>AB090086|1|G1|22335447|BAC10432.1|Helicobacter_pylori_OK107|+|1..3756|cagA|-|CagA
Length = 3756
Score = 2552 bits (6585), Expect = 0.0
Identities = 1417/1568 (90%)
Strand = Plus / Plus
Query: 1034 tacaagttcaaccagttaccgattcacaataacgctctgtcttctatgctaatggggagt 1093
|||||||||||||| ||| ||||||||||||||||||||||||| || |||||||||||
Sbjct: 868 tacaagttcaaccaattattgattcacaataacgctctgtcttctgtgttaatggggagt 927
Query: 1094 catagcagcatagaacctgaaaaagtttcattgttgtatggggataatggtggtcctgaa 1153
|||| ||||||||||||||||||||||||| |||||||||| |||||||| ||||||
Sbjct: 928 cataatggcatagaacctgaaaaagtttcattattgtatgggggcaatggtggccctgaa 987
Query: 1154 gctaggcatgattggaacgccaccgttggttataaaaaccaacaaggcaacaatgtggcc 1213
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 988 gctaggcatgattggaacgccaccgttggttataaaaaccaacaaggcgacaatgtggct 1047
Query: 1214 acactcatcaatgcgcatcttaaaaacggcagcgggttagtcatagcgggtaatggaaat 1273
|||||||| |||| |||| | ||||||||||| |||||||||||||| ||| || ||
Sbjct: 1048 acactcattaatgtgcatatgaaaaacggcagtgggttagtcatagcaggtggtgagaaa 1107
Query: 1274 gggattaacaaccctagcttctatctctacaaaacagaccaactcacaggcttggaacaa 1333
||| ||||||||||||| || |||||||||||| |||||| |||||||||||| |||||
Sbjct: 1108 ggggttaacaaccctagtttttatctctacaaagaagaccagctcacaggcttgaaacaa 1167
Query: 1334 gcgttgagtcaagaagagatccaaaacaaagtggatttcatggaacttcttgcacaaaac 1393
|| ||||| |||||||||||| |||||||||| |||||||||||| ||||||||||||||
Sbjct: 1168 gcattgagccaagaagagatcaaaaacaaagtagatttcatggaatttcttgcacaaaac 1227
Query: 1394 aacgctagattagataacttgagcgaggaagagaaagaaaagttccaaactgagattgga 1453
|| |||| |||||||||||||||| || ||||||||||||| ||||||| |||||||| |
Sbjct: 1228 aatgctaaattagataacttgagcaagaaagagaaagaaaaattccaaaatgagattgaa 1287
Query: 1454 aatttccaaaaagaccctaaggcttatttagactccctagggaatgatcgcattgctttt 1513
|||| ||||||||| ||||||||||||||||| ||||||||||||||| ||||||||||
Sbjct: 1288 gattttcaaaaagactctaaggcttatttagacgccctagggaatgatcacattgctttt 1347
Query: 1514 gtttctaaaaaagaccaaaagcatttagctttggttactgagtttggtaatggggaattg 1573
||||||||||||||| |||| ||||||||||| ||| |||||||||||||||||||||||
Sbjct: 1348 gtttctaaaaaagacaaaaaacatttagctttagttgctgagtttggtaatggggaattg 1407
Query: 1574 agctatactctcaaagattatgggaaaaaacaagatagagctttagatagggagacaaaa 1633
||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 1408 agctacactctcaaagattatgggaaaaaacaagataaagctttagatagggagacaaaa 1467
Query: 1634 accactcttcaaggtaacctaaagcatgatggcgtgatgtttgtcaattattccaatttc 1693
||||||||||||||||||||||| |||||||||||||||||||| |||||||| ||||||
Sbjct: 1468 accactcttcaaggtaacctaaaacatgatggcgtgatgtttgttaattattctaatttc 1527
Query: 1694 aaatacaccaacgcctccaagagtcctgatgagggtataggcgctacgaatggc-gtttc 1752
|||||||||||||||||||||||||||||| ||||| | || |||||||||||| |||||
Sbjct: 1528 aaatacaccaacgcctccaagagtcctgataagggtgtgggtgctacgaatggctgtttc 1587
Query: 1753 ccatttggaagcaaattttagcaaggtggctgtctttaatttgcctgatttaaatggtct 1812
|| ||||||||||||| |||| ||||| |||||||||||||||||| |||||||| |||
Sbjct: 1588 cc-tttggaagcaaatcttagtaaggtagctgtctttaatttgcctaatttaaataatct 1646
Query: 1813 cgctatctctagttttgcaaggcggaatttagaggataaactgatcgctaaaggattgcc 1872
||||||| |||||| | |||||| | ||||| ||||||||| |||||||||||| |
Sbjct: 1647 cgctatcactagttatataaggcgagacttagaagataaactgtgggctaaaggattgtc 1706
Query: 1873 cccaaaagacgctaataagatcatcaaagactttttgaacagcaacaaggaattgcttga 1932
|||| |||| | ||||||| |||||||||||||||||||||||||||| |||||| ||||
Sbjct: 1707 cccacaagaagttaataagctcatcaaagactttttgaacagcaacaaagaattggttga 1766
Query: 1933 aaaagctttagacttcaataaagctgtagctgaagctaaaaatacaggcaattatgacgg 1992
|||||||||| ||||||||||| ||||||||||||||||||| ||||||||||||||||
Sbjct: 1767 aaaagctttaaacttcaataaaactgtagctgaagctaaaaacacaggcaattatgacga 1826
Query: 1993 agtgaaaaaagctcaaaaagatcttgaaaaatctataaggaaacgagagcgtttagagca 2052
||||||||||||||| |||||||||||||||||| ||||||||||||||| ||||||| |
Sbjct: 1827 agtgaaaaaagctcagaaagatcttgaaaaatctctaaggaaacgagagcatttagagaa 1886
Query: 2053 agaaataacgaaaaaatttgagaacaagagcggcaacaaaaataaaatggaagcgaaagt 2112
|||| ||||||||||||| |||| || |||| |||||||||| ||||||||| ||||
Sbjct: 1887 agaagtaacgaaaaaattggagagaaaaagcgataacaaaaatagaatggaagcaaaagc 1946
Query: 2113 tcaagctaacagccaaaaagatgggatttttaagcttatcaatgaagaggctcataagga 2172
|||||||||||||||||||||| ||||||| ||||||||||||||||| ||||||
Sbjct: 1947 tcaagctaacagccaaaaagataagatttttgcaattatcaatgaagaggctggtaagga 2006
Query: 2173 agcaagaatcgccgcttacgctcagaatcttaaaggcatcaggagggaattgtttgataa 2232
||||||| | ||||||| || ||||||||||||||||||||| | |||||||| ||||||
Sbjct: 2007 agcaagagtagccgcttgcgttcagaatcttaaaggcatcagaatggaattgtctgataa 2066
Query: 2233 agttaaaaatctcaacaagaatttgaaagactttgataaatcttttgatgcgctcaaaag 2292
|| |||| ||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 2067 gcttgaaaacatcaacaagaatttgaaagactttgataaatcttttgatgaattcaaaaa 2126
Query: 2293 tggcaaaaataaggatttcagcaaggcagaagaaacgctaaaagcccttgaaag-ctcgg 2351
||||||||||||||||||||||||| ||||||||||||||||||||||| |||| |||||
Sbjct: 2127 tggcaaaaataaggatttcagcaagacagaagaaacgctaaaagccctt-aaagactcgg 2185
Query: 2352 tgaaagatttgggtatcaatccagaatggatttcaaaagttgaaaaccttaatgcagctt 2411
|||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 2186 tgaaagatttaggtatcaatccagaatggatttcaaaagttgaaaaccttaatacagctt 2245
Query: 2412 tgaatgaattcaaaaatggcaaaaataaggatttcagcaaggtaacacaagcaaaaagcg 2471
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 2246 tgaatgaattcaaaaatggcaaaaataaggatttcagcaaggtaacgcaagcaaaaagcg 2305
Query: 2472 accttgaaaattccattaaggatgtgctcatcaatcaagagataacggataaagttgaca 2531
||||||||||||||||||| |||||| ||||||||||| |||||||||||||||||||||
Sbjct: 2306 accttgaaaattccattaaagatgtgatcatcaatcaaaagataacggataaagttgaca 2365
Query: 2532 atctcaatcaggctgtattaagggctaaagcgataggcgattttagtggggtagagcaag 2591
|||||||||| ||||||| || ||||||| | || ||||| ||| ||||||||||||
Sbjct: 2366 atctcaatcaagctgtatcaatagctaaagaaacgggtgatttcagtagggtagagcaag 2425
Query: 2592 agctagcc 2599
|||||||
Sbjct: 2426 cgctagcc 2433
Score = 905 bits (2335), Expect = e-263
Identities = 493/540 (91%)
Strand = Plus / Plus
Query: 37 gatcaaacaccaagccaaacggcttttaatccacaacaatttatcaataatcttcaagtg 96
|||||||||||||||||||| |||||||| || || |||||||||||||||||||||||
Sbjct: 19 gatcaaacaccaagccaaacagcttttaacccgcagcaatttatcaataatcttcaagta 78
Query: 97 gcttttattaaacttgatagtgctgtcgcttcatttgatcccgatcaaaaaccaatcgtt 156
|||||| ||||| |||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct: 79 gcttttcttaaagttgataacgctgtcgcttcatttgatcctgatcaaaaaccaatcgtt 138
Query: 157 gataagaacgatagggataacaggcaagcttttaatgtaatctcgcaattaagggaagaa 216
|||||||| |||||||||||||||||||||||| | |||||||||| ||| ||| |||
Sbjct: 139 gataagaatgatagggataacaggcaagcttttgagaaaatctcgcaactaatggaggaa 198
Query: 217 tacgccaataaagcgatcaaaaatcccaccaaaaagaatcagtatttttcagactttatc 276
| ||| |||||||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct: 199 ttcgctaataaagcgatcaaaaatcctgccaaaaagaatcagtatttttcaaactttatc 258
Query: 277 gataaaagcaatgatttgatcaacaaaaacgatctcattgatacagattcttccacaaag 336
||| ||||||||||| ||||||||| || ||||||||||| || |||||||||||||
Sbjct: 259 agtaagagcaatgatttaatcaacaaagacagtctcattgatataggttcttccacaaag 318
Query: 337 agctttgaaaaatttggggctcagcgttaccaaatttttatgaattgggtgtcccatcaa 396
|||||| | ||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 agctttcagaaatttgggactcagcgttaccaaatttttatgaattgggtgtcccatcaa 378
Query: 397 aaagatccgtctaaaatcaacacccaaaaaatccgagattttatggaaaatatcatacaa 456
|||||||| ||||||||||||||||||| ||||||| ||||||||||||||||||||||
Sbjct: 379 aaagatccatctaaaatcaacacccaaagaatccgaagttttatggaaaatatcatacaa 438
Query: 457 ccccctatctctgatgataaagaaaaagcggagtttttgaggtctgccaaacaatctttt 516
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 ccccctatctctgatgataaagaaaaagcggagtttttgaggtctgccaaacaatctttt 498
Query: 517 gcaggaattatcatagggaaccaaacccgatcggatgaaaaattcatgggcgtttttgga 576
||||||||||||||||| ||||| | || ||| ||| |||||||||||||||| |||| |
Sbjct: 499 gcaggaattatcataggaaaccagatccaatcagatcaaaaattcatgggcgtgtttgaa 558
Score = 506 bits (1307), Expect = e-143
Identities = 272/295 (92%)
Strand = Plus / Plus
Query: 3016 agcgaaattggacaattacgctactaacagccacacacgcattaatagcaatgtcaaaaa 3075
||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 3363 agcgaaattggacgattatgctactaacagccacacacgcattaatagcaatgtcaaaaa 3422
Query: 3076 tggaacaatcaatgaaaaagcgatcggcatgctaacgcaaaaaaaccctgagtggctcaa 3135
|||| |||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct: 3423 tggagcaatcaatgaaaaagcgactggtatgctaacgcaaaaaaaccctgagtggctcaa 3482
Query: 3136 gcttgtgaatgataagatagttgcgcataatgtgggaagcgctcctttgtcaggttatga 3195
||| ||||||||||||||||||||||||||||||||||||||| ||||||||| |||||
Sbjct: 3483 gctcgtgaatgataagatagttgcgcataatgtgggaagcgcttctttgtcagagtatga 3542
Query: 3196 taaaattggattcaaccaaaagaatatgaaaggttattctgattcgttcaggttttccac 3255
||||||||| |||||||| ||||||||||||| ||||||||||||||||| |||||||||
Sbjct: 3543 taaaattggcttcaaccagaagaatatgaaagattattctgattcgttcaagttttccac 3602
Query: 3256 caagttgagcaatgccgtaaaaaacattaagtctgactttaagcaacttttaacc 3310
| |||||| |||||| ||||| |||||||||||| |||| |||| ||||||||
Sbjct: 3603 cgagttgaacaatgctataaaagacattaagtctggctttgtgcaatttttaacc 3657
Score = 374 bits (965), Expect = e-104
Identities = 210/241 (87%)
Strand = Plus / Plus
Query: 2766 atctcggcggatcttcccctttgaaaaggtatgctaaagttgatgatctcagtaaggtag 2825
||||||||||| ||| ||||||||||| | ||| |||||||| |||||||||||||||||
Sbjct: 3122 atctcggcggacctttccctttgaaaaagcatgataaagttggtgatctcagtaaggtag 3181
Query: 2826 ggctttcaagggagcaagaattgaatgagaaaattggcaatctcaatcaggcagtgtcag 2885
||||||||||||||||||||||||| | || |||| ||||||||||||||| || ||||
Sbjct: 3182 ggctttcaagggagcaagaattgaaacaaaagattgacaatctcaatcaggcggtatcag 3241
Query: 2886 aagctaaagcaggttcttttggcaacctagaacaaatgatggatggactcaaagattcta 2945
|||||||| ||||| ||||| ||||||||| |||||||| || |||||||||||||
Sbjct: 3242 aagctaaaacaggtcattttgacaacctagatcaaatgatagacaagctcaaagattcta 3301
Query: 2946 caaaaaagaatgttgtgaatctatggtttgaaggtgcaagaaaagtgcctattagtttgc 3005
|||||||||||||| ||||||||| ||||| |||||| ||||||||||| |||||||
Sbjct: 3302 caaaaaagaatgttatgaatctatatgttgaaagtgcaaaaaaagtgcctactagtttgt 3361
Query: 3006 c 3006
|
Sbjct: 3362 c 3362
Score = 352 bits (910), Expect = 2e-97
Identities = 198/221 (90%)
Strand = Plus / Plus
Query: 813 ctgttggggattggcttgatatttttttatcgtttgtatttaacaaagaacaatcttctg 872
||| ||||||||||||||||||||||||||| ||||| ||||||||| |||||||||| |
Sbjct: 617 ctggtggggattggcttgatatttttttatcatttgtgtttaacaaaaaacaatcttccg 676
Query: 873 atctcaaagaaacgctcaatcaagagccaaggcctcatgttgaacaaaatgtagcctcta 932
|||| |||||||| || |||||||| ||| |||||||| ||| | || ||||| |||
Sbjct: 677 atcttaaagaaacactaaatcaagaaccagttcctcatgtccaaccagatatagccacta 736
Query: 933 cccccacccacatacaaggcttaccgcctgaagctagggatttgcttgatgaaaggggtg 992
|| |||| |||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 737 ccaccactgacatacaaagcttaccgcctgaagctagggatttgcttgatgaaaggggta 796
Query: 993 atttttctaaattcactcttggtgatatggaaatgttggat 1033
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 797 atttttctaaattcactcttggtgatatggaaatgttggat 837
Score = 173 bits (448), Expect = 2e-43
Identities = 96/106 (91%)
Strand = Plus / Plus
Query: 2660 gctacgattgatgatctcggcggatcttcccctttgaaaaggtatgctaaagttgatgat 2719
|||||||||||||||||||||||| ||| ||||||||||| | || ||||||||||||||
Sbjct: 3007 gctacgattgatgatctcggcggacctttccctttgaaaaagcatactaaagttgatgat 3066
Query: 2720 ctcagtaaggtagggcaatcagatagccctgaacccatttacgcta 2765
|||||||||||||||| |||| || || |||||||||||||||||
Sbjct: 3067 ctcagtaaggtagggctttcagctaaccatgaacccatttacgcta 3112
Score = 173 bits (448), Expect = 2e-43
Identities = 96/106 (91%)
Strand = Plus / Plus
Query: 2660 gctacgattgatgatctcggcggatcttcccctttgaaaaggtatgctaaagttgatgat 2719
|||||||||||||||||||||||| ||| ||||||||||| | || ||||||||||||||
Sbjct: 2905 gctacgattgatgatctcggcggacctttccctttgaaaaagcatactaaagttgatgat 2964
Query: 2720 ctcagtaaggtagggcaatcagatagccctgaacccatttacgcta 2765
|||||||||||||||| |||| || || |||||||||||||||||
Sbjct: 2965 ctcagtaaggtagggctttcagctaaccatgaacccatttacgcta 3010
Score = 119 bits (308), Expect = 4e-27
Identities = 63/68 (93%)
Strand = Plus / Plus
Query: 2766 atctcggcggatcttcccctttgaaaaggtatgctaaagttgatgatctcagtaaggtag 2825
||||||||||| ||| ||||||||||| | || |||||||||||||||||||||||||||
Sbjct: 3020 atctcggcggacctttccctttgaaaaagcatactaaagttgatgatctcagtaaggtag 3079
Query: 2826 ggctttca 2833
||||||||
Sbjct: 3080 ggctttca 3087
Score = 97 bits (249), Expect = 2e-20
Identities = 55/60 (92%)
Strand = Plus / Plus
Query: 2706 ctaaagttgatgatctcagtaaggtagggcaatcagatagccctgaacccatttacgcta 2765
|||||||||||||||||||||||||||||| |||| || || |||||||||||||||||
Sbjct: 2849 ctaaagttgatgatctcagtaaggtagggctttcagctaaccatgaacccatttacgcta 2908
Score = 72 bits (185), Expect = 7e-13
Identities = 40/43 (93%)
Strand = Plus / Plus
Query: 770 gaatctttgaaagagaggcaagaagcacaaaacaatggagagc 812
|||||||||||||| |||||||||||| |||| ||||||||||
Sbjct: 559 gaatctttgaaagaaaggcaagaagcagaaaaaaatggagagc 601
Score = 48 bits (123), Expect = 1e-05
Identities = 25/27 (93%)
Strand = Plus / Plus
Query: 2766 atctcggcggatcttcccctttgaaaa 2792
||||||||||| ||| |||||||||||
Sbjct: 2918 atctcggcggacctttccctttgaaaa 2944
Score = 37 bits (94), Expect = 3e-02
Identities = 20/22 (91%)
Strand = Plus / Plus
Query: 2635 tcaaaaaaatgaaagtttcaat 2656
||||||||||||| |||||||
Sbjct: 2475 tcaaaaaaatgaagatttcaat 2496
Score = 15 bits (40), Expect = 7e+04
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 2603 ctcaaaag 2610
||||||||
Sbjct: 2448 ctcaaaag 2455
Score = 6 bits (14), Expect = 6e+07
Identities = 3/3 (100%)
Strand = Plus / Plus
Query: 2657 tat 2659
|||
Sbjct: 2516 tat 2518 |