>AB090081|1|G1|22335425|BAC10427.1|Helicobacter_pylori_F55|+|1..3699|cagA|-|CagA
Length = 3699
Score = 1297 bits (3348), Expect = 0.0
Identities = 735/818 (90%)
Strand = Plus / Plus
Query: 1733 ggcgctacgaatggcgtttcccatttggaagcaaattttagcaaggtggctgtctttaat 1792
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 1576 ggcgctacgaatggcgtttcccatttggaagcaaattttagcaaggtagctgtctttaat 1635
Query: 1793 ttgcctgatttaaatggtctcgctatctctagttttgcaaggcggaatttagaggataaa 1852
|||||| |||||||| |||||||||| ||| || | |||||| ||||||| ||||||
Sbjct: 1636 ttgcctaatttaaataatctcgctatcactaattatataaggcgagatttagaagataaa 1695
Query: 1853 ctgatcgctaaaggattgcccccaaaagacgctaataagatcatcaaagactttttgaac 1912
|| |||||||||||| ||||| |||| ||||||||| ||||||||||||||||||||
Sbjct: 1696 ttgtgggctaaaggattgtccccacaagaagctaataagctcatcaaagactttttgaac 1755
Query: 1913 agcaacaaggaattgcttgaaaaagctttagacttcaataaagctgtagctgaagctaaa 1972
|||||||| |||||||||| ||||| || | ||||||||||||||||||||| | |||||
Sbjct: 1756 agcaacaaagaattgcttggaaaagtttcaaacttcaataaagctgtagctggatctaaa 1815
Query: 1973 aatacaggcaattatgacggagtgaaaaaagctcaaaaagatcttgaaaaatctataagg 2032
||||||||||||||||| | ||||||||||||||| |||||||||||||||||| |||||
Sbjct: 1816 aatacaggcaattatgatgaagtgaaaaaagctcagaaagatcttgaaaaatctctaagg 1875
Query: 2033 aaacgagagcgtttagagcaagaaataacgaaaaaatttgagaacaagagcggcaacaaa 2092
|||||||||| ||||||| ||||| || |||||||||| |||| || | || ||||||
Sbjct: 1876 aaacgagagcatttagagaaagaagtagcgaaaaaattggagagcagaaacgaaaacaaa 1935
Query: 2093 aataaaatggaagcgaaagttcaagctaacagccaaaaagatgggatttttaagcttatc 2152
|||| ||||||||| |||| |||||||||||||||||||||| ||||||| | | |||
Sbjct: 1936 aatagaatggaagcaaaagctcaagctaacagccaaaaagataagatttttgcgttgatc 1995
Query: 2153 aatgaagaggctcataaggaagcaagaatcgccgcttacgctcagaatcttaaaggcatc 2212
||| |||||||| ||||||||||||| ||||||| || || ||||||||||||| ||
Sbjct: 1996 aatcaagaggctagtaaggaagcaagagcggccgctttcgatccgaatcttaaaggcgtc 2055
Query: 2213 aggagggaattgtttgataaagttaaaaatctcaacaagaatttgaaagactttgataaa 2272
||||| ||||||| ||||||| || ||||| |||| ||||||||||||||||||| |||
Sbjct: 2056 aggagcgaattgtctgataaacttgaaaatatcaataagaatttgaaagactttggcaaa 2115
Query: 2273 tcttttgatgcgctcaaaagtggcaaaaataaggatttcagcaaggcagaagaaacgcta 2332
|||||||||| |||||| |||||||||||| |||||||||||||||||||||||||||
Sbjct: 2116 tcttttgatgatttcaaaaatggcaaaaataatgatttcagcaaggcagaagaaacgcta 2175
Query: 2333 aaagcccttgaaag-ctcggtgaaagatttgggtatcaatccagaatggatttcaaaagt 2391
||||||||| |||| ||||||||||||||| || |||||||||||||||||||||||| |
Sbjct: 2176 aaagccctt-aaagactcggtgaaagatttaggcatcaatccagaatggatttcaaaaat 2234
Query: 2392 tgaaaaccttaatgcagctttgaatgaattcaaaaatggcaaaaataaggatttcagcaa 2451
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 2235 tgaaaaccttaatgcagctttgaatgatttcaaaaatggcaaaaataaggatttcagcaa 2294
Query: 2452 ggtaacacaagcaaaaagcgaccttgaaaattccattaaggatgtgctcatcaatcaaga 2511
|||||||||||||||||||||||||||||||||||||||||||||| |||| |||||| |
Sbjct: 2295 ggtaacacaagcaaaaagcgaccttgaaaattccattaaggatgtgatcattaatcaaaa 2354
Query: 2512 gataacggataaagttgacaatctcaatcaggctgtat 2549
||||||||||||||||||||||||||||||||||||||
Sbjct: 2355 gataacggataaagttgacaatctcaatcaggctgtat 2392
Score = 1113 bits (2872), Expect = 0.0
Identities = 603/644 (94%)
Strand = Plus / Plus
Query: 1058 cacaataacgctctgtcttctatgctaatggggagtcatagcagcatagaacctgaaaaa 1117
||||||||||||||||||||| ||||||||||| ||||||| | ||||||||||||||||
Sbjct: 898 cacaataacgctctgtcttctgtgctaatggggggtcatagtaacatagaacctgaaaaa 957
Query: 1118 gtttcattgttgtatggggataatggtggtcctgaagctaggcatgattggaacgccacc 1177
||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 958 gtttcgttattgtatggggataatggtggtcctgaagctaggcatgattggaacgccacc 1017
Query: 1178 gttggttataaaaaccaacaaggcaacaatgtggccacactcatcaatgcgcatcttaaa 1237
||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct: 1018 gttggttataaaaaccaacaaggcagtaatgtggccacactcattaatgcgcatcttaat 1077
Query: 1238 aacggcagcgggttagtcatagcgggtaatggaaatgggattaacaaccctagcttctat 1297
|||||||| |||||||||||||||||||||| |||||||||| |||||||||||||||
Sbjct: 1078 aacggcagtgggttagtcatagcgggtaatgaggatgggattaaaaaccctagcttctat 1137
Query: 1298 ctctacaaaacagaccaactcacaggcttggaacaagcgttgagtcaagaagagatccaa 1357
||||| ||| ||| ||||||||||| ||| |||||||||||||||||||||||||||||
Sbjct: 1138 ctctataaagaagatcaactcacaggtttgaaacaagcgttgagtcaagaagagatccaa 1197
Query: 1358 aacaaagtggatttcatggaacttcttgcacaaaacaacgctagattagataacttgagc 1417
||||||||||||||||||||| |||||||| |||||||||||| ||||||||||||||||
Sbjct: 1198 aacaaagtggatttcatggaatttcttgcaaaaaacaacgctaaattagataacttgagc 1257
Query: 1418 gaggaagagaaagaaaagttccaaactgagattggaaatttccaaaaagaccctaaggct 1477
||| ||||||||||||| ||||||||||| |||||||||||||||||||||| |||||||
Sbjct: 1258 gagaaagagaaagaaaaattccaaactgaaattggaaatttccaaaaagaccgtaaggct 1317
Query: 1478 tatttagactccctagggaatgatcgcattgcttttgtttctaaaaaagacc-aaaagca 1536
||||| ||| | || |||||||||| |||||||||||||||||||||||||| |||| ||
Sbjct: 1318 tatttggacgctctggggaatgatcacattgcttttgtttctaaaaaagacccaaaa-ca 1376
Query: 1537 tttagctttggttactgagtttggtaatggggaattgagctatactctcaaagattatgg 1596
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 1377 tttagctttggttactgagtttggtaatggggaagtgagctatactctcaaagattatgg 1436
Query: 1597 gaaaaaacaagatagagctttagatagggagacaaaaaccactcttcaaggtaacctaaa 1656
|||||||||||||| |||||||||| ||||||||||||||||||||||||||| ||||||
Sbjct: 1437 gaaaaaacaagataaagctttagatggggagacaaaaaccactcttcaaggtagcctaaa 1496
Query: 1657 gcatgatggcgtgatgtttgtcaattattccaatttcaaataca 1700
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1497 atatgatggcgtgatgtttgtcaattattccaatttcaaataca 1540
Score = 950 bits (2451), Expect = e-277
Identities = 522/573 (91%)
Strand = Plus / Plus
Query: 1 atggctaacgaaaccatcaatcaaacaaaaaaaccagatcaaacaccaagccaaacggct 60
||| |||||||||| || ||||||||| || ||| ||||||||||||| |||||||| |
Sbjct: 1 atgactaacgaaactattgatcaaacaacaacaccggatcaaacaccaaaccaaacggat 60
Query: 61 tttaatccacaacaatttatcaataatcttcaagtggcttttattaaacttgatagtgct 120
||| ||| |||| ||||||||||||||||||||| |||||||||||| |||||| |||
Sbjct: 61 tttgttccgcaacgatttatcaataatcttcaagtagcttttattaaagttgataacgct 120
Query: 121 gtcgcttcatttgatcccgatcaaaaaccaatcgttgataagaacgatagggataacagg 180
||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| |||
Sbjct: 121 gtcgcttcatttgatcctgatcaaaaaccaatcgttgataagaatgatagggataatagg 180
Query: 181 caagcttttaatgtaatctcgcaattaagggaagaatacgccaataaagcgatcaaaaat 240
||||||||| | |||||||||| ||| |||||||||||||||||||||||||||||||
Sbjct: 181 caagcttttgagaaaatctcgcaactaatggaagaatacgccaataaagcgatcaaaaat 240
Query: 241 cccaccaaaaagaatcagtatttttcagactttatcgataaaagcaatgatttgatcaac 300
||||||||||||||||||||||||| |||||||||| |||| ||||||||||||||||||
Sbjct: 241 cccaccaaaaagaatcagtattttttagactttatcaataagagcaatgatttgatcaac 300
Query: 301 aaaaacgatctcattgatacagattcttccacaaagagctttgaaaaatttggggctcag 360
||| || ||||||||| | |||||||||| | |||||||| |||||||||| ||||
Sbjct: 301 aaagacaatctcattgctgtagattcttccgtagagagctttcggaaatttggggatcag 360
Query: 361 cgttaccaaatttttatgaattgggtgtcccatcaaaaagatccgtctaaaatcaacacc 420
|||||||||||||||| || ||||||||||| ||||||||||||||||||||||||||||
Sbjct: 361 cgttaccaaatttttacgagttgggtgtcccttcaaaaagatccgtctaaaatcaacacc 420
Query: 421 caaaaaatccgagattttatggaaaatatcatacaaccccctatctctgatgataaagaa 480
||| |||||||| ||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 421 caacaaatccgaaattttatggaaaatatcatacaaccccctatctctgatgataaggaa 480
Query: 481 aaagcggagtttttgaggtctgccaaacaatcttttgcaggaattatcatagggaaccaa 540
||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 481 aaagcagagtttttgaggtctgccaaacaatcttttgcaggaattatcatagggaatcaa 540
Query: 541 acccgatcggatgaaaaattcatgggcgttttt 573
| ||||||||||||||||||||||||||| |||
Sbjct: 541 atccgatcggatgaaaaattcatgggcgtgttt 573
Score = 573 bits (1478), Expect = e-163
Identities = 320/358 (89%)
Strand = Plus / Plus
Query: 3017 gcgaaattggacaattacgctactaacagccacacacgcattaatagcaatgtcaaaaat 3076
||||||||||||||||| |||||||||||||||||||||||||||||||||||| || ||
Sbjct: 3313 gcgaaattggacaattatgctactaacagccacacacgcattaatagcaatgtccaagat 3372
Query: 3077 ggaacaatcaatgaaaaagcgatcggcatgctaacgcaaaaaaaccctgagtggctcaag 3136
||| |||||||||||||||||| ||| ||||||||||||||||||||||||||||||||
Sbjct: 3373 ggagcaatcaatgaaaaagcgaccggtgtgctaacgcaaaaaaaccctgagtggctcaag 3432
Query: 3137 cttgtgaatgataagatagttgcgcataatgtgggaagcgctcctttgtcaggttatgat 3196
|| |||| ||||||||||||||||||||||||||||||||||||| |||||| |||||||
Sbjct: 3433 ctcgtgagtgataagatagttgcgcataatgtgggaagcgctcctctgtcagattatgat 3492
Query: 3197 aaaattggattcaaccaaaagaatatgaaaggttattctgattcgttcaggttttccacc 3256
||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct: 3493 aaaattggattcaaccaaaagaatatgaaagattattctgattcgttcaagttttccacc 3552
Query: 3257 aagttgagcaatgccgtaaaaaacattaagtctgactttaagcaacttttaaccgattgc 3316
||||||| ||||||||||||| ||| ||||||| |||| |||| |||||||| ||
Sbjct: 3553 aagttgaacaatgccgtaaaagacactaagtctagctttgtgcaatttttaaccaataca 3612
Query: 3317 atttctgcaggaacttacagcccgaagaaagc------ggaacatggagttaaaaata 3368
||||| ||||| |||||||| || |||||| |||||||||||| |||||||
Sbjct: 3613 ttttctacaggatcttacagcttgatgaaagcaaatgtggaacatggagtcaaaaata 3670
Score = 365 bits (942), Expect = e-101
Identities = 199/217 (92%)
Strand = Plus / Plus
Query: 817 tggggattggcttgatatttttttatcgtttgtatttaacaaagaacaatcttctgatct 876
||||||||||||||||||||||||||| ||||| ||||||||| |||||||||| |||||
Sbjct: 627 tggggattggcttgatatttttttatcatttgtgtttaacaaaaaacaatcttccgatct 686
Query: 877 caaagaaacgctcaatcaagagccaaggcctcatgttgaacaaaatgtagcctctacccc 936
||||||||||||||||||||||||||||||| || |||| |||||| ||||| ||||| |
Sbjct: 687 caaagaaacgctcaatcaagagccaaggcctgattttgagcaaaatatagccactaccac 746
Query: 937 cacccacatacaaggcttaccgcctgaagctagggatttgcttgatgaaaggggtgattt 996
|||| ||||||||||||||||||||||||||| ||||||||||||||||||||| ||||
Sbjct: 747 caccagcatacaaggcttaccgcctgaagctagagatttgcttgatgaaaggggtaattt 806
Query: 997 ttctaaattcactcttggtgatatggaaatgttggat 1033
|| ||||||||||||||||||| ||| |||||||||
Sbjct: 807 ttttaaattcactcttggtgatgcggagatgttggat 843
Score = 284 bits (734), Expect = 8e-77
Identities = 160/183 (87%)
Strand = Plus / Plus
Query: 2782 ccctttgaaaaggtatgctaaagttgatgatctcagtaaggtagggctttcaagggagca 2841
|||||||| ||| ||||||||||| |||||||||||| ||||||||||||||||| ||
Sbjct: 3087 ccctttgagaagaggtgctaaagttggtgatctcagtaaagtagggctttcaagggaaca 3146
Query: 2842 agaattgaatgagaaaattggcaatctcaatcaggcagtgtcagaagctaaagcaggttc 2901
|||||||| | | ||||||| ||||||||||||| || |||||||||||| ||||
Sbjct: 3147 agaattgactcgtagaattggcgatctcaatcaggcggtatcagaagctaaaataggtca 3206
Query: 2902 ttttggcaacctagaacaaatgatggatggactcaaagattctacaaaaaagaatgttgt 2961
|||||||||||||||||||| ||| |||| |||||||||||||||||||||||||| |||
Sbjct: 3207 ttttggcaacctagaacaaaagatagatgaactcaaagattctacaaaaaagaatgctgt 3266
Query: 2962 gaa 2964
|||
Sbjct: 3267 gaa 3269
Score = 58 bits (149), Expect = 1e-08
Identities = 31/33 (94%)
Strand = Plus / Plus
Query: 2733 ggcaatcagatagccctgaacccatttacgcta 2765
||| ||||| |||||||||||||||||||||||
Sbjct: 3020 ggcgatcagctagccctgaacccatttacgcta 3052
Score = 56 bits (144), Expect = 5e-08
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 779 aaagagaggcaagaagcacaaaacaatggagagcctg 815
||||| |||||||||||| |||| |||| ||||||||
Sbjct: 586 aaagaaaggcaagaagcagaaaaaaatgcagagcctg 622
Score = 49 bits (125), Expect = 7e-06
Identities = 26/28 (93%)
Strand = Plus / Plus
Query: 3373 tacaaaaagtggtttccagaaatcttaa 3400
||||||| |||||||||| |||||||||
Sbjct: 3672 tacaaaaggtggtttccaaaaatcttaa 3699
Score = 48 bits (124), Expect = 1e-05
Identities = 25/27 (93%)
Strand = Plus / Plus
Query: 1702 caacgcctccaagagtcctgatgaggg 1728
|||||| ||||||||||||||| ||||
Sbjct: 1544 caacgcttccaagagtcctgataaggg 1570
Score = 23 bits (60), Expect = 3e+02
Identities = 12/12 (100%)
Strand = Plus / Plus
Query: 2721 tcagtaaggtag 2732
||||||||||||
Sbjct: 2417 tcagtaaggtag 2428
Score = 23 bits (60), Expect = 3e+02
Identities = 12/12 (100%)
Strand = Plus / Plus
Query: 755 gatgaatctttg 766
||||||||||||
Sbjct: 574 gatgaatctttg 585
Score = 21 bits (54), Expect = 1e+03
Identities = 11/11 (100%)
Strand = Plus / Plus
Query: 1034 tacaagttcaa 1044
|||||||||||
Sbjct: 874 tacaagttcaa 884 |