>AB190952|1|G1|52693818|BAD51762.1|Helicobacter_pylori_OK194|+|1..3534|cagA|-|cytotoxin
Length = 3534
Score = 2518 bits (6498), Expect = 0.0
Identities = 1391/1518 (92%)
Strand = Plus / Plus
Query: 484 tacaagttcaaccagttaccgattcacaataacgctctgtcttctatgctaatggggagt 543
||||||||||| || ||| ||| |||||||||||||| |||||| ||||||||||||||
Sbjct: 874 tacaagttcaatcaattattgatccacaataacgctctatcttctgtgctaatggggagt 933
Query: 544 catagcagcatagaacctgaaaaagtttcattgttgtatggggataatggtggtcctgaa 603
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 934 catagcagcatagaacctgaaaaagtttcattattgtatggggataatggtggtcctgaa 993
Query: 604 gctaggcatgattggaacgccaccgttggttataaaaaccaacaaggcaacaatgtggcc 663
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 994 gctaggcatgattggaacgccaccgttggttataaaaaccaacaaggcagtaatgtggcc 1053
Query: 664 acactcatcaatgcgcatcttaaaaacggcagcgggttagtcatagcgggtaatggaaat 723
|||||||| |||||||||||||| |||||||| |||||||||||||||||||||| ||||
Sbjct: 1054 acactcattaatgcgcatcttaataacggcagtgggttagtcatagcgggtaatgaaaat 1113
Query: 724 gggattaacaaccctagcttctatctctacaaaacagaccaactcacaggcttggaacaa 783
|||||||| |||||||||||||||||||||||| ||| ||||||||||| ||| |||||
Sbjct: 1114 gggattaaaaaccctagcttctatctctacaaagaagatcaactcacaggtttgaaacaa 1173
Query: 784 gcgttgagtcaagaagagatccaaaacaaagtggatttcatggaacttcttgcacaaaac 843
||||||||||||||||||||||||||||||||||||||||||||| |||||| | |||||
Sbjct: 1174 gcgttgagtcaagaagagatccaaaacaaagtggatttcatggaatttcttgtaaaaaac 1233
Query: 844 aacgctagattagataacttgagcgaggaagagaaagaaaagttccaaactgagattgga 903
||||||| |||||| |||||||||||| ||||||||||||| |||||||||||||||| |
Sbjct: 1234 aacgctaaattagacaacttgagcgagaaagagaaagaaaaattccaaactgagattgaa 1293
Query: 904 aatttccaaaaagaccctaaggcttatttagactccctagggaatgatcgcattgctttt 963
|||||||||||||||| ||||||||| || ||| | ||||||||||||| ||||||||||
Sbjct: 1294 aatttccaaaaagaccgtaaggcttacttggacgctctagggaatgatcacattgctttt 1353
Query: 964 gtttctaaaaaagacc-aaaagcatttagctttggttactgagtttggtaatggggaatt 1022
|||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 1354 gtttctaaaaaagacccaaaa-catttagctttggttactgagtttggtaatggggaatt 1412
Query: 1023 gagctatactctcaaagattatgggaaaaaacaagatagagctttagatagggagacaaa 1082
|||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||
Sbjct: 1413 gagctatactctcaaagattatgggaaaaaacaagataaagctttagatggggagacaaa 1472
Query: 1083 aaccactcttcaaggtaacctaaagcatgatggcgtgatgtttgtcaattattccaattt 1142
||||||||||||||||| |||||| |||||||||||||||||||||||||||| |||||
Sbjct: 1473 aaccactcttcaaggtagcctaaaatatgatggcgtgatgtttgtcaattattctaattt 1532
Query: 1143 caaatacaccaacgcctccaagagtcctgatgagggtataggcgctacgaatggcgtttc 1202
|||||||||||||||||||||||||||| || ||||| ||||||||||||||||||||||
Sbjct: 1533 caaatacaccaacgcctccaagagtcctaataagggtttaggcgctacgaatggcgtttc 1592
Query: 1203 ccatttggaagcaaattttagcaaggtggctgtctttaatttgcctgatttaaatggtct 1262
|||||||||||| ||||||||||| || |||||||||||||||||| |||||||| |||
Sbjct: 1593 ccatttggaagcgaattttagcaaagtagctgtctttaatttgcctaatttaaataatct 1652
Query: 1263 cgctatctctagttttgcaaggcggaatttagaggataaactgatcgctaaaggattgcc 1322
||||||| ||| || | |||||| ||||||| ||||||||| |||||||||||| |
Sbjct: 1653 cgctatcactaattatataaggcgagatttagaagataaactgtgggctaaaggattgtc 1712
Query: 1323 cccaaaagacgctaataagatcatcaaagactttttgaacagcaacaaggaattgcttga 1382
| || |||| ||||||||| |||||||||||||||| ||||||||||| ||||||||||
Sbjct: 1713 ctcacaagaagctaataagctcatcaaagactttttaaacagcaacaaagaattgcttgg 1772
Query: 1383 aaaagctttagacttcaataaagctgtagctgaagctaaaaatacaggcaattatgacgg 1442
||||| || | ||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct: 1773 aaaagtttcaaacttcaataaagctgtagctgaagctaaaaacacaggcaattatgatga 1832
Query: 1443 agtgaaaaaagctcaaaaagatcttgaaaaatctataaggaaacgagagcgtttagagca 1502
||||||||||||||| |||||||||||||||||| |||||||||||| || ||||||| |
Sbjct: 1833 agtgaaaaaagctcagaaagatcttgaaaaatctctaaggaaacgagggcatttagagaa 1892
Query: 1503 agaaataacgaaaaaatttgagaacaagagcggcaacaaaaataaaatggaagcgaaagt 1562
|||| || |||||||||| |||| || | || ||||||||||| ||||||||| ||||
Sbjct: 1893 agaagtagcgaaaaaattggagagcagaaacgacaacaaaaatagaatggaagcaaaagc 1952
Query: 1563 tcaagctaacagccaaaaagatgggatttttaagcttatcaatgaagaggctcataagga 1622
|||||||||||||||||||||| ||||||| ||||||||| |||||||| ||||||
Sbjct: 1953 tcaagctaacagccaaaaagataagatttttgcacttatcaatcaagaggctagtaagga 2012
Query: 1623 agcaagaatcgccgcttacgctcagaatcttaaaggcatcaggagggaattgtttgataa 1682
||||||| | ||||||| || | || |||||||||||||||||| ||||||| ||||||
Sbjct: 2013 agcaagagtagccgctttcgattcgagtcttaaaggcatcaggagcgaattgtctgataa 2072
Query: 1683 agttaaaaatctcaacaagaatttgaaagactttgataaatcttttgatgcgctcaaaag 1742
| || ||||| |||||||||||||||||||||||| ||||||||||||| |||||||
Sbjct: 2073 acttgaaaatatcaacaagaatttgaaagactttggcaaatcttttgatgaactcaaaaa 2132
Query: 1743 tggcaaaaataaggatttcagcaaggcagaagaaacgctaaaagcccttgaaag-ctcgg 1801
|||||||||||| |||||||||||||||||||||||||||||||||||| |||| |||||
Sbjct: 2133 tggcaaaaataatgatttcagcaaggcagaagaaacgctaaaagccctt-aaagactcgg 2191
Query: 1802 tgaaagatttgggtatcaatccagaatggatttcaaaagttgaaaaccttaatgcagctt 1861
|||||||||| || |||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 2192 tgaaagatttaggcatcaatccagaatggatttcaaaaattgaaaaccttaatgcagctt 2251
Query: 1862 tgaatgaattcaaaaatggcaaaaataaggatttcagcaaggtaacacaagcaaaaagcg 1921
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2252 tgaatgatttcaaaaatggcaaaaataaggatttcagcaaggtaacacaagcaaaaagcg 2311
Query: 1922 accttgaaaattccattaaggatgtgctcatcaatcaagagataacggataaagttgaca 1981
|||||||||||||||||||||||||| ||||||||||| |||||||||||| ||||||||
Sbjct: 2312 accttgaaaattccattaaggatgtgatcatcaatcaaaagataacggatagagttgaca 2371
Query: 1982 atctcaatcaggctgtat 1999
||||||||||||||||||
Sbjct: 2372 atctcaatcaggctgtat 2389
Score = 550 bits (1418), Expect = e-156
Identities = 304/326 (93%)
Strand = Plus / Plus
Query: 2463 gcaagcgaaattggacaattacgctactaacagccacacacgcattaatagcaatgtcaa 2522
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 3141 gcaagcgaaattggacaattacgctactaacagccacacacgcattaatagcaatgtcca 3200
Query: 2523 aaatggaacaatcaatgaaaaagcgatcggcatgctaacgcaaaaaaaccctgagtggct 2582
| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 3201 agatggaacaatcaatgaaaaagcgaccggcatgctaacgcaaaaaaaccctgagtggct 3260
Query: 2583 caagcttgtgaatgataagatagttgcgcataatgtgggaagcgctcctttgtcaggtta 2642
|||||| |||||||||||||||||||| |||||||||||||||||||||||||||| ||
Sbjct: 3261 caagctcgtgaatgataagatagttgcacataatgtgggaagcgctcctttgtcagcgta 3320
Query: 2643 tgataaaattggattcaaccaaaagaatatgaaaggttattctgattcgttcaggttttc 2702
||||||||||||||||||||||||||||||||||| ||||||||| ||||||| ||||||
Sbjct: 3321 tgataaaattggattcaaccaaaagaatatgaaagattattctgactcgttcaagttttc 3380
Query: 2703 caccaagttgagcaatgccgtaaaaaacattaagtctgactttaagcaacttttaaccga 2762
||||||||||| ||| ||||||||| |||||||||||| |||| |||| |||||||| |
Sbjct: 3381 caccaagttgaacaacgccgtaaaagacattaagtctggctttgtgcaatttttaaccaa 3440
Query: 2763 ttgcattt-ctgcaggaacttacagc 2787
||||||| || ||||| ||||||||
Sbjct: 3441 -tgcattttctacaggatcttacagc 3465
Score = 371 bits (956), Expect = e-103
Identities = 202/217 (93%)
Strand = Plus / Plus
Query: 267 tggggattggcttgatatttttttatcgtttgtatttaacaaagaacaatcttctgatct 326
||||||||||||||||||||||||||| ||||| ||||||||| |||||||||| |||||
Sbjct: 627 tggggattggcttgatatttttttatcatttgtgtttaacaaaaaacaatcttccgatct 686
Query: 327 caaagaaacgctcaatcaagagccaaggcctcatgttgaacaaaatgtagcctctacccc 386
||||||||||||||||||||||||||||||| || ||||||||||| ||||| ||||| |
Sbjct: 687 caaagaaacgctcaatcaagagccaaggcctgattttgaacaaaatttagccactaccac 746
Query: 387 cacccacatacaaggcttaccgcctgaagctagggatttgcttgatgaaaggggtgattt 446
|||| |||||||||||||||||||||||||||| ||||||||||||||||||||| ||||
Sbjct: 747 caccgacatacaaggcttaccgcctgaagctagagatttgcttgatgaaaggggtaattt 806
Query: 447 ttctaaattcactcttggtgatatggaaatgttggat 483
|| ||||||||||||||||||| |||| |||||||||
Sbjct: 807 ttttaaattcactcttggtgatgtggagatgttggat 843
Score = 276 bits (712), Expect = 2e-74
Identities = 155/176 (88%)
Strand = Plus / Plus
Query: 2232 ccctttgaaaaggtatgctaaagttgatgatctcagtaaggtagggctttcaagggagca 2291
|||||||| ||| |||| ||||| |||||||||||| ||||||||||||||||| ||
Sbjct: 2919 ccctttgagaagaagtgctggagttggtgatctcagtaaagtagggctttcaagggaaca 2978
Query: 2292 agaattgaatgagaaaattggcaatctcaatcaggcagtgtcagaagctaaagcaggttc 2351
|||||||| | | ||||||| ||||||||||||||||||||||||||||| |||||
Sbjct: 2979 agaattgactcgtagaattggcgatctcaatcaggcagtgtcagaagctaaaacaggtca 3038
Query: 2352 ttttggcaacctagaacaaatgatggatggactcaaagattctacaaaaaagaatg 2407
|||||||||||||||||||| ||| |||| ||||||||||||||||||||||||||
Sbjct: 3039 ttttggcaacctagaacaaaagatagatgaactcaaagattctacaaaaaagaatg 3094
Score = 94 bits (241), Expect = 2e-19
Identities = 50/54 (93%)
Strand = Plus / Plus
Query: 2797 gcggaacatggagttaaaaatattaatacaaaaagtggtttccagaaatcttaa 2850
|||||||||||||| ||||||| |||||||||| |||||||||| |||||||||
Sbjct: 3481 gcggaacatggagtcaaaaatactaatacaaaaggtggtttccaaaaatcttaa 3534
Score = 76 bits (196), Expect = 5e-14
Identities = 44/51 (86%)
Strand = Plus / Plus
Query: 2016 aggcgattttagtggggtagagcaagagctagccaaactcaaaagcttctc 2066
||||||||| ||| ||||||||||| |||||| ||||||||||||| ||
Sbjct: 2406 aggcgatttcagtaaggtagagcaagccctagccgaactcaaaagcttgtc 2456
Score = 75 bits (193), Expect = 9e-14
Identities = 44/49 (90%)
Strand = Plus / Plus
Query: 217 gatgaatctttgaaagagaggcaagaagcacaaaacaatggagagcctg 265
|||||||||||||||| |||||||||||| |||| |||| ||||||||
Sbjct: 574 gatgaatctttgaaagcaaggcaagaagcagaaaaaaatgcagagcctg 622
Score = 62 bits (159), Expect = 8e-10
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 2181 agggcaatcagatagccctgaacccatttacgcta 2215
||||| ||||| |||||||||||||||||||||||
Sbjct: 2850 agggcgatcagctagccctgaacccatttacgcta 2884
Score = 40 bits (103), Expect = 3e-03
Identities = 22/23 (96%)
Strand = Plus / Plus
Query: 1 atgaaaaattcatgggcgttttt 23
||||||||||||||||||| |||
Sbjct: 551 atgaaaaattcatgggcgtgttt 573
Score = 28 bits (73), Expect = 1e+01
Identities = 16/18 (89%)
Strand = Plus / Plus
Query: 2429 gtgcaagaaaagtgccta 2446
|||||| | |||||||||
Sbjct: 3116 gtgcaaaacaagtgccta 3133
Score = 16 bits (41), Expect = 5e+04
Identities = 14/18 (78%)
Strand = Plus / Plus
Query: 2079 attggatc----aaaaaa 2092
|||||||| ||||||
Sbjct: 2457 attggatcttggaaaaaa 2474
Score = 13 bits (35), Expect = 3e+05
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2422 tttgaag 2428
|||||||
Sbjct: 3096 tttgaag 3102 |