>AB190954|1|G1|52693822|BAD51764.1|Helicobacter_pylori_OK204|+|1..3567|cagA|-|cytotoxin
Length = 3567
Score = 2588 bits (6680), Expect = 0.0
Identities = 1424/1567 (91%)
Strand = Plus / Plus
Query: 1034 tacaagttcaaccagttaccgattcacaataacgctctgtcttctatgctaatggggagt 1093
|||||||||||||| ||| ||||||||||||||||||||||||| || |||||||||||
Sbjct: 868 tacaagttcaaccaattattgattcacaataacgctctgtcttctgtgttaatggggagt 927
Query: 1094 catagcagcatagaacctgaaaaagtttcattgttgtatggggataatggtggtcctgaa 1153
|||| ||||||||||||||||||||||||| |||||||||| |||||||||||||||
Sbjct: 928 cataatggcatagaacctgaaaaagtttcattattgtatgggggcaatggtggtcctgaa 987
Query: 1154 gctaggcatgattggaacgccaccgttggttataaaaaccaacaaggcaacaatgtggcc 1213
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 988 gctaggcatgattggaacgccaccgttggttataaaaaccaacaaggcaacaatgtggct 1047
Query: 1214 acactcatcaatgcgcatcttaaaaacggcagcgggttagtcatagcgggtaatggaaat 1273
|||||||| |||| |||| | ||||||||||| |||||||||||||| ||| || ||
Sbjct: 1048 acactcattaatgtgcatatgaaaaacggcagtgggttagtcatagcaggtggtgagaaa 1107
Query: 1274 gggattaacaaccctagcttctatctctacaaaacagaccaactcacaggcttggaacaa 1333
||| ||||||||||||| || |||||||||||| |||||| |||||||||||| |||||
Sbjct: 1108 ggggttaacaaccctagtttttatctctacaaagaagaccagctcacaggcttgaaacaa 1167
Query: 1334 gcgttgagtcaagaagagatccaaaacaaagtggatttcatggaacttcttgcacaaaac 1393
|| ||||||||| |||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct: 1168 gcattgagtcaaaaagagatccaaaacaaagtggatttcatggaatttcttgcaaaaaac 1227
Query: 1394 aacgctagattagataacttgagcgaggaagagaaagaaaagttccaaactgagattgga 1453
|||||||||||||||||||||||| || ||||||||||||| ||||||| |||||||| |
Sbjct: 1228 aacgctagattagataacttgagcaagaaagagaaagaaaaattccaaaatgagattgaa 1287
Query: 1454 aatttccaaaaagaccctaaggcttatttagactccctagggaatgatcgcattgctttt 1513
|||| ||||||||| |||||||||||||||| ||||||||||||||| ||||||||||
Sbjct: 1288 gattttcaaaaagactctaaggcttatttagatgccctagggaatgatcacattgctttt 1347
Query: 1514 gtttctaaaaaagaccaaaagcatttagctttggttactgagtttggtaatggggaattg 1573
||||||||||||||| |||| ||||||||||| ||| |||||||| ||||||||||||||
Sbjct: 1348 gtttctaaaaaagacaaaaaacatttagctttagttgctgagttttgtaatggggaattg 1407
Query: 1574 agctatactctcaaagattatgggaaaaaacaagatagagctttagatagggagacaaaa 1633
||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 1408 agctacactctcaaagattatgggaaaaaacaagataaagctttagatagggagacaaaa 1467
Query: 1634 accactcttcaaggtaacctaaagcatgatggcgtgatgtttgtcaattattccaatttc 1693
||||||||||||||||||||||| |||||||||||||||||||| |||||||| ||||||
Sbjct: 1468 accactcttcaaggtaacctaaaacatgatggcgtgatgtttgttaattattctaatttc 1527
Query: 1694 aaatacaccaacgcctccaagagtcctgatgagggtataggcgctacgaatggcgtttcc 1753
|||||||||||||||||||||||||||||| ||||| | || ||||||||||||||||||
Sbjct: 1528 aaatacaccaacgcctccaagagtcctgataagggtgtgggtgctacgaatggcgtttcc 1587
Query: 1754 catttggaagcaaattttagcaaggtggctgtctttaatttgcctgatttaaatggtctc 1813
||||||||||||||| |||||||||| |||||||||||||||||| |||||||| ||||
Sbjct: 1588 catttggaagcaaatcttagcaaggtagctgtctttaatttgcctaatttaaataatctc 1647
Query: 1814 gctatctctagttttgcaaggcggaatttagaggataaactgatcgctaaaggattgccc 1873
|||||| ||||| | |||||| | ||||| |||||||||| |||||||||||| ||
Sbjct: 1648 gctatcaatagttatataaggcgagacttagaagataaactgagggctaaaggattgtcc 1707
Query: 1874 ccaaaagacgctaataagatcatcaaagactttttgaacagcaacaaggaattgcttgaa 1933
||| |||| ||||||||| |||||||||||||||||||||||||||| |||||| |||||
Sbjct: 1708 ccacaagaagctaataagctcatcaaagactttttgaacagcaacaaagaattggttgaa 1767
Query: 1934 aaagctttagacttcaataaagctgtagctgaagctaaaaatacaggcaattatgacgga 1993
||||||||| ||||||||||| ||||||||||||||||||| |||||||||||||| | |
Sbjct: 1768 aaagctttaaacttcaataaaactgtagctgaagctaaaaacacaggcaattatgatgaa 1827
Query: 1994 gtgaaaaaagctcaaaaagatcttgaaaaatctataaggaaacgagagcgtttagagcaa 2053
|||||||||||||| ||||||||||| |||||||||||||||||||||| ||||||| ||
Sbjct: 1828 gtgaaaaaagctcagaaagatcttgagaaatctataaggaaacgagagcatttagagaaa 1887
Query: 2054 gaaataacgaaaaaatttgagaacaagagcggcaacaaaaataaaatggaagcgaaagtt 2113
||| ||| ||||||||| ||||||| | || ||||||||||| ||||||||| |||| |
Sbjct: 1888 gaagtaatgaaaaaattggagaacagaaacgacaacaaaaatagaatggaagcaaaagct 1947
Query: 2114 caagctaacagccaaaaagatgggatttttaagcttatcaatgaagaggctcataaggaa 2173
||||||||||||||||||||| ||||||| ||||||||||||||||| |||||||
Sbjct: 1948 caagctaacagccaaaaagataagatttttgcaattatcaatgaagaggctggtaaggaa 2007
Query: 2174 gcaagaatcgccgcttacgctcagaatcttaaaggcatcaggagggaattgtttgataaa 2233
|||||| ||||||| || ||||||||||||||||||||| | |||||||| ||||||
Sbjct: 2008 gcaagagcggccgcttgcgttcagaatcttaaaggcatcagaatggaattgtctgataag 2067
Query: 2234 gttaaaaatctcaacaagaatttgaaagactttgataaatcttttgatgcgctcaaaagt 2293
|| |||| ||||||||||||||||||||||||||||||||||||||| |||||| |
Sbjct: 2068 cttgaaaacatcaacaagaatttgaaagactttgataaatcttttgatgaattcaaaaat 2127
Query: 2294 ggcaaaaataaggatttcagcaaggcagaagaaacgctaaaagcccttgaaag-ctcggt 2352
||||||||||||||||| |||||||||||||||||||||||||||||| |||| ||||||
Sbjct: 2128 ggcaaaaataaggattttagcaaggcagaagaaacgctaaaagccctt-aaagactcggt 2186
Query: 2353 gaaagatttgggtatcaatccagaatggatttcaaaagttgaaaaccttaatgcagcttt 2412
||||||||| || ||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 2187 gaaagatttaggcatcaatccagaatggatttcaaaagttgaaaaccttaatacagcttt 2246
Query: 2413 gaatgaattcaaaaatggcaaaaataaggatttcagcaaggtaacacaagcaaaaagcga 2472
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2247 gaatgaattcaaaaatggcaaaaataaggatttcagcaaggtaacacaagcaaaaagcga 2306
Query: 2473 ccttgaaaattccattaaggatgtgctcatcaatcaagagataacggataaagttgacaa 2532
|||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||
Sbjct: 2307 ccttgaaaattccattaaagatgtgatcatcaatcaagagataacggataaagttgacaa 2366
Query: 2533 tctcaatcaggctgtattaagggctaaagcgataggcgattttagtggggtagagcaaga 2592
||||||||| ||||||| || ||||| | | ||||||||| ||||||||||||||||
Sbjct: 2367 tctcaatcaagctgtatcaatagctaaggaaacaggcgatttcagtggggtagagcaagc 2426
Query: 2593 gctagcc 2599
|||||||
Sbjct: 2427 gctagcc 2433
Score = 903 bits (2330), Expect = e-263
Identities = 492/537 (92%)
Strand = Plus / Plus
Query: 37 gatcaaacaccaagccaaacggcttttaatccacaacaatttatcaataatcttcaagtg 96
|||||||||||||||||||| |||||||| || || |||||||||||||||||||||||
Sbjct: 19 gatcaaacaccaagccaaacagcttttaacccgcagcaatttatcaataatcttcaagta 78
Query: 97 gcttttattaaacttgatagtgctgtcgcttcatttgatcccgatcaaaaaccaatcgtt 156
|||||| ||||| ||||| ||||||||||||||||||| ||||||||||||||||||
Sbjct: 79 gcttttcttaaaggtgataactctgtcgcttcatttgatcctgatcaaaaaccaatcgtt 138
Query: 157 gataagaacgatagggataacaggcaagcttttaatgtaatctcgcaattaagggaagaa 216
|||||||| |||||||||||||||||||||||| | |||||||||| |||||||||||
Sbjct: 139 gataagaatgatagggataacaggcaagcttttgagaaaatctcgcaactaagggaagaa 198
Query: 217 tacgccaataaagcgatcaaaaatcccaccaaaaagaatcagtatttttcagactttatc 276
||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct: 199 tacgccaataaagcgatcaaaaatcccgccaaaaagaatcagtatttttcaaactttatc 258
Query: 277 gataaaagcaatgatttgatcaacaaaaacgatctcattgatacagattcttccacaaag 336
||| |||| |||||| ||||||||| || |||||||||||||| |||||||| ||||
Sbjct: 259 agtaagagcagtgatttaatcaacaaagacagtctcattgatacaggttcttccataaag 318
Query: 337 agctttgaaaaatttggggctcagcgttaccaaatttttatgaattgggtgtcccatcaa 396
|||||| | ||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 agctttcagaaatttgggactcagcgttaccaaatttttatgaattgggtgtcccatcaa 378
Query: 397 aaagatccgtctaaaatcaacacccaaaaaatccgagattttatggaaaatatcatacaa 456
|||||||| ||||||||||||||||||| ||||||| ||||||||||||||||||||||
Sbjct: 379 aaagatccatctaaaatcaacacccaaagaatccgaagttttatggaaaatatcatacaa 438
Query: 457 ccccctatctctgatgataaagaaaaagcggagtttttgaggtctgccaaacaatctttt 516
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 439 ccccctatctctgatgataaagaaaaagcggagtttttgaggtctgccaaacaagctttt 498
Query: 517 gcaggaattatcatagggaaccaaacccgatcggatgaaaaattcatgggcgttttt 573
||||||||||||||||| ||||| | || ||| ||| |||||||||||||||| |||
Sbjct: 499 gcaggaattatcataggaaaccagatccaatcagatcaaaaattcatgggcgtgttt 555
Score = 539 bits (1391), Expect = e-153
Identities = 300/323 (93%)
Strand = Plus / Plus
Query: 3016 agcgaaattggacaattacgctactaacagccacacacgcattaatagcaatgtcaaaaa 3075
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 3177 agcgaaattggacaattacgctactaacagccacacacgcattaatagcaatgtccaaag 3236
Query: 3076 tggaacaatcaatgaaaaagcgatcggcatgctaacgcaaaaaaaccctgagtggctcaa 3135
|||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 3237 tggagcaatcaatgaaaaagcgactggcatgctaacgcaaaaaaaccctgagtggctcaa 3296
Query: 3136 gcttgtgaatgataagatagttgcgcataatgtgggaagcgctcctttgtcaggttatga 3195
||| |||||||||||||||||||| |||||||||||||| ||||||||||||| |||||
Sbjct: 3297 gctcgtgaatgataagatagttgcacataatgtgggaagtgctcctttgtcagcgtatga 3356
Query: 3196 taaaattggattcaaccaaaagaatatgaaaggttattctgattcgttcaggttttccac 3255
|||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct: 3357 taaaattggattcaaccaaaagaatatgaaagattattctgattcgttcaagttttccac 3416
Query: 3256 caagttgagcaatgccgtaaaaaacattaagtctgactttaagcaacttttaaccgattg 3315
|| ||||||||||||||||||| |||||||||||| |||| |||| |||||||| | ||
Sbjct: 3417 caggttgagcaatgccgtaaaagacattaagtctggctttgtgcaatttttaacc-aatg 3475
Query: 3316 cattt-ctgcaggaacttacagc 3337
||||| || ||||| ||||||||
Sbjct: 3476 cattttctacaggatcttacagc 3498
Score = 351 bits (906), Expect = 6e-97
Identities = 202/227 (89%)
Strand = Plus / Plus
Query: 810 agcct---gttggggattggcttgatatttttttatcgtttgtatttaacaaagaacaat 866
||||| | ||||||||||||||||||||||||||| ||||| ||||||||| ||||||
Sbjct: 611 agcctactggtggggattggcttgatatttttttatcatttgtgtttaacaaaaaacaat 670
Query: 867 cttctgatctcaaagaaacgctcaatcaagagccaaggcctcatgttgaacaaaatgtag 926
|||| |||||||||||||||||| ||||||| ||| ||||||| ||| | || |||
Sbjct: 671 cttccgatctcaaagaaacgctcgatcaagaaccagtttctcatgtccaaccagatatag 730
Query: 927 cctctacccccacccacatacaaggcttaccgcctgaagctagggatttgcttgatgaaa 986
|| ||||| ||||| ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 731 ccactaccaccaccgacatacaaggcttaccgcctgaatctagggatttgcttgatgaaa 790
Query: 987 ggggtgatttttctaaattcactcttggtgatatggaaatgttggat 1033
||||| ||||||||||||||||||||||||||||||||||||| |||
Sbjct: 791 ggggtaatttttctaaattcactcttggtgatatggaaatgttagat 837
Score = 323 bits (833), Expect = 2e-88
Identities = 188/224 (84%)
Strand = Plus / Plus
Query: 2782 ccctttgaaaaggtatgctaaagttgatgatctcagtaaggtagggctttcaagggagca 2841
|||||||| || || ||| |||| ||||||||||||| ||||||||||||||||||||
Sbjct: 2952 ccctttgaggagatacgctccagttaatgatctcagtaaagtagggctttcaagggagca 3011
Query: 2842 agaattgaatgagaaaattggcaatctcaatcaggcagtgtcagaagctaaagcaggttc 2901
||||||||| |||| |||| || ||||||||| || || ||| |||||||||| ||
Sbjct: 3012 agaattgaaacagaagattgacagtctcaatcaagcggtatcatcagctaaagcatgtca 3071
Query: 2902 ttttggcaacctagaacaaatgatggatggactcaaagattctacaaaaaagaatgttgt 2961
||||| ||||||||| |||| ||| || ||||||||||||||||||||||||||| |
Sbjct: 3072 ttttgacaacctagagcaaacgatagacaagctcaaagattctacaaaaaagaatgttat 3131
Query: 2962 gaatctatggtttgaaggtgcaagaaaagtgcctattagtttgc 3005
|||||||| ||||| |||||| ||||||||||| ||||||||
Sbjct: 3132 gaatctatatattgaaagtgcaaaaaaagtgcctactagtttgc 3175
Score = 94 bits (241), Expect = 2e-19
Identities = 50/54 (93%)
Strand = Plus / Plus
Query: 3347 gcggaacatggagttaaaaatattaatacaaaaagtggtttccagaaatcttaa 3400
|||||||||||||| ||||||| |||||||||| |||||||||| |||||||||
Sbjct: 3514 gcggaacatggagtcaaaaatactaatacaaaaggtggtttccaaaaatcttaa 3567
Score = 72 bits (185), Expect = 8e-13
Identities = 40/43 (93%)
Strand = Plus / Plus
Query: 767 gatgaatctttgaaagagaggcaagaagcacaaaacaatggag 809
||||||||||||||||| |||||||||||| |||| |||||||
Sbjct: 556 gatgaatctttgaaagaaaggcaagaagcagaaaaaaatggag 598
Score = 45 bits (116), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 2743 tagccctgaacccatttacgcta 2765
|||||||||||||||||||||||
Sbjct: 2895 tagccctgaacccatttacgcta 2917
Score = 23 bits (59), Expect = 4e+02
Identities = 13/14 (93%)
Strand = Plus / Plus
Query: 1 atggctaacgaaac 14
||| ||||||||||
Sbjct: 1 atgtctaacgaaac 14
Score = 15 bits (40), Expect = 7e+04
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 2603 ctcaaaag 2610
||||||||
Sbjct: 2448 ctcaaaag 2455 |