>AB090080|1|G1|22335421|BAC10426.1|Helicobacter_pylori_F36|+|1..3513|cagA|-|CagA
Length = 3513
Score = 2500 bits (6452), Expect = 0.0
Identities = 1385/1518 (91%)
Strand = Plus / Plus
Query: 1034 tacaagttcaaccagttaccgattcacaataacgctctgtcttctatgctaatggggagt 1093
||||||||||| || ||| ||||||||||||||||||||||||| ||||||||||| ||
Sbjct: 856 tacaagttcaatcaattattgattcacaataacgctctgtcttctgtgctaatggggggt 915
Query: 1094 catagcagcatagaacctgaaaaagtttcattgttgtatggggataatggtggtcctgaa 1153
||||| | |||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 916 catagtaacatagaacctgaaaaagtttcattattgtatggggataatggtggtcctgaa 975
Query: 1154 gctaggcatgattggaacgccaccgttggttataaaaaccaacaaggcaacaatgtggcc 1213
|||||||||||||||||||| ||||||||||||||| |||||||||||| |||||||||
Sbjct: 976 gctaggcatgattggaacgctaccgttggttataaagaccaacaaggcagtaatgtggcc 1035
Query: 1214 acactcatcaatgcgcatcttaaaaacggcagcgggttagtcatagcgggtaatggaaat 1273
|||||||| |||||||||||||| |||||||| |||||| ||||||||||||||| ||
Sbjct: 1036 acactcattaatgcgcatcttaataacggcagtgggttaatcatagcgggtaatgaggat 1095
Query: 1274 gggattaacaaccctagcttctatctctacaaaacagaccaactcacaggcttggaacaa 1333
|||||||| |||||||||||||||||||||||| ||| ||||||||||||||| | |||
Sbjct: 1096 gggattaaaaaccctagcttctatctctacaaagaagatcaactcacaggcttgaagcaa 1155
Query: 1334 gcgttgagtcaagaagagatccaaaacaaagtggatttcatggaacttcttgcacaaaac 1393
|| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 1156 gcaatgagtcaagaagagatccaaaacaaagtggatttcatggaatttcttgcacaaaac 1215
Query: 1394 aacgctagattagataacttgagcgaggaagagaaagaaaagttccaaactgagattgga 1453
||||||| ||||||||||||||||||| ||||||||||||| ||||||| |||||||| |
Sbjct: 1216 aacgctaaattagataacttgagcgagaaagagaaagaaaaattccaaaatgagattgaa 1275
Query: 1454 aatttccaaaaagaccctaaggcttatttagactccctagggaatgatcgcattgctttt 1513
||||||||||| ||| |||||||||||| ||| ||||||||||||||| ||||||||||
Sbjct: 1276 gatttccaaaaaaaccgtaaggcttatttggacgccctagggaatgatcacattgctttt 1335
Query: 1514 gtttctaaaaaagacc-aaaagcatttagctttggttactgagtttggtaatggggaatt 1572
|||||||||||||||| |||| |||||||||||||||||||||||||||||||||||| |
Sbjct: 1336 gtttctaaaaaagacccaaaa-catttagctttggttactgagtttggtaatggggaagt 1394
Query: 1573 gagctatactctcaaagattatgggaaaaaacaagatagagctttagatagggagacaaa 1632
|||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||
Sbjct: 1395 gagctatactctcaaagattatgggaaaaaacaagataaagctttagatggggagacaaa 1454
Query: 1633 aaccactcttcaaggtaacctaaagcatgatggcgtgatgtttgtcaattattccaattt 1692
||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||
Sbjct: 1455 aaccactcttcaaggtagcctaaaatatgatggcgtgatgtttgtcaattattccaattt 1514
Query: 1693 caaatacaccaacgcctccaagagtcctgatgagggtataggcgctacgaatggcgtttc 1752
||||||||||||||||||||||||||||||| |||| | ||||||||||||||||||||
Sbjct: 1515 caaatacaccaacgcctccaagagtcctgataagggcgtgggcgctacgaatggcgtttc 1574
Query: 1753 ccatttggaagcaaattttagcaaggtggctgtctttaatttgcctgatttaaatggtct 1812
||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||
Sbjct: 1575 ccatttggaagcaaattttagcaaggtagctgtctttaatttgcctgatttaaataatct 1634
Query: 1813 cgctatctctagttttgcaaggcggaatttagaggataaactgatcgctaaaggattgcc 1872
||||||| ||| || | |||||| ||||||| ||||||||| | |||||||||||| |
Sbjct: 1635 cgctatcactaattatataaggcgagatttagaagataaactgttggctaaaggattgtc 1694
Query: 1873 cccaaaagacgctaataagatcatcaaagactttttgaacagcaacaaggaattgcttga 1932
|||| |||| |||||||| |||||||||||||||| ||||||||||| |||||| |
Sbjct: 1695 cccacaagaaactaataagctcatcaaagactttttaaacagcaacaaagaattggctag 1754
Query: 1933 aaaagctttagacttcaataaagctgtagctgaagctaaaaatacaggcaattatgacgg 1992
|||| || | ||||||||||||||||| ||||||||||||| |||||||||||||| |
Sbjct: 1755 aaaactttcaaacttcaataaagctgtaactgaagctaaaaacacaggcaattatgatga 1814
Query: 1993 agtgaaaaaagctcaaaaagatcttgaaaaatctataaggaaacgagagcgtttagagca 2052
||||||||||||||| |||||||||||||||||| ||||||||||||||| ||||||| |
Sbjct: 1815 agtgaaaaaagctcagaaagatcttgaaaaatctctaaggaaacgagagcatttagagaa 1874
Query: 2053 agaaataacgaaaaaatttgagaacaagagcggcaacaaaaataaaatggaagcgaaagt 2112
|||| ||||||||||||| |||| || | || ||||||||||| ||||||||| ||||
Sbjct: 1875 agaagtaacgaaaaaattggagagcagaaacgacaacaaaaatagaatggaagcaaaagc 1934
Query: 2113 tcaagctaacagccaaaaagatgggatttttaagcttatcaatgaagaggctcataagga 2172
|||||||||||||||||||||| ||||||| ||||||||| |||||||| ||||||
Sbjct: 1935 tcaagctaacagccaaaaagataagatttttgcacttatcaatcaagaggctagtaagga 1994
Query: 2173 agcaagaatcgccgcttacgctcagaatcttaaaggcatcaggagggaattgtttgataa 2232
||||||| |||||| || || ||||||||||||| ||||| | ||||||| ||||||
Sbjct: 1995 agcaagagcgaccgctttcgatccgaatcttaaaggcgtcaggggcgaattgtctgataa 2054
Query: 2233 agttaaaaatctcaacaagaatttgaaagactttgataaatcttttgatgcgctcaaaag 2292
| || ||||| |||||||||||||||||||||||| ||||||||||||| ||||||||
Sbjct: 2055 acttgaaaatatcaacaagaatttgaaagactttggcaaatcttttgatgaactcaaaag 2114
Query: 2293 tggcaaaaataaggatttcagcaaggcagaagaaacgctaaaagcccttgaaag-ctcgg 2351
||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||
Sbjct: 2115 tggcaaaaataaggatttcagcaaggcagaagaaacgctaaaagccctt-aaagactcgg 2173
Query: 2352 tgaaagatttgggtatcaatccagaatggatttcaaaagttgaaaaccttaatgcagctt 2411
|||||||||| || |||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 2174 tgaaagatttaggcatcaatccagaatggatttcaaaaattgaaaaccttaatgcagctt 2233
Query: 2412 tgaatgaattcaaaaatggcaaaaataaggatttcagcaaggtaacacaagcaaaaagcg 2471
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2234 tgaatgatttcaaaaatggcaaaaataaggatttcagcaaggtaacacaagcaaaaagcg 2293
Query: 2472 accttgaaaattccattaaggatgtgctcatcaatcaagagataacggataaagttgaca 2531
|||||||||||||||||||||||||| |||| |||||| |||||||||||||||||||||
Sbjct: 2294 accttgaaaattccattaaggatgtgatcattaatcaaaagataacggataaagttgaca 2353
Query: 2532 atctcaatcaggctgtat 2549
||||||||||||||||||
Sbjct: 2354 atctcaatcaggctgtat 2371
Score = 857 bits (2212), Expect = e-249
Identities = 466/504 (92%)
Strand = Plus / Plus
Query: 70 caacaatttatcaataatcttcaagtggcttttattaaacttgatagtgctgtcgcttca 129
|||| ||||||||||||||||||||| |||||| ||||| ||| | ||||||||||||
Sbjct: 52 caacgatttatcaataatcttcaagtagcttttcttaaagttggtgacgctgtcgcttca 111
Query: 130 tttgatcccgatcaaaaaccaatcgttgataagaacgatagggataacaggcaagctttt 189
|||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 112 tttgatcctgatcaaaaaccaatcgttgataagaatgatagggataacaggcaagctttt 171
Query: 190 aatgtaatctcgcaattaagggaagaatacgccaataaagcgatcaaaaatcccaccaaa 249
| |||||||||| |||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 172 gaaaaaatctcgcaactaagggaagaatacgctaataaagcgatcaaaaatcccaccaaa 231
Query: 250 aagaatcagtatttttcagactttatcgataaaagcaatgatttgatcaacaaaaacgat 309
||||||||||||||||||||||||||| |||| ||||||||||||||||||||| || ||
Sbjct: 232 aagaatcagtatttttcagactttatcaataagagcaatgatttgatcaacaaagacaat 291
Query: 310 ctcattgatacagattcttccacaaagagctttgaaaaatttggggctcagcgttaccaa 369
||||||| | |||||||||| | |||||||| |||||||||| |||||||||||||
Sbjct: 292 ctcattgctgtagattcttccgtagagagctttcggaaatttggggatcagcgttaccaa 351
Query: 370 atttttatgaattgggtgtcccatcaaaaagatccgtctaaaatcaacacccaaaaaatc 429
||||||| || ||||||||||| ||||||||||||||||||||||||||||||| |||||
Sbjct: 352 atttttacgagttgggtgtcccttcaaaaagatccgtctaaaatcaacacccaacaaatc 411
Query: 430 cgagattttatggaaaatatcatacaaccccctatctctgatgataaagaaaaagcggag 489
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 412 cgaaattttatggaaaatatcatacaaccccctatctctgatgataaagaaaaagcggag 471
Query: 490 tttttgaggtctgccaaacaatcttttgcaggaattatcatagggaaccaaacccgatcg 549
||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||
Sbjct: 472 tttttgaggtctgccaaacaatcttttgcaggaattatcatagggaatcaaatccgatcg 531
Query: 550 gatgaaaaattcatgggcgttttt 573
|||||||||||||||||||| |||
Sbjct: 532 gatgaaaaattcatgggcgtgttt 555
Score = 523 bits (1351), Expect = e-149
Identities = 280/298 (94%)
Strand = Plus / Plus
Query: 3013 gcaagcgaaattggacaattacgctactaacagccacacacgcattaatagcaatgtcaa 3072
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 3123 gcaagcgaaattggacaattacgctactaacagccacacacgcattaatagcaatgtcca 3182
Query: 3073 aaatggaacaatcaatgaaaaagcgatcggcatgctaacgcaaaaaaaccctgagtggct 3132
|| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 3183 aagtggaacaatcaatgaaaaagcgaccggcatgctaacgcaaaaaaaccctgagtggct 3242
Query: 3133 caagcttgtgaatgataagatagttgcgcataatgtgggaagcgctcctttgtcaggtta 3192
|||||| |||||||||||||||||||| ||||||||||||||||||| |||||||| ||
Sbjct: 3243 caagctcgtgaatgataagatagttgcacataatgtgggaagcgctcatttgtcagagta 3302
Query: 3193 tgataaaattggattcaaccaaaagaatatgaaaggttattctgattcgttcaggttttc 3252
||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct: 3303 tgataaaattggattcaaccaaaagaatatgaaagattattctgattcgttcaagttttc 3362
Query: 3253 caccaagttgagcaatgccgtaaaaaacattaagtctgactttaagcaacttttaacc 3310
||||||||||| ||||| |||||| |||||||||||| |||| |||| ||||||||
Sbjct: 3363 caccaagttgaacaatgttgtaaaagacattaagtctggctttgtgcaatttttaacc 3420
Score = 378 bits (976), Expect = e-105
Identities = 205/217 (94%)
Strand = Plus / Plus
Query: 817 tggggattggcttgatatttttttatcgtttgtatttaacaaagaacaatcttctgatct 876
||||||||||||||||||||||||||| ||||| ||||||||| |||||||||| |||||
Sbjct: 609 tggggattggcttgatatttttttatcatttgtgtttaacaaaaaacaatcttccgatct 668
Query: 877 caaagaaacgctcaatcaagagccaaggcctcatgttgaacaaaatgtagcctctacccc 936
||||||||||||||||||||||||||||||| || ||||||||||| ||||| ||||| |
Sbjct: 669 caaagaaacgctcaatcaagagccaaggcctgattttgaacaaaatttagccactaccac 728
Query: 937 cacccacatacaaggcttaccgcctgaagctagggatttgcttgatgaaaggggtgattt 996
|||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 729 caccgacatacaaggcttaccgcctgaagctagggatttgcttgatgaaaggggtaattt 788
Query: 997 ttctaaattcactcttggtgatatggaaatgttggat 1033
|| ||||||||||||||||||||||||||||||||||
Sbjct: 789 ttttaaattcactcttggtgatatggaaatgttggat 825
Score = 243 bits (628), Expect = 2e-64
Identities = 136/153 (89%)
Strand = Plus / Plus
Query: 2805 ttgatgatctcagtaaggtagggctttcaagggagcaagaattgaatgagaaaattggca 2864
|||||||||||||||| ||||||||||||||||| |||||||||| | | |||||||
Sbjct: 2924 ttgatgatctcagtaaagtagggctttcaagggaacaagaattgacttgtagaattggcg 2983
Query: 2865 atctcaatcaggcagtgtcagaagctaaagcaggttcttttggcaacctagaacaaatga 2924
||||||||||||| ||||||||||||||| ||||| ||||| |||||||||||||| ||
Sbjct: 2984 atctcaatcaggcggtgtcagaagctaaaacaggtcgttttgacaacctagaacaaaaga 3043
Query: 2925 tggatggactcaaagattctacaaaaaagaatg 2957
| |||| ||||||||||||||| ||||||||||
Sbjct: 3044 tagatgaactcaaagattctacgaaaaagaatg 3076
Score = 47 bits (121), Expect = 2e-05
Identities = 28/31 (90%)
Strand = Plus / Plus
Query: 785 aggcaagaagcacaaaacaatggagagcctg 815
|||||||||||| |||| |||| ||||||||
Sbjct: 574 aggcaagaagcagaaaaaaatgcagagcctg 604
Score = 45 bits (116), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 2743 tagccctgaacccatttacgcta 2765
|||||||||||||||||||||||
Sbjct: 2844 tagccctgaacccatttacgcta 2866
Score = 29 bits (74), Expect = 7e+00
Identities = 15/16 (94%)
Strand = Plus / Plus
Query: 2721 tcagtaaggtagggca 2736
|||||||||||| |||
Sbjct: 2396 tcagtaaggtagagca 2411
Score = 28 bits (73), Expect = 9e+00
Identities = 15/16 (94%)
Strand = Plus / Plus
Query: 2988 aagtgcctattagttt 3003
||||||||| ||||||
Sbjct: 3107 aagtgcctactagttt 3122
Score = 23 bits (60), Expect = 3e+02
Identities = 12/12 (100%)
Strand = Plus / Plus
Query: 683 gatgaatctttg 694
||||||||||||
Sbjct: 556 gatgaatctttg 567
Score = 16 bits (40), Expect = 6e+04
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 2782 ccctttga 2789
||||||||
Sbjct: 2901 ccctttga 2908
Score = 13 bits (35), Expect = 3e+05
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2972 tttgaag 2978
|||||||
Sbjct: 3078 tttgaag 3084
Score = 12 bits (30), Expect = 1e+06
Identities = 6/6 (100%)
Strand = Plus / Plus
Query: 2737 atcaga 2742
||||||
Sbjct: 2560 atcaga 2565
|
