE MK KR HIVPLS Q + ++  + 
Sbjct  230  TATQIIMLTGVRTQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLE  289

Query  241  PISAHREHVFPSRNDPKQSMNSQTANAALKRIGYGGKLVAHGLRSIASTTLNEAGFNADV  300
            PIS H+  VF +RNDP+++++ ++ N A+  +GY G+L +HG+R   ST L+E GFN+  
Sbjct  290  PISKHHPLVFIGRNDPRKPISKESINQAIELLGYKGRLTGHGFRHTMSTILHEQGFNSAW  349

Query  301  IEAALAHTDKNEVRRAYNRSIYLKQRIGMMEWWGE  335
            IE  LAH DKN +R +YN+++YL  R  MM+W ++
Sbjct  350  IEMQLAHVDKNSIRDTYNHALYLDGRREMMQWYAD  384

565) I607_10285 in NC_021710


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  229 bits (855),  Expect = 1e-61, Method: Compositional matrix adjust.
 Identities = 158/390 (41%), Positives = 245/390 (63%), Gaps = 2/390 (0%)

Query  7    ALSATQVKQAKPRDAEYNLSDGKGLALRIKPNGSKLWIFNYSKPHTKKRSNIGIGSYPDV  66
            AL+  +VK AKP+D  Y+L+DG G+ L I+ NGSK W  +Y    + K   ++IG YPDV
Sbjct  2    ALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYR--FAGKEKMLSIGVYPDV  59

Query  67   SLADAREHREAFRKLLAkdvdpkehkdhekekALFSASQTFESVAKQWFEIHASKVSEGT  126
            +LADARE R   RKLLA + DP E K +EK     S  +TFE++A++W ++ A + S   
Sbjct  60   TLADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRY  119

Query  127  LKNIKRSFSNDVFPLVGRVPIEQLTAPKAIEVINAIVGRNSHEIARKVARRMNSVMTYAV  186
              +I  +F +D+FP +G+ PI ++ + K +E +  +  R + E  RKV +R   V  YA+
Sbjct  120  RDEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAI  179

Query  187  NAGIIHHNPLIGIKELIPSTKVKHQPTLQPEELPELVKALKYSSAKITTRCLIEFQLHTM  246
             +G  + NP  ++   +++ K  H P L ++ELP++++ L   ++ I T+   ++ + T 
Sbjct  180  VTGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTG  239

Query  247  VRPGEAAEAKWSEIDFSQSIWAIPAERMKMDRPHLVPLTPQVLEILELMKPLSFHREYVF  306
            VR  E   A+W +IDF   +W IPAE MKM RPH+VPL+ QV+ ++  + P+S H+  VF
Sbjct  240  VRTQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHPLVF  299

Query  307  PSHVDPKKPANKQSANKALRDMGFRGRLVAHGMRALASTTLNEEGFDHDVIEAALAHKDE  366
             ++ DP+KP +K+S N+A+  +G++GRL +HG R   ST L+E+GF+   IE  LAH D 
Sbjct  300  IGRNDPRKPISKESINQAIELLGYKGRLTGHGFRHTMSTILHEQGFNSAWIEMQLAHVDK  359

Query  367  NEVRAAYNRAQYLDRRRSMMEWWSNKIVEL  396
            N +R +YN+A YLD RR MM+W ++ I  L
Sbjct  360  NSIRDTYNHALYLDGRREMMQWYADYIDSL  389

566) I876_10625 in NC_021717


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  229 bits (855),  Expect = 1e-61, Method: Compositional matrix adjust.
 Identities = 158/390 (41%), Positives = 245/390 (63%), Gaps = 2/390 (0%)

Query  7    ALSATQVKQAKPRDAEYNLSDGKGLALRIKPNGSKLWIFNYSKPHTKKRSNIGIGSYPDV  66
            AL+  +VK AKP+D  Y+L+DG G+ L I+ NGSK W  +Y    + K   ++IG YPDV
Sbjct  2    ALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYR--FAGKEKMLSIGVYPDV  59

Query  67   SLADAREHREAFRKLLAkdvdpkehkdhekekALFSASQTFESVAKQWFEIHASKVSEGT  126
            +LADARE R   RKLLA + DP E K +EK     S  +TFE++A++W ++ A + S   
Sbjct  60   TLADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRY  119

Query  127  LKNIKRSFSNDVFPLVGRVPIEQLTAPKAIEVINAIVGRNSHEIARKVARRMNSVMTYAV  186
              +I  +F +D+FP +G+ PI ++ + K +E +  +  R + E  RKV +R   V  YA+
Sbjct  120  RDEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAI  179

Query  187  NAGIIHHNPLIGIKELIPSTKVKHQPTLQPEELPELVKALKYSSAKITTRCLIEFQLHTM  246
             +G  + NP  ++   +++ K  H P L ++ELP++++ L   ++ I T+   ++ + T 
Sbjct  180  VTGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTG  239

Query  247  VRPGEAAEAKWSEIDFSQSIWAIPAERMKMDRPHLVPLTPQVLEILELMKPLSFHREYVF  306
            VR  E   A+W +IDF   +W IPAE MKM RPH+VPL+ QV+ ++  + P+S H+  VF
Sbjct  240  VRTQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHPLVF  299

Query  307  PSHVDPKKPANKQSANKALRDMGFRGRLVAHGMRALASTTLNEEGFDHDVIEAALAHKDE  366
             ++ DP+KP +K+S N+A+  +G++GRL +HG R   ST L+E+GF+   IE  LAH D 
Sbjct  300  IGRNDPRKPISKESINQAIELLGYKGRLTGHGFRHTMSTILHEQGFNSAWIEMQLAHVDK  359

Query  367  NEVRAAYNRAQYLDRRRSMMEWWSNKIVEL  396
            N +R +YN+A YLD RR MM+W ++ I  L
Sbjct  360  NSIRDTYNHALYLDGRREMMQWYADYIDSL  389

567) I634_10495 in NC_021712


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  229 bits (855),  Expect = 1e-61, Method: Compositional matrix adjust.
 Identities = 158/390 (41%), Positives = 245/390 (63%), Gaps = 2/390 (0%)

Query  7    ALSATQVKQAKPRDAEYNLSDGKGLALRIKPNGSKLWIFNYSKPHTKKRSNIGIGSYPDV  66
            AL+  +VK AKP+D  Y+L+DG G+ L I+ NGSK W  +Y    + K   ++IG YPDV
Sbjct  2    ALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYR--FAGKEKMLSIGVYPDV  59

Query  67   SLADAREHREAFRKLLAkdvdpkehkdhekekALFSASQTFESVAKQWFEIHASKVSEGT  126
            +LADARE R   RKLLA + DP E K +EK     S  +TFE++A++W ++ A + S   
Sbjct  60   TLADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRY  119

Query  127  LKNIKRSFSNDVFPLVGRVPIEQLTAPKAIEVINAIVGRNSHEIARKVARRMNSVMTYAV  186
              +I  +F +D+FP +G+ PI ++ + K +E +  +  R + E  RKV +R   V  YA+
Sbjct  120  RDEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAI  179

Query  187  NAGIIHHNPLIGIKELIPSTKVKHQPTLQPEELPELVKALKYSSAKITTRCLIEFQLHTM  246
             +G  + NP  ++   +++ K  H P L ++ELP++++ L   ++ I T+   ++ + T 
Sbjct  180  VTGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTG  239

Query  247  VRPGEAAEAKWSEIDFSQSIWAIPAERMKMDRPHLVPLTPQVLEILELMKPLSFHREYVF  306
            VR  E   A+W +IDF   +W IPAE MKM RPH+VPL+ QV+ ++  + P+S H+  VF
Sbjct  240  VRTQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHPLVF  299

Query  307  PSHVDPKKPANKQSANKALRDMGFRGRLVAHGMRALASTTLNEEGFDHDVIEAALAHKDE  366
             ++ DP+KP +K+S N+A+  +G++GRL +HG R   ST L+E+GF+   IE  LAH D 
Sbjct  300  IGRNDPRKPISKESINQAIELLGYKGRLTGHGFRHTMSTILHEQGFNSAWIEMQLAHVDK  359

Query  367  NEVRAAYNRAQYLDRRRSMMEWWSNKIVEL  396
            N +R +YN+A YLD RR MM+W ++ I  L
Sbjct  360  NSIRDTYNHALYLDGRREMMQWYADYIDSL  389

568) SG2104 in NC_007712


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  228 bits (848),  Expect = 3e-61, Method: Compositional matrix adjust.
 Identities = 126/286 (45%), Positives = 196/286 (69%), Gaps = 5/286 (1%)

Query  1    MALSDVKVRAAKPEAKAYKLKDGEGMVLLVHPNGSKYWRLRYRFGGKEKMLELGQYPEVL  60
            MAL+D+KV++AKP  K+YKL DG GM LL++ NGSKYWR++YRF+GKEKML +G YP+V 
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   LADARSRRDEARKLLANGINPIENKKAIKVEQEQE-AITFEVVARDWHA-SNQKWSASHS  118
            LADAR +R EARKLLA G +P E KK  K+ Q+     TFE +AR+WH    ++WS    
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  119  ARVLKSLEDNLFTAIGKRNIAELKTRDLLVPIKAVESSGRLEVAARLQQRTTAIMCFAVQ  178
              ++ ++E ++F  IGKR IAE+K   LL +++ +E  G LE   +++QR   +  +A+ 
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  179  SGLIDYNPAQEIAGAVATAKRQHRAALELNRIPELLHRIDHYSGRPLTRLAVELTLLVFI  238
            +G  DYNPA ++A+A+AT+K+ H + L  N +P++L+ +  Y+G  +T+ A ++ +L  +
Sbjct  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV  240

Query  239  RSSELRFARWPEVDFDTAKWTIPGEREPLEGVKHSQVVRRCGRFIL  284
            R+ ELRFARW ++DF+T  W IP+E   +  +K++++V    + I+
Sbjct  241  RTQELRFARWEDIDFETKLWEIPAE---VMKMKRPHIVPLSEQVIM  283

569) PSPTO_3385 in NC_004578


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  228 bits (851),  Expect = 3e-61, Method: Compositional matrix adjust.
 Identities = 159/392 (41%), Positives = 244/392 (63%), Gaps = 20/392 (5%)

Query  1    MALTDTALRQAKPKDKAYTLPDSLGLSLYVAPTAIKSWHFRFTWLGKQVRISLGTYPEIG  60
            MALTD  ++ AKPKDK+Y L+D+ G+ L +   + K W+ ++   GK+  +S+G YP++ 
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   LKearirrdeareevarGIDPRESRKEKKALLINAQGHTLRRVYE----EWLAFRRGSLK  116
            L +AR +R EAR  +A G DP E++KE K     AQ  +L+  +E    EW       LK
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKI----AQQMSLKNTFEAIAREW-----HQLK  111

Query  117  PG--SLRI---ISNSMELDWLPSFGNRQMNSITRSEIVSVIRRIEKRGSVTTAVKTRQRL  171
            ++  SLR    I ++ E D +P +G+R +  I    ++  +R++EKRG++    K RQR 
Sbjct  112  ADRWSLRYRDEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRC  171

Query  172  SQIFRYAIATGIVDTNPTLEMHTVTERITLQRHFPFLPFSELPKTISTILGCSAGQQYKS  231
            +++FRYAI TG  D NP+ ++ +       + HFPFL  +ELP  ++ + G +++   K+
Sbjct  172  GEVFRYAIVTGRADYNPAPDLASALA-TPKKVHFPFLTANELPHFLNDLAGYTGSIITKT  230

Query  232  AFMMMIYCASRPGEVRHAMWKEIDFDNAIWTIPAGKMKMRRDHVVPLPNQAIELLKTMLP  291
            A  +++  + R  E+R A W +IDF+  +W IPA  MKM+R H+VPL++Q I L+K + P
Sbjct  231  ATQIIMLTGVRTQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEP  290

Query  292  LTGHLEYIFVHRSDPTKPVSTNYANNVIELSGLTGIQSPHGFRHLFSTEMNGRGYNRDWI  351
            ++ H   +F+ R+DP KP+S +  N+ IEL G  G  + HGFRH  ST ++ +G+N  WI
Sbjct  291  ISKHHPLVFIGRNDPRKPISKESINQAIELLGYKGRLTGHGFRHTMSTILHEQGFNSAWI  350

Query  352  ERQLAHSDTSIIRDTYNHATYIEQRREMMQDW  383
            E QLAH D + IRDTYNHA Y++ RREMMQ W
Sbjct  351  EMQLAHVDKNSIRDTYNHALYLDGRREMMQ-W  381

570) TY21A_13395 in NC_021176


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  228 bits (850),  Expect = 4e-61, Method: Compositional matrix adjust.
 Identities = 156/387 (41%), Positives = 252/387 (66%), Gaps = 2/387 (0%)

Query  7    PLTNTEVLRAKALEKDLTLHDGDGLFLLVKTNGKKLWRFRYQRPATKQRTMMGLGTFPal  66
            +LT+  V  AK+ +K   L DG+G++LL++TNG K WR +Y R A K++ M+++G +P +
Sbjct  2    ALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKY-RFAGKEK-MLSIGVYPDV  59

Query  67   sladarrlradylsllaNGIDPqiqaeiaeeqqqiaqDSIFTTVAANWFQLKSKSVTPDY  126
            +LADAR  R++   LLA G DP          QQ++  + F ++A +W QLK+   +  Y
Sbjct  60   TLADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRY  119

Query  127  ARDIWRSLEKDVFPAVGELPVQQIKARTLVEALEPVKARGALETVRRLVQRINEIMIFAV  186
              +I  ++EKD+FP +G  P+ +IK+  L+EAL  +  RGALE +R++ QR  E+  +A+
Sbjct  120  RDEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAI  179

Query  187  NTGLIDANPASGVGMAFEKPKKQNMPTLRPEELPNLMRSLAMSNLSVSTRCLIEWQLLTL  246
             TG  D NPA++++ A+  PKK + P L ++ELP+++  LA    S+ T+   +  +LT 
Sbjct  180  VTGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTG  239

Query  247  VRPSEASGTQWAEIDLENKLWTIPAGRMKAKREHIVPLSVRALDILEIMKPISAHREYVF  306
            VR  E   ++W +ID+E KLW IPA  MK KR HIVPLS + + ++  + PIS H+  VF
Sbjct  240  VRTQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHPLVF  299

Query  307  PSRNNPKQPMNSQTANAALKRIGYGGKLVAHGLRSIASTAMNEEGFNPDVIEAALAHSDK  366
             +RN+P++P++ ++ N A+  +GY G+L +HG+R   ST ++E+GFN+  IE  LAH DK
Sbjct  300  IGRNDPRKPISKESINQAIELLGYKGRLTGHGFRHTMSTILHEQGFNSAWIEMQLAHVDK  359

Query  367  NEVRKAYNRSTYLYQRIDLMNWWANFV  393
            N +R +YN++ YL  R ++M+W A+++
Sbjct  360  NSIRDTYNHALYLDGRREMMQWYADYI  386

571) t2647 in NC_004631


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  228 bits (850),  Expect = 4e-61, Method: Compositional matrix adjust.
 Identities = 156/387 (41%), Positives = 252/387 (66%), Gaps = 2/387 (0%)

Query  7    PLTNTEVLRAKALEKDLTLHDGDGLFLLVKTNGKKLWRFRYQRPATKQRTMMGLGTFPal  66
            +LT+  V  AK+ +K   L DG+G++LL++TNG K WR +Y R A K++ M+++G +P +
Sbjct  2    ALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKY-RFAGKEK-MLSIGVYPDV  59

Query  67   sladarrlradylsllaNGIDPqiqaeiaeeqqqiaqDSIFTTVAANWFQLKSKSVTPDY  126
            +LADAR  R++   LLA G DP          QQ++  + F ++A +W QLK+   +  Y
Sbjct  60   TLADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRY  119

Query  127  ARDIWRSLEKDVFPAVGELPVQQIKARTLVEALEPVKARGALETVRRLVQRINEIMIFAV  186
              +I  ++EKD+FP +G  P+ +IK+  L+EAL  +  RGALE +R++ QR  E+  +A+
Sbjct  120  RDEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAI  179

Query  187  NTGLIDANPASGVGMAFEKPKKQNMPTLRPEELPNLMRSLAMSNLSVSTRCLIEWQLLTL  246
             TG  D NPA++++ A+  PKK + P L ++ELP+++  LA    S+ T+   +  +LT 
Sbjct  180  VTGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTG  239

Query  247  VRPSEASGTQWAEIDLENKLWTIPAGRMKAKREHIVPLSVRALDILEIMKPISAHREYVF  306
            VR  E   ++W +ID+E KLW IPA  MK KR HIVPLS + + ++  + PIS H+  VF
Sbjct  240  VRTQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHPLVF  299

Query  307  PSRNNPKQPMNSQTANAALKRIGYGGKLVAHGLRSIASTAMNEEGFNPDVIEAALAHSDK  366
             +RN+P++P++ ++ N A+  +GY G+L +HG+R   ST ++E+GFN+  IE  LAH DK
Sbjct  300  IGRNDPRKPISKESINQAIELLGYKGRLTGHGFRHTMSTILHEQGFNSAWIEMQLAHVDK  359

Query  367  NEVRKAYNRSTYLYQRIDLMNWWANFV  393
            N +R +YN++ YL  R ++M+W A+++
Sbjct  360  NSIRDTYNHALYLDGRREMMQWYADYI  386

572) Pmen_3996 in NC_009439


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  228 bits (848),  Expect = 5e-61, Method: Compositional matrix adjust.
 Identities = 165/386 (43%), Positives = 255/386 (67%), Gaps = 10/386 (2%)

Query  1    MPLTDVKIRQAKPGPSPIKMADGAGLHLEVRPNGSKLWRYRYRLDGKENTFAIGAYPDVS  60
            M+LTD+K++ AKP   P K+ADG+G+ L +  NGSK WR +YR+ GKE+ ++IG YPDV+
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   LadaraerdvarehvraGRHPSHVRQTEKATQLAENRNTFKVVAEEWIEDRLGQRSQTYR  120
            LADAR  R  AR  + AG +P++ ++ EK +Q    +NTF  +A EW + + +++S  YR
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  121  DQCRRAFVNDVYPAIGRMPMREITAAQVLAILRKMDGRGATTLALQVRQWISAVFRFGVa  180
            D+   +F +D++P IG+ P+ EI + ++L  LRKM+ RGA     +VRQ+ + VFR+++ 
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  181  tlradadpaaalkgaIQRKAINHSQPMSREQLGEYLAAVDRYKGHRGTVIALKLLPMLFT  240
            T RAD +PA+ L +A+      H   ++ ++L ++L  +  Y G   T  A +++ +   
Sbjct  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV  240

Query  241  RTGELRCARWPEFDLDGAMWEIPAERMKMRRKHLVPLPHQAVELLRELRKITAGE-LLFP  299
            RT ELR ARW ++D++  +WEIPAE MKM+R H+VPL++Q + L+++L  I+  + L+F 
Sbjct  241  RTQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHPLVFI  300

Query  300  GLRDPARPISPTTLNRALEYLDMRGW-HCHDFRATASTHLYEMG---RWRSEVIELQLAH  355
            G  DP +PIS  ++N+A+E L+ +G+   H+FR T ST L E G    W    IE+QLAH
Sbjct  301  GRNDPRKPISKESINQAIELLGYKGRLTGHGFRHTMSTILHEQGFNSAW----IEMQLAH  356

Query  356  VERNKVRAAYNHAQYLAERREMMQAW  381
            V++N +R +YNHA YL  RREMMQ W
Sbjct  357  VDKNSIRDTYNHALYLDGRREMMQ-W  381

573) ELI_04005 in NC_007722


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  228 bits (848),  Expect = 5e-61, Method: Compositional matrix adjust.
 Identities = 167/415 (41%), Positives = 262/415 (64%), Gaps = 31/415 (7%)

Query  1    MALSEIQIKKAKAAERPYKLADGEGLFLLVQKNGSKLWRLKYRYHGKEKLLSFGAYPEVG  60
            MAL++I++K AK+ ++PYKLADG G++LL++ NGSK WR+KYR+ GKEK+LS+G YP+V 
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   IAAARELKKVAKGVLAEGRDP----MVHKPGRDFEEAKTFRAIATMWHQNRASSLDPAHA  116
            +A ARE +  A+ +LA G DP      +K +++    +TF AIA  WHQ +A        
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  117  KRVWSRMDQDVFPDLGELMMHEITPPEVLKVIRKIEERGALDISRRAKQCIGQVFQFAIA  176
              +    ++D+FP +G   + EI P  +L  +RK+E RGAL+  R+ +Q  G+VF++AI 
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  177  SGLCDSDPTAHLRGALKPRPRVKHMAKLPLAQLPELMIKIGQYQEEGERRSEITRAALNF  236
            +G  D +P+++L +AL    +V H + L   +LP+++  ++ Y       S IT++A ++
Sbjct  181  TGRADYNPAPDLASALATPKKV-HFPFLTANELPHFLNDLAGYTG-----SIITKTATQI  234

Query  237  ALLTWVRTKELRFAKKHEFEDMGGPSPVWRIGADRMKMGREHIVPLSRQAASLAQDL--I  294
             +LT VRT+ELRFA+    ED++  + +W I A+ MKM R HIVPLS Q   L ++L  I
Sbjct  235  IMLTGVRTQELRFAR---WEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPI  291

Query  295  SKSEGKYVFPGQK-PKMPLSENTMIYGLYRLGYHGRQTVHGFRGLASTWANEQLVEVGDP  353
            SK +   VF G++ P+ P+S +++  ++  LGY GR T HGFR   ST  +EQ       
Sbjct  292  SKHHP-LVFIGRNDPRKPISKESINQAIELLGYKGRLTGHGFRHTMSTILHEQ-------  343

Query  354  PMWIRRYHEDWVELQLAHSEENEVRGAYNAAEYLAPRRAMLQDW-ADFLDSIGGK  407
                  ++  W+E+QLAH + N +R++YN A YL  RR M+Q W AD++DS++++
Sbjct  344  -----GFNSAWIEMQLAHVDKNSIRDTYNHALYLDGRREMMQ-WYADYIDSLSSR  392

574) PAU_01267 in NC_012962


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  227 bits (846),  Expect = 5e-61, Method: Compositional matrix adjust.
 Identities = 140/344 (41%), Positives = 224/344 (66%), Gaps = 1/344 (0%)

Query  1    MMGLGAFPALSLADARGLRADYLSLLANGTDPqvqaevveeqRQIALDSIFSTVAANWFQ  60
            M+++G +P ++LADAR  R++   LLA G DP          +Q++L + F ++A +W Q
Sbjct  50   MLSIGVYPDVTLADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQ  109

Query  61   LKSKSVTPDYAKDIWRSLEKDVFPAIGEIPVQQIKARTLVEALEPIKARGALETVRRLVQ  120
            LK+   +  Y  +I  ++EKD+FP IG  P+ +IK+  L+EAL  +  RGALE +R++ Q
Sbjct  110  LKADRWSLRYRDEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQ  169

Query  121  RINEIMIYAVNTGLIDVNPASGVGMAFEKPKKQNMPTLRPEELPKLMRSLVMSNLSVPTR  180
            R  E+  YA+ TG  D NPA++++ A+  PKK + P L ++ELP ++  L     S+ T+
Sbjct  170  RCGEVFRYAIVTGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITK  229

Query  181  CLIEWKLLTLVRPSEASGARWAEIDLDAKLWTIPAERMKAKREHIVPLSPQALEILDVMK  240
               +  +LT VR  E   ARW +ID+++KLW IPAE MK KR HIVPLS Q + ++  + 
Sbjct  230  TATQIIMLTGVRTQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLE  289

Query  241  PISAHREHVFPSRNDPKQAMNSQTANAALKRIGYGGKLVAHGLRSIASTAMNEAGLNPDV  300
            PIS H+  VF +RNDP+++++ ++ N A+  +GY G+L +HG+R   ST ++E G+N+  
Sbjct  290  PISKHHPLVFIGRNDPRKPISKESINQAIELLGYKGRLTGHGFRHTMSTILHEQGFNSAW  349

Query  301  IEAALAHSDKNEVRKAYNRSTYLTQRKDLMNWWGLYFIHSMSTH  344
            IE  LAH DKN +R +YN++ YL  R+++M+W + Y I+S+S++
Sbjct  350  IEMQLAHVDKNSIRDTYNHALYLDGRREMMQWYADY-IDSLSSR  392

575) Msil_1557 in NC_011666


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  227 bits (845),  Expect = 9e-61, Method: Compositional matrix adjust.
 Identities = 168/402 (42%), Positives = 261/402 (65%), Gaps = 23/402 (5%)

Query  1    MALTDMEIRAAKPSARIVKLSDGGGLQLWLMPDGAKRWRLAYRFAGGQKLLAIGVYPAIG  60
            MALTD+ +++AKP  +  KL+DGGG+ L +  +G+K WR+ YRFAG +K+L+IGVYP + 
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   LrearearegaKRILAEGNDPslakklakaakatasaNTFDAVSTE--LLDKKR-----R  113
            L +ARE R  A+++LA G DP+ AKK  K A+  +  NTF+A++ E   L   R     R
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  114  EGKAERTLDKLGWLFSLARPAIGVRPIAEISAREILAVLRSVESRGTHETAKRLRATISE  173
            +   + T++K   +F    P IG RPIAEI +  +L  LR +E RG+ E  +++R   +E
Sbjct  121  DEIID-TFEKD--IF----PYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGE  173

Query  174  VFRYAVATDRADSDPTVALKGALAAPIVKHRAAIIEPKAFGGLLRAIATYEGSPETCaal  233
            VFRYA+ T+RAD +P+  L +ALA+P  K + +++ ++ +  +L  +A Y GS  T +A 
Sbjct  174  VFRYAIVTGRADYNPAPDLASALATPK-KVHFPFLTANELPHFLNDLAGYTGSIITKTAT  232

Query  234  ellalTFVRPGELRAAEWVEFDFDNGVWSIPGEKMKMKRPHRVPLAARAVGLLQELQTIT  293
            +++ LT VR  ELR A W ++DF+  +W IP+E MKMKRPH VPL+ + + L+++L+ I+
Sbjct  233  QIIMLTGVRTQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPIS  292

Query  294  GHGKFLFPSVRSAARCMSENTINAALRRLGFEKDEMTGHGFRSAASSMLNESGL---WNP  350
             H  ++F +   + + +S ++IN A+  LG+ K+ +TGHGFR + S++L+E G+   W  
Sbjct  293  KHHPLVFIGRNDPRKPISKESINQAIELLGY-KGRLTGHGFRHTMSTILHEQGFNSAW--  349

Query  351  DAIERQLAHVDNDSVRRAYARADYWDERIRMMSWWADRCEEL  392
              IE QLAHVD++S+R +Y +A Y D R  MM W AD  + L
Sbjct  350  --IEMQLAHVDKNSIRDTYNHALYLDGRREMMQWYADYIDSL  389

576) BCAL1118 in NC_011000


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  226 bits (841),  Expect = 2e-60, Method: Compositional matrix adjust.
 Identities = 166/400 (42%), Positives = 254/400 (64%), Gaps = 16/400 (4%)

Query  1    MPLTDVTIRKASPREKPYRLADGGGMYLEVSPSGGKYWRFKYRFAGKEKRLALGVYPDVP  60
            M+LTD+ ++ A P++KPY+LADGGGMYL ++ +G+KYWR KYRFAGKEK L++GVYPDV 
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   LaaarekrdearkTLAGGVDPGeakkaekraallaaTNSFEAVALGWMEERKPYVTSGSW  120
            LA AREKR EARK LA+G DPGEAKK EK A  ++  N+FEA+A  W +     + ++ W
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQ-----LKADRW  115

Query  121  G-----KTKARFVKDVFPWLGKRPIAEIDAPEVLTVLKRIDSRGARFTAHKVRSEISRVF  175
            +          F KD+FP +GKRPIAEI +  +L  L++++ RGA    +KVR   + VF
Sbjct  116  SLRYRDEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVF  175

Query  176  RYGIKEGYCKVDAARDLTDAIPPAQTTHFASITDPEKVGAMLRAFDGFSGTFPVLCALKL  235
            RY+I  G    ++A DL+ A++ ++  HF+ +T  E +   L  + G++G++    A ++
Sbjct  176  RYAIVTGRADYNPAPDLASALATPKKVHFPFLTANE-LPHFLNDLAGYTGSIITKTATQI  234

Query  236  APMLFTRPGELRKAEWAQFDLDKGEWRYL--VTKTKTEHLVPLAQQAIQILRELHALTGS  293
              +   R  ELR A W ++D++   W     V K K  H+VPL++Q I ++++L++++  
Sbjct  235  IMLTGVRTQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKH  294

Query  294  GRYVFPGARSALRPMSDAAVNAALRRLGYDTRTEITGHGFRAMARTILHEELEQKPEVIE  353
               VF G   + +P+S  ++N A+  LGY  R  +TGHGFR    TILHE+   ++  IE
Sbjct  295  HPLVFIGRNDPRKPISKESINQAIELLGYKGR--LTGHGFRHTMSTILHEQ-GFNSAWIE  351

Query  354  HQLAHAVPDNLGKAYNRTKFIKERRAMMQKWADYLEKLKA  393
             QLAH   +++  +YN++ ++  RR MMQ  ADY++ L +
Sbjct  352  MQLAHVDKNSIRDTYNHALYLDGRREMMQWYADYIDSLSS  391

577) Dd703_3223 in NC_012880


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  226 bits (841),  Expect = 2e-60, Method: Compositional matrix adjust.
 Identities = 159/391 (41%), Positives = 253/391 (65%), Gaps = 6/391 (1%)

Query  7    PLTDTEIKAAKPQEADYTLHDGDGLQLLIKSSGRKVWQMRYYRPLTKKRVKLTFGPYPEV  66
            +LTD  +K+AKP++  Y L DG+G+ LLI+++G K W+M+Y   ++ K   L++G YP+V
Sbjct  2    ALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKY--RFAGKEKMLSIGVYPDV  59

Query  67   TladarqrrtaarallVKDIDPYEHQLSLRKQALETQSNTFKVVAERWLQLKKSSVTADY  126
            TLADAR++R+ AR LL  + DP E +   +     +  NTF  +A  W QLK    +  Y
Sbjct  60   TLADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRY  119

Query  127  ASDIRRSLEKDIFPAIGDISITDIKARTLVQAIQPVQARGALETVRRLCQRINEVMIYAM  186
              +I  ++EKDIFP IG  +I++IK+  L++A++ ++ RGALE +R++ QR  EV  YA+
Sbjct  120  RDEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAI  179

Query  187  NVGLIDAAPSVNISKAFEKPQKKHMPSIRPDQLPQLMQTMR--LANIELPTCCLFMWQLL  244
              G  D  P+ +++ A+  P+K H P + +++LP++++ +    ++I   T   ++  +L
Sbjct  180  VTGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQII--ML  237

Query  245  TLTRPVEAAETRWQEIDLDAKEWRIPAERMKMKRVHIVPLSEQALAILELMRPLSSHREY  304
            T  R  E   +RW++ID+++K W IPAE MKMKR HIVPLSEQ + ++  + P+S H+  
Sbjct  238  TGVRTQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHPL  297

Query  305  VFPSRIKPLQPMNSQTVNAALKRAGLGGILVSHGMRSIASTALNEQGFPPDVIEAALAHV  364
            VF +R  P +P++ +++N A+   G  G L +HG R   ST L+EQGF +  IE  LAHV
Sbjct  298  VFIGRNDPRKPISKESINQAIELLGYKGRLTGHGFRHTMSTILHEQGFNSAWIEMQLAHV  357

Query  365  DKNEVRRAYNRSDYLEQRRPMMQWWADFVKA  395
            DKN +R +YN++ YL+ RR MMQW AD++ +
Sbjct  358  DKNSIRDTYNHALYLDGRREMMQWYADYIDS  388

578) XCV2217 in NC_007508


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  225 bits (839),  Expect = 3e-60, Method: Compositional matrix adjust.
 Identities = 172/408 (43%), Positives = 262/408 (65%), Gaps = 29/408 (7%)

Query  1    MPLTDTAIRKTKPGAVPLKLRDGGGLYLLMRPDGARWWRWDYRRPVTGKRNTLSLGTYPD  60
            M+LTD  ++ +KP   P KL DGGG+YLL+  +G++ WR  YR   +GK + LS+G YPD
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYR--FAGKEKMLSIGVYPD  58

Query  61   TGladarekrdaarkllaaGVDPGEQRKQAKQERAALVDAAGETFEVVAREWMARQTVAR  120
              LADAREKR  ARKLLAAG DPGE +K+ K  +     +  +TFE +AREW   ++   
Sbjct  59   VTLADAREKRSEARKLLAAGGDPGEAKKEEKIAQQM---SLKNTFEAIAREWHQLKA---  112

Query  121  VTAEKNRW-------LLETF---LFPEIGSRPIGEITPRELLDALRKIEATGKLETAARA  170
                 +RW       +++TF   +FP IG RPI+EI P  LL+ALRK+E  G LE   + 
Sbjct  113  -----DRWSLRYRDEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKV  167

Query  171  KIKAGQVFRYAMLEGKAEIDPTaslrgalkaakarhhaaVTEPAKIGQLLRAIEGFSGQP  230
            + + G+VFRYA++ G+A+ +P++ L +AL ++K  H + +T +  + ++L  + G++G  
Sbjct  168  RQRCGEVFRYAIVTGRADYNPAPDLASALATPKKVHFPFLT-ANELPHFLNDLAGYTGSI  226

Query  231  VTHAALKLAPLVFVRPGELRAAEWAEIDLDAAMWRIRPERMKMKAAHLVPLSSQAVAILR  290
            +T +A ++  L  VR  ELR A W +ID+++ +W I +E MKMK +H+VPLS Q + +++
Sbjct  227  ITKTATQIIMLTGVRTQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFK  286

Query  291  DLHALTGGGHHVFPGLR-PNRPMSENTVNAALRALGYSGDEMTGHGFRSMAATRLNELGW  349
            +L++++     VF G   P +P+S +++N A+  LGY G  +TGHGFR   +T L+E G 
Sbjct  287  QLEPISKHHPLVFIGRNDPRKPISKESINQAIELLGYKG-RLTGHGFRHTMSTILHEQGF  345

Query  350  NADAVERQLAHAETNKVREAYTHAAQYLHERVRMMQAW-ADYLDGLRS  396
            N+  +E QLAH + N +R++Y HA  YL+ R  MMQ W ADY+D+L S
Sbjct  346  NSAWIEMQLAHVDKNSIRDTYNHAL-YLDGRREMMQ-WYADYIDSLSS  391

579) Xaut_2233 in NC_009720


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  224 bits (836),  Expect = 4e-60, Method: Compositional matrix adjust.
 Identities = 157/389 (41%), Positives = 246/389 (64%), Gaps = 12/389 (3%)

Query  1    MALTDLALRNAKPRDKAYKLFDGGGLHLLVNPNGSRIWRLAYRFAGKPKQISFGPYPTVS  60
            MALTD+ ++ AKP+DK+YKL DGGG+ LL+N NGS+ WR+ YRFAGK K +S+G YP V+
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   LAEAREKREDAKKQLLDNKDPTTVRKVEKVTAAISEGNTFSRLVGEY----IERLEMRNS  116
            LA+AREKR +A+K L    DP   +K EK++  +S  NTF  +  E      +R  +R  
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  117  APATVTKNRWLLENLAGPALGRRPISEITPFEVLAVLQQVersgrresarrlrsaIGSVF  176
                 T     +E+   P +G+RPI+EI P  +L  L+++E+ G  E  R++R   G VF
Sbjct  121  DEIIDT-----FEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVF  175

Query  177  RFAIATLRAQHDPTSALKDALERPKVKHRSALTDPKQLGGLMRSIDEYDGWPTLRSAMLF  236
            R+AI T RA+ +P++ L  AL  PK  H + LT +++L  ++  +  Y G    ++A  +
Sbjct  176  RYAIVTGRADYNPAPDLASALATPKKVHFPFLT-ANELPHFLNDLAGYTGSIITKTATQI  234

Query  237  TALTFARPGEVRGARWREIDLDKAVWSIPAERMKMRRAHVVPLSRQALEVLSEIRPLSGS  296
              LT  R  E+R ARW +ID++  +W IPAE MKM+R+H+VPLS Q + ++ ++ P+S  
Sbjct  235  IMLTGVRTQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKH  294

Query  297  SELIFPSIRSNKKILSENAMNSALRRMGFTQEEMTAHGFRAAASSILNEKGHSPDVIEAA  356
              L+F +    +K +S +++N A+  +G+ +  +T+HGFR + S+IL+E+G ++  IE  
Sbjct  295  HPLVFIGRNDPRKPISKESINQAIELLGY-KGRLTGHGFRHTMSTILHEQGFNSAWIEMQ  353

Query  357  LGHLDQNEVRRAYNRATYWPERVVLMQAW  385
            L+H+D+N +R +YN+A Y   R  +MQ W
Sbjct  354  LAHVDKNSIRDTYNHALYLDGRREMMQ-W  381

580) Sala_0444 in NC_008048


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  223 bits (831),  Expect = 1e-59, Method: Compositional matrix adjust.
 Identities = 170/410 (42%), Positives = 262/410 (64%), Gaps = 29/410 (7%)

Query  1    MPLTETQAKNAKPRERAYKLADSEGLFLLVQPNGTKLWRMKYRFAGKEKLLSFGAYPALG  60
            M+LT+ + K AKP++++YKLAD+ G++LL++ NG+K WRMKYRFAGKEK+LS+G YP + 
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   IaaardkrkaakallaEGKDPMKAKREV-ISEN---GDTFYMVAKRWHENRQSALNPAHA  116
            +A AR+KR  A+ LLA G DP  AK+E  I+++    +TF  +A+ WH+ +    +    
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  117  ERVWSRMERDVFPSLGQRLIHEITAPEVLEMIRKIEIRGALDISRRAKQGVGQVFQFAIA  176
            + +    E+D+FP +G+R I EI +  +LE +RK+E RGAL+  R+ +Q  G+VF++AI 
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  177  CGLASSDPTAHLSGALKPRPRVKHMSRLPLDEVPAFLEKLRAYQEEGDRRSAITRDAVLF  236
             G A  +P+++L++AL    +V H + L  +E+P FL+ L +Y       S IT+ A  +
Sbjct  181  TGRADYNPAPDLASALATPKKV-HFPFLTANELPHFLNDLAGYTG-----SIITKTATQI  234

Query  237  ALLTWVRTKELRLAVKSEFENLDGTDTVWRIPAARMKMGREHLVPLSAQAALIARKMVST  296
             +LT VRT+ELR+A     E++D    +W IPA  MKM R H+VPLS Q  ++ +++ + 
Sbjct  235  IMLTGVRTQELRFA---RWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPI  291

Query  297  ATGDHL-FPG-THPDKPLSENTMIYALYRLGYHSRQTIHGFRGLASTWANEQLVEFGKPA  354
            +  + L F G  +P KP+S +++  A+  LGY +R T HGFR   ST  +EQ        
Sbjct  292  SKHHPLVFIGRNDPRKPISKESINQAIELLGYKGRLTGHGFRHTMSTILHEQ--------  343

Query  355  MWIRKYHEDWVEMQLAHSEKNDVRGAYNAAEYLAPRRRMMQDW-ADFLDG  403
                 ++  W+EMQLAH +KN +R++YN A YL  RR MMQ W AD++D+
Sbjct  344  ----GFNSAWIEMQLAHVDKNSIRDTYNHALYLDGRREMMQ-WYADYIDS  388

581) PP1Y_AT14494 in NC_015580


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  222 bits (828),  Expect = 2e-59, Method: Compositional matrix adjust.
 Identities = 171/412 (42%), Positives = 257/412 (63%), Gaps = 33/412 (8%)

Query  1    MPLTETQARNSKPSDRAYKLADGEGLFLFVQPNGSKLWRMKYRFAGKEKLLSFGAYPDLG  60
            M+LT+ + + +KP D++YKLADG G++L+++ NGSK WRMKYRFAGKEK+LS+G YPD+ 
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   IaaarakrtaakallaEGKDPTKS-KGEVISQE---SATFFDVAKRWHENRKSALNAAHA  116
            +A AR KR+ A+ LLA G DP  + K E I+Q+     TF  +A+ WH+ +    +    
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  117  ERVWSRMERDVFPAIGEKLVHEITAPDVLAMIRKIEARGALDISRRAKQGVGQVFQFAIA  176
            + +    E+D+FP IG + + EI +  +L  +RK+E RGAL+  R+ +Q  G+VF++AI 
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  177  CGLASNDPTTHLRGALKPRPRVKHMSRLPLSELPAFIEKLHAYQEDGERRSSITRDAVLF  236
             G A  +P+ +L +AL    +V H + L  +ELP F++ L +Y       S IT+ A  +
Sbjct  181  TGRADYNPAPDLASALATPKKV-HFPFLTANELPHFLNDLAGYTG-----SIITKTATQI  234

Query  237  ALLTWVRTKELRFA--AKSEFEDLGGKSPVWRIPAERMKMGREHLVPLSQQATHIAKSMI  294
             +LT VRT+ELRFA     +FE     + +W IPAE MKM R H+VPLS+Q   + K + 
Sbjct  235  IMLTGVRTQELRFARWEDIDFE-----TKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLE  289

Query  295  AAAPGE-FLFPG-NGPNKPLSENTMIYALYRLGYHSRQTVHGFRGLASTWANEQLVEFGK  352
            + +  + ++F G N+P KP+S +++  A+  LGY +R T HGFR   ST  +EQ      
Sbjct  290  PISKHHPLVFIGRNDPRKPISKESINQAIELLGYKGRLTGHGFRHTMSTILHEQ------  343

Query  353  PPMWIRKYHEDWVELQLAHSEKNDVRGAYNAAEYLAPRRRMMQDW-ADYLSG  403
                   ++  W+E+QLAH +KN +R++YN A YL  RR MMQ W ADY+ +
Sbjct  344  ------GFNSAWIEMQLAHVDKNSIRDTYNHALYLDGRREMMQ-WYADYIDS  388

582) PCC21_004050 in NC_018525


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  221 bits (823),  Expect = 5e-59, Method: Compositional matrix adjust.
 Identities = 166/410 (41%), Positives = 257/410 (63%), Gaps = 31/410 (7%)

Query  1    MKLNARQVETAKPKEKTYKMADGGDLYLEITTRGSKYWRMKYRRPIDKKEDRLAFGVWPT  60
            M L   +V TAKPK+K YK+ADGG++YL I T GSKYWRMKYR  +  KE  L++GV P 
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYR--FAGKEKMLSIGVYPD  58

Query  61   VTladarakrdeakkllVQGIDPKAEQKEVQAESEGAY--TFETVARQQQALGDYH----  114
            VTLADAR KR EA+KLL  G DP   +KE +   + +   TFE++AR+ + L   +    
Sbjct  59   VTLADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLR  118

Query  115  -RSRVIRYLEMYISPEIGASDIRKLKTSHLLAPIKAVDASGKHDVAQRLQQRITAIMRYA  173
             R  +I  +E  I P IG   I  +K   LL +++ ++  G  +  ++++QR   + RYA
Sbjct  119  YRDEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYA  178

Query  174  VQNDYIESNPAGDMAGALTTTKARHYPALPSVRFPEFLSRLAAYRGRLLTRCAVELMLLT  233
            +  +  + NPA D+A+AL+T K  H+P L +  +P+FL+ LA+Y G ++T+ A ++++LT
Sbjct  179  IVTGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLT  238

Query  234  FVRSSELRFAQWREFDFDSAEWRIPAQREEIEGVRYSYRGMKMKEEHVVPLSNQALAVLA  293
             VR+ ELRFA+W ++DF++  W IPA+             MKMK  H+VPLS+Q + ++ 
Sbjct  239  GVRTQELRFARWEDIDFETKLWEIPAE------------VMKMKRPHIVPLSEQVIMLFK  286

Query  294  KLHALSGDNPRLFPSDHNPEKVMSENTVNSALRTMGYDTKTEVCGHGFRTIARGALGESG  353
            +L+++S ++P +F + ++P K +S +++N A+  +GY  K  + GHGFR      L E G
Sbjct  287  QLEPISKHHPLVFIGRNDPRKPISKESINQAIELLGY--KGRLTGHGFRHTMSTILHEQG  344

Query  354  L---WSDDAIERQLSHSERNNVRAAYIHTSEYLDERRLMVQWWADYLDII  400
            +   W    IE QL+H ++N++R +Y H+  YLD RR M+QW ADY+D +
Sbjct  345  FNSAW----IEMQLAHVDKNSIRDTYNHAL-YLDGRREMMQWYADYIDSL  389

583) SBOV45841 in NC_022241


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  220 bits (818),  Expect = 1e-58, Method: Compositional matrix adjust.
 Identities = 149/360 (42%), Positives = 227/360 (64%), Gaps = 18/360 (5%)

Query  1    MALTDRAIVHAKPCGKPYKLSDSHGLYLLVNPNGSKRWYIKYRFVNKEKKLALGPYPLLT  60
            MALTD  +  AKP +KPYKL+D+ G+YLL+N NGSK W +KYRF  KEK L++G YP +T
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   LAQARRMREEAQLLLISGIDPSAHRKAERLA--ITPEHTFESVAREW-VISNVNWSAEHK  117
            LA+AR  R EA+ LL +G DP+  +K E++A  ++  +TFE++AREW  +    WS   +
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  118  KRVLRYFELYVFPTNGSCDITKMKVKDLLVPIKEVEKAGKLDVASRLQQRTACVMRYAVQ  177
              ++  FE  +FP  G   I+ +K   LL +++ +EK G L+   +++QR + V RYA+ 
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  178  NGIIDHNPASDLTGAVSTPKVRHHPALDLNLIPDFLDRIDDYKGRqltqlavklalllFI  237
             G  D NPA+DL++A++TPK  H P L  N +P+FL+ + +Y G  +T+ A ++ +L  +
Sbjct  181  TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV  240

Query  238  RSSELRFARWDEIDLRNAMWTIPAEREPIPGVKYSARGAKMHSPHLVPLSRQAIELLHEV  297
            R+ ELRFARW++ID+   +W IPAE              KM  PH+VPLS Q I L+ ++
Sbjct  241  RTQELRFARWEDIDFETKLWEIPAE------------VMKMKRPHIVPLSEQVIMLFKQL  288

Query  298  RQHCRPGTELVFPGDHNYRKPMSENTINKALRVMGYDTQKDVCGHGFRTMACSALVESGL  357
                +    LVF G ++ RKP+S ++IN+A+ ++GY  +  + GHGFR    + L E G+
Sbjct  289  EPISKHHP-LVFIGRNDPRKPISKESINQAIELLGYKGR--LTGHGFRHTMSTILHEQGF  345

584) BTI_453 in NC_021173


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  220 bits (818),  Expect = 1e-58, Method: Compositional matrix adjust.
 Identities = 160/396 (41%), Positives = 256/396 (65%), Gaps = 8/396 (2%)

Query  1    MPLTDVAIRKAAPREKPYRLADSGGMYLEVSPAGGKYWRLKYRFLGKEKRLALGVYPDVS  60
            M+LTD+ ++ A P++KPY+LAD+GGMYL ++  G+KYWR+KYRF GKEK L++GVYPDV+
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   laaarekrddarkklaaGVDPSEakkadkraarlaaTNSFEAVALGWMDELKPYV-TAGS  119
            LA AREKR +ARK LAAG DP+EAKK +K A +++  N+FEA+A  W ++LK+   +   
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREW-HQLKADRWSLRY  119

Query  120  MAKTKARFEKDVFPWIGKRPVAEIDAPEVLTVLKRIDSRGARFTAHKIRGEISRAFRYGI  179
                   FEKD+FP IGKRP+AEI +  +L  L++++ RGA    +K+R   +  FRY+I
Sbjct  120  RDEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAI  179

Query  180  KEGYCKFDPARDLVSAIPPAQTTHFASITEPAKVGAMLRAFDGFSGTFPVLCALKLAPML  239
              G   ++PA DL SA++ ++  HF+ +T +  +   L  + G++G++    A ++  + 
Sbjct  180  VTGRADYNPAPDLASALATPKKVHFPFLT-ANELPHFLNDLAGYTGSIITKTATQIIMLT  238

Query  240  FTRPGELRKAEWAQFNLDKGEWRYL--VTKTSTEHLVPLAAQAVQILRELHALTGHGRYV  297
              R  ELR A W +++++   W     V K    H+VPL+ Q + ++++L++++ H   V
Sbjct  239  GVRTQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHPLV  298

Query  298  FPGARTAQRPMSDAAVNAALRRLGYDTRTEITGHGFRAMARTILHEELEQKPEVIEHQLA  357
            F G   +++P+S  ++N A+  LGY  R  +TGHGFR    TILHE+   ++  IE QLA
Sbjct  299  FIGRNDPRKPISKESINQAIELLGYKGR--LTGHGFRHTMSTILHEQ-GFNSAWIEMQLA  355

Query  358  HAVPDTLGKAYNRTKFIKERKAMMQKWADYLERLKA  393
            H   +++  +YN++ ++  R+ MMQ  ADY++ L +
Sbjct  356  HVDKNSIRDTYNHALYLDGRREMMQWYADYIDSLSS  391

585) BDL_973 in NC_021884


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  220 bits (819),  Expect = 7e-59, Method: Compositional matrix adjust.
 Identities = 131/288 (46%), Positives = 198/288 (69%), Gaps = 3/288 (1%)

Query  1    MPLTDKAVKNAKAGDKPVKLFDGGGMFLLVTPAGQRYWRLKYRVNGKEKLLALGVYPDVS  60
            M+LTD  VK AK+ DKP KL DGGGM+LL+   G +YWR+KYR  GKEK+L++GVYPDV+
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   LAVARKKRDEAREKLAAGIDPNEAKREVKRTARIAAASSFEAVAREWFDNQRVGWTETYA  120
            LA AR KR EAR  LAAG DP EAK+E K + +++  ++FEA+AREW + +   W+  Y 
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  121  EKVIHSLEIDAFPKIGSRPISSIEAPEMLEIIRAIEARGVRETAKRLLQRSRAVFQYAIM  180
            + +I+++E D FP IG RPI+ I +  +LE +R +E RG  E  +++ QR   VF+YAI+
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  181  TGRCTRNPSADIDAETILKKGPGVQHMARVKPLEIPQLMRDIAAYPGEPVTRLALELMAL  240
            TGR   NP++D+ +       P   H + + + E+P+++ D+A+Y G  +T+ A +++ L
Sbjct  181  TGRADYNPAPDLASALA---TPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIML  237

Query  241  TFVRTKEMIRAQWAEFDEAAAEWRVPPERMKMRDPHIVPLSRQSLVVL  288
            T VRT+E+  A+W ++D  +  W +P+E MKM+ PHIVPLS Q ++++
Sbjct  238  TGVRTQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLF  285

586) PFLU1878 in NC_012660


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  219 bits (815),  Expect = 2e-58, Method: Compositional matrix adjust.
 Identities = 167/405 (42%), Positives = 261/405 (65%), Gaps = 16/405 (3%)

Query  1    MALTDTAIKQAKPASKPYTLTDGDGLSLQVPTTGSKRWHFRFYWHDKQLRISLGTYPDVS  60
            MALTD  +K AKP  KPY L+DG+G+ L + T GSK W+ ++   +K+  +S+G YPDV+
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   LKearrrreaaraLVASNIDPRSHRRAERQKASRAVKNTFEAVADRWHEFRSKKLTkskk  120
            L +AR +R  AR L+A+  DP   ++ E+     ++KNTFEA+A  WH++++ + +   +
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  121  gsagqaskYLKKDMLPCLGDLPIADISRGDVLELIRRIERRGALVSARKVRTWLNQIFRF  180
            +   ++   + KD++P +G  PIA+I    +LE +R++E+RGAL   RKVR +  ++FR+
Sbjct  121  DEIIDT---FEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRY  177

Query  181  AMAEGLIDVNPAADLDIVAETPRPVRHNPFLQVNELPGLLRTVTHYEGAEKtrlgirlll  240
            A+  G  D NPA+DL     TP+ V H PFL  NELP +L  ++ Y G+  T+ + ++++
Sbjct  178  AIVTGRADYNPAPDLASALATPKKV-HFPFLTANELPHFLNDLAGYTGSIITKTATQIIM  236

Query  241  ltgvrtgelrAATPDQFDFDKGIWRVPPEGVKQLRNRVRTQGNEIPPYVIPLSTQAIAIV  300
            LTGVRT ELR A  +++DF+  +W +P+E +K  R           P ++PLS Q I + 
Sbjct  237  LTGVRTQELRFARWEDIDFETKLWEIPAEVMKMKR-----------PHIVPLSEQVIMLF  285

Query  301  QRLMQLRTRGARYLLVHRYEPQEMISENTLNTAISRMGYKGRLTGHGIRATISTALNEVG  360
            ++L  + ++    +++ R +P+  IS +++N AI  +GYKGRLTGHG+R T+ST L+E G
Sbjct  286  KQLEPI-SKHHPLVFIGRNDPRKPISKESINQAIELLGYKGRLTGHGFRHTMSTILHEQG  344

Query  361  FVEEWIEAQLSHADSNQIRAAYNHAEYVEPRRRMMQYWADLLDAL  405
            F   WIE QL+H D N IR +YNHA Y++ RR MMQ  AD +D+L
Sbjct  345  FNSAWIEMQLAHVDKNSIRDTYNHALYLDGRREMMQWYADYIDSL  389

587) Smlt0056 in NC_010943


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  217 bits (808),  Expect = 8e-58, Method: Compositional matrix adjust.
 Identities = 169/397 (43%), Positives = 252/397 (64%), Gaps = 9/397 (2%)

Query  1    MPLTDTAIRKTKPSASVQKlrdggglylllrpdgAKWWRWDYRRPVTGKRNTLSLGTYPD  60
            M+LTD  ++ +KP     KL DGGG+YLL+  +G+K WR  YR   +GK + LS+G YPD
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYR--FAGKEKMLSIGVYPD  58

Query  61   VSLAVARERHVAARKLLAGGIDPGEHRKAQKKAVVESSASTFEAVAAEYFSMRAGKLSAE  120
            V+LA ARE++  ARKLLA+G DPGE +K +K A   S  +TFEA+A E   ++A++ S  
Sbjct  59   VTLADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLR  118

Query  121  SISHERRIVERDLNPYLGRSPVGAIPARELLDALRRIESRGAVKTAHRARGIAGRVFRYA  180
               +     E+D+ PY+G+ P++ I +  LL+ALR++E RGA+   ++ R   G VFRYA
Sbjct  119  YRDEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYA  178

Query  181  IATGRADRNPADDLRGALASSEVQHFPSITDPSLITGLLRATHGYQGSPVVQAALRLAPL  240
            I TGRAD NPA DL +ALA++   HFP +T   L   +L    GY GS + ++A ++  L
Sbjct  179  IVTGRADYNPAPDLASALATPKKVHFPFLTANEL-PHFLNDLAGYTGSIITKTATQIIML  237

Query  241  VFVRPGELRHALWDDIDLDAGQWRFTAT--KTGQPHIVPLAVQAVAILRELHPLTCRAKY  298
              VR  ELR A W+DID+++  W + A   K  +PHIVPL+ Q + ++++L+P++ +   
Sbjct  238  TGVRTQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHPL  297

Query  299  VFPCMIGKGRPMSENAVNGALRRLGYESGSMTGHGFRAMARTVLDEVLGFRPDYIEHQLA  358
            VF    +  +P+S +++N A+  LGY  G +TGHGFR    T+L+E  GF +  IE QLA
Sbjct  298  VFIGRNDPRKPISKESINQAIELLGY-KGRLTGHGFRHTMSTILHEQ-GFNSAWIEMQLA  355

Query  359  HAVRDPNGRAYNRTAHLVERAKMMQAW-ADYLDGLRT  394
            H  +++   +YN++  L  R  MMQ W ADY+D+L +
Sbjct  356  HVDKNSIRDTYNHALYLDGRREMMQ-WYADYIDSLSS  391

588) LFML04_0012 in NC_018649


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  214 bits (797),  Expect = 4e-57, Method: Compositional matrix adjust.
 Identities = 144/340 (43%), Positives = 224/340 (66%), Gaps = 6/340 (1%)

Query  1    MGVYPETSLrearerrdeakkkieSGIDPSHARKAKKESDSGA--DTFETIAREWFEKFS  58
            +GVYP+ +L +ARE+R EA+K + +G DP++A+K  K ++  +  +TFE+IAREW +  +
Sbjct  53   IGVYPDVTLADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKA  112

Query  59   PTWSPSHGDRIIRRLERDIFPWLGKRSIKDIKAPEFLAVLRRIESRGAVETAHRASQNCG  118
              WS    D II  +E+DIFP +GKR+I +IK+  +L  LR++E RGA+E  ++  Q CG
Sbjct  113  DRWSLRYRDEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCG  172

Query  119  QVFRYAAAMGRTEGDPSGDLRGAIPPTTTKHHASITDPKEIGGLLRAIDSYEGGLVVRCA  178
            +VFRYA   GR++ +P+ DL +A+ +T  K H ++  ++E+  +L  + +Y G+++ + A
Sbjct  173  EVFRYAIVTGRADYNPAPDLASAL-ATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTA  231

Query  179  LKLAPLVFVRPGELRRAEWSEIDFEKMEWRIPAEKMKMREQHIVPLSRQALGILRELQPL  238
             ++  L  VR  ELR A W +IDFE   W IPAE MKM+  HIVPLS Q + ++++L+P+
Sbjct  232  TQIIMLTGVRTQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPI  291

Query  239  TGEGKYLFPSPRSWDRPMSENAVLAALRRMGYSGDQMTGHGFRSMASTILIEQGWNRDAI  298
            + +   +F +     +P+S +++  A+  +GY G ++TGHGFR   STIL EQG N   I
Sbjct  292  SKHHPLVFIGRNDPRKPISKESINQAIELLGYKG-RLTGHGFRHTMSTILHEQGFNSAWI  350

Query  299  ERQLAHAERDEIRAAYNYAQHLPERRKMMQAW-ANYLDEL  337
            E QLAH +++ IR +YN A  L  RR MMQ W A+Y+D L
Sbjct  351  EMQLAHVDKNSIRDTYNHALYLDGRREMMQ-WYADYIDSL  389

589) Pnap_2643 in NC_008781


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  214 bits (798),  Expect = 5e-57, Method: Compositional matrix adjust.
 Identities = 163/405 (41%), Positives = 246/405 (61%), Gaps = 16/405 (3%)

Query  1    MPLTDIFTKNTKHSGAPAGDKHTDGGGMYLLV-TKAGKYWRMNYRFAGKRKTLALGVYPA  59
            M+LTDI  K +K  + P   K +DGGGMYLL+ T+++KYWRM+YRFAGK K L++GVYP 
Sbjct  1    MALTDIKVKTAKPKDKPY--KLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPD  58

Query  60   VSLAEARQGRDKARKLLAQDIDPSAAKQEDRQatataaantfeavaREFHALKAGGWSEG  119
            V+LA+AR+ R  ARKLLA + DP+ AK+E++ A   +  NTFEA+ARE H LKA+ WS  
Sbjct  59   VTLADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLR  118

Query  120  HATKWLRMNELYLFPHIGTLPLSTIKAPTLLAALRKVEKKGILSTAQDLQAMAGQVFRYG  179
                 +   E  +FP IG  P++ IK+  LL ALRK+EK+G L   + ++   G+VFRY+
Sbjct  119  YRDEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYA  178

Query  180  VQTGRCESNPGVDLKGALQPHIAKHFAAILDPVEAGAMLRAIDAYTGQPETLAALKLSAL  239
            + TGR + NP+ DL +AL      HF ++L + E    L  + +YTG   T +A ++  L
Sbjct  179  IVTGRADYNPAPDLASALATPKKVHF-PFLTANELPHFLNDLAGYTGSIITKTATQIIML  237

Query  240  FFQRPGNIRAMEWAWIDLDGQMLTIPAKSMKSSKHEKANGKPHTVPLARQALDVLKSIKQ  299
               R  ++R   W  ID++ ++  IPA  MK         +PH VPL+ Q + ++K +  
Sbjct  238  TGVRTQELRFARWEDIDFETKLWEIPAEVMKMK-------RPHIVPLSEQVIMLFKQLEP  290

Query  300  LTGHGRYVFPGARTGERPMSDGTINAALRRLDYGNNEHVAHGFRAMARTMMAERLSGIPQ  359
            ++ H   VF G     +P+S  +IN A+  L+Y +    +HGFR    T++ E+  G+  
Sbjct  291  ISKHHPLVFIGRNDPRKPISKESINQAIELLGY-KGRLTGHGFRHTMSTILHEQ--GFNS  347

Query  360  DMVEAQLGHGKKGPLGSAYDRSEYLPQRQQMMQTW-ADYLDKLRT  403
              +E QL+H  K ++  +Y+++ YL  R++MMQ W ADY+D L +
Sbjct  348  AWIEMQLAHVDKNSIRDTYNHALYLDGRREMMQ-WYADYIDSLSS  391

590) XCV2615 in NC_007508


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  212 bits (790),  Expect = 2e-56, Method: Compositional matrix adjust.
 Identities = 167/400 (42%), Positives = 246/400 (62%), Gaps = 16/400 (4%)

Query  1    MPLTDTAIRKAKPTATPQKLRDGNGLYLLLRPDGARWWRYDYRRPVTGKRNTLSFGTYPE  60
            M+LTD  ++ AKP   P KL DG G+YLL+  +G++ WR  YR   +GK + LS+G YP+
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYR--FAGKEKMLSIGVYPD  58

Query  61   VSLSDarerlaearrllaaKIDPGEQRKavkaageaaaaNSFEVIAREWFAKQQKDWSTQ  120
            V+L+DARE+ +EAR+LLAA  DPGE +K  K A + +  N+FE IAREW   +   WS +
Sbjct  59   VTLADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLR  118

Query  121  YADKIIRRLQSDIFPWIGSSPIAAITAPELLKHLERIEQRGAIETAHRALQTCGAVFRYA  180
            Y D II  ++ DIFP IG  PIA I +  LL  L ++E+RGA+E  ++  Q CG VFRYA
Sbjct  119  YRDEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYA  178

Query  181  VRTGRAEADPTGALKGALTPWRSMPFaaattseeattLLRKIDISTSRPVVRSALRLAPL  240
            + TGRA+ +P+  L +AL+  + + F +  T++E   +L  +   T+  + ++A ++  L
Sbjct  179  IVTGRADYNPAPDLASALATPKKVHF-PFLTANELPHFLNDLAGYTGSIITKTATQIIML  237

Query  241  LFSRPGELVRMRWTELDLDAGQWRYF--VTKTKRTHIAALSTQAVEILRDLHPLTGRGEF  298
               R  EL   RW ++D+++  W     V K KR HI +LS Q + ++++L+P++ +  +
Sbjct  238  TGVRTQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHPL  297

Query  299  VFPGGRDPRKHMSGNAILVAARRCGIEKEESTIHGFRHMASTLLNEMG---DWNPDAIEA  355
            VF G  DPRK +S ++I  A    G  K   T HGFRH  ST+L+E G    W    IE 
Sbjct  298  VFIGRNDPRKPISKESINQAIELLGY-KGRLTGHGFRHTMSTILHEQGFNSAW----IEM  352

Query  356  ALTH-KMPGVRGIYNQAQYLDERRKMMQAW-GDYLDELKS  393
             L+H    ++R+ YN+A YLD RR MMQ W +DY+D L S
Sbjct  353  QLAHVDKNSIRDTYNHALYLDGRREMMQ-WYADYIDSLSS  391

591) XALc_1632 in NC_013722


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  209 bits (777),  Expect = 2e-55, Method: Compositional matrix adjust.
 Identities = 159/378 (43%), Positives = 237/378 (63%), Gaps = 28/378 (7%)

Query  1    MRPDGARWWRWDYRRPNTGKRNTLSLGTYPDTGladardkrdaarkllaaGVDPGEQRKR  60
            +  +G++ WR  YR   +GK + LS+G YPD  LADAR+KR  ARKLLAAG DPGE +K 
Sbjct  30   INTNGSKYWRMKYR--FAGKEKMLSIGVYPDVTLADAREKRSEARKLLAAGGDPGEAKKE  87

Query  61   AKEQAAMVAPAGETFETVARAWMARQTVARVTAEKNRW-------LLETF---LFPEIGS  110
             K    M  +  +TFE++AR W   ++        +RW       +++TF   +FP IG 
Sbjct  88   EKIAQQM--SLKNTFEAIAREWHQLKA--------DRWSLRYRDEIIDTFEKDIFPYIGK  137

Query  111  RPIGEITPRELLDALRKIEATGKLETAGRAKIKAGQVFRYAMLEGKAEIDPTASLRGALK  170
            RPI+EI P  LL+ALRK+E  G LE   + + + G+VFRYA++ G+A+ +P++ L +AL 
Sbjct  138  RPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIVTGRADYNPAPDLASALA  197

Query  171  TVKARHHAAVTDPVKIGQLLRAIEGFIGQPVTHAALKLAPLVFVRPGELRAAEWGEIDLD  230
            T K  H + +T    + ++L  + G+ G  +T +A ++  L  VR  ELR A W +ID++
Sbjct  198  TPKKVHFPFLTAN-ELPHFLNDLAGYTGSIITKTATQIIMLTGVRTQELRFARWEDIDFE  256

Query  231  AAMWRIRPERMKMKAAHLVPLSSQAVAILRDLHALTGGGPHVFPGLR-PNRPMSENTINS  289
            + +W I +E MKMK +H+VPLS Q + ++++L++++   P VF G   P +P+S ++IN 
Sbjct  257  TKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHPLVFIGRNDPRKPISKESINQ  316

Query  290  ALRALGYSGDEMTGHGFRSMAATRLNEMGWNADAIERQLAHAETNKVREAYTHAAQYLPE  349
            A+  LGY G  +TGHGFR   +T L+E G N+  IE QLAH + N +R++Y HA  YL  
Sbjct  317  AIELLGYKG-RLTGHGFRHTMSTILHEQGFNSAWIEMQLAHVDKNSIRDTYNHAL-YLDG  374

Query  350  RVRMMQAW-ADYLDSLRT  366
            R  MMQ W ADY+DSL +
Sbjct  375  RREMMQ-WYADYIDSLSS  391

592) Tola_2265 in NC_012691


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  206 bits (765),  Expect = 2e-54, Method: Compositional matrix adjust.
 Identities = 157/391 (41%), Positives = 242/391 (62%), Gaps = 5/391 (1%)

Query  6    LTDSKLRTAKPEDKEYNLGDGDGLYLRIKPNGNKMWLFNYYRPDNKKRANLSFGPYPDVT  65
            LTD K++TAKP DK Y+L+DG+G+YL I+ NG+K W  +Y R   K +  LS+G YPDVT
Sbjct  3    LTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKY-RFAGKEKM-LSIGVYPDVT  60

Query  66   laaarerrrqarallSENIDPQTYLQEQIAITKARDEASSNTFVKIARQWLDMKRHDVSE  125
            LA ARE+R +AR LL+   DP    + +     A++ +  NTF  IAR+W ++K +  S 
Sbjct  61   LADAREKRSEARKLLAAGGDPG---EAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSL  117

Query  126  DYAEDTWRSLEMYILPELANKTIDLIRAPMVISLLRPLEADGKLETVRRLCQRVNEIMSY  185
             Y ++   ++E  I+P ++++ I  I++  ++  LR +E  G LE +R++ QR  E+  Y
Sbjct  118  RYRDEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRY  177

Query  186  AVNHGLLDANPCADIRKVFKKPSKKHMPTIRPDELPLLMADIINGRLDATTRCQIEWSLH  245
            A+  G  D NP +D+   +  P K H P + ++ELP ++ D+        T+   +  + 
Sbjct  178  AIVTGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIML  237

Query  246  TLVRPNESAGTRWDEIDLESKIWTIPAERMKMDRTHRIPLTKQAIALLERMKPISGHRPH  305
            T VR +E   +RW++ID+E+K+W IPAE MKM R H +PL+ Q I L+ ++ PIS H+P 
Sbjct  238  TGVRTQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHPL  297

Query  306  VFPSYRNPLGHIHEQTANAALKRLGYGGRLVAHGLRSLGSTTLNEQEFNPDVIEAALSHA  365
            VF +  +P   I  ++ N A+  LGY GRL +HG+R   ST L+EQ FN+  IE  L+H 
Sbjct  298  VFIGRNDPRKPISKESINQAIELLGYKGRLTGHGFRHTMSTILHEQGFNSAWIEMQLAHV  357

Query  366  DDNEIRRAYNRSDYFEQRIKMMQWWSDHIEA  396
            D N IR +YN++ Y++ R  MMQW +D I++
Sbjct  358  DKNSIRDTYNHALYLDGRREMMQWYADYIDS  388

593) MICA_2176 in NC_016026


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  201 bits (746),  Expect = 4e-53, Method: Compositional matrix adjust.
 Identities = 134/301 (45%), Positives = 205/301 (69%), Gaps = 7/301 (2%)

Query  16   QNTFKAVALEWHERQLDRWSENHALNVMRRFDIDIFPYIGSRPIADIDAPELLEVLRRIE  75
            +NTF A+A EWH+ + DRWS     +++  F+ DIFPYIG RPIA+I +  LLE LR++E
Sbjct  97   KNTFEAIAREWHQLKADRWSLRYRDEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKME  156

Query  76   KRGSLDVAARVKQICGQVFRYGIATGRCKRDHAADLRGALKTAKTQHYPALDIKEMPEFL  135
            KRG+L+   +V+Q CG+VFRY+I TGR   + A+DL +AL T+K  H+P L  +E+P+FL
Sbjct  157  KRGALEKMRKVRQRCGEVFRYAIVTGRADYNPAPDLASALATPKKVHFPFLTANELPHFL  216

Query  136  KALERNEPRLFSRTRKGIRLLMLTFVRTSELIKATWDEFDLEEGRWVIPAERMKVGGAHT  195
            + L      ++++T  + +++MLT VRT EL  A W+++D+E   W IPAE MK+  +H 
Sbjct  217  NDLAGYTGSIITKT--ATQIIMLTGVRTQELRFARWEDIDFETKLWEIPAEVMKMKRPHI  274

Query  196  VPLSRQAikilkelkeeTEHLNVKWVFPSQVRPKEHMSNNTLLFAIGRLGYKGRMTGHGF  255
            VPLS Q I ++K+L   + H  +  VF ++  P+  +S++++  AI  LGYKGR+TGHGF
Sbjct  275  VPLSEQVIMLFKQLEPISKHHPL--VFIGRNDPRKPISKESINQAIELLGYKGRLTGHGF  332

Query  256  RALAMSTIKENLGYRHEIVDRQLAHAHKSKIDRAYDRSKFLPDRIVMMQEW-ADYLDSVE  314
            R  +MSTI ++ G+    ++ QLAH +K+ I  +Y+++ +L +R  MMQ W ADY+DS+ 
Sbjct  333  RH-TMSTILHEQGFNSAWIEMQLAHVDKNSIRDTYNHALYLDGRREMMQ-WYADYIDSLS  390

Query  315  S  315
            S
Sbjct  391  S  391

594) xccb100_1868 in NC_010688


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  199 bits (741),  Expect = 2e-52, Method: Compositional matrix adjust.
 Identities = 164/396 (42%), Positives = 246/396 (63%), Gaps = 8/396 (2%)

Query  1    MPLTDTAIRRAKPAATPQKLRDGNGLYLLLRPDGARWWRYDYRRPVTGKRNTLSFGTYPE  60
            M+LTD  ++ AKP   P KL DG G+YLL+  +G++ WR  YR   +GK + LS+G YP+
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYR--FAGKEKMLSIGVYPD  58

Query  61   VSladarerlaearrlvaaKIDPGEQRKavkaageaaaaNSFEVVAREWFAKQQKEWSPQ  120
            V+LADARE+ +EAR+L+AA  DPGE +K  K A + +  N+FE +AREW   +   WS +
Sbjct  59   VTLADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLR  118

Query  121  YAEKIIRRLQSDIFPWIGSSPIAAITAPELLKHLERIEQRGAIETAHRALQTCGAVFRYA  180
            Y + II  ++ DIFP IG  PIA I +  LL  L ++E+RGA+E  ++  Q CG VFRYA
Sbjct  119  YRDEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYA  178

Query  181  VRTGRAEADPTGALKGALTPWRSMPFaaattseeattVLRKIDISTSRPVVRSalrlapl  240
            + TGRA+ +P+  L +AL+  + + F +  T++E    L  +   T+  + ++A ++  L
Sbjct  179  IVTGRADYNPAPDLASALATPKKVHF-PFLTANELPHFLNDLAGYTGSIITKTATQIIML  237

Query  241  lfarpGELVRMRWTELDLDAGQWRYF--VTKTKRTHIAALSTQAIEILRDLHPLTGRGEF  298
               R  EL   RW ++D+++  W     V K KR HI +LS Q I ++++L+P++ +  +
Sbjct  238  TGVRTQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPISKHHPL  297

Query  299  VFPGGRDPRKHMSGNAILVAARRCGIEKDESTIHGFRHMASTLLNEMGHWNPDAIESALT  358
            VF G  DPRK +S ++I  A    G  K+  T HGFRH  ST+L+E G  N+  IE  L+
Sbjct  298  VFIGRNDPRKPISKESINQAIELLGY-KGRLTGHGFRHTMSTILHEQG-FNSAWIEMQLA  355

Query  359  H-KMPGVRGIYNQAQYLDERRKMMQSWADNLDTLKA  393
            H    ++R+ YN+A YLD RR MMQ  AD +D+L +
Sbjct  356  HVDKNSIRDTYNHALYLDGRREMMQWYADYIDSLSS  391

595) MCA0676 in NC_002977


> AF141323|1|G1|5532446|AAD44730.1|Shigella_flexneri_5a_str._M90T|+|285..1469|int|-|Int
Length=394

 Score =  184 bits (684),  Expect = 3e-48, Method: Compositional matrix adjust.
 Identities = 123/293 (42%), Positives = 193/293 (66%), Gaps = 3/293 (1%)

Query  1    MALTDTAVRSARPAEKAFKLADEKGLFLHVMPGGARYWRLKYRIGGKEKLMALGVYPEVS  60
            MALTD  V++A+P +K++KLAD  G++L +   G++YWR+KYR++GKEK++++GVYP+V+
Sbjct  1    MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT  60

Query  61   LKEararrdkaraLLGQGIDPNDHKKAAKRTEAGE--DSFERIALEWHARHMANKSESHA  118
            L +AR +R  AR LL+ G DP + KK  K ++     ++FE IA EWH       S    
Sbjct  61   LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR  120

Query  119  TKTLERLRKDVFPWIGNRPVREITAPELLSVLRRIESRGAIELCHVTKRICGQVMRYAIA  178
               ++ + KD+FP IG+RP+ EI +  LL  LR++E RGA+E  +  ++ CG+V RYAI 
Sbjct  121  DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV  180

Query  179  TGRAERDPAADLKGALQPVKARHFAAITDPKAIGELLRAIEEYTGHFATQCALKLSPLVM  238
            TGRA+ +PA+DL +AL   K  HF+ +T ++ + ++L  +  YTG + T+ A ++  L  
Sbjct  181  TGRADYNPAPDLASALATPKKVHFPFLT-ANELPHFLNDLAGYTGSIITKTATQIIMLTG  239

Query  239  LRPGEVRQaewaeidieaaewRIPAAKMKMRDEHIVPLSRQAVEILESIRPLT  291
            +R  E+R A W +ID+E+  W IPA  MKM+  HIVPLS Q + ++  + P++
Sbjct  240  VRTQELRFARWEDIDFETKLWEIPAEVMKMKRPHIVPLSEQVIMLFKQLEPIS  292