>AB090084|1|G1|22335438|BAC10430.1|Helicobacter_pylori_F92|+|1..3813|cagA|-|CagA
Length = 3813
Score = 2499 bits (6448), Expect = 0.0
Identities = 1376/1494 (92%)
Strand = Plus / Plus
Query: 1058 cacaataacgctctgtcttctatgctaatggggagtcatagcagcatagaacctgaaaaa 1117
|||||||||||| | |||||| ||||||||||||||||||||| ||||||||||||||||
Sbjct: 898 cacaataacgctttatcttctgtgctaatggggagtcatagcaacatagaacctgaaaaa 957
Query: 1118 gtttcattgttgtatggggataatggtggtcctgaagctaggcatgattggaacgccacc 1177
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 958 gtttcattattgtatggggataatggtggtcctgaagctaggcatgattggaacgccact 1017
Query: 1178 gttggttataaaaaccaacaaggcaacaatgtggccacactcatcaatgcgcatcttaaa 1237
|||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 1018 gttggttataaagaccaacaaggcaacaatgtggccacactcattaatgcgcatcttaat 1077
Query: 1238 aacggcagcgggttagtcatagcgggtaatggaaatgggattaacaaccctagcttctat 1297
||||| ||||||||| ||||||||||||||| |||||||||| |||||||||||||||
Sbjct: 1078 aacggtagcgggttaatcatagcgggtaatgaggatgggattaaaaaccctagcttctat 1137
Query: 1298 ctctacaaaacagaccaactcacaggcttggaacaagcgttgagtcaagaagagatccaa 1357
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 1138 ctctacaaaacagaccaactcacaggcttgaaacaagcgttgagtcaagaagagatccaa 1197
Query: 1358 aacaaagtggatttcatggaacttcttgcacaaaacaacgctagattagataacttgagc 1417
||||||||||||||||||||| |||||||| |||||||||||| |||||| |||||||||
Sbjct: 1198 aacaaagtggatttcatggaatttcttgcaaaaaacaacgctaaattagacaacttgagc 1257
Query: 1418 gaggaagagaaagaaaagttccaaactgagattggaaatttccaaaaagaccctaaggct 1477
||| ||||||||||||| |||||||||||||||| |||||| |||||||||| |||||||
Sbjct: 1258 gagaaagagaaagaaaaattccaaactgagattgaaaattttcaaaaagaccgtaaggct 1317
Query: 1478 tatttagactccctagggaatgatcgcattgcttttgtttctaaaaaagacc-aaaagca 1536
||||||||| | ||||||||||||| |||||||||||||||||||||||||| |||| ||
Sbjct: 1318 tatttagacgctctagggaatgatcacattgcttttgtttctaaaaaagacccaaaa-ca 1376
Query: 1537 tttagctttggttactgagtttggtaatggggaattgagctatactctcaaagattatgg 1596
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 1377 tttagctttggttactgagtttggtaatggggaagtgagctatactctcaaagattatgg 1436
Query: 1597 gaaaaaacaagatagagctttagatagggagacaaaaaccactcttcaaggtaacctaaa 1656
|||||||||||||| |||||||||| ||||||||||||||||||||||||||| ||||||
Sbjct: 1437 gaaaaaacaagataaagctttagatggggagacaaaaaccactcttcaaggtagcctaaa 1496
Query: 1657 gcatgatggcgtgatgtttgtcaattattccaatttcaaatacaccaacgcctccaagag 1716
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 1497 atatgatggcgtgatgtttgttgattattccaatttcaaatacaccaacgcctccaagag 1556
Query: 1717 tcctgatgagggtataggcgctacgaatggcgtttcccatttggaagcaaattttagcaa 1776
|||| || ||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1557 tcctaataagggtttaggcgctacgaatggcgtttcccatttggaagcaaattttagcaa 1616
Query: 1777 ggtggctgtctttaatttgcctgatttaaatggtctcgctatctctagttttgcaaggcg 1836
||| |||||||||||||||||| |||||||| |||||||||| ||| || | ||||||
Sbjct: 1617 ggtagctgtctttaatttgcctaatttaaataatctcgctatcactaattatataaggcg 1676
Query: 1837 gaatttagaggataaactgatcgctaaaggattgcccccaaaagacgctaataagatcat 1896
||||||| |||||| || | |||||||||||| ||||| |||| ||||||||| ||||
Sbjct: 1677 agatttagaagataaattgttggctaaaggattgtccccacaagaagctaataagctcat 1736
Query: 1897 caaagactttttgaacagcaacaaggaattgcttgaaaaagctttagacttcaataaagc 1956
|||||||||||| ||||||||||| |||||||||| ||||| || | |||||||||||||
Sbjct: 1737 caaagactttttaaacagcaacaaagaattgcttggaaaagtttcaaacttcaataaagc 1796
Query: 1957 tgtagctgaagctaaaaatacaggcaattatgacggagtgaaaaaagctcaaaaagatct 2016
|||||||||||||||||| |||||||||||||| | ||||||||||||||| ||||||||
Sbjct: 1797 tgtagctgaagctaaaaacacaggcaattatgatgaagtgaaaaaagctcagaaagatct 1856
Query: 2017 tgaaaaatctataaggaaacgagagcgtttagagcaagaaataacgaaaaaatttgagaa 2076
|||||||||| ||||||||||||||| ||||||| ||||| || |||||||||| ||||
Sbjct: 1857 tgaaaaatctctaaggaaacgagagcatttagagaaagaagtagcgaaaaaattggagag 1916
Query: 2077 caagagcggcaacaaaaataaaatggaagcgaaagttcaagctaacagccaaaaagatgg 2136
|| | || ||||||||||| ||||||||| |||| ||||||||||||||||||||||
Sbjct: 1917 cagaaacgacaacaaaaatagaatggaagcaaaagctcaagctaacagccaaaaagataa 1976
Query: 2137 gatttttaagcttatcaatgaagaggctcataaggaagcaagaatcgccgcttacgctca 2196
||||||| ||||||||| |||||||| ||||||||||||| ||||||| || ||
Sbjct: 1977 gatttttgcacttatcaataaagaggctagtaaggaagcaagagcagccgctttcgatcc 2036
Query: 2197 gaatcttaaaggcatcaggagggaattgtttgataaagttaaaaatctcaacaagaattt 2256
||||||||||||||||||||| ||||||| ||||||| || ||||| |||||||||||||
Sbjct: 2037 gaatcttaaaggcatcaggagcgaattgtctgataaacttgaaaatatcaacaagaattt 2096
Query: 2257 gaaagactttgataaatcttttgatgcgctcaaaagtggcaaaaataaggatttcagcaa 2316
||||||||||| ||||||||||||| ||||||| |||||||||||| |||||||||||
Sbjct: 2097 gaaagactttggcaaatcttttgatgaactcaaaaatggcaaaaataatgatttcagcaa 2156
Query: 2317 ggcagaagaaacgctaaaagcccttgaaag-ctcggtgaaagatttgggtatcaatccag 2375
||||||||||||||||||||||||| |||| ||||||||||||||| || ||||||||||
Sbjct: 2157 ggcagaagaaacgctaaaagccctt-aaagactcggtgaaagatttaggcatcaatccag 2215
Query: 2376 aatggatttcaaaagttgaaaaccttaatgcagctttgaatgaattcaaaaatggcaaaa 2435
|||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 2216 aatggatttcaaaaattgaaaaccttaatgcagctttgaatgatttcaaaaatggcaaaa 2275
Query: 2436 ataaggatttcagcaaggtaacacaagcaaaaagcgaccttgaaaattccattaaggatg 2495
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2276 ataaggatttcagcaaggtaacacaagcaaaaagcgaccttgaaaattccattaaggatg 2335
Query: 2496 tgctcatcaatcaagagataacggataaagttgacaatctcaatcaggctgtat 2549
|| |||| |||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 2336 tgatcattaatcaaaagataacggataaagttgacaatctcaatcaggctgtat 2389
Score = 969 bits (2502), Expect = e-283
Identities = 536/586 (91%)
Strand = Plus / Plus
Query: 1 atggctaacgaaaccatcaatcaaacaaaaaaaccagatcaaacaccaagccaaacggct 60
||| |||||||||| || ||||||||| || ||||||||||||||||| |||||||| |
Sbjct: 1 atgactaacgaaactattgatcaaacaacaacaccagatcaaacaccaaaccaaacggat 60
Query: 61 tttaatccacaacaatttatcaataatcttcaagtggcttttattaaacttgatagtgct 120
||| ||| |||| |||||||||||||||||||||||||||||| ||| |||||| |||
Sbjct: 61 tttgttccgcaacgatttatcaataatcttcaagtggcttttatcaaagttgataacgct 120
Query: 121 gtcgcttcatttgatcccgatcaaaaaccaatcgttgataagaacgatagggataacagg 180
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 121 gtcgcttcatttgatcccgatcaaaaaccaatcgttgataagaatgatagggataacagg 180
Query: 181 caagcttttaatgtaatctcgcaattaagggaagaatacgccaataaagcgatcaaaaat 240
||||||||| | |||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 181 caagcttttgagaaaatctcgcaactaagggaagaatacgccaataaagcgatcaaaaat 240
Query: 241 cccaccaaaaagaatcagtatttttcagactttatcgataaaagcaatgatttgatcaac 300
|| |||||||||||||||||||||||||||||||| |||| ||||||||||| ||||||
Sbjct: 241 cctgccaaaaagaatcagtatttttcagactttatcaataagagcaatgatttaatcaac 300
Query: 301 aaaaacgatctcattgatacagattcttccacaaagagctttgaaaaatttggggctcag 360
||| || ||||||||| | |||||||||| | |||||||| |||||||||| ||||
Sbjct: 301 aaagacaatctcattgctgtagattcttccgtagagagctttcggaaatttggggatcag 360
Query: 361 cgttaccaaatttttatgaattgggtgtcccatcaaaaagatccgtctaaaatcaacacc 420
|||||||||||||||| || ||||||||||| ||||||||||||||||||||||||||||
Sbjct: 361 cgttaccaaatttttacgagttgggtgtcccttcaaaaagatccgtctaaaatcaacacc 420
Query: 421 caaaaaatccgagattttatggaaaatatcatacaaccccctatctctgatgataaagaa 480
||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 caacaaatccgaaattttatggaaaatatcatacaaccccctatctctgatgataaagaa 480
Query: 481 aaagcggagtttttgaggtctgccaaacaatcttttgcaggaattatcatagggaaccaa 540
||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct: 481 aaagcggagtttttgaggtctgccaaacaatcttttgcaggaattatcataggaaatcaa 540
Query: 541 acccgatcggatgaaaaattcatgggcgtttttggatgaatctttg 586
| |||||||||| |||||||||||||||| ||| ||||||||||||
Sbjct: 541 atccgatcggatcaaaaattcatgggcgtgttt-gatgaatctttg 585
Score = 549 bits (1417), Expect = e-156
Identities = 302/332 (91%)
Strand = Plus / Plus
Query: 3006 ctagttcgcaagcgaaattggacaattacgctactaacagccacacacgcattaatagca 3065
|||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 3416 ctagtttgcaagcgaaattggacaattacactactaacagccacacacgcattaatagca 3475
Query: 3066 atgtcaaaaatggaacaatcaatgaaaaagcgatcggcatgctaacgcaaaaaaaccctg 3125
||||| ||| ||||||||||||||||||||||| ||| ||||| || |||||||||||||
Sbjct: 3476 atgtccaaactggaacaatcaatgaaaaagcgaccggtatgctgacacaaaaaaaccctg 3535
Query: 3126 agtggctcaagcttgtgaatgataagatagttgcgcataatgtgggaagcgctcctttgt 3185
||||||||||||| |||||||||||||||||||| |||||||||||||| |||| |||||
Sbjct: 3536 agtggctcaagctcgtgaatgataagatagttgcacataatgtgggaagtgctcatttgt 3595
Query: 3186 caggttatgataaaattggattcaaccaaaagaatatgaaaggttattctgattcgttca 3245
||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 3596 cagagtatgataaaattggattcaaccaaaagaatatgaaagattattctgattcgttca 3655
Query: 3246 ggttttccaccaagttgagcaatgccgtaaaaaacattaagtctgactttaagcaacttt 3305
||||||||||||||||| ||||||||||||| ||||||||||| |||| |||| |||
Sbjct: 3656 agttttccaccaagttgaacaatgccgtaaaagacattaagtctagctttgtgcaatttt 3715
Query: 3306 taaccgattgcatttctgcaggaacttacagc 3337
||||| || ||||| ||||| ||||||||
Sbjct: 3716 taaccaatacattttctacaggagcttacagc 3747
Score = 410 bits (1058), Expect = e-114
Identities = 231/252 (92%)
Strand = Plus / Plus
Query: 785 aggcaagaagcacaaaacaatggagagcct---gttggggattggcttgatattttttta 841
|||||||||||| |||| |||| ||||||| | |||||||||||||||||||||||||
Sbjct: 592 aggcaagaagcagaaaaaaatgaagagcctactggtggggattggcttgatattttttta 651
Query: 842 tcgtttgtatttaacaaagaacaatcttctgatctcaaagaaacgctcaatcaagagcca 901
|| ||||| ||||||||| |||||||||| ||||||||||||||||||||||||||||||
Sbjct: 652 tcatttgtgtttaacaaaaaacaatcttccgatctcaaagaaacgctcaatcaagagcca 711
Query: 902 aggcctcatgttgaacaaaatgtagcctctacccccacccacatacaaggcttaccgcct 961
|||||| || ||||||||||| ||||| ||||| ||||| ||||||||||||||||||||
Sbjct: 712 aggcctgattttgaacaaaatttagccactaccaccaccgacatacaaggcttaccgcct 771
Query: 962 gaagctagggatttgcttgatgaaaggggtgatttttctaaattcactcttggtgatatg 1021
|||||||||||||||||||||||||||||| |||||| ||||||||||||||||||| ||
Sbjct: 772 gaagctagggatttgcttgatgaaaggggtaatttttttaaattcactcttggtgatgtg 831
Query: 1022 gaaatgttggat 1033
|| |||||||||
Sbjct: 832 gagatgttggat 843
Score = 267 bits (688), Expect = 2e-71
Identities = 152/176 (86%)
Strand = Plus / Plus
Query: 2782 ccctttgaaaaggtatgctaaagttgatgatctcagtaaggtagggctttcaagggagca 2841
|||||||| ||| |||| |||| ||||||||||||| ||||||||||||||||| ||
Sbjct: 3201 ccctttgagaagaagtgctgcagttaatgatctcagtaaagtagggctttcaagggaaca 3260
Query: 2842 agaattgaatgagaaaattggcaatctcaatcaggcagtgtcagaagctaaagcaggttc 2901
|||||||| | | ||||||| ||||||||||||| || |||||||||||| |||||
Sbjct: 3261 agaattgactcgtagaattggcgatctcaatcaggcggtatcagaagctaaaacaggtca 3320
Query: 2902 ttttggcaacctagaacaaatgatggatggactcaaagattctacaaaaaagaatg 2957
|||||||||||||||||||| ||| |||| ||||||||||||||| ||||||||||
Sbjct: 3321 ttttggcaacctagaacaaaagatagatgaactcaaagattctacgaaaaagaatg 3376
Score = 60 bits (156), Expect = 2e-09
Identities = 32/33 (97%)
Strand = Plus / Plus
Query: 2733 ggcaatcagatagccctgaacccatttacgcta 2765
||||||||| |||||||||||||||||||||||
Sbjct: 3134 ggcaatcagctagccctgaacccatttacgcta 3166
Score = 49 bits (125), Expect = 7e-06
Identities = 26/28 (93%)
Strand = Plus / Plus
Query: 3373 tacaaaaagtggtttccagaaatcttaa 3400
||||||| |||||||||| |||||||||
Sbjct: 3786 tacaaaaggtggtttccaaaaatcttaa 3813
Score = 40 bits (103), Expect = 3e-03
Identities = 21/22 (95%)
Strand = Plus / Plus
Query: 3347 gcggaacatggagttaaaaata 3368
|||||||||||||| |||||||
Sbjct: 3763 gcggaacatggagtcaaaaata 3784
Score = 21 bits (54), Expect = 1e+03
Identities = 11/11 (100%)
Strand = Plus / Plus
Query: 1034 tacaagttcaa 1044
|||||||||||
Sbjct: 874 tacaagttcaa 884
Score = 18 bits (45), Expect = 2e+04
Identities = 9/9 (100%)
Strand = Plus / Plus
Query: 2988 aagtgccta 2996
|||||||||
Sbjct: 3407 aagtgccta 3415
Score = 13 bits (35), Expect = 3e+05
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2972 tttgaag 2978
|||||||
Sbjct: 3378 tttgaag 3384 |