>AB190949|1|G1|52693812|BAD51759.1|Helicobacter_pylori_OK181|+|1..3447|cagA|-|cytotoxin
Length = 3447
Score = 2578 bits (6653), Expect = 0.0
Identities = 1421/1567 (91%)
Strand = Plus / Plus
Query: 1034 tacaagttcaaccagttaccgattcacaataacgctctgtcttctatgctaatggggagt 1093
|||||||||||||| ||| ||||||||||||||||||||||||| || |||||||||||
Sbjct: 868 tacaagttcaaccaattattgattcacaataacgctctgtcttctgtgttaatggggagt 927
Query: 1094 catagcagcatagaacctgaaaaagtttcattgttgtatggggataatggtggtcctgaa 1153
|||| ||||||||||||||||||||||||| |||||||||| |||||||| ||||||
Sbjct: 928 cataatggcatagaacctgaaaaagtttcattattgtatgggggcaatggtggccctgaa 987
Query: 1154 gctaggcatgattggaacgccaccgttggttataaaaaccaacaaggcaacaatgtggcc 1213
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 988 gctaggcatgattggaacgccaccgttggttataaaaaccaacaaggcgacaatgtggct 1047
Query: 1214 acactcatcaatgcgcatcttaaaaacggcagcgggttagtcatagcgggtaatggaaat 1273
|||||||| |||| |||| | ||||||||||| |||||||||||||| ||| || ||
Sbjct: 1048 acactcattaatgtgcatatgaaaaacggcagtgggttagtcatagcaggtggtgagaaa 1107
Query: 1274 gggattaacaaccctagcttctatctctacaaaacagaccaactcacaggcttggaacaa 1333
||| ||||||||||||| || |||||||||||| |||||| |||||||||||| |||||
Sbjct: 1108 ggggttaacaaccctagtttttatctctacaaagaagaccagctcacaggcttgaaacaa 1167
Query: 1334 gcgttgagtcaagaagagatccaaaacaaagtggatttcatggaacttcttgcacaaaac 1393
|| ||||| ||||||||||||||||||||||| |||||||||||| ||||||||||||||
Sbjct: 1168 gcattgagccaagaagagatccaaaacaaagtagatttcatggaatttcttgcacaaaac 1227
Query: 1394 aacgctagattagataacttgagcgaggaagagaaagaaaagttccaaactgagattgga 1453
|| |||| |||||||||||||||| || ||||||||||||| ||||||| |||||||| |
Sbjct: 1228 aatgctaaattagataacttgagcaagaaagagaaagaaaaattccaaaatgagattgaa 1287
Query: 1454 aatttccaaaaagaccctaaggcttatttagactccctagggaatgatcgcattgctttt 1513
|||| ||||||||| |||||||||||||||| ||||||||||||||| ||||||||||
Sbjct: 1288 gattttcaaaaagactctaaggcttatttagatgccctagggaatgatcacattgctttt 1347
Query: 1514 gtttctaaaaaagaccaaaagcatttagctttggttactgagtttggtaatggggaattg 1573
||||||||||||||| |||| ||||||||||| ||| |||||||||||||||||||||||
Sbjct: 1348 gtttctaaaaaagacaaaaaacatttagctttagttgctgagtttggtaatggggaattg 1407
Query: 1574 agctatactctcaaagattatgggaaaaaacaagatagagctttagatagggagacaaaa 1633
||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 1408 agctacactctcaaagattatgggaaaaaacaagataaagctttagatagggagacaaaa 1467
Query: 1634 accactcttcaaggtaacctaaagcatgatggcgtgatgtttgtcaattattccaatttc 1693
||||||||||||||||||||||| |||||||||||||||||||| |||||||| ||||||
Sbjct: 1468 accactcttcaaggtaacctaaaacatgatggcgtgatgtttgttaattattctaatttc 1527
Query: 1694 aaatacaccaacgcctccaagagtcctgatgagggtataggcgctacgaatggcgtttcc 1753
|||||||||||||||||||||||||||||| ||||| | || ||||||||||||||||||
Sbjct: 1528 aaatacaccaacgcctccaagagtcctgataagggtgtgggtgctacgaatggcgtttcc 1587
Query: 1754 catttggaagcaaattttagcaaggtggctgtctttaatttgcctgatttaaatggtctc 1813
||||||||||||||| |||||||||| |||||||||||||||||| |||||||| ||||
Sbjct: 1588 catttggaagcaaatcttagcaaggtagctgtctttaatttgcctaatttaaataatctc 1647
Query: 1814 gctatctctagttttgcaaggcggaatttagaggataaactgatcgctaaaggattgccc 1873
|||||| ||||| | |||||| | ||||| ||||||||||| |||||||||||| ||
Sbjct: 1648 gctatcaatagttatataaggcgagacttagaagataaactgatggctaaaggattgtcc 1707
Query: 1874 ccaaaagacgctaataagatcatcaaagactttttgaacagcaacaaggaattgcttgaa 1933
||| |||| ||||||||| |||||||||||||||||||||||||||| |||||| |||||
Sbjct: 1708 ccacaagaagctaataagctcatcaaagactttttgaacagcaacaaagaattggttgaa 1767
Query: 1934 aaagctttagacttcaataaagctgtagctgaagctaaaaatacaggcaattatgacgga 1993
||||||||| ||||||||||| ||||||||||||||||||| |||||||||||||| | |
Sbjct: 1768 aaagctttaaacttcaataaaactgtagctgaagctaaaaacacaggcaattatgatgaa 1827
Query: 1994 gtgaaaaaagctcaaaaagatcttgaaaaatctataaggaaacgagagcgtttagagcaa 2053
|||||||||||||| |||||||||||||||||||||||||||||||||| ||||||| ||
Sbjct: 1828 gtgaaaaaagctcagaaagatcttgaaaaatctataaggaaacgagagcatttagagaaa 1887
Query: 2054 gaaataacgaaaaaatttgagaacaagagcggcaacaaaaataaaatggaagcgaaagtt 2113
||| || |||||||||| |||| || | || ||||||||||| ||||||||| |||| |
Sbjct: 1888 gaagtagcgaaaaaattggagagcagaaacgacaacaaaaatagaatggaagcaaaagct 1947
Query: 2114 caagctaacagccaaaaagatgggatttttaagcttatcaatgaagaggctcataaggaa 2173
||||||||||||||||||||| ||||||| ||||||||| |||||||| |||||||
Sbjct: 1948 caagctaacagccaaaaagataagatttttgcacttatcaatcaagaggctagtaaggaa 2007
Query: 2174 gcaagaatcgccgcttacgctcagaatcttaaaggcatcaggagggaattgtttgataaa 2233
|||||| |||||| || |||||||||||||||||||||||| ||||||| ||||||
Sbjct: 2008 gcaagagcgaccgcttgcgttcagaatcttaaaggcatcaggagcgaattgtctgataag 2067
Query: 2234 gttaaaaatctcaacaagaatttgaaagactttgataaatcttttgatgcgctcaaaagt 2293
|| ||||| ||||||||||||||||||||||||||||||||||||||| ||||||| |
Sbjct: 2068 cttgaaaatatcaacaagaatttgaaagactttgataaatcttttgatgaactcaaaaat 2127
Query: 2294 ggcaaaaataaggatttcagcaaggcagaagaaacgctaaaagcccttgaaag-ctcggt 2352
||||||||||| |||||||||||||||||||||||||||||||||||| |||| ||||||
Sbjct: 2128 ggcaaaaataatgatttcagcaaggcagaagaaacgctaaaagccctt-aaagactcggt 2186
Query: 2353 gaaagatttgggtatcaatccagaatggatttcaaaagttgaaaaccttaatgcagcttt 2412
||||||||| ||||||||||||||||||||||||||| ||||||| ||||||||||||||
Sbjct: 2187 gaaagatttaggtatcaatccagaatggatttcaaaaattgaaaatcttaatgcagcttt 2246
Query: 2413 gaatgaattcaaaaatggcaaaaataaggatttcagcaaggtaacacaagcaaaaagcga 2472
|||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 2247 gaatgatttcaaaaatggtaaaaataaggatttcagcaaggtaacacaagcaaaaagcga 2306
Query: 2473 ccttgaaaattccattaaggatgtgctcatcaatcaagagataacggataaagttgacaa 2532
|||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||
Sbjct: 2307 ccttgaaaattccattaaagatgtgatcatcaatcaagagataacggataaagttgacaa 2366
Query: 2533 tctcaatcaggctgtattaagggctaaagcgataggcgattttagtggggtagagcaaga 2592
||||||||| ||||||| || ||||| | ||||||||| ||||||||||||||||
Sbjct: 2367 tctcaatcaagctgtatcaatagctaatagcacaggcgatttcagtggggtagagcaagc 2426
Query: 2593 gctagcc 2599
|||||||
Sbjct: 2427 gctagcc 2433
Score = 905 bits (2335), Expect = e-263
Identities = 493/540 (91%)
Strand = Plus / Plus
Query: 37 gatcaaacaccaagccaaacggcttttaatccacaacaatttatcaataatcttcaagtg 96
|||||||||||||||||||| |||||||| || || |||||||||||||||||||||||
Sbjct: 19 gatcaaacaccaagccaaacagcttttaacccgcagcaatttatcaataatcttcaagta 78
Query: 97 gcttttattaaacttgatagtgctgtcgcttcatttgatcccgatcaaaaaccaatcgtt 156
|||||| ||||| |||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct: 79 gcttttcttaaagttgataacgctgtcgcttcatttgatcctgatcaaaaaccaatcgtt 138
Query: 157 gataagaacgatagggataacaggcaagcttttaatgtaatctcgcaattaagggaagaa 216
|||||||| |||||||||||||||||||||||| | |||||||||| ||||||| |||
Sbjct: 139 gataagaatgatagggataacaggcaagcttttgagaaaatctcgcaactaagggaggaa 198
Query: 217 tacgccaataaagcgatcaaaaatcccaccaaaaagaatcagtatttttcagactttatc 276
| ||| |||||||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct: 199 ttcgctaataaagcgatcaaaaatcctgccaaaaagaatcagtatttttcaaactttatc 258
Query: 277 gataaaagcaatgatttgatcaacaaaaacgatctcattgatacagattcttccacaaag 336
||| ||||||||||| ||||||||| || |||||||||||||| |||||||| ||||
Sbjct: 259 agtaagagcaatgatttaatcaacaaagacagtctcattgatacaggttcttccataaag 318
Query: 337 agctttgaaaaatttggggctcagcgttaccaaatttttatgaattgggtgtcccatcaa 396
|||||| | ||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 agctttcagaaatttgggactcagcgttaccaaatttttatgaattgggtgtcccatcaa 378
Query: 397 aaagatccgtctaaaatcaacacccaaaaaatccgagattttatggaaaatatcatacaa 456
|||||||| ||||||||||||||||||| ||||||| ||||||||||||||||||||||
Sbjct: 379 aaagatccatctaaaatcaacacccaaagaatccgaagttttatggaaaatatcatacaa 438
Query: 457 ccccctatctctgatgataaagaaaaagcggagtttttgaggtctgccaaacaatctttt 516
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 439 ccccctatctctgatgataaagaaaaagcggagtttttgaggtctgccaaacaagctttt 498
Query: 517 gcaggaattatcatagggaaccaaacccgatcggatgaaaaattcatgggcgtttttgga 576
||||||||||||||||| ||||| | || ||| ||| |||||||||||||||| |||| |
Sbjct: 499 gcaggaattatcataggaaaccagatccaatcagatcaaaaattcatgggcgtgtttgaa 558
Score = 531 bits (1370), Expect = e-151
Identities = 297/323 (92%)
Strand = Plus / Plus
Query: 3016 agcgaaattggacaattacgctactaacagccacacacgcattaatagcaatgtcaaaaa 3075
||||||| | ||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 3057 agcgaaactagacaattacgctactaacagccacacacgcattaatagcaatgtccgaaa 3116
Query: 3076 tggaacaatcaatgaaaaagcgatcggcatgctaacgcaaaaaaaccctgagtggctcaa 3135
|||||||||||||||||||| || || ||||||||||||||||||||||||||||||||
Sbjct: 3117 tggaacaatcaatgaaaaagtgactggtatgctaacgcaaaaaaaccctgagtggctcaa 3176
Query: 3136 gcttgtgaatgataagatagttgcgcataatgtgggaagcgctcctttgtcaggttatga 3195
||| |||||||||||||||||||| |||||||||||||| ||||||||||||| |||||
Sbjct: 3177 gctcgtgaatgataagatagttgcacataatgtgggaagtgctcctttgtcagcgtatga 3236
Query: 3196 taaaattggattcaaccaaaagaatatgaaaggttattctgattcgttcaggttttccac 3255
|||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct: 3237 taaaattggattcaaccaaaagaatatgaaagattattctgattcgttcaagttttccac 3296
Query: 3256 caagttgagcaatgccgtaaaaaacattaagtctgactttaagcaacttttaaccgattg 3315
|| ||||||||||||||||||| |||||||||||| |||| |||| |||||||| | ||
Sbjct: 3297 caggttgagcaatgccgtaaaagacattaagtctggctttgtgcaatttttaacc-aatg 3355
Query: 3316 cattt-ctgcaggaacttacagc 3337
||||| || ||||| ||||||||
Sbjct: 3356 cattttctacaggatcttacagc 3378
Score = 352 bits (910), Expect = 2e-97
Identities = 198/221 (90%)
Strand = Plus / Plus
Query: 813 ctgttggggattggcttgatatttttttatcgtttgtatttaacaaagaacaatcttctg 872
||| ||||||||||||||||||||||||||| ||||| ||||||||| |||||||||| |
Sbjct: 617 ctggtggggattggcttgatatttttttatcatttgtgtttaacaaaaaacaatcttccg 676
Query: 873 atctcaaagaaacgctcaatcaagagccaaggcctcatgttgaacaaaatgtagcctcta 932
|||| |||||||| || |||||||| ||| |||||||| ||| | || ||||| |||
Sbjct: 677 atcttaaagaaacactaaatcaagaaccagttcctcatgtccaaccagatatagccacta 736
Query: 933 cccccacccacatacaaggcttaccgcctgaagctagggatttgcttgatgaaaggggtg 992
|| |||| |||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 737 ccaccactgacatacaaagcttaccgcctgaagctagggatttgcttgatgaaaggggta 796
Query: 993 atttttctaaattcactcttggtgatatggaaatgttggat 1033
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 797 atttttctaaattcactcttggtgatatggaaatgttggat 837
Score = 340 bits (878), Expect = 1e-93
Identities = 192/223 (86%)
Strand = Plus / Plus
Query: 2784 ctttgaaaaggtatgctaaagttgatgatctcagtaaggtagggctttcaagggagcaag 2843
|||||||| || || ||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 2834 ctttgaaagggcatactaaagttggtgatctcagtaaggtagggctttcaagggagcaag 2893
Query: 2844 aattgaatgagaaaattggcaatctcaatcaggcagtgtcagaagctaaagcaggttctt 2903
||||||| |||| |||| |||||||||||| || || ||||||||||||||| || ||
Sbjct: 2894 aattgaaacagaagattgacaatctcaatcaagcggtatcagaagctaaagcatgtcatt 2953
Query: 2904 ttggcaacctagaacaaatgatggatggactcaaagattctacaaaaaagaatgttgtga 2963
||| ||||||||| |||| ||| || ||||||||||||||||||||||||||| |||
Sbjct: 2954 ttgacaacctagagcaaacgatagacaagctcaaagattctacaaaaaagaatgttatga 3013
Query: 2964 atctatggtttgaaggtgcaagaaaagtgcctattagtttgcc 3006
|||||| ||||| |||||| |||||||||| ||||||| |
Sbjct: 3014 atctatatattgaaagtgcaaaaaaagtgcctgctagtttgtc 3056
Score = 94 bits (241), Expect = 2e-19
Identities = 50/54 (93%)
Strand = Plus / Plus
Query: 3347 gcggaacatggagttaaaaatattaatacaaaaagtggtttccagaaatcttaa 3400
|||||||||||||| ||||||| |||||||||| |||||||||| |||||||||
Sbjct: 3394 gcggaacatggagtcaaaaatactaatacaaaaggtggtttccaaaaatcttaa 3447
Score = 72 bits (185), Expect = 7e-13
Identities = 40/43 (93%)
Strand = Plus / Plus
Query: 770 gaatctttgaaagagaggcaagaagcacaaaacaatggagagc 812
|||||||||||||| |||||||||||| |||| ||||||||||
Sbjct: 559 gaatctttgaaagaaaggcaagaagcagaaaaaaatggagagc 601
Score = 25 bits (63), Expect = 1e+02
Identities = 13/14 (93%)
Strand = Plus / Plus
Query: 1 atggctaacgaaac 14
||| ||||||||||
Sbjct: 1 atgactaacgaaac 14
Score = 15 bits (40), Expect = 7e+04
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 2603 ctcaaaag 2610
||||||||
Sbjct: 2448 ctcaaaag 2455 |