>AB190944|1|G1|52693802|BAD51754.1|Helicobacter_pylori_OK158|+|1..3522|cagA|-|cytotoxin
Length = 3522
Score = 2503 bits (6458), Expect = 0.0
Identities = 1386/1518 (91%)
Strand = Plus / Plus
Query: 1034 tacaagttcaaccagttaccgattcacaataacgctctgtcttctatgctaatggggagt 1093
||||||||||| || ||| ||| |||||||||||||| |||||| ||||||||||| ||
Sbjct: 862 tacaagttcaatcaattattgatccacaataacgctctatcttctgtgctaatggggggt 921
Query: 1094 catagcagcatagaacctgaaaaagtttcattgttgtatggggataatggtggtcctgaa 1153
||||| | |||||||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct: 922 catagtaacatagaacctgaaaaagtttcattattgtatggggacaatggtggtcctgaa 981
Query: 1154 gctaggcatgattggaacgccaccgttggttataaaaaccaacaaggcaacaatgtggcc 1213
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 982 gctaggcatgattggaacgccaccgttggttataaaaaccaacaaggtaacaatgtggcc 1041
Query: 1214 acactcatcaatgcgcatcttaaaaacggcagcgggttagtcatagcgggtaatggaaat 1273
|||||||| |||| ||||||||| |||||||| |||||||||||||||||||||| ||||
Sbjct: 1042 acactcattaatgtgcatcttaataacggcagtgggttagtcatagcgggtaatgaaaat 1101
Query: 1274 gggattaacaaccctagcttctatctctacaaaacagaccaactcacaggcttggaacaa 1333
|||||||| |||||||||||||||||||| ||| ||| ||||||||||| ||| |||||
Sbjct: 1102 gggattaaaaaccctagcttctatctctataaagaagatcaactcacaggtttgaaacaa 1161
Query: 1334 gcgttgagtcaagaagagatccaaaacaaagtggatttcatggaacttcttgcacaaaac 1393
||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||
Sbjct: 1162 gcgttgagtcaagaagagatccaaaacaaagtggatttcatggaatttcttgcgcaaaac 1221
Query: 1394 aacgctagattagataacttgagcgaggaagagaaagaaaagttccaaactgagattgga 1453
||||||| |||||| |||||||||||| ||||||||||||| |||||||||||||||| |
Sbjct: 1222 aacgctaaattagacaacttgagcgagaaagagaaagaaaaattccaaactgagattgaa 1281
Query: 1454 aatttccaaaaagaccctaaggcttatttagactccctagggaatgatcgcattgctttt 1513
||||||||||||||| |||||||||||||||| | ||||||||||||| ||||||||||
Sbjct: 1282 tatttccaaaaagaccgtaaggcttatttagacgctctagggaatgatcacattgctttt 1341
Query: 1514 gtttctaaaaaagacc-aaaagcatttagctttggttactgagtttggtaatggggaatt 1572
|||||||||||||||| |||| |||||||||||||||||||||||||||||||||||| |
Sbjct: 1342 gtttctaaaaaagacccaaaa-catttagctttggttactgagtttggtaatggggaagt 1400
Query: 1573 gagctatactctcaaagattatgggaaaaaacaagatagagctttagatagggagacaaa 1632
|||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||
Sbjct: 1401 gagctatactctcaaagattatgggaaaaaacaagataaagctttagatggggagacaaa 1460
Query: 1633 aaccactcttcaaggtaacctaaagcatgatggcgtgatgtttgtcaattattccaattt 1692
||||||||||||||||| |||||| |||||||||||||||||||||||||||| |||||
Sbjct: 1461 aaccactcttcaaggtagcctaaaatatgatggcgtgatgtttgtcaattattctaattt 1520
Query: 1693 caaatacaccaacgcctccaagagtcctgatgagggtataggcgctacgaatggcgtttc 1752
||||||||||||||| ||||||||||||||| |||| | ||||||||||||||||||||
Sbjct: 1521 caaatacaccaacgcttccaagagtcctgataagggcgtgggcgctacgaatggcgtttc 1580
Query: 1753 ccatttggaagcaaattttagcaaggtggctgtctttaatttgcctgatttaaatggtct 1812
||||||||||||||||||||||||||| |||||||||||||||||| |||||||| |||
Sbjct: 1581 ccatttggaagcaaattttagcaaggtagctgtctttaatttgcctaatttaaataatct 1640
Query: 1813 cgctatctctagttttgcaaggcggaatttagaggataaactgatcgctaaaggattgcc 1872
||||||| ||| || | |||||| ||||||| |||||| || |||||||||||| |
Sbjct: 1641 cgctatcactaattatataaggcgagatttagaagataaattgtgggctaaaggattgtc 1700
Query: 1873 cccaaaagacgctaataagatcatcaaagactttttgaacagcaacaaggaattgcttga 1932
| || |||| ||||||||| |||||||||||||||||||||||||||| ||||||||||
Sbjct: 1701 ctcacaagaagctaataagctcatcaaagactttttgaacagcaacaaagaattgcttgg 1760
Query: 1933 aaaagctttagacttcaataaagctgtagctgaagctaaaaatacaggcaattatgacgg 1992
||||| || | ||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 1761 aaaagtttcaaacttcaataaagctgtagctgaagctaaaaacacaggcaattatgacga 1820
Query: 1993 agtgaaaaaagctcaaaaagatcttgaaaaatctataaggaaacgagagcgtttagagca 2052
||||||||| ||||| |||||||||||||||||| ||||||||||||||| ||||||| |
Sbjct: 1821 agtgaaaaaggctcagaaagatcttgaaaaatctctaaggaaacgagagcatttagagaa 1880
Query: 2053 agaaataacgaaaaaatttgagaacaagagcggcaacaaaaataaaatggaagcgaaagt 2112
|||| || |||||||||| |||| || | || || |||||||| ||||||||| ||||
Sbjct: 1881 agaagtagcgaaaaaattggagagcagaaacgacagcaaaaatagaatggaagcaaaagc 1940
Query: 2113 tcaagctaacagccaaaaagatgggatttttaagcttatcaatgaagaggctcataagga 2172
|||||||||||||||||||||| |||||||| | | |||||| |||||||| ||||||
Sbjct: 1941 tcaagctaacagccaaaaagataagatttttatgttgatcaatcaagaggctagtaagga 2000
Query: 2173 agcaagaatcgccgcttacgctcagaatcttaaaggcatcaggagggaattgtttgataa 2232
||||||| || |||| || || |||||||||||||||||||| ||||||| ||||||
Sbjct: 2001 agcaagagcggctgctttcgatccgaatcttaaaggcatcaggaacgaattgtctgataa 2060
Query: 2233 agttaaaaatctcaacaagaatttgaaagactttgataaatcttttgatgcgctcaaaag 2292
| || ||||| |||||||||||||||||||||||| ||||||||||||| |||||||
Sbjct: 2061 acttgaaaatatcaacaagaatttgaaagactttggcaaatcttttgatgaactcaaaaa 2120
Query: 2293 tggcaaaaataaggatttcagcaaggcagaagaaacgctaaaagcccttgaaag-ctcgg 2351
|||||||||||| ||||||| |||||||||||||||||||||||||||| |||| |||||
Sbjct: 2121 tggcaaaaataatgatttcaacaaggcagaagaaacgctaaaagccctt-aaagactcgg 2179
Query: 2352 tgaaagatttgggtatcaatccagaatggatttcaaaagttgaaaaccttaatgcagctt 2411
|||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 2180 tgaaagatttaggtatcaatccagaatggatttcaaaaattgaaaaccttaatgcagctt 2239
Query: 2412 tgaatgaattcaaaaatggcaaaaataaggatttcagcaaggtaacacaagcaaaaagcg 2471
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2240 tgaatgatttcaaaaatggcaaaaataaggatttcagcaaggtaacacaagcaaaaagcg 2299
Query: 2472 accttgaaaattccattaaggatgtgctcatcaatcaagagataacggataaagttgaca 2531
|||||||||||||||||||||||||| |||| |||||| |||||||||||||||||||||
Sbjct: 2300 accttgaaaattccattaaggatgtgatcattaatcaaaagataacggataaagttgaca 2359
Query: 2532 atctcaatcaggctgtat 2549
||||||||||||||||||
Sbjct: 2360 atctcaatcaggctgtat 2377
Score = 861 bits (2223), Expect = e-250
Identities = 467/504 (93%)
Strand = Plus / Plus
Query: 70 caacaatttatcaataatcttcaagtggcttttattaaacttgatagtgctgtcgcttca 129
|||| ||||||||||||||||||||| |||||||| ||| |||||| |||||||||||||
Sbjct: 58 caacgatttatcaataatcttcaagtagcttttatcaaagttgataatgctgtcgcttca 117
Query: 130 tttgatcccgatcaaaaaccaatcgttgataagaacgatagggataacaggcaagctttt 189
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 118 tttgatcccgatcaaaaaccaatcgttgataagaatgatagggataacaggcaagctttt 177
Query: 190 aatgtaatctcgcaattaagggaagaatacgccaataaagcgatcaaaaatcccaccaaa 249
| |||||||||| ||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 178 gagaaaatctcgcaactaagggaagaatacgccaataaagcgatcaaaaatcctaccaaa 237
Query: 250 aagaatcagtatttttcagactttatcgataaaagcaatgatttgatcaacaaaaacgat 309
||||||||||||||||||||||||||| |||| ||||||||||||||||||||| || ||
Sbjct: 238 aagaatcagtatttttcagactttatcaataagagcaatgatttgatcaacaaagacaat 297
Query: 310 ctcattgatacagattcttccacaaagagctttgaaaaatttggggctcagcgttaccaa 369
|| |||| | |||||||||| | |||||||| |||||||||| |||||||||||||
Sbjct: 298 cttattgctgtagattcttccgtagagagctttcggaaatttggggatcagcgttaccaa 357
Query: 370 atttttatgaattgggtgtcccatcaaaaagatccgtctaaaatcaacacccaaaaaatc 429
||||||| || ||||||||||| ||||||||||||||||||||||||||||||| |||||
Sbjct: 358 atttttacgagttgggtgtcccttcaaaaagatccgtctaaaatcaacacccaacaaatc 417
Query: 430 cgagattttatggaaaatatcatacaaccccctatctctgatgataaagaaaaagcggag 489
||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 418 cgaaattttatggaaaatatcatacaaccccctatctttgatgataaagaaaaagcggag 477
Query: 490 tttttgaggtctgccaaacaatcttttgcaggaattatcatagggaaccaaacccgatcg 549
||| ||||||||||||||||||||||||||||||||||||||||||| |||| |||||||
Sbjct: 478 tttctgaggtctgccaaacaatcttttgcaggaattatcatagggaatcaaatccgatcg 537
Query: 550 gatgaaaaattcatgggcgttttt 573
|||||||||||||||||||| |||
Sbjct: 538 gatgaaaaattcatgggcgtgttt 561
Score = 635 bits (1640), Expect = e-182
Identities = 355/394 (90%)
Strand = Plus / Plus
Query: 3013 gcaagcgaaattggacaattacgctactaacagccacacacgcattaatagcaatgtcaa 3072
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 3129 gcaagcgaaattggacaattacgctactaacagccacacacgcattaatagcaatgtcca 3188
Query: 3073 aaatggaacaatcaatgaaaaagcgatcggcatgctaacgcaaaaaaaccctgagtggct 3132
|| |||| |||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 3189 aagtggagcaatcaatgaaaaagcgactggcatgctaacgcaaaaaaaccctgagtggct 3248
Query: 3133 caagcttgtgaatgataagatagttgcgcataatgtgggaagcgctcctttgtcaggtta 3192
|||||| |||||||||||||||||||| ||||||||||||||||||| |||||||| ||
Sbjct: 3249 caagctcgtgaatgataagatagttgcacataatgtgggaagcgctcatttgtcagagta 3308
Query: 3193 tgataaaattggattcaaccaaaagaatatgaaaggttattctgattcgttcaggttttc 3252
||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct: 3309 tgataaaattggattcaaccaaaagaatatgaaagattattctgattcgttcaagttttc 3368
Query: 3253 caccaagttgagcaatgccgtaaaaaacattaagtctgactttaagcaacttttaaccga 3312
||||||||||| ||||||||||||| ||||||||||| |||| |||| |||||||| |
Sbjct: 3369 caccaagttgaacaatgccgtaaaagacattaagtctagctttgtgcaatttttaaccaa 3428
Query: 3313 ttgcatttctgcaggaacttacagcccgaagaaagc------ggaacatggagttaaaaa 3366
| ||||| ||||| |||||||| || |||||| |||||||||||| |||||
Sbjct: 3429 tacattttctacaggatcttacagcttgatgaaagcaaatgtggaacatggagtcaaaaa 3488
Query: 3367 tattaatacaaaaagtggtttccagaaatcttaa 3400
|| |||||||||| |||||||||| |||||||||
Sbjct: 3489 tactaatacaaaaggtggtttccaaaaatcttaa 3522
Score = 372 bits (961), Expect = e-103
Identities = 202/217 (93%)
Strand = Plus / Plus
Query: 817 tggggattggcttgatatttttttatcgtttgtatttaacaaagaacaatcttctgatct 876
||||||||||||||||||||||||||| ||||| ||||||||| |||||||||| |||||
Sbjct: 615 tggggattggcttgatatttttttatcatttgtgtttaacaaaaaacaatcttccgatct 674
Query: 877 caaagaaacgctcaatcaagagccaaggcctcatgttgaacaaaatgtagcctctacccc 936
||||||||||||||||||||||||||||||| || ||||||||||| ||||| ||||| |
Sbjct: 675 caaagaaacgctcaatcaagagccaaggcctgattttgaacaaaatatagccactaccac 734
Query: 937 cacccacatacaaggcttaccgcctgaagctagggatttgcttgatgaaaggggtgattt 996
|||| |||||||||||||||||||||||||||| ||||||||||||||||||||| ||||
Sbjct: 735 caccgacatacaaggcttaccgcctgaagctagagatttgcttgatgaaaggggtaattt 794
Query: 997 ttctaaattcactcttggtgatatggaaatgttggat 1033
|| ||||||||||||||||||| |||| |||||||||
Sbjct: 795 ttttaaattcactcttggtgatgtggagatgttggat 831
Score = 268 bits (692), Expect = 6e-72
Identities = 152/176 (86%)
Strand = Plus / Plus
Query: 2782 ccctttgaaaaggtatgctaaagttgatgatctcagtaaggtagggctttcaagggagca 2841
|||||||| || |||| |||| ||||||||||||| ||||||||||||||||| ||
Sbjct: 2907 ccctttgaggagaagtgctggagttaatgatctcagtaaagtagggctttcaagggaaca 2966
Query: 2842 agaattgaatgagaaaattggcaatctcaatcaggcagtgtcagaagctaaagcaggttc 2901
|||||||| | | ||||||| ||||||||||||| || |||||||||||| |||||
Sbjct: 2967 agaattgactcgtagaattggcgatctcaatcaggcggtatcagaagctaaaacaggtca 3026
Query: 2902 ttttggcaacctagaacaaatgatggatggactcaaagattctacaaaaaagaatg 2957
|||||||||||||||||||| ||| |||| ||||||||||||||||||||||||||
Sbjct: 3027 ttttggcaacctagaacaaaagatagatgaactcaaagattctacaaaaaagaatg 3082
Score = 75 bits (193), Expect = 9e-14
Identities = 44/49 (90%)
Strand = Plus / Plus
Query: 767 gatgaatctttgaaagagaggcaagaagcacaaaacaatggagagcctg 815
|||||||||||||||| |||||||||||| |||| |||| ||||||||
Sbjct: 562 gatgaatctttgaaagcaaggcaagaagcagaaaaaaatgcagagcctg 610
Score = 70 bits (181), Expect = 2e-12
Identities = 40/45 (89%)
Strand = Plus / Plus
Query: 1 atggctaacgaaaccatcaatcaaacaaaaaaaccagatcaaaca 45
|||||||||||||| || ||||||||| || |||||||||||||
Sbjct: 1 atggctaacgaaactattgatcaaacaataacaccagatcaaaca 45
Score = 60 bits (156), Expect = 2e-09
Identities = 32/33 (97%)
Strand = Plus / Plus
Query: 2733 ggcaatcagatagccctgaacccatttacgcta 2765
||||||||| |||||||||||||||||||||||
Sbjct: 2840 ggcaatcagctagccctgaacccatttacgcta 2872
Score = 23 bits (60), Expect = 3e+02
Identities = 12/12 (100%)
Strand = Plus / Plus
Query: 2721 tcagtaaggtag 2732
||||||||||||
Sbjct: 2402 tcagtaaggtag 2413
Score = 18 bits (45), Expect = 2e+04
Identities = 9/9 (100%)
Strand = Plus / Plus
Query: 2988 aagtgccta 2996
|||||||||
Sbjct: 3113 aagtgccta 3121
Score = 13 bits (35), Expect = 3e+05
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2972 tttgaag 2978
|||||||
Sbjct: 3084 tttgaag 3090 |