>AB090089|1|G1|22335789|BAC10435.1|Helicobacter_pylori_OK129|+|1..3519|cagA|-|CagA
Length = 3519
Score = 2502 bits (6456), Expect = 0.0
Identities = 1387/1518 (91%)
Strand = Plus / Plus
Query: 1034 tacaagttcaaccagttaccgattcacaataacgctctgtcttctatgctaatggggagt 1093
||||||||||| |||||| ||| |||||||||||||| |||||| ||||||||||| ||
Sbjct: 862 tacaagttcaatcagttattgatccacaataacgctctatcttctgtgctaatggggggt 921
Query: 1094 catagcagcatagaacctgaaaaagtttcattgttgtatggggataatggtggtcctgaa 1153
||||||| |||||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct: 922 catagcaacatagaacctgaaaaagtttcattattgtatggagataatggtggtcctgaa 981
Query: 1154 gctaggcatgattggaacgccaccgttggttataaaaaccaacaaggcaacaatgtggcc 1213
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 982 gctaggcatgattggaacgccaccgttggttataaaaaccaacaaggcagtaatgtggcc 1041
Query: 1214 acactcatcaatgcgcatcttaaaaacggcagcgggttagtcatagcgggtaatggaaat 1273
|||||||| |||||||||||| | ||||| || |||||||||||||||||||||| ||
Sbjct: 1042 acactcattaatgcgcatcttcataacggtagtgggttagtcatagcgggtaatgaggat 1101
Query: 1274 gggattaacaaccctagcttctatctctacaaaacagaccaactcacaggcttggaacaa 1333
|||||||| |||||||||||||||||||| ||| ||| ||||||||||| ||| |||||
Sbjct: 1102 gggattaaaaaccctagcttctatctctataaagaagatcaactcacaggtttgaaacaa 1161
Query: 1334 gcgttgagtcaagaagagatccaaaacaaagtggatttcatggaacttcttgcacaaaac 1393
|| ||||||||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct: 1162 gcaatgagtcaagaagagatccaaaacaaagtggatttcatggaatttcttgcaaaaaac 1221
Query: 1394 aacgctagattagataacttgagcgaggaagagaaagaaaagttccaaactgagattgga 1453
||||||| | ||||||||||||||||| ||||||||||||| ||||||||||||||||||
Sbjct: 1222 aacgctaaactagataacttgagcgagaaagagaaagaaaaattccaaactgagattgga 1281
Query: 1454 aatttccaaaaagaccctaaggcttatttagactccctagggaatgatcgcattgctttt 1513
|||||||||||||||| |||||||||||||||| | ||||||||||||| ||||||||||
Sbjct: 1282 aatttccaaaaagaccgtaaggcttatttagacgctctagggaatgatcacattgctttt 1341
Query: 1514 gtttctaaaaaagacc-aaaagcatttagctttggttactgagtttggtaatggggaatt 1572
|||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 1342 gtttctaaaaaagacccaaaa-catttagctttggttactgagtttggtaatggggaatt 1400
Query: 1573 gagctatactctcaaagattatgggaaaaaacaagatagagctttagatagggagacaaa 1632
||||||||| |||||||||||||||||||||||||||| |||||||||| ||||||||||
Sbjct: 1401 gagctataccctcaaagattatgggaaaaaacaagataaagctttagatggggagacaaa 1460
Query: 1633 aaccactcttcaaggtaacctaaagcatgatggcgtgatgtttgtcaattattccaattt 1692
||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||
Sbjct: 1461 aaccactcttcaaggtagcctaaaatatgatggcgtgatgtttgtcaattattccaattt 1520
Query: 1693 caaatacaccaacgcctccaagagtcctgatgagggtataggcgctacgaatggcgtttc 1752
|||||||||||||||||||||||||||| || ||||| |||| |||||||||||||||||
Sbjct: 1521 caaatacaccaacgcctccaagagtcctaataagggtttaggtgctacgaatggcgtttc 1580
Query: 1753 ccatttggaagcaaattttagcaaggtggctgtctttaatttgcctgatttaaatggtct 1812
||||||||||||||||||||||||||| |||||||||||||||||| |||||||| |||
Sbjct: 1581 ccatttggaagcaaattttagcaaggtagctgtctttaatttgcctaatttaaataatct 1640
Query: 1813 cgctatctctagttttgcaaggcggaatttagaggataaactgatcgctaaaggattgcc 1872
||||||| ||| || | |||||| ||||||| |||||| || |||||||||||| |
Sbjct: 1641 cgctatcactaattatataaggcgagatttagaagataaattgtgggctaaaggattgtc 1700
Query: 1873 cccaaaagacgctaataagatcatcaaagactttttgaacagcaacaaggaattgcttga 1932
|||| |||| ||||||||| |||||||||||||||||||||||||||||| |||| |||
Sbjct: 1701 cccacaagaagctaataagctcatcaaagactttttgaacagcaacaagggattggttgg 1760
Query: 1933 aaaagctttagacttcaataaagctgtagctgaagctaaaaatacaggcaattatgacgg 1992
||||| || | ||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct: 1761 aaaagtttcaaacttcaataaagctgtagctgaagctaaaaacacaggcaattatgatga 1820
Query: 1993 agtgaaaaaagctcaaaaagatcttgaaaaatctataaggaaacgagagcgtttagagca 2052
||||||||||||||| |||||||||||||||||| ||||||||||||||| ||||||| |
Sbjct: 1821 agtgaaaaaagctcagaaagatcttgaaaaatctctaaggaaacgagagcatttagagaa 1880
Query: 2053 agaaataacgaaaaaatttgagaacaagagcggcaacaaaaataaaatggaagcgaaagt 2112
|||| || |||||||||| |||| || | || ||||||||||| ||||||||| ||||
Sbjct: 1881 agaagtagcgaaaaaattggagagcagaaacgacaacaaaaatagaatggaagcaaaagc 1940
Query: 2113 tcaagctaacagccaaaaagatgggatttttaagcttatcaatgaagaggctcataagga 2172
|||||||||||||||||||||| ||||||| ||||||||| |||||||| ||||||
Sbjct: 1941 tcaagctaacagccaaaaagataagatttttgcacttatcaatcaagaggctagtaagga 2000
Query: 2173 agcaagaatcgccgcttacgctcagaatcttaaaggcatcaggagggaattgtttgataa 2232
||||||| ||||||| || || ||||||||||||||||||||| ||||||| ||||||
Sbjct: 2001 agcaagagcggccgctttcgatccgaatcttaaaggcatcaggagcgaattgtctgataa 2060
Query: 2233 agttaaaaatctcaacaagaatttgaaagactttgataaatcttttgatgcgctcaaaag 2292
| || ||||| |||||||||||||||||||||||| ||||||||||| | |||||||
Sbjct: 2061 acttgaaaatatcaacaagaatttgaaagactttggcaaatcttttgacgaactcaaaaa 2120
Query: 2293 tggcaaaaataaggatttcagcaaggcagaagaaacgctaaaagcccttgaaag-ctcgg 2351
|||||||||||| ||||||||||||| |||||||||||||||||||||| |||| |||||
Sbjct: 2121 tggcaaaaataatgatttcagcaaggtagaagaaacgctaaaagccctt-aaagactcgg 2179
Query: 2352 tgaaagatttgggtatcaatccagaatggatttcaaaagttgaaaaccttaatgcagctt 2411
|||||||||| || |||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 2180 tgaaagatttaggcatcaatccagaatggatttcaaaaattgaaaaccttaatgcagctt 2239
Query: 2412 tgaatgaattcaaaaatggcaaaaataaggatttcagcaaggtaacacaagcaaaaagcg 2471
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2240 tgaatgatttcaaaaatggcaaaaataaggatttcagcaaggtaacacaagcaaaaagcg 2299
Query: 2472 accttgaaaattccattaaggatgtgctcatcaatcaagagataacggataaagttgaca 2531
|||||||||||||||||||||||||| |||| |||||| |||||||||||||||||||||
Sbjct: 2300 accttgaaaattccattaaggatgtgatcattaatcaaaagataacggataaagttgaca 2359
Query: 2532 atctcaatcaggctgtat 2549
||||||||||||||||||
Sbjct: 2360 atctcaatcaggctgtat 2377
Score = 865 bits (2233), Expect = e-251
Identities = 469/504 (93%)
Strand = Plus / Plus
Query: 70 caacaatttatcaataatcttcaagtggcttttattaaacttgatagtgctgtcgcttca 129
|||| ||||||||||||||||||||| |||||||||||| |||||| ||||||||||||
Sbjct: 58 caacgatttatcaataatcttcaagtagcttttattaaagttgataacgctgtcgcttca 117
Query: 130 tttgatcccgatcaaaaaccaatcgttgataagaacgatagggataacaggcaagctttt 189
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 118 tttgatcccgatcaaaaaccaatcgttgataagaatgatagggataacaggcaagctttt 177
Query: 190 aatgtaatctcgcaattaagggaagaatacgccaataaagcgatcaaaaatcccaccaaa 249
| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 178 gagaaaatctcgcaactaagggaagaatacgccaataaagcgatcaaaaatcccaccaaa 237
Query: 250 aagaatcagtatttttcagactttatcgataaaagcaatgatttgatcaacaaaaacgat 309
||||||||||||||||||||||||||| |||| ||||||||||||||||||||| || ||
Sbjct: 238 aagaatcagtatttttcagactttatcaataagagcaatgatttgatcaacaaagacaat 297
Query: 310 ctcattgatacagattcttccacaaagagctttgaaaaatttggggctcagcgttaccaa 369
||||||| | |||||||||| | |||||||| |||||||||| |||||||||||||
Sbjct: 298 ctcattgctgtagattcttccgtagagagctttcggaaatttggggatcagcgttaccaa 357
Query: 370 atttttatgaattgggtgtcccatcaaaaagatccgtctaaaatcaacacccaaaaaatc 429
||||||| || ||||||||||| |||||||||||| |||||||||||||||||| |||||
Sbjct: 358 atttttacgagttgggtgtcccttcaaaaagatccttctaaaatcaacacccaacaaatc 417
Query: 430 cgagattttatggaaaatatcatacaaccccctatctctgatgataaagaaaaagcggag 489
||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct: 418 cgagattttatggaaaatatcatacaaccccctatctctgatgataaggagaaagcggag 477
Query: 490 tttttgaggtctgccaaacaatcttttgcaggaattatcatagggaaccaaacccgatcg 549
|||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||
Sbjct: 478 tttttgaggtctgccaaacaatcttttgcaggaattatcataggaaaccaaatccgatcg 537
Query: 550 gatgaaaaattcatgggcgttttt 573
|||||||||||||||||||| |||
Sbjct: 538 gatgaaaaattcatgggcgtgttt 561
Score = 491 bits (1267), Expect = e-139
Identities = 262/277 (95%)
Strand = Plus / Plus
Query: 3013 gcaagcgaaattggacaattacgctactaacagccacacacgcattaatagcaatgtcaa 3072
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 3129 gcaagcgaaattggacaattacgctactaacagccacacacgcattaatagcaatgtcca 3188
Query: 3073 aaatggaacaatcaatgaaaaagcgatcggcatgctaacgcaaaaaaaccctgagtggct 3132
| ||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 3189 acatggagcaatcaatgaaaaagcgactggcatgctaacgcaaaaaaaccctgagtggct 3248
Query: 3133 caagcttgtgaatgataagatagttgcgcataatgtgggaagcgctcctttgtcaggtta 3192
|||||| |||||||||||||||||||| ||||||||||||||| ||| |||||||| ||
Sbjct: 3249 caagctcgtgaatgataagatagttgcacataatgtgggaagcactcatttgtcagagta 3308
Query: 3193 tgataaaattggattcaaccaaaagaatatgaaaggttattctgattcgttcaggttttc 3252
||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct: 3309 tgataaaattggattcaaccaaaagaatatgaaagattattctgattcgttcaagttttc 3368
Query: 3253 caccaagttgagcaatgccgtaaaaaacattaagtct 3289
||||||||||| ||||||||||||| |||||||||||
Sbjct: 3369 caccaagttgaacaatgccgtaaaagacattaagtct 3405
Score = 368 bits (950), Expect = e-102
Identities = 201/217 (93%)
Strand = Plus / Plus
Query: 817 tggggattggcttgatatttttttatcgtttgtatttaacaaagaacaatcttctgatct 876
||||||||||||||||||||||||||| ||||| ||||||||| |||||||||| |||||
Sbjct: 615 tggggattggcttgatatttttttatcatttgtgtttaacaaaaaacaatcttccgatct 674
Query: 877 caaagaaacgctcaatcaagagccaaggcctcatgttgaacaaaatgtagcctctacccc 936
||||||||||||||||||||||||||||||| || ||||||||||| |||| ||||| |
Sbjct: 675 caaagaaacgctcaatcaagagccaaggcctgattttgaacaaaatttagctactaccac 734
Query: 937 cacccacatacaaggcttaccgcctgaagctagggatttgcttgatgaaaggggtgattt 996
|||| |||||||||||||||||||||||||||| ||||||||||||||||||||| ||||
Sbjct: 735 caccgacatacaaggcttaccgcctgaagctagagatttgcttgatgaaaggggtaattt 794
Query: 997 ttctaaattcactcttggtgatatggaaatgttggat 1033
|| ||||||||||||||||||| |||| |||||||||
Sbjct: 795 ttttaaattcactcttggtgatgtggagatgttggat 831
Score = 267 bits (688), Expect = 2e-71
Identities = 152/176 (86%)
Strand = Plus / Plus
Query: 2782 ccctttgaaaaggtatgctaaagttgatgatctcagtaaggtagggctttcaagggagca 2841
|||||||| ||| |||| |||| ||||||||||||| ||||||||||||||||| ||
Sbjct: 2907 ccctttgagaagaagtgctgcagttaatgatctcagtaaagtagggctttcaagggaaca 2966
Query: 2842 agaattgaatgagaaaattggcaatctcaatcaggcagtgtcagaagctaaagcaggttc 2901
|||||||| | | ||||||| ||||||||||||| || |||||||||||| |||||
Sbjct: 2967 agaattgactcgtagaattggcgatctcaatcaggcggtatcagaagctaaaacaggtca 3026
Query: 2902 ttttggcaacctagaacaaatgatggatggactcaaagattctacaaaaaagaatg 2957
|||||||||||||||||||| ||| |||| ||||||||||||||| ||||||||||
Sbjct: 3027 ttttggcaacctagaacaaaagatagatgaactcaaagattctacgaaaaagaatg 3082
Score = 75 bits (193), Expect = 9e-14
Identities = 44/49 (90%)
Strand = Plus / Plus
Query: 767 gatgaatctttgaaagagaggcaagaagcacaaaacaatggagagcctg 815
|||||||||||||||| |||||||||||| |||| |||| ||||||||
Sbjct: 562 gatgaatctttgaaagcaaggcaagaagcagaaaaaaatgcagagcctg 610
Score = 58 bits (149), Expect = 1e-08
Identities = 31/33 (94%)
Strand = Plus / Plus
Query: 2733 ggcaatcagatagccctgaacccatttacgcta 2765
||| ||||| |||||||||||||||||||||||
Sbjct: 2840 ggcgatcagctagccctgaacccatttacgcta 2872
Score = 49 bits (125), Expect = 7e-06
Identities = 26/28 (93%)
Strand = Plus / Plus
Query: 3373 tacaaaaagtggtttccagaaatcttaa 3400
||||||| |||||||||| |||||||||
Sbjct: 3492 tacaaaaggtggtttccaaaaatcttaa 3519
Score = 32 bits (83), Expect = 6e-01
Identities = 17/18 (94%)
Strand = Plus / Plus
Query: 3349 ggaacatggagttaaaaa 3366
|||||||||||| |||||
Sbjct: 3471 ggaacatggagtcaaaaa 3488
Score = 23 bits (60), Expect = 3e+02
Identities = 12/12 (100%)
Strand = Plus / Plus
Query: 2721 tcagtaaggtag 2732
||||||||||||
Sbjct: 2402 tcagtaaggtag 2413
Score = 18 bits (45), Expect = 2e+04
Identities = 9/9 (100%)
Strand = Plus / Plus
Query: 2988 aagtgccta 2996
|||||||||
Sbjct: 3113 aagtgccta 3121
Score = 13 bits (35), Expect = 3e+05
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2972 tttgaag 2978
|||||||
Sbjct: 3084 tttgaag 3090 |