>AB190943|1|G1|52693800|BAD51753.1|Helicobacter_pylori_OK155|+|1..3555|cagA|-|cytotoxin
Length = 3555
Score = 2579 bits (6655), Expect = 0.0
Identities = 1421/1567 (91%)
Strand = Plus / Plus
Query: 1034 tacaagttcaaccagttaccgattcacaataacgctctgtcttctatgctaatggggagt 1093
|||||||||||||| ||| ||||||||||||||||||||||||| || |||||||||||
Sbjct: 868 tacaagttcaaccaattattgattcacaataacgctctgtcttctgtgttaatggggagt 927
Query: 1094 catagcagcatagaacctgaaaaagtttcattgttgtatggggataatggtggtcctgaa 1153
|||| ||||||||||||||||||||||||| |||||||||| |||||||||||||||
Sbjct: 928 cataatggcatagaacctgaaaaagtttcattattgtatgggggcaatggtggtcctgaa 987
Query: 1154 gctaggcatgattggaacgccaccgttggttataaaaaccaacaaggcaacaatgtggcc 1213
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 988 gctaggcatgattggaacgccaccgttggttataaaaaccaacaaggcaacaatgtggct 1047
Query: 1214 acactcatcaatgcgcatcttaaaaacggcagcgggttagtcatagcgggtaatggaaat 1273
|||||||| |||| |||| | ||||||||||| |||||||||||||| ||| || ||
Sbjct: 1048 acactcattaatgtgcatatgaaaaacggcagtgggttagtcatagcaggtggtgagaaa 1107
Query: 1274 gggattaacaaccctagcttctatctctacaaaacagaccaactcacaggcttggaacaa 1333
||| ||||||||||||| || |||||||||||| |||||| |||||||||||| |||||
Sbjct: 1108 ggggttaacaaccctagtttttatctctacaaagaagaccagctcacaggcttgaaacaa 1167
Query: 1334 gcgttgagtcaagaagagatccaaaacaaagtggatttcatggaacttcttgcacaaaac 1393
|| ||||||||| |||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct: 1168 gcattgagtcaaaaagagatccaaaacaaagtggatttcatggaatttcttgcaaaaaac 1227
Query: 1394 aacgctagattagataacttgagcgaggaagagaaagaaaagttccaaactgagattgga 1453
||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||| |
Sbjct: 1228 aacgctagattagataacttgagcgagaaagagaaagaaaaattccaaactgagattgaa 1287
Query: 1454 aatttccaaaaagaccctaaggcttatttagactccctagggaatgatcgcattgctttt 1513
||||||||||| |||||||||||||||||||| ||||||||||||||| |||||||||
Sbjct: 1288 gatttccaaaaaaaccctaaggcttatttagacgccctagggaatgatcatattgctttt 1347
Query: 1514 gtttctaaaaaagaccaaaagcatttagctttggttactgagtttggtaatggggaattg 1573
||||||||||||||| |||| ||||||||||| |||||||||||||||||||||||||||
Sbjct: 1348 gtttctaaaaaagacaaaaaacatttagctttagttactgagtttggtaatggggaattg 1407
Query: 1574 agctatactctcaaagattatgggaaaaaacaagatagagctttagatagggagacaaaa 1633
||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 1408 agctacactctcaaagattatgggaaaaaacaagataaagctttagatagggagacaaaa 1467
Query: 1634 accactcttcaaggtaacctaaagcatgatggcgtgatgtttgtcaattattccaatttc 1693
||||||||||||||||||||||| |||||||||||||||||||| |||||||| ||||||
Sbjct: 1468 accactcttcaaggtaacctaaaacatgatggcgtgatgtttgttaattattctaatttc 1527
Query: 1694 aaatacaccaacgcctccaagagtcctgatgagggtataggcgctacgaatggcgtttcc 1753
|||||||||||||||||||||||||||||| ||||| | || |||||||||||||||||
Sbjct: 1528 aaatacaccaacgcctccaagagtcctgataagggtgtgggtactacgaatggcgtttcc 1587
Query: 1754 catttggaagcaaattttagcaaggtggctgtctttaatttgcctgatttaaatggtctc 1813
|||||||||||||||||||||||||| |||||||||||||||||| |||||||| ||||
Sbjct: 1588 catttggaagcaaattttagcaaggtagctgtctttaatttgcctaatttaaataatctc 1647
Query: 1814 gctatctctagttttgcaaggcggaatttagaggataaactgatcgctaaaggattgccc 1873
|||||| |||||| | |||||| | ||||| | ||||||| |||||||||||| ||
Sbjct: 1648 gctatcactagttatataaggcgagacttagaaggtaaactgtcggctaaaggattgtcc 1707
Query: 1874 ccaaaagacgctaataagatcatcaaagactttttgaacagcaacaaggaattgcttgaa 1933
| | |||| ||||||||| |||||||||||||||||||||||||||| |||||| |||||
Sbjct: 1708 ctacaagaagctaataagctcatcaaagactttttgaacagcaacaaagaattggttgaa 1767
Query: 1934 aaagctttagacttcaataaagctgtagctgaagctaaaaatacaggcaattatgacgga 1993
||||||||| ||||||||||| ||||||||||||||||||| |||||||||||||||| |
Sbjct: 1768 aaagctttaaacttcaataaaactgtagctgaagctaaaaacacaggcaattatgacgaa 1827
Query: 1994 gtgaaaaaagctcaaaaagatcttgaaaaatctataaggaaacgagagcgtttagagcaa 2053
|||||||||||||| |||||||||||||||||| ||||||||||||||| ||||||| ||
Sbjct: 1828 gtgaaaaaagctcagaaagatcttgaaaaatctctaaggaaacgagagcatttagagaaa 1887
Query: 2054 gaaataacgaaaaaatttgagaacaagagcggcaacaaaaataaaatggaagcgaaagtt 2113
||| ||||||||||| | |||| ||| || ||||||||||||||||||||||| |||| |
Sbjct: 1888 gaagtaacgaaaaaaatggagagcaaaagtggcaacaaaaataaaatggaagcaaaagct 1947
Query: 2114 caagctaacagccaaaaagatgggatttttaagcttatcaatgaagaggctcataaggaa 2173
||||||||||||||||||||| ||||||| |||||||| |||||||| || ||||
Sbjct: 1948 caagctaacagccaaaaagataagatttttgcaattatcaataaagaggctagtagggaa 2007
Query: 2174 gcaagaatcgccgcttacgctcagaatcttaaaggcatcaggagggaattgtttgataaa 2233
|||||| ||| ||||| |||||| ||||||| ||||| ||||||||| ||||||
Sbjct: 2008 gcaagagcggccacttacactcagagtcttaaaattatcagaagggaattgcatgataag 2067
Query: 2234 gttaaaaatctcaacaagaatttgaaagactttgataaatcttttgatgcgctcaaaagt 2293
|| |||| |||||||||||||||| | |||||||||||||||||||| |||||| |
Sbjct: 2068 cttgaaaacatcaacaagaatttgaatgcctttgataaatcttttgatgaattcaaaaat 2127
Query: 2294 ggcaaaaataaggatttcagcaaggcagaagaaacgctaaaagcccttgaaag-ctcggt 2352
|||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||
Sbjct: 2128 ggcaaaaataaggatttcagcaaggcagaagaaacgctaaaagccctt-aaagactcggt 2186
Query: 2353 gaaagatttgggtatcaatccagaatggatttcaaaagttgaaaaccttaatgcagcttt 2412
||||||||| || ||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 2187 gaaagatttaggcatcaatccagaatggatttcaaaagttgaaaaccttaatacagcttt 2246
Query: 2413 gaatgaattcaaaaatggcaaaaataaggatttcagcaaggtaacacaagcaaaaagcga 2472
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 2247 gaatgaattcaaaaatggcaaaaataaggatttcagcaaggtaatacaagcaaaaagcga 2306
Query: 2473 ccttgaaaattccattaaggatgtgctcatcaatcaagagataacggataaagttgacaa 2532
|||||||||||||||||| |||||| ||||||||||| ||||||||||||||||||||||
Sbjct: 2307 ccttgaaaattccattaaagatgtgatcatcaatcaaaagataacggataaagttgacaa 2366
Query: 2533 tctcaatcaggctgtattaagggctaaagcgataggcgattttagtggggtagagcaaga 2592
||||||||| ||| ||| || ||||| || | ||||||||| ||||||||||||||||
Sbjct: 2367 tctcaatcaagctatatcaatagctaaggcaacaggcgatttcagtggggtagagcaagc 2426
Query: 2593 gctagcc 2599
|||||||
Sbjct: 2427 gctagcc 2433
Score = 890 bits (2296), Expect = e-259
Identities = 487/537 (91%)
Strand = Plus / Plus
Query: 37 gatcaaacaccaagccaaacggcttttaatccacaacaatttatcaataatcttcaagtg 96
|||||||||||||||||||| |||||||| || || |||||||||||||||||||||||
Sbjct: 19 gatcaaacaccaagccaaacagcttttaacccgcagcaatttatcaataatcttcaagta 78
Query: 97 gcttttattaaacttgatagtgctgtcgcttcatttgatcccgatcaaaaaccaatcgtt 156
|||||| ||||| |||||| ||||||||||||||||||| ||||||||||||||||||
Sbjct: 79 gcttttcttaaagttgataacactgtcgcttcatttgatcctgatcaaaaaccaatcgtt 138
Query: 157 gataagaacgatagggataacaggcaagcttttaatgtaatctcgcaattaagggaagaa 216
|||||||| |||||||||||||||||||||||| | |||||||||| ||||||| |||
Sbjct: 139 gataagaatgatagggataacaggcaagcttttgagaaaatctcgcaactaagggaggaa 198
Query: 217 tacgccaataaagcgatcaaaaatcccaccaaaaagaatcagtatttttcagactttatc 276
| ||| |||||||||||||||||||| ||||||||||||||||||||||| |||||||
Sbjct: 199 ttcgctaataaagcgatcaaaaatcctgccaaaaagaatcagtatttttcaagctttatc 258
Query: 277 gataaaagcaatgatttgatcaacaaaaacgatctcattgatacagattcttccacaaag 336
||| |||| |||||| ||||||||| || |||||||||||||| |||||||| ||||
Sbjct: 259 agtaagagcagtgatttaatcaacaaagacagtctcattgatacaggttcttccataaag 318
Query: 337 agctttgaaaaatttggggctcagcgttaccaaatttttatgaattgggtgtcccatcaa 396
|||||| | ||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 agctttcagaaatttgggactcagcgttaccaaatttttatgaattgggtgtcccatcaa 378
Query: 397 aaagatccgtctaaaatcaacacccaaaaaatccgagattttatggaaaatatcatacaa 456
|||||||| ||||||||||||||||||| ||||||| |||||| |||||||||||||||
Sbjct: 379 aaagatccatctaaaatcaacacccaaagaatccgaagttttattgaaaatatcatacaa 438
Query: 457 ccccctatctctgatgataaagaaaaagcggagtttttgaggtctgccaaacaatctttt 516
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 439 ccccctatctctgatgataaagaaaaagcggagtttttgaggtctgccaaacaagctttt 498
Query: 517 gcaggaattatcatagggaaccaaacccgatcggatgaaaaattcatgggcgttttt 573
||||||||||||||||| ||||| | || ||| ||| |||||||||||||||| |||
Sbjct: 499 gcaggaattatcataggaaaccagatccaatcagatcaaaaattcatgggcgtgttt 555
Score = 609 bits (1573), Expect = e-174
Identities = 345/391 (88%)
Strand = Plus / Plus
Query: 3016 agcgaaattggacaattacgctactaacagccacacacgcattaatagcaatgtcaaaaa 3075
|||||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct: 3165 agcgaaattggacaattacgctactaacagccacacacgcattaatagcaatatccgaaa 3224
Query: 3076 tggaacaatcaatgaaaaagcgatcggcatgctaacgcaaaaaaaccctgagtggctcaa 3135
|||||||||||| ||||||| || ||||| ||| || |||||||||||||||||| ||
Sbjct: 3225 tggaacaatcaacgaaaaagagactagcatgttaatgcgaaaaaaccctgagtggcttaa 3284
Query: 3136 gcttgtgaatgataagatagttgcgcataatgtgggaagcgctcctttgtcaggttatga 3195
||| ||||||||||||||||||||||||||||||||||| ||||||||||||| |||||
Sbjct: 3285 gctcgtgaatgataagatagttgcgcataatgtgggaagtgctcctttgtcagcgtatga 3344
Query: 3196 taaaattggattcaaccaaaagaatatgaaaggttattctgattcgttcaggttttccac 3255
|||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct: 3345 taaaattggattcaaccaaaagaatatgaaagattattctgattcgttcaagttttccac 3404
Query: 3256 caagttgagcaatgccgtaaaaaacattaagtctgactttaagcaacttttaaccgattg 3315
|| ||||||||||||||||||| |||||||||||| |||| |||| |||||||| ||
Sbjct: 3405 caggttgagcaatgccgtaaaagacattaagtctggctttgtgcaatttttaaccaatat 3464
Query: 3316 catttctgcaggaacttacagcccgaagaaagc------ggaacatggagttaaaaatat 3369
||||| ||| |||||||| || |||||| |||||||||||| |||||||
Sbjct: 3465 attttctatgggatcttacagcttgatgaaagcaagtgtggaacatggagtcaaaaatac 3524
Query: 3370 taatacaaaaagtggtttccagaaatcttaa 3400
|||||||||| |||||||||| |||||||||
Sbjct: 3525 taatacaaaaggtggtttccaaaaatcttaa 3555
Score = 360 bits (929), Expect = 1e-99
Identities = 206/241 (85%)
Strand = Plus / Plus
Query: 2766 atctcggcggatcttcccctttgaaaaggtatgctaaagttgatgatctcagtaaggtag 2825
||||||||||| ||| ||||||||||| | ||| ||||| ||||||||||||||||||||
Sbjct: 2924 atctcggcggacctttccctttgaaaaagcatgataaagctgatgatctcagtaaggtag 2983
Query: 2826 ggctttcaagggagcaagaattgaatgagaaaattggcaatctcaatcaggcagtgtcag 2885
|||||||||||||||||||||||| | ||||||||| |||||||| |||| | |||
Sbjct: 2984 ggctttcaagggagcaagaattgactcagaaaattgaaaatctcaaccaggtgctaccag 3043
Query: 2886 aagctaaagcaggttcttttggcaacctagaacaaatgatggatggactcaaagattcta 2945
||||||||| | || ||||| ||||||||| |||||||| || |||||||||||||
Sbjct: 3044 aagctaaagtatgtcattttgacaacctagagcaaatgatagacaagctcaaagattcta 3103
Query: 2946 caaaaaagaatgttgtgaatctatggtttgaaggtgcaagaaaagtgcctattagtttgc 3005
|||||||||||||| ||||||||| ||||| |||||| ||||||||||| |||||||
Sbjct: 3104 caaaaaagaatgttatgaatctatatgttgaaagtgcaaaaaaagtgcctactagtttgt 3163
Query: 3006 c 3006
|
Sbjct: 3164 c 3164
Score = 354 bits (913), Expect = 9e-98
Identities = 203/227 (89%)
Strand = Plus / Plus
Query: 810 agcct---gttggggattggcttgatatttttttatcgtttgtatttaacaaagaacaat 866
||||| | ||||||||||||||||||||||||||| ||||| ||||||||| ||||||
Sbjct: 611 agcctactggtggggattggcttgatatttttttatcatttgtgtttaacaaaaaacaat 670
Query: 867 cttctgatctcaaagaaacgctcaatcaagagccaaggcctcatgttgaacaaaatgtag 926
|||| |||||||||||||||||| ||||||| ||| |||||||| ||| | || |||
Sbjct: 671 cttccgatctcaaagaaacgctcgatcaagaaccagttcctcatgtccaaccagatatag 730
Query: 927 cctctacccccacccacatacaaggcttaccgcctgaagctagggatttgcttgatgaaa 986
|| ||||| ||||| ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 731 ccactaccaccaccgacatacaaggcttaccgcctgaatctagggatttgcttgatgaaa 790
Query: 987 ggggtgatttttctaaattcactcttggtgatatggaaatgttggat 1033
||||| ||||||||||||||||||||||||||||||||||||| |||
Sbjct: 791 ggggtaatttttctaaattcactcttggtgatatggaaatgttagat 837
Score = 122 bits (315), Expect = 6e-28
Identities = 69/77 (90%)
Strand = Plus / Plus
Query: 2689 ccctttgaaaaggtatgctaaagttgatgatctcagtaaggtagggcaatcagatagccc 2748
||||||||||||| || |||||| ||||||||||||||||||||||| |||| || ||
Sbjct: 2838 ccctttgaaaaggcatactaaagctgatgatctcagtaaggtagggctttcagctaacca 2897
Query: 2749 tgaacccatttacgcta 2765
|||||||||||||||||
Sbjct: 2898 tgaacccatttacgcta 2914
Score = 72 bits (185), Expect = 8e-13
Identities = 40/43 (93%)
Strand = Plus / Plus
Query: 767 gatgaatctttgaaagagaggcaagaagcacaaaacaatggag 809
||||||||||||||||| |||||||||||| |||| |||||||
Sbjct: 556 gatgaatctttgaaagaaaggcaagaagcagaaaaaaatggag 598
Score = 25 bits (63), Expect = 1e+02
Identities = 13/14 (93%)
Strand = Plus / Plus
Query: 1 atggctaacgaaac 14
||| ||||||||||
Sbjct: 1 atgactaacgaaac 14
Score = 15 bits (40), Expect = 7e+04
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 2603 ctcaaaag 2610
||||||||
Sbjct: 2448 ctcaaaag 2455 |