>AB190956|1|G1|52693826|BAD51766.1|Helicobacter_pylori_OK210|+|1..3567|cagA|-|cytotoxin
Length = 3567
Score = 2598 bits (6703), Expect = 0.0
Identities = 1426/1567 (91%)
Strand = Plus / Plus
Query: 1034 tacaagttcaaccagttaccgattcacaataacgctctgtcttctatgctaatggggagt 1093
|||||||||||||| ||| ||||||||||||||||||||||||| || |||||||||||
Sbjct: 886 tacaagttcaaccaattattgattcacaataacgctctgtcttctgtgttaatggggagt 945
Query: 1094 catagcagcatagaacctgaaaaagtttcattgttgtatggggataatggtggtcctgaa 1153
|||| || |||||||||||||||||||||| |||||||||| |||||||||||||||
Sbjct: 946 cataatggcgtagaacctgaaaaagtttcattattgtatgggggcaatggtggtcctgaa 1005
Query: 1154 gctaggcatgattggaacgccaccgttggttataaaaaccaacaaggcaacaatgtggcc 1213
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1006 gctaggcatgattggaacgccaccgttggttataaaaaccaacaaggcaacaatgtggct 1065
Query: 1214 acactcatcaatgcgcatcttaaaaacggcagcgggttagtcatagcgggtaatggaaat 1273
|||||||| |||| |||| | ||||||||||| |||||||||||||| ||| || ||
Sbjct: 1066 acactcattaatgtgcatatgaaaaacggcagtgggttagtcatagcaggtggtgagaaa 1125
Query: 1274 gggattaacaaccctagcttctatctctacaaaacagaccaactcacaggcttggaacaa 1333
||| ||||||||||||| || |||||||||||| |||||| |||||||||||| |||||
Sbjct: 1126 ggggttaacaaccctagtttttatctctacaaagaagaccagctcacaggcttgaaacaa 1185
Query: 1334 gcgttgagtcaagaagagatccaaaacaaagtggatttcatggaacttcttgcacaaaac 1393
|| ||||||||| |||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct: 1186 gcattgagtcaaaaagagatccaaaacaaagtggatttcatggaatttcttgcaaaaaac 1245
Query: 1394 aacgctagattagataacttgagcgaggaagagaaagaaaagttccaaactgagattgga 1453
||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||| |
Sbjct: 1246 aacgctagattagataacttgagcgagaaagagaaagaaaaattccaaactgagattgaa 1305
Query: 1454 aatttccaaaaagaccctaaggcttatttagactccctagggaatgatcgcattgctttt 1513
||||||||||| |||||||||||||||||||| ||||||||||||||| |||||||||
Sbjct: 1306 gatttccaaaaaaaccctaaggcttatttagacgccctagggaatgatcatattgctttt 1365
Query: 1514 gtttctaaaaaagaccaaaagcatttagctttggttactgagtttggtaatggggaattg 1573
||||||||||||||| |||| ||||||||||| |||||||||||||||||||||||||||
Sbjct: 1366 gtttctaaaaaagacaaaaaacatttagctttagttactgagtttggtaatggggaattg 1425
Query: 1574 agctatactctcaaagattatgggaaaaaacaagatagagctttagatagggagacaaaa 1633
||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 1426 agctacactctcaaagattatgggaaaaaacaagataaagctttagatagggagacaaaa 1485
Query: 1634 accactcttcaaggtaacctaaagcatgatggcgtgatgtttgtcaattattccaatttc 1693
||||||||||||||||||||||| |||||||||||||||||||| |||||||| ||||||
Sbjct: 1486 accactcttcaaggtaacctaaaacatgatggcgtgatgtttgttaattattctaatttc 1545
Query: 1694 aaatacaccaacgcctccaagagtcctgatgagggtataggcgctacgaatggcgtttcc 1753
|||||||||||||||||||||||||||||| ||||| | || ||||||||||||||||||
Sbjct: 1546 aaatacaccaacgcctccaagagtcctgataagggtgtgggtgctacgaatggcgtttcc 1605
Query: 1754 catttggaagcaaattttagcaaggtggctgtctttaatttgcctgatttaaatggtctc 1813
||||||||||||||| |||| ||||| |||||||||||||||||| |||||||| ||||
Sbjct: 1606 catttggaagcaaatcttagtaaggtagctgtctttaatttgcctaatttaaataatctc 1665
Query: 1814 gctatctctagttttgcaaggcggaatttagaggataaactgatcgctaaaggattgccc 1873
|||||| |||||| | |||||| | ||||| ||||||||| |||||||||||| ||
Sbjct: 1666 gctatcactagttatataaggcgagacttagaagataaactgtgtgctaaaggattgtcc 1725
Query: 1874 ccaaaagacgctaataagatcatcaaagactttttgaacagcaacaaggaattgcttgaa 1933
||| |||| | ||||||| |||||||||||||||||||||||||||| |||||| |||||
Sbjct: 1726 ccacaagaagttaataagctcatcaaagactttttgaacagcaacaaagaattggttgaa 1785
Query: 1934 aaagctttagacttcaataaagctgtagctgaagctaaaaatacaggcaattatgacgga 1993
||||||||| ||||||||||| ||||||||||||||||||| |||||||||||||||| |
Sbjct: 1786 aaagctttaaacttcaataaaactgtagctgaagctaaaaacacaggcaattatgacgaa 1845
Query: 1994 gtgaaaaaagctcaaaaagatcttgaaaaatctataaggaaacgagagcgtttagagcaa 2053
|||||||||||||| |||||||||||||||||| ||||||||||||||| ||||||| ||
Sbjct: 1846 gtgaaaaaagctcagaaagatcttgaaaaatctctaaggaaacgagagcatttagagaaa 1905
Query: 2054 gaaataacgaaaaaatttgagaacaagagcggcaacaaaaataaaatggaagcgaaagtt 2113
||| ||||||||||||| |||| || |||| |||||||||| ||||||||| |||| |
Sbjct: 1906 gaagtaacgaaaaaattggagagaaaaagcgataacaaaaatagaatggaagcaaaagct 1965
Query: 2114 caagctaacagccaaaaagatgggatttttaagcttatcaatgaagaggctcataaggaa 2173
||||||||||||||||||||| ||||||| ||||||||||||||||| |||||||
Sbjct: 1966 caagctaacagccaaaaagataagatttttgcaattatcaatgaagaggctggtaaggaa 2025
Query: 2174 gcaagaatcgccgcttacgctcagaatcttaaaggcatcaggagggaattgtttgataaa 2233
|||||| | ||||||| || ||||||||||||||||||||| | |||||||| ||||||
Sbjct: 2026 gcaagagtagccgcttgcgttcagaatcttaaaggcatcagaatggaattgtctgataag 2085
Query: 2234 gttaaaaatctcaacaagaatttgaaagactttgataaatcttttgatgcgctcaaaagt 2293
|| |||| ||||||||||||||||||||||||||||||||||||||| |||||| |
Sbjct: 2086 cttgaaaacatcaacaagaatttgaaagactttgataaatcttttgatgaattcaaaaat 2145
Query: 2294 ggcaaaaataaggatttcagcaaggcagaagaaacgctaaaagcccttgaaag-ctcggt 2352
|||||||||||||||||||||||| ||||||||||||||||||||||| |||| ||||||
Sbjct: 2146 ggcaaaaataaggatttcagcaagacagaagaaacgctaaaagccctt-aaagactcggt 2204
Query: 2353 gaaagatttgggtatcaatccagaatggatttcaaaagttgaaaaccttaatgcagcttt 2412
||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 2205 gaaagatttaggtatcaatccagaatggatttcaaaagttgaaaaccttaatacagcttt 2264
Query: 2413 gaatgaattcaaaaatggcaaaaataaggatttcagcaaggtaacacaagcaaaaagcga 2472
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 2265 gaatgaattcaaaaatggcaaaaataaggatttcagcaaggtaacgcaagcaaaaagcga 2324
Query: 2473 ccttgaaaattccattaaggatgtgctcatcaatcaagagataacggataaagttgacaa 2532
|||||||||||||||||| |||||| ||||||||||| ||||||||||||||||||||||
Sbjct: 2325 ccttgaaaattccattaaagatgtgatcatcaatcaaaagataacggataaagttgacaa 2384
Query: 2533 tctcaatcaggctgtattaagggctaaagcgataggcgattttagtggggtagagcaaga 2592
||||||||| ||||||| || |||||||| | || ||||| ||| ||||||||||||
Sbjct: 2385 tctcaatcaagctgtatcaatagctaaagcaacgggtgatttcagtagggtagagcaagc 2444
Query: 2593 gctagcc 2599
|||||||
Sbjct: 2445 gctagcc 2451
Score = 937 bits (2418), Expect = e-273
Identities = 516/573 (90%)
Strand = Plus / Plus
Query: 1 atggctaacgaaaccatcaatcaaacaaaaaaaccagatcaaacaccaagccaaacggct 60
||| |||||||||| || ||||||||| || |||||||||||||| ||||||||| |||
Sbjct: 1 atgactaacgaaactattgatcaaacaagaacaccagatcaaacacaaagccaaacagct 60
Query: 61 tttaatccacaacaatttatcaataatcttcaagtggcttttattaaacttgatagtgct 120
||| |||| |||| |||||||||||||||||||||||||||||||||| |||||| || |
Sbjct: 61 tttgatccgcaacgatttatcaataatcttcaagtggcttttattaaagttgataatgtt 120
Query: 121 gtcgcttcatttgatcccgatcaaaaaccaatcgttgataagaacgatagggataacagg 180
||||||||||||||||| ||||||||||||||||||||||||| ||||||||||| |||
Sbjct: 121 gtcgcttcatttgatcctaatcaaaaaccaatcgttgataagaatgatagggataatagg 180
Query: 181 caagcttttaatgtaatctcgcaattaagggaagaatacgccaataaagcgatcaaaaat 240
||||||||| | ||||||||| ||||||| |||| ||| ||||||||||||||||||
Sbjct: 181 caagcttttgagaaaatctcgcagctaagggaggaattcgctaataaagcgatcaaaaat 240
Query: 241 cccaccaaaaagaatcagtatttttcagactttatcgataaaagcaatgatttgatcaac 300
|| ||||||||||||||||||||||| ||||||| ||| |||| |||||| ||||||
Sbjct: 241 cctgccaaaaagaatcagtatttttcaagctttatcagtaagagcagtgatttaatcaac 300
Query: 301 aaaaacgatctcattgatacagattcttccacaaagagctttgaaaaatttggggctcag 360
||| || |||||||||||||| |||||||| |||||||||| | ||||||||| |||||
Sbjct: 301 aaagacactctcattgatacaggttcttccataaagagctttcagaaatttgggactcag 360
Query: 361 cgttaccaaatttttatgaattgggtgtcccatcaaaaagatccgtctaaaatcaacacc 420
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 361 cgttaccaaatttttatgaattgggtgtcccatcaaaaagatccatctaaaatcaacacc 420
Query: 421 caaaaaatccgagattttatggaaaatatcatacaaccccctatctctgatgataaagaa 480
|||| ||||||| |||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 421 caaagaatccgaagttttattgaaaatatcatacaaccccctatctctgatgataaagaa 480
Query: 481 aaagcggagtttttgaggtctgccaaacaatcttttgcaggaattatcatagggaaccaa 540
|||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||
Sbjct: 481 aaagcggagtttttgaggtctgccaaacaagcttttgcaggaattatcataggaaaccag 540
Query: 541 acccgatcggatgaaaaattcatgggcgttttt 573
| || ||| ||| |||||||||||||||| |||
Sbjct: 541 atccaatcagatcaaaaattcatgggcgtgttt 573
Score = 619 bits (1597), Expect = e-177
Identities = 348/391 (89%)
Strand = Plus / Plus
Query: 3016 agcgaaattggacaattacgctactaacagccacacacgcattaatagcaatgtcaaaaa 3075
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3177 agcgaaattggacaattacgctactaacagccacacacgcattaatagcaatgtcaaaaa 3236
Query: 3076 tggaacaatcaatgaaaaagcgatcggcatgctaacgcaaaaaaaccctgagtggctcaa 3135
|||||||||||||||||||| || ||||| ||| || |||||||||||||||||| ||
Sbjct: 3237 tggaacaatcaatgaaaaagagactagcatgttaatgcgaaaaaaccctgagtggcttaa 3296
Query: 3136 gcttgtgaatgataagatagttgcgcataatgtgggaagcgctcctttgtcaggttatga 3195
||| ||||||||||||||||||||||||||||||||||| ||||||||||||| |||||
Sbjct: 3297 gctcgtgaatgataagatagttgcgcataatgtgggaagtgctcctttgtcagcgtatga 3356
Query: 3196 taaaattggattcaaccaaaagaatatgaaaggttattctgattcgttcaggttttccac 3255
||||||||||||||| |||||||||||||||| ||||||||||||||||| |||||||||
Sbjct: 3357 taaaattggattcaatcaaaagaatatgaaagattattctgattcgttcaagttttccac 3416
Query: 3256 caagttgagcaatgccgtaaaaaacattaagtctgactttaagcaacttttaaccgattg 3315
|| ||||||||||||||||||| |||||||||||| |||| |||| |||||||| ||
Sbjct: 3417 caggttgagcaatgccgtaaaagacattaagtctggctttgtgcaatttttaaccaatat 3476
Query: 3316 catttctgcaggaacttacagcccgaagaaagc------ggaacatggagttaaaaatat 3369
||||| ||| |||||||| || |||||| |||||||||||| |||||||
Sbjct: 3477 attttctatgggatcttacagcttgatgaaagcaagtgtggaacatggagtcaaaaatac 3536
Query: 3370 taatacaaaaagtggtttccagaaatcttaa 3400
|||||||||| |||||||||| |||||||||
Sbjct: 3537 taatacaaaaggtggtttccaaaaatcttaa 3567
Score = 375 bits (967), Expect = e-104
Identities = 211/241 (88%)
Strand = Plus / Plus
Query: 2766 atctcggcggatcttcccctttgaaaaggtatgctaaagttgatgatctcagtaaggtag 2825
||||||||||| ||| ||||||||||| | ||| |||||||| |||||||||||||||||
Sbjct: 2936 atctcggcggacctttccctttgaaaaagcatgataaagttggtgatctcagtaaggtag 2995
Query: 2826 ggctttcaagggagcaagaattgaatgagaaaattggcaatctcaatcaggcagtgtcag 2885
||||||||||||||||||||||||| | || |||| ||||||||||||||| || ||||
Sbjct: 2996 ggctttcaagggagcaagaattgaaacaaaagattgacaatctcaatcaggcggtatcag 3055
Query: 2886 aagctaaagcaggttcttttggcaacctagaacaaatgatggatggactcaaagattcta 2945
||||||||||| || ||||||||||||||| |||||||| || |||||||||||||
Sbjct: 3056 aagctaaagcatgtcattttggcaacctagatcaaatgatagacaagctcaaagattcta 3115
Query: 2946 caaaaaagaatgttgtgaatctatggtttgaaggtgcaagaaaagtgcctattagtttgc 3005
|||||||||||||| ||||||||| ||||| |||||| ||||||||||| |||||||
Sbjct: 3116 caaaaaagaatgttatgaatctatatgttgaaagtgcaaaaaaagtgcctactagtttgt 3175
Query: 3006 c 3006
|
Sbjct: 3176 c 3176
Score = 355 bits (917), Expect = 3e-98
Identities = 203/227 (89%)
Strand = Plus / Plus
Query: 810 agcctgt---tggggattggcttgatatttttttatcgtttgtatttaacaaagaacaat 866
||||| | ||||||||||||||||||||||||||| ||||| ||||||||| ||||||
Sbjct: 629 agcctattggtggggattggcttgatatttttttatcatttgtgtttaacaaaaaacaat 688
Query: 867 cttctgatctcaaagaaacgctcaatcaagagccaaggcctcatgttgaacaaaatgtag 926
|||| |||||||||||||||||| ||||||| ||| |||||||| ||| | || |||
Sbjct: 689 cttccgatctcaaagaaacgctcgatcaagaaccagttcctcatgtccaaccagatatag 748
Query: 927 cctctacccccacccacatacaaggcttaccgcctgaagctagggatttgcttgatgaaa 986
|| ||||| ||||| ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 749 ccactaccaccaccgacatacaaggcttaccgcctgaatctagggatttgcttgatgaaa 808
Query: 987 ggggtgatttttctaaattcactcttggtgatatggaaatgttggat 1033
||||| ||||||||||||||||||||||||||||||||||||| |||
Sbjct: 809 ggggtaatttttctaaattcactcttggtgatatggaaatgttagat 855
Score = 115 bits (298), Expect = 5e-26
Identities = 66/75 (88%)
Strand = Plus / Plus
Query: 2691 ctttgaaaaggtatgctaaagttgatgatctcagtaaggtagggcaatcagatagccctg 2750
|||||||| || || ||||||||| |||||||||||||||||||| |||| || || ||
Sbjct: 2852 ctttgaaagggcatactaaagttggtgatctcagtaaggtagggctttcagctaaccatg 2911
Query: 2751 aacccatttacgcta 2765
|||||||||||||||
Sbjct: 2912 aacccatttacgcta 2926
Score = 49 bits (125), Expect = 7e-06
Identities = 28/31 (90%)
Strand = Plus / Plus
Query: 779 aaagagaggcaagaagcacaaaacaatggag 809
||||| |||||||||||| |||| |||||||
Sbjct: 586 aaagaaaggcaagaagcagaaaaaaatggag 616
Score = 23 bits (60), Expect = 3e+02
Identities = 12/12 (100%)
Strand = Plus / Plus
Query: 743 gatgaatctttg 754
||||||||||||
Sbjct: 574 gatgaatctttg 585
Score = 15 bits (40), Expect = 7e+04
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 2603 ctcaaaag 2610
||||||||
Sbjct: 2466 ctcaaaag 2473 |