>AB190941|1|G1|52693796|BAD51751.1|Helicobacter_pylori_OK139|+|1..3552|cagA|-|cytotoxin
Length = 3552
Score = 2576 bits (6648), Expect = 0.0
Identities = 1420/1567 (91%)
Strand = Plus / Plus
Query: 1034 tacaagttcaaccagttaccgattcacaataacgctctgtcttctatgctaatggggagt 1093
|||||||||||||| ||| ||||||||||||||||||||||||| || |||||||||||
Sbjct: 868 tacaagttcaaccaattattgattcacaataacgctctgtcttctgtgttaatggggagt 927
Query: 1094 catagcagcatagaacctgaaaaagtttcattgttgtatggggataatggtggtcctgaa 1153
|||| ||||||||||||||||||||||||| |||||||||| |||||||| ||||||
Sbjct: 928 cataatggcatagaacctgaaaaagtttcattattgtatgggggcaatggtggccctgaa 987
Query: 1154 gctaggcatgattggaacgccaccgttggttataaaaaccaacaaggcaacaatgtggcc 1213
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 988 gctaggcatgattggaacgccaccgttggttataaaaaccaacaaggcgacaatgtggct 1047
Query: 1214 acactcatcaatgcgcatcttaaaaacggcagcgggttagtcatagcgggtaatggaaat 1273
|||||||| |||| |||| | ||||||||||| |||||||||||||| ||| || ||
Sbjct: 1048 acactcattaatgtgcatatgaaaaacggcagtgggttagtcatagcaggtggtgagaaa 1107
Query: 1274 gggattaacaaccctagcttctatctctacaaaacagaccaactcacaggcttggaacaa 1333
||| ||||||||||||| || |||||||||||| |||||| |||||||||||| |||||
Sbjct: 1108 ggggttaacaaccctagtttttatctctacaaagaagaccagctcacaggcttgaaacaa 1167
Query: 1334 gcgttgagtcaagaagagatccaaaacaaagtggatttcatggaacttcttgcacaaaac 1393
|| ||||| ||||||||||||||||||||||| |||||||||||| ||||||||||||||
Sbjct: 1168 gcattgagccaagaagagatccaaaacaaagtagatttcatggaatttcttgcacaaaac 1227
Query: 1394 aacgctagattagataacttgagcgaggaagagaaagaaaagttccaaactgagattgga 1453
|| |||| |||||||||||||||| || ||||||||||||| ||||||| |||||||| |
Sbjct: 1228 aatgctaaattagataacttgagcaagaaagagaaagaaaaattccaaaatgagattgaa 1287
Query: 1454 aatttccaaaaagaccctaaggcttatttagactccctagggaatgatcgcattgctttt 1513
|||| ||||||||| ||||||||||||||||| ||||||||||||||| ||||||||||
Sbjct: 1288 gattttcaaaaagactctaaggcttatttagacgccctagggaatgatcacattgctttt 1347
Query: 1514 gtttctaaaaaagaccaaaagcatttagctttggttactgagtttggtaatggggaattg 1573
||||||||||||||| |||| ||||||||||| ||| |||||||||||||||||||||||
Sbjct: 1348 gtttctaaaaaagacaaaaaacatttagctttagttgctgagtttggtaatggggaattg 1407
Query: 1574 agctatactctcaaagattatgggaaaaaacaagatagagctttagatagggagacaaaa 1633
||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 1408 agctacactctcaaagattatgggaaaaaacaagataaagctttagatagggagacaaaa 1467
Query: 1634 accactcttcaaggtaacctaaagcatgatggcgtgatgtttgtcaattattccaatttc 1693
||||||||||||||||||||||| |||||||||||||||||||| |||||||| ||||||
Sbjct: 1468 accactcttcaaggtaacctaaaacatgatggcgtgatgtttgttaattattctaatttc 1527
Query: 1694 aaatacaccaacgcctccaagagtcctgatgagggtataggcgctacgaatggcgtttcc 1753
|||||||||||||||||||||||||||||| ||||| | || ||||||||||||||||||
Sbjct: 1528 aaatacaccaacgcctccaagagtcctgataagggtgtgggtgctacgaatggcgtttcc 1587
Query: 1754 catttggaagcaaattttagcaaggtggctgtctttaatttgcctgatttaaatggtctc 1813
||||||||||||||| |||| ||||| |||||||||||||||||| |||||||| ||||
Sbjct: 1588 catttggaagcaaatcttagtaaggtagctgtctttaatttgcctaatttaaataatctc 1647
Query: 1814 gctatctctagttttgcaaggcggaatttagaggataaactgatcgctaaaggattgccc 1873
|||||| ||||| | |||||| | ||||| ||||||||| |||||||||||| ||
Sbjct: 1648 gctatcaatagttatataaggcgagacttagaagataaactgtgggctaaaggattgtcc 1707
Query: 1874 ccaaaagacgctaataagatcatcaaagactttttgaacagcaacaaggaattgcttgaa 1933
||| |||| | ||||||| |||||||||||||||||||||||||||| |||||| |||||
Sbjct: 1708 ccacaagaagttaataagctcatcaaagactttttgaacagcaacaaagaattggttgaa 1767
Query: 1934 aaagctttagacttcaataaagctgtagctgaagctaaaaatacaggcaattatgacgga 1993
||||||||| ||||||||||| |||||||||||||||||| |||||||||||||||| |
Sbjct: 1768 aaagctttaaacttcaataaaactgtagctgaagctaaaaccacaggcaattatgacgaa 1827
Query: 1994 gtgaaaaaagctcaaaaagatcttgaaaaatctataaggaaacgagagcgtttagagcaa 2053
|||||||||||||| |||||||||||||||||| ||||||||||||||| ||||||| ||
Sbjct: 1828 gtgaaaaaagctcagaaagatcttgaaaaatctctaaggaaacgagagcatttagagaaa 1887
Query: 2054 gaaataacgaaaaaatttgagaacaagagcggcaacaaaaataaaatggaagcgaaagtt 2113
||| ||||||||||||| ||||||| | |||||||||||||| ||||||||| |||| |
Sbjct: 1888 gaagtaacgaaaaaattggagaacagaaacggcaacaaaaatagaatggaagcaaaagct 1947
Query: 2114 caagctaacagccaaaaagatgggatttttaagcttatcaatgaagaggctcataaggaa 2173
||||||||||||||||||||| ||||||| ||||||||||||||||| |||||||
Sbjct: 1948 caagctaacagccaaaaagataagatttttgcaattatcaatgaagaggctggtaaggaa 2007
Query: 2174 gcaagaatcgccgcttacgctcagaatcttaaaggcatcaggagggaattgtttgataaa 2233
|||||| | ||| ||| || ||||||||||||||||||||| | |||||||| ||||||
Sbjct: 2008 gcaagagtggccccttgcgttcagaatcttaaaggcatcagaatggaattgtctgataag 2067
Query: 2234 gttaaaaatctcaacaagaatttgaaagactttgataaatcttttgatgcgctcaaaagt 2293
|| |||| ||||||||||||||||||||||||||||||||||||||| |||||| |
Sbjct: 2068 cttgaaaacatcaacaagaatttgaaagactttgataaatcttttgatgaattcaaaaat 2127
Query: 2294 ggcaaaaataaggatttcagcaaggcagaagaaacgctaaaagcccttgaaag-ctcggt 2352
|||||||||||||||||||||||| ||||||||||||||||||||||| |||| ||||||
Sbjct: 2128 ggcaaaaataaggatttcagcaagacagaagaaacgctaaaagccctt-aaagactcggt 2186
Query: 2353 gaaagatttgggtatcaatccagaatggatttcaaaagttgaaaaccttaatgcagcttt 2412
||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 2187 gaaagatttaggtatcaatccagaatggatttcaaaagttgaaaaccttaatacagcttt 2246
Query: 2413 gaatgaattcaaaaatggcaaaaataaggatttcagcaaggtaacacaagcaaaaagcga 2472
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 2247 gaatgaattcaaaaatggcaaaaataaggatttcagcaaggtaatacaagcaaaaagcga 2306
Query: 2473 ccttgaaaattccattaaggatgtgctcatcaatcaagagataacggataaagttgacaa 2532
|||||||||||||||||| |||||| ||||||||||| ||||||||||||||||||||||
Sbjct: 2307 ccttgaaaattccattaaagatgtgatcatcaatcaaaagataacggataaagttgacaa 2366
Query: 2533 tctcaatcaggctgtattaagggctaaagcgataggcgattttagtggggtagagcaaga 2592
||||||||| ||||||| || ||||| || | ||||||||| ||| ||||||||||||
Sbjct: 2367 tctcaatcaagctgtatcaatagctaaggcaacaggcgatttcagtagggtagagcaagc 2426
Query: 2593 gctagcc 2599
|||||||
Sbjct: 2427 gctagcc 2433
Score = 914 bits (2360), Expect = e-266
Identities = 495/537 (92%)
Strand = Plus / Plus
Query: 37 gatcaaacaccaagccaaacggcttttaatccacaacaatttatcaataatcttcaagtg 96
|||||||||||||||||||| |||||||| || || |||||||||||||||||||||||
Sbjct: 19 gatcaaacaccaagccaaacagcttttaacccgcagcaatttatcaataatcttcaagta 78
Query: 97 gcttttattaaacttgatagtgctgtcgcttcatttgatcccgatcaaaaaccaatcgtt 156
|||||| ||||| |||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct: 79 gcttttcttaaagttgataacgctgtcgcttcatttgatcctgatcaaaaaccaatcgtt 138
Query: 157 gataagaacgatagggataacaggcaagcttttaatgtaatctcgcaattaagggaagaa 216
|||||||| |||||||||||||||||||||||| | |||||||||| ||||||| |||
Sbjct: 139 gataagaatgatagggataacaggcaagcttttgagaaaatctcgcaactaagggaggaa 198
Query: 217 tacgccaataaagcgatcaaaaatcccaccaaaaagaatcagtatttttcagactttatc 276
| ||| |||||||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct: 199 ttcgctaataaagcgatcaaaaatcctgccaaaaagaatcagtatttttcaaactttatc 258
Query: 277 gataaaagcaatgatttgatcaacaaaaacgatctcattgatacagattcttccacaaag 336
||| |||| |||||| ||||||||| || |||||||||||||| |||||||| ||||
Sbjct: 259 agtaagagcagtgatttaatcaacaaagacagtctcattgatacaggttcttccataaag 318
Query: 337 agctttgaaaaatttggggctcagcgttaccaaatttttatgaattgggtgtcccatcaa 396
|||||| | ||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 agctttcagaaatttgggactcagcgttaccaaatttttatgaattgggtgtcccatcaa 378
Query: 397 aaagatccgtctaaaatcaacacccaaaaaatccgagattttatggaaaatatcatacaa 456
|||||||| ||||||||||||||||||| ||||||| ||||||||||||||||||||||
Sbjct: 379 aaagatccatctaaaatcaacacccaaagaatccgaagttttatggaaaatatcatacaa 438
Query: 457 ccccctatctctgatgataaagaaaaagcggagtttttgaggtctgccaaacaatctttt 516
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 439 ccccctatctctgatgataaagaaaaagcggagtttttgaggtctgccaaacaagctttt 498
Query: 517 gcaggaattatcatagggaaccaaacccgatcggatgaaaaattcatgggcgttttt 573
||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||
Sbjct: 499 gcaggaattatcatagggaaccaaatccgatcggatgaaaaattcatgggcgtgttt 555
Score = 511 bits (1319), Expect = e-145
Identities = 274/295 (93%)
Strand = Plus / Plus
Query: 3016 agcgaaattggacaattacgctactaacagccacacacgcattaatagcaatgtcaaaaa 3075
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3159 agcgaaattggacaattacgctactaacagccacacacgcattaatagcaatgtcaaaaa 3218
Query: 3076 tggaacaatcaatgaaaaagcgatcggcatgctaacgcaaaaaaaccctgagtggctcaa 3135
|||| |||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct: 3219 tggagcaatcaatgaaaaagcgactggtatgctaacgcaaaaaaaccctgagtggctcaa 3278
Query: 3136 gcttgtgaatgataagatagttgcgcataatgtgggaagcgctcctttgtcaggttatga 3195
||| ||||||||||||||||||||||||||||||||||||| | ||||||||| |||||
Sbjct: 3279 gctcgtgaatgataagatagttgcgcataatgtgggaagcgtttctttgtcagagtatga 3338
Query: 3196 taaaattggattcaaccaaaagaatatgaaaggttattctgattcgttcaggttttccac 3255
||||||||| |||||||| ||||||||||||| ||||||||||||||||| |||||||||
Sbjct: 3339 taaaattggcttcaaccagaagaatatgaaagattattctgattcgttcaagttttccac 3398
Query: 3256 caagttgagcaatgccgtaaaaaacattaagtctgactttaagcaacttttaacc 3310
|||||||| |||||| ||||| |||||||||||| |||| |||| ||||||||
Sbjct: 3399 caagttgaacaatgctataaaagacattaagtctggctttgtgcaatttttaacc 3453
Score = 365 bits (942), Expect = e-101
Identities = 208/241 (86%)
Strand = Plus / Plus
Query: 2766 atctcggcggatcttcccctttgaaaaggtatgctaaagttgatgatctcagtaaggtag 2825
||||||||||| ||| ||||||||||| | ||| |||||||| |||||||||||||||||
Sbjct: 2918 atctcggcggacctttccctttgaaaaagcatgataaagttggtgatctcagtaaggtag 2977
Query: 2826 ggctttcaagggagcaagaattgaatgagaaaattggcaatctcaatcaggcagtgtcag 2885
||||||||||||||||||||||||| | || |||| ||||||||| ||||| | ||||
Sbjct: 2978 ggctttcaagggagcaagaattgaaacaaaagattgacaatctcaaccaggcgctatcag 3037
Query: 2886 aagctaaagcaggttcttttggcaacctagaacaaatgatggatggactcaaagattcta 2945
||||||||||| || ||||| ||||||||| |||||||| || |||||||||||||
Sbjct: 3038 aagctaaagcatgtcattttgacaacctagatcaaatgatagacaagctcaaagattcta 3097
Query: 2946 caaaaaagaatgttgtgaatctatggtttgaaggtgcaagaaaagtgcctattagtttgc 3005
|||||||||||||| ||||||||| ||||| |||||| ||||||||||| |||||||
Sbjct: 3098 caaaaaagaatgttatgaatctatatgttgaaagtgcaaaaaaagtgcctactagtttgt 3157
Query: 3006 c 3006
|
Sbjct: 3158 c 3158
Score = 351 bits (906), Expect = 6e-97
Identities = 202/227 (89%)
Strand = Plus / Plus
Query: 810 agcct---gttggggattggcttgatatttttttatcgtttgtatttaacaaagaacaat 866
||||| | ||||||||||||||||||||||||||| ||||| ||||||||| ||||||
Sbjct: 611 agcctactggtggggattggcttgatatttttttatcatttgtgtttaacaaaaaacaat 670
Query: 867 cttctgatctcaaagaaacgctcaatcaagagccaaggcctcatgttgaacaaaatgtag 926
|||| |||||||||||||||||| ||||||| ||| ||||||| ||| | || |||
Sbjct: 671 cttccgatctcaaagaaacgctcgatcaagaaccagtttctcatgtccaaccagatatag 730
Query: 927 cctctacccccacccacatacaaggcttaccgcctgaagctagggatttgcttgatgaaa 986
|| ||||| ||||| ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 731 ccactaccaccaccgacatacaaggcttaccgcctgaatctagggatttgcttgatgaaa 790
Query: 987 ggggtgatttttctaaattcactcttggtgatatggaaatgttggat 1033
||||| ||||||||||||||||||||||||||||||||||||| |||
Sbjct: 791 ggggtaatttttctaaattcactcttggtgatatggaaatgttagat 837
Score = 115 bits (297), Expect = 6e-26
Identities = 66/75 (88%)
Strand = Plus / Plus
Query: 2691 ctttgaaaaggtatgctaaagttgatgatctcagtaaggtagggcaatcagatagccctg 2750
|||||||| || || ||||||||||| |||||||||||||||||| |||| || || ||
Sbjct: 2834 ctttgaaagggcatactaaagttgataatctcagtaaggtagggctttcagctaaccatg 2893
Query: 2751 aacccatttacgcta 2765
|||||||||||||||
Sbjct: 2894 aacccatttacgcta 2908
Score = 72 bits (185), Expect = 8e-13
Identities = 40/43 (93%)
Strand = Plus / Plus
Query: 767 gatgaatctttgaaagagaggcaagaagcacaaaacaatggag 809
||||||||||||||||| |||||||||||| |||| |||||||
Sbjct: 556 gatgaatctttgaaagaaaggcaagaagcagaaaaaaatggag 598
Score = 37 bits (94), Expect = 3e-02
Identities = 20/22 (91%)
Strand = Plus / Plus
Query: 2635 tcaaaaaaatgaaagtttcaat 2656
||||||||||||| |||||||
Sbjct: 2475 tcaaaaaaatgaagatttcaat 2496
Score = 25 bits (63), Expect = 1e+02
Identities = 13/14 (93%)
Strand = Plus / Plus
Query: 1 atggctaacgaaac 14
||| ||||||||||
Sbjct: 1 atgactaacgaaac 14
Score = 15 bits (40), Expect = 7e+04
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 2603 ctcaaaag 2610
||||||||
Sbjct: 2448 ctcaaaag 2455 |