>AB190939|1|G1|52693792|BAD51749.1|Helicobacter_pylori_OK118|+|1..3531|cagA|-|cytotoxin
Length = 3531
Score = 2516 bits (6493), Expect = 0.0
Identities = 1392/1518 (92%)
Strand = Plus / Plus
Query: 1034 tacaagttcaaccagttaccgattcacaataacgctctgtcttctatgctaatggggagt 1093
||||||||||| || ||| ||| ||||| ||| ||||||||||| ||||||||||||||
Sbjct: 874 tacaagttcaatcaattattgatccacaacaacactctgtcttctgtgctaatggggagt 933
Query: 1094 catagcagcatagaacctgaaaaagtttcattgttgtatggggataatggtggtcctgaa 1153
||||||| ||||||||||||||||| |||||| |||||||||||||||||||||||||||
Sbjct: 934 catagcaacatagaacctgaaaaagcttcattattgtatggggataatggtggtcctgaa 993
Query: 1154 gctaggcatgattggaacgccaccgttggttataaaaaccaacaaggcaacaatgtggcc 1213
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 994 gctaggcatgattggaacgccaccgttggttataaaaaccaacaaggcaacaatgtggcc 1053
Query: 1214 acactcatcaatgcgcatcttaaaaacggcagcgggttagtcatagcgggtaatggaaat 1273
|||||||| |||||||||||||| ||||||||||||||||||||||||||||||| ||
Sbjct: 1054 acactcattaatgcgcatcttaataacggcagcgggttagtcatagcgggtaatgaggat 1113
Query: 1274 gggattaacaaccctagcttctatctctacaaaacagaccaactcacaggcttggaacaa 1333
|||||||| |||||||||||||||||||| ||| ||||||||||||||||||| |||||
Sbjct: 1114 gggattaaaaaccctagcttctatctctataaagaagaccaactcacaggcttgaaacaa 1173
Query: 1334 gcgttgagtcaagaagagatccaaaacaaagtggatttcatggaacttcttgcacaaaac 1393
|| ||||||||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct: 1174 gcaatgagtcaagaagagatccaaaacaaagtggatttcatggaatttcttgcaaaaaac 1233
Query: 1394 aacgctagattagataacttgagcgaggaagagaaagaaaagttccaaactgagattgga 1453
||||||| |||||| |||||||||||| ||||||||||||| ||||||||||||||||||
Sbjct: 1234 aacgctaaattagacaacttgagcgagaaagagaaagaaaaattccaaactgagattgga 1293
Query: 1454 aatttccaaaaagaccctaaggcttatttagactccctagggaatgatcgcattgctttt 1513
|||||||||||||||| |||||||||||||||| ||||||||||||||| ||||||||||
Sbjct: 1294 aatttccaaaaagaccgtaaggcttatttagacgccctagggaatgatcacattgctttt 1353
Query: 1514 gtttctaaaaaagacc-aaaagcatttagctttggttactgagtttggtaatggggaatt 1572
|||||||||||||||| |||| |||||||||||||||||||||||||||||||||||| |
Sbjct: 1354 gtttctaaaaaagacccaaaa-catttagctttggttactgagtttggtaatggggaagt 1412
Query: 1573 gagctatactctcaaagattatgggaaaaaacaagatagagctttagatagggagacaaa 1632
|||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||
Sbjct: 1413 gagctatactctcaaagattatgggaaaaaacaagataaagctttagatggggagacaaa 1472
Query: 1633 aaccactcttcaaggtaacctaaagcatgatggcgtgatgtttgtcaattattccaattt 1692
||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||
Sbjct: 1473 aaccactcttcaaggtagcctaaaatatgatggcgtgatgtttgtcaattattccaattt 1532
Query: 1693 caaatacaccaacgcctccaagagtcctgatgagggtataggcgctacgaatggcgtttc 1752
||||||||||||||||||||||||||||||| |||| | || ||| |||||||||||||
Sbjct: 1533 caaatacaccaacgcctccaagagtcctgataagggcgtgggtgctgcgaatggcgtttc 1592
Query: 1753 ccatttggaagcaaattttagcaaggtggctgtctttaatttgcctgatttaaatggtct 1812
||||||||||||||||||||||||||| |||||||||||||||||| |||||||| |||
Sbjct: 1593 ccatttggaagcaaattttagcaaggtagctgtctttaatttgcctaatttaaataatct 1652
Query: 1813 cgctatctctagttttgcaaggcggaatttagaggataaactgatcgctaaaggattgcc 1872
||||||| ||| || | |||||| ||||||| |||||| || | |||||||||||| |
Sbjct: 1653 cgctatcactaattatataaggcgagatttagaagataaattgttggctaaaggattgtc 1712
Query: 1873 cccaaaagacgctaataagatcatcaaagactttttgaacagcaacaaggaattgcttga 1932
|||| |||| ||||||||| ||||||| |||||||||||||||||||| ||| || |||
Sbjct: 1713 cccacaagaagctaataagctcatcaaggactttttgaacagcaacaaagaaatggttgg 1772
Query: 1933 aaaagctttagacttcaataaagctgtagctgaagctaaaaatacaggcaattatgacgg 1992
|||||||| | ||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 1773 aaaagcttcatacttcaataaagctgtagctgaagctaaaaacacaggcaattatgacga 1832
Query: 1993 agtgaaaaaagctcaaaaagatcttgaaaaatctataaggaaacgagagcgtttagagca 2052
||||||||| ||||| |||||||||||||||||| ||||||||||||||| ||||||| |
Sbjct: 1833 agtgaaaaaggctcagaaagatcttgaaaaatctctaaggaaacgagagcatttagagaa 1892
Query: 2053 agaaataacgaaaaaatttgagaacaagagcggcaacaaaaataaaatggaagcgaaagt 2112
|||| || |||||||||| |||| || | || ||||||||||| ||||||||| ||||
Sbjct: 1893 agaagtagcgaaaaaattggagagcagaaacgacaacaaaaatagaatggaagcaaaagc 1952
Query: 2113 tcaagctaacagccaaaaagatgggatttttaagcttatcaatgaagaggctcataagga 2172
|||||||||||||||||||||| ||||||| | | |||||| |||||||| ||||||
Sbjct: 1953 tcaagctaacagccaaaaagataagatttttgcgttgatcaatcaagaggctagtaagga 2012
Query: 2173 agcaagaatcgccgcttacgctcagaatcttaaaggcatcaggagggaattgtttgataa 2232
||||||| || |||| || || ||||||||||||||||||||| ||||||||||||||
Sbjct: 2013 agcaagagcggctgctttcgatccgaatcttaaaggcatcaggagcgaattgtttgataa 2072
Query: 2233 agttaaaaatctcaacaagaatttgaaagactttgataaatcttttgatgcgctcaaaag 2292
| || ||||| |||||||| ||||||||||||||| ||||||||||||| |||||||
Sbjct: 2073 acttgaaaatatcaacaaggatttgaaagactttggcaaatcttttgatgaactcaaaaa 2132
Query: 2293 tggcaaaaataaggatttcagcaaggcagaagaaacgctaaaagcccttgaaag-ctcgg 2351
|||||||||||| ||||||| |||||||||||||||||||||||||||| |||| |||||
Sbjct: 2133 tggcaaaaataatgatttcaacaaggcagaagaaacgctaaaagccctt-aaagactcgg 2191
Query: 2352 tgaaagatttgggtatcaatccagaatggatttcaaaagttgaaaaccttaatgcagctt 2411
|||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 2192 tgaaagatttaggtatcaatccagaatggatttcaaaaattgaaaaccttaatgcagctt 2251
Query: 2412 tgaatgaattcaaaaatggcaaaaataaggatttcagcaaggtaacacaagcaaaaagcg 2471
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2252 tgaatgaactcaaaaatggcaaaaataaggatttcagcaaggtaacacaagcaaaaagcg 2311
Query: 2472 accttgaaaattccattaaggatgtgctcatcaatcaagagataacggataaagttgaca 2531
|||||||||||||||||||||||||| |||| |||||| |||||||||||||||||||||
Sbjct: 2312 accttgaaaattccattaaggatgtgatcattaatcaaaagataacggataaagttgaca 2371
Query: 2532 atctcaatcaggctgtat 2549
||||||||||||||||||
Sbjct: 2372 atctcaatcaggctgtat 2389
Score = 955 bits (2465), Expect = e-279
Identities = 524/573 (91%)
Strand = Plus / Plus
Query: 1 atggctaacgaaaccatcaatcaaacaaaaaaaccagatcaaacaccaagccaaacggct 60
||| |||||||||| || ||||||||| || ||||||||||||||||| |||||||| |
Sbjct: 1 atgactaacgaaactattgatcaaacaacaacaccagatcaaacaccaaaccaaacggat 60
Query: 61 tttaatccacaacaatttatcaataatcttcaagtggcttttattaaacttgatagtgct 120
||| ||| |||| ||||||||||||||||||||| |||||| ||||| |||||| |||
Sbjct: 61 tttgttccgcaacgatttatcaataatcttcaagtagcttttcttaaagttgataacgct 120
Query: 121 gtcgcttcatttgatcccgatcaaaaaccaatcgttgataagaacgatagggataacagg 180
||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct: 121 gtcgcttcatttgatcctgatcaaaaaccaatcgttgataagaatgatagggataacagg 180
Query: 181 caagcttttaatgtaatctcgcaattaagggaagaatacgccaataaagcgatcaaaaat 240
||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 caagcttttgagaaaatctcgcaattaagggaagaatacgccaataaagcgatcaaaaat 240
Query: 241 cccaccaaaaagaatcagtatttttcagactttatcgataaaagcaatgatttgatcaac 300
|| ||||||||||||||||| ||||||||||||||| |||| ||||||||||||||||||
Sbjct: 241 cctaccaaaaagaatcagtacttttcagactttatcaataagagcaatgatttgatcaac 300
Query: 301 aaaaacgatctcattgatacagattcttccacaaagagctttgaaaaatttggggctcag 360
||| || ||||||||| | |||||||||| | |||||||| |||||||||| ||||
Sbjct: 301 aaagacaatctcattgctgtagattcttccgtagagagctttcggaaatttggggatcag 360
Query: 361 cgttaccaaatttttatgaattgggtgtcccatcaaaaagatccgtctaaaatcaacacc 420
|||||||||||||||| || ||||||||| | ||||||||||||||||||||||||||||
Sbjct: 361 cgttaccaaatttttacgagttgggtgtctcttcaaaaagatccgtctaaaatcaacacc 420
Query: 421 caaaaaatccgagattttatggaaaatatcatacaaccccctatctctgatgataaagaa 480
||| |||||||| ||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 421 caacaaatccgaaattttatggaaaatatcatacaaccccctatctctgatgataaggaa 480
Query: 481 aaagcggagtttttgaggtctgccaaacaatcttttgcaggaattatcatagggaaccaa 540
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 aaagcagagtttttgaggtctgccaaacaatcttttgcaggaattatcatagggaaccaa 540
Query: 541 acccgatcggatgaaaaattcatgggcgttttt 573
| ||||||||||||||||||||||||||| |||
Sbjct: 541 atccgatcggatgaaaaattcatgggcgtgttt 573
Score = 506 bits (1306), Expect = e-143
Identities = 269/284 (95%)
Strand = Plus / Plus
Query: 3006 ctagttcgcaagcgaaattggacaattacgctactaacagccacacacgcattaatagca 3065
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3134 ctagtttgcaagcgaaattggacaattacgctactaacagccacacacgcattaatagca 3193
Query: 3066 atgtcaaaaatggaacaatcaatgaaaaagcgatcggcatgctaacgcaaaaaaaccctg 3125
||||| ||| |||| |||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 3194 atgtccaaagtggagcaatcaatgaaaaagcgactggcatgctaacgcaaaaaaaccctg 3253
Query: 3126 agtggctcaagcttgtgaatgataagatagttgcgcataatgtgggaagcgctcctttgt 3185
||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 3254 agtggctcaagctcgtgaatgataagatagttgcgcataatgtgggaagcgctcatttgt 3313
Query: 3186 caggttatgataaaattggattcaaccaaaagaatatgaaaggttattctgattcgttca 3245
||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 3314 cagagtatgataaaattggattcaaccaaaagaatatgaaagattattctgattcgttca 3373
Query: 3246 ggttttccaccaagttgagcaatgccgtaaaaaacattaagtct 3289
||||||||||||||||| |||||| |||||| |||||||||||
Sbjct: 3374 agttttccaccaagttgaacaatgctgtaaaagacattaagtct 3417
Score = 376 bits (969), Expect = e-104
Identities = 204/217 (94%)
Strand = Plus / Plus
Query: 817 tggggattggcttgatatttttttatcgtttgtatttaacaaagaacaatcttctgatct 876
||||||||||||||||||||||||||| ||||||||||||||| |||||||||| |||||
Sbjct: 627 tggggattggcttgatatttttttatcatttgtatttaacaaaaaacaatcttccgatct 686
Query: 877 caaagaaacgctcaatcaagagccaaggcctcatgttgaacaaaatgtagcctctacccc 936
||||||||||||||||||||||||||||||| || ||||||||||| ||||| ||||| |
Sbjct: 687 caaagaaacgctcaatcaagagccaaggcctgattttgaacaaaatttagccactaccac 746
Query: 937 cacccacatacaaggcttaccgcctgaagctagggatttgcttgatgaaaggggtgattt 996
|||| |||||||||||||||||||||||||||| ||||||||||||||||||||| ||||
Sbjct: 747 caccgacatacaaggcttaccgcctgaagctagagatttgcttgatgaaaggggtaattt 806
Query: 997 ttctaaattcactcttggtgatatggaaatgttggat 1033
|| ||||||||||||||||||| ||||||||||||||
Sbjct: 807 ttttaaattcactcttggtgatgtggaaatgttggat 843
Score = 267 bits (688), Expect = 2e-71
Identities = 152/176 (86%)
Strand = Plus / Plus
Query: 2782 ccctttgaaaaggtatgctaaagttgatgatctcagtaaggtagggctttcaagggagca 2841
|||||||| ||| |||| |||| ||||||||||||| ||||||||||||||||| ||
Sbjct: 2919 ccctttgagaagaagtgctgcagttaatgatctcagtaaagtagggctttcaagggaaca 2978
Query: 2842 agaattgaatgagaaaattggcaatctcaatcaggcagtgtcagaagctaaagcaggttc 2901
|||||||| | | ||||||| ||||||||||||| || |||||||||||| |||||
Sbjct: 2979 agaattgactcgtagaattggcgatctcaatcaggcggtatcagaagctaaaacaggtca 3038
Query: 2902 ttttggcaacctagaacaaatgatggatggactcaaagattctacaaaaaagaatg 2957
|||||||||||||||||||| ||| |||| ||||||||||||||| ||||||||||
Sbjct: 3039 ttttggcaacctagaacaaaagatagatgaactcaaagattctacgaaaaagaatg 3094
Score = 67 bits (172), Expect = 3e-11
Identities = 38/44 (86%)
Strand = Plus / Plus
Query: 2566 aggcgattttagtggggtagagcaagagctagccaaactcaaaa 2609
||||||||| ||| ||||||||||| |||||| |||||||||
Sbjct: 2406 aggcgatttcagtaaggtagagcaagccctagccgaactcaaaa 2449
Score = 47 bits (121), Expect = 2e-05
Identities = 28/31 (90%)
Strand = Plus / Plus
Query: 785 aggcaagaagcacaaaacaatggagagcctg 815
|||||||||||| |||| |||| ||||||||
Sbjct: 592 aggcaagaagcagaaaaaaatgcagagcctg 622
Score = 45 bits (116), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 2743 tagccctgaacccatttacgcta 2765
|||||||||||||||||||||||
Sbjct: 2862 tagccctgaacccatttacgcta 2884
Score = 23 bits (60), Expect = 3e+02
Identities = 12/12 (100%)
Strand = Plus / Plus
Query: 755 gatgaatctttg 766
||||||||||||
Sbjct: 574 gatgaatctttg 585
Score = 18 bits (45), Expect = 2e+04
Identities = 9/9 (100%)
Strand = Plus / Plus
Query: 2988 aagtgccta 2996
|||||||||
Sbjct: 3125 aagtgccta 3133
Score = 13 bits (35), Expect = 3e+05
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2972 tttgaag 2978
|||||||
Sbjct: 3096 tttgaag 3102 |