>AB190934|1|G1|52693782|BAD51744.1|Helicobacter_pylori_F37|+|1..3519|cagA|-|cytotoxin
Length = 3519
Score = 2468 bits (6368), Expect = 0.0
Identities = 1374/1518 (91%)
Strand = Plus / Plus
Query: 1034 tacaagttcaaccagttaccgattcacaataacgctctgtcttctatgctaatggggagt 1093
||||||||||| || ||| ||| |||||||||||||| |||||| ||||||||||| ||
Sbjct: 862 tacaagttcaatcaattattgatccacaataacgctctatcttctgtgctaatggggggt 921
Query: 1094 catagcagcatagaacctgaaaaagtttcattgttgtatggggataatggtggtcctgaa 1153
||||||| ||||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct: 922 catagcaacatagaacctgaaaaagtttcgttattgtatggggataatggtggtcctgaa 981
Query: 1154 gctaggcatgattggaacgccaccgttggttataaaaaccaacaaggcaacaatgtggcc 1213
|||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||
Sbjct: 982 gctaggcatgattggaacgccaccgttggttataaagaccaacaaggcagtaatgtggcc 1041
Query: 1214 acactcatcaatgcgcatcttaaaaacggcagcgggttagtcatagcgggtaatggaaat 1273
|||||||| ||||| |||||||| ||||||||||||||| ||||||||||||||| ||||
Sbjct: 1042 acactcattaatgcacatcttaataacggcagcgggttaatcatagcgggtaatgaaaat 1101
Query: 1274 gggattaacaaccctagcttctatctctacaaaacagaccaactcacaggcttggaacaa 1333
|||||||| |||||||||||||||||||| ||| ||| ||||||||||| ||| |||||
Sbjct: 1102 gggattaaaaaccctagcttctatctctataaagaagatcaactcacaggtttgaaacaa 1161
Query: 1334 gcgttgagtcaagaagagatccaaaacaaagtggatttcatggaacttcttgcacaaaac 1393
|| |||||||||||||||||||||||||||||||||||||||||| |||| | | ||||
Sbjct: 1162 gcattgagtcaagaagagatccaaaacaaagtggatttcatggaatttctcgtgcgaaac 1221
Query: 1394 aacgctagattagataacttgagcgaggaagagaaagaaaagttccaaactgagattgga 1453
||||||| |||||||||||||||| || ||||||||||||| |||||||||||||||| |
Sbjct: 1222 aacgctaaattagataacttgagcaagaaagagaaagaaaaattccaaactgagattgaa 1281
Query: 1454 aatttccaaaaagaccctaaggcttatttagactccctagggaatgatcgcattgctttt 1513
|||||||||||| |||||||||||||||| ||| | || |||||||||| ||||||||||
Sbjct: 1282 aatttccaaaaaaaccctaaggcttatttggacgctctggggaatgatcacattgctttt 1341
Query: 1514 gtttctaaaaaagacc-aaaagcatttagctttggttactgagtttggtaatggggaatt 1572
|||||||||||||||| |||| |||||||||||||||||||||||||||||||||||| |
Sbjct: 1342 gtttctaaaaaagacccaaaa-catttagctttggttactgagtttggtaatggggaagt 1400
Query: 1573 gagctatactctcaaagattatgggaaaaaacaagatagagctttagatagggagacaaa 1632
|||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||
Sbjct: 1401 gagctatactctcaaagattatgggaaaaaacaagataaagctttagatggggagacaaa 1460
Query: 1633 aaccactcttcaaggtaacctaaagcatgatggcgtgatgtttgtcaattattccaattt 1692
||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||
Sbjct: 1461 aaccactcttcaaggtagcctaaaatatgatggcgtgatgtttgtcaattattccaattt 1520
Query: 1693 caaatacaccaacgcctccaagagtcctgatgagggtataggcgctacgaatggcgtttc 1752
||||||||||||||||||||||||||||||| |||| | ||| |||||||||| |||||
Sbjct: 1521 caaatacaccaacgcctccaagagtcctgataagggcgtgggcactacgaatggtgtttc 1580
Query: 1753 ccatttggaagcaaattttagcaaggtggctgtctttaatttgcctgatttaaatggtct 1812
|| |||||||||||||||||||||||| ||||||| |||||||||| |||||||| |||
Sbjct: 1581 ccgtttggaagcaaattttagcaaggtagctgtctctaatttgcctaatttaaataatct 1640
Query: 1813 cgctatctctagttttgcaaggcggaatttagaggataaactgatcgctaaaggattgcc 1872
||||||| ||| || | |||||| ||||||| | ||| || |||||||||||| |
Sbjct: 1641 cgctatcactaattatataaggcgagatttagaagctaacttgtgggctaaaggattgtc 1700
Query: 1873 cccaaaagacgctaataagatcatcaaagactttttgaacagcaacaaggaattgcttga 1932
|||| |||| ||||||||| || |||||| |||||||||||||||||| ||| || |||
Sbjct: 1701 cccacaagaagctaataagctcctcaaaggctttttgaacagcaacaaagaaatggttgg 1760
Query: 1933 aaaagctttagacttcaataaagctgtagctgaagctaaaaatacaggcaattatgacgg 1992
||||| || | ||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct: 1761 aaaagtttcaaacttcaataaagctgtagctgaagctaaaaacacaggcaattatgatga 1820
Query: 1993 agtgaaaaaagctcaaaaagatcttgaaaaatctataaggaaacgagagcgtttagagca 2052
||||||||||||||| |||||||||||||||||| ||||||||||||||| ||||||| |
Sbjct: 1821 agtgaaaaaagctcagaaagatcttgaaaaatctctaaggaaacgagagcatttagagaa 1880
Query: 2053 agaaataacgaaaaaatttgagaacaagagcggcaacaaaaataaaatggaagcgaaagt 2112
|||| || |||||||||| |||| || | || ||||||||||| ||||||||| ||||
Sbjct: 1881 agaagtagcgaaaaaattggagagcagaaacgacaacaaaaatagaatggaagcaaaagc 1940
Query: 2113 tcaagctaacagccaaaaagatgggatttttaagcttatcaatgaagaggctcataagga 2172
|||||||||||||||||||||| ||||||| ||||||||| |||||||| ||||||
Sbjct: 1941 tcaagctaacagccaaaaagataagatttttgcacttatcaatcaagaggctagtaagga 2000
Query: 2173 agcaagaatcgccgcttacgctcagaatcttaaaggcatcaggagggaattgtttgataa 2232
||||||| ||||||| || || ||||||||||||||||||||| ||||||| ||||||
Sbjct: 2001 agcaagagcggccgctttcgatccgaatcttaaaggcatcaggagcgaattgtctgataa 2060
Query: 2233 agttaaaaatctcaacaagaatttgaaagactttgataaatcttttgatgcgctcaaaag 2292
| || |||| |||||||||||||||||||||||| ||||||||||||| |||||||
Sbjct: 2061 acttgcaaatatcaacaagaatttgaaagactttggcaaatcttttgatgaactcaaaaa 2120
Query: 2293 tggcaaaaataaggatttcagcaaggcagaagaaacgctaaaagcccttgaaag-ctcgg 2351
|||||||||||| |||||||||||||||||||||||||||||||||||| |||| |||||
Sbjct: 2121 tggcaaaaataatgatttcagcaaggcagaagaaacgctaaaagccctt-aaagactcgg 2179
Query: 2352 tgaaagatttgggtatcaatccagaatggatttcaaaagttgaaaaccttaatgcagctt 2411
|||||||||| || |||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 2180 tgaaagatttaggcatcaatccagaatggatttcaaaaattgaaaaccttaatgcagctt 2239
Query: 2412 tgaatgaattcaaaaatggcaaaaataaggatttcagcaaggtaacacaagcaaaaagcg 2471
||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 2240 tgaatgatttcaaaaatggcaaaaataaggatttcagtaaggtaacacaagcaaaaagcg 2299
Query: 2472 accttgaaaattccattaaggatgtgctcatcaatcaagagataacggataaagttgaca 2531
|||||||||||||||||||||||||| |||| |||||| |||||||||||||||||||||
Sbjct: 2300 accttgaaaattccattaaggatgtgatcattaatcaaaagataacggataaagttgaca 2359
Query: 2532 atctcaatcaggctgtat 2549
||||||||||||||||||
Sbjct: 2360 atctcaatcaggctgtat 2377
Score = 865 bits (2233), Expect = e-251
Identities = 469/504 (93%)
Strand = Plus / Plus
Query: 70 caacaatttatcaataatcttcaagtggcttttattaaacttgatagtgctgtcgcttca 129
|||| ||||||||||||||||||||| |||||||| ||| ||||||||||||||||||||
Sbjct: 58 caacgatttatcaataatcttcaagtagcttttatcaaagttgatagtgctgtcgcttca 117
Query: 130 tttgatcccgatcaaaaaccaatcgttgataagaacgatagggataacaggcaagctttt 189
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 118 tttgatcccgatcaaaaaccaatcgttgataagaatgatagggataacaggcaagctttt 177
Query: 190 aatgtaatctcgcaattaagggaagaatacgccaataaagcgatcaaaaatcccaccaaa 249
| |||||||||| ||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 178 gagaaaatctcgcaactaagggaagaatacgccaataaagcgatcaaaaatcctgccaaa 237
Query: 250 aagaatcagtatttttcagactttatcgataaaagcaatgatttgatcaacaaaaacgat 309
||||||||||||||||||||||||||| |||| ||||||||||||||||||||| || ||
Sbjct: 238 aagaatcagtatttttcagactttatcaataagagcaatgatttgatcaacaaagacaat 297
Query: 310 ctcattgatacagattcttccacaaagagctttgaaaaatttggggctcagcgttaccaa 369
||||||| | |||||||||| | |||||||| |||||||||| |||||||||||||
Sbjct: 298 ctcattgctgtagattcttccgtagagagctttcggaaatttggggatcagcgttaccaa 357
Query: 370 atttttatgaattgggtgtcccatcaaaaagatccgtctaaaatcaacacccaaaaaatc 429
||||||| || ||||||||||| ||||||||||||||||||||||||||||||| |||||
Sbjct: 358 atttttacgagttgggtgtcccttcaaaaagatccgtctaaaatcaacacccaacaaatc 417
Query: 430 cgagattttatggaaaatatcatacaaccccctatctctgatgataaagaaaaagcggag 489
||| ||||||||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct: 418 cgatattttatggaaaatatcatacaaccccctatctctgatgataaggaaaaagcagag 477
Query: 490 tttttgaggtctgccaaacaatcttttgcaggaattatcatagggaaccaaacccgatcg 549
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 478 tttttgaggtctgccaaacaatcttttgcaggaattatcatagggaaccaaatccgatcg 537
Query: 550 gatgaaaaattcatgggcgttttt 573
|||||||||||||||||||| |||
Sbjct: 538 gatgaaaaattcatgggcgtgttt 561
Score = 571 bits (1473), Expect = e-163
Identities = 321/359 (89%)
Strand = Plus / Plus
Query: 3016 agcgaaattggacaattacgctactaacagccacacacgcattaatagcaatgtcaaaaa 3075
||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct: 3132 agcgaaattggacaattacgctactaacagccacacacgcattaatagcaatgtccaaga 3191
Query: 3076 tggaacaatcaatgaaaaagcgatcggcatgctaacgcaaaaaaaccctgagtggctcaa 3135
||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||
Sbjct: 3192 tggaacaatcaatgaaaaagcgaccggtgtgctaacgcaaaaaaaccctgagtggctcaa 3251
Query: 3136 gcttgtgaatgataagatagttgcgcataatgtgggaagcgctcctttgtcaggttatga 3195
||| |||||||||||||||||||| |||||||||||||| |||| |||||||| |||||
Sbjct: 3252 gctcgtgaatgataagatagttgcacataatgtgggaagtgctcatttgtcagagtatga 3311
Query: 3196 taaaattggattcaaccaaaagaatatgaaaggttattctgattcgttcaggttttccac 3255
|||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct: 3312 taaaattggattcaaccaaaagaatatgaaagattattctgattcgttcaagttttccac 3371
Query: 3256 caagttgagcaatgccgtaaaaaacattaagtctgactttaagcaacttttaaccgattg 3315
|||||||| ||| ||||||||| ||||||||||| |||| |||| |||||||| ||
Sbjct: 3372 caagttgaacaacgccgtaaaagacattaagtctagctttgtgcaatttttaaccaatac 3431
Query: 3316 catttctgcaggaacttacagcccgaagaaagc------ggaacatggagttaaaaata 3368
||||| ||||| |||||||| || |||||| |||||||||||| |||||||
Sbjct: 3432 attttctacaggatcttacagcttgatgaaagcaaatgtggaacatggagtcaaaaata 3490
Score = 374 bits (965), Expect = e-104
Identities = 204/217 (94%)
Strand = Plus / Plus
Query: 817 tggggattggcttgatatttttttatcgtttgtatttaacaaagaacaatcttctgatct 876
||||||||||||||||||||||||||| ||||| ||||||||| |||||||||| |||||
Sbjct: 615 tggggattggcttgatatttttttatcatttgtgtttaacaaaaaacaatcttccgatct 674
Query: 877 caaagaaacgctcaatcaagagccaaggcctcatgttgaacaaaatgtagcctctacccc 936
||||||||||||||||||||||||||||||| || ||||||||||| ||||| ||||| |
Sbjct: 675 caaagaaacgctcaatcaagagccaaggcctgattttgaacaaaatttagccactaccac 734
Query: 937 cacccacatacaaggcttaccgcctgaagctagggatttgcttgatgaaaggggtgattt 996
|||| ||||||||||||||||||||||| |||| ||||||||||||||||||||| ||||
Sbjct: 735 caccgacatacaaggcttaccgcctgaatctagagatttgcttgatgaaaggggtaattt 794
Query: 997 ttctaaattcactcttggtgatatggaaatgttggat 1033
|||||||||||||||||||||||||||||||||||||
Sbjct: 795 ttctaaattcactcttggtgatatggaaatgttggat 831
Score = 269 bits (694), Expect = 3e-72
Identities = 153/176 (87%)
Strand = Plus / Plus
Query: 2782 ccctttgaaaaggtatgctaaagttgatgatctcagtaaggtagggctttcaagggagca 2841
|||||||| ||| |||| |||| |||| |||||||| ||||||||||||||||||||
Sbjct: 2907 ccctttgagaagaagtgctgcagttaatgacctcagtaaagtagggctttcaagggagca 2966
Query: 2842 agaattgaatgagaaaattggcaatctcaatcaggcagtgtcagaagctaaagcaggttc 2901
|||||||| | | ||||||| ||||||||||||| || |||||||||||| ||||||
Sbjct: 2967 agaattgactcgtagaattggcgatctcaatcaggcggtatcagaagctaaaacaggtta 3026
Query: 2902 ttttggcaacctagaacaaatgatggatggactcaaagattctacaaaaaagaatg 2957
||||| |||||||||||||| ||| |||| ||||||||||||||||||||||||||
Sbjct: 3027 ttttgacaacctagaacaaaagatagatgaactcaaagattctacaaaaaagaatg 3082
Score = 75 bits (193), Expect = 9e-14
Identities = 44/49 (90%)
Strand = Plus / Plus
Query: 767 gatgaatctttgaaagagaggcaagaagcacaaaacaatggagagcctg 815
|||||||||||||||| |||||||||||| |||| |||| ||||||||
Sbjct: 562 gatgaatctttgaaagcaaggcaagaagcagaaaaaaatgcagagcctg 610
Score = 49 bits (125), Expect = 7e-06
Identities = 26/28 (93%)
Strand = Plus / Plus
Query: 3373 tacaaaaagtggtttccagaaatcttaa 3400
||||||| |||||||||| |||||||||
Sbjct: 3492 tacaaaaggtggtttccaaaaatcttaa 3519
Score = 45 bits (116), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 2743 tagccctgaacccatttacgcta 2765
|||||||||||||||||||||||
Sbjct: 2850 tagccctgaacccatttacgcta 2872
Score = 32 bits (82), Expect = 8e-01
Identities = 17/19 (89%)
Strand = Plus / Plus
Query: 2988 aagtgcctattagtttgcc 3006
||||||||| ||||||| |
Sbjct: 3113 aagtgcctactagtttgtc 3131
Score = 31 bits (79), Expect = 2e+00
Identities = 16/17 (94%)
Strand = Plus / Plus
Query: 2721 tcagtaaggtagggcaa 2737
|||||||||||| ||||
Sbjct: 2402 tcagtaaggtagagcaa 2418
Score = 13 bits (35), Expect = 3e+05
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2972 tttgaag 2978
|||||||
Sbjct: 3084 tttgaag 3090 |