>AB090078|1|G1|22335413|BAC10424.1|Helicobacter_pylori_F26|+|1..3810|cagA|-|CagA
Length = 3810
Score = 2504 bits (6461), Expect = 0.0
Identities = 1387/1518 (91%)
Strand = Plus / Plus
Query: 1034 tacaagttcaaccagttaccgattcacaataacgctctgtcttctatgctaatggggagt 1093
||||||||||| || ||| ||| |||||||||||||| |||||| ||||||||||||||
Sbjct: 874 tacaagttcaatcaattattgatccacaataacgctctatcttctgtgctaatggggagt 933
Query: 1094 catagcagcatagaacctgaaaaagtttcattgttgtatggggataatggtggtcctgaa 1153
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 934 catagcagcatagaacctgaaaaagtttcattattgtatggggataatggtggtcctgaa 993
Query: 1154 gctaggcatgattggaacgccaccgttggttataaaaaccaacaaggcaacaatgtggcc 1213
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 994 gctaggcatgattggaacgccaccgttggttataaaaaccaacaaggcagtaatgtggcc 1053
Query: 1214 acactcatcaatgcgcatcttaaaaacggcagcgggttagtcatagcgggtaatggaaat 1273
|||||||| |||||||||||||| |||||||| |||||||||||||||||||||| ||||
Sbjct: 1054 acactcattaatgcgcatcttaataacggcagtgggttagtcatagcgggtaatgaaaat 1113
Query: 1274 gggattaacaaccctagcttctatctctacaaaacagaccaactcacaggcttggaacaa 1333
|||||||| |||||||||||||||||||||||| ||| ||||||||||| ||| |||||
Sbjct: 1114 gggattaaaaaccctagcttctatctctacaaagaagatcaactcacaggtttgaaacaa 1173
Query: 1334 gcgttgagtcaagaagagatccaaaacaaagtggatttcatggaacttcttgcacaaaac 1393
||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct: 1174 gcgttgagtcaagaagagatccaaaacaaagtggatttcatggaatttcttgcaaaaaac 1233
Query: 1394 aacgctagattagataacttgagcgaggaagagaaagaaaagttccaaactgagattgga 1453
||||||| |||||| |||||||||||| ||||||||||||| |||||||||||||||| |
Sbjct: 1234 aacgctaaattagacaacttgagcgagaaagagaaagaaaaattccaaactgagattgaa 1293
Query: 1454 aatttccaaaaagaccctaaggcttatttagactccctagggaatgatcgcattgctttt 1513
|||||||||||||||| ||||||||| || ||| | ||||||||||||| ||||||||||
Sbjct: 1294 aatttccaaaaagaccgtaaggcttacttggacgctctagggaatgatcacattgctttt 1353
Query: 1514 gtttctaaaaaagacc-aaaagcatttagctttggttactgagtttggtaatggggaatt 1572
|||||||||||||||| |||| |||||||||||||||||||||||||||||||||||| |
Sbjct: 1354 gtttctaaaaaagacccaaaa-catttagctttggttactgagtttggtaatggggaagt 1412
Query: 1573 gagctatactctcaaagattatgggaaaaaacaagatagagctttagatagggagacaaa 1632
|||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||
Sbjct: 1413 gagctatactctcaaagattatgggaaaaaacaagataaagctttagatggggagacaaa 1472
Query: 1633 aaccactcttcaaggtaacctaaagcatgatggcgtgatgtttgtcaattattccaattt 1692
||||||||||||||||| |||||| ||||||||||||||||||| ||||||| |||||
Sbjct: 1473 aaccactcttcaaggtagcctaaaatatgatggcgtgatgtttgttgattattctaattt 1532
Query: 1693 caaatacaccaacgcctccaagagtcctgatgagggtataggcgctacgaatggcgtttc 1752
||||||||||||||||||||||||||||||| |||| | ||||||||||||||||||||
Sbjct: 1533 caaatacaccaacgcctccaagagtcctgataagggcgtgggcgctacgaatggcgtttc 1592
Query: 1753 ccatttggaagcaaattttagcaaggtggctgtctttaatttgcctgatttaaatggtct 1812
|||||||||||||||||||||||| || |||||||||||||||||| |||||||| |||
Sbjct: 1593 ccatttggaagcaaattttagcaaagtagctgtctttaatttgcctaatttaaataatct 1652
Query: 1813 cgctatctctagttttgcaaggcggaatttagaggataaactgatcgctaaaggattgcc 1872
||||||| ||| || | |||||| ||||||| |||||| || | |||||||||||| |
Sbjct: 1653 cgctatcactaattatataaggcgagatttagaagataaattgttggctaaaggattgtc 1712
Query: 1873 cccaaaagacgctaataagatcatcaaagactttttgaacagcaacaaggaattgcttga 1932
|||| |||| ||||||||| |||||||||||||||||||||||||||| ||| || |||
Sbjct: 1713 cccacaagaagctaataagctcatcaaagactttttgaacagcaacaaagaaatggttgg 1772
Query: 1933 aaaagctttagacttcaataaagctgtagctgaagctaaaaatacaggcaattatgacgg 1992
||||| |||| ||||||||||||||||||||| ||||||||| |||||||||||||| |
Sbjct: 1773 aaaagttttaaacttcaataaagctgtagctggagctaaaaacacaggcaattatgatga 1832
Query: 1993 agtgaaaaaagctcaaaaagatcttgaaaaatctataaggaaacgagagcgtttagagca 2052
||||||||||||||| |||||||||||||||||| ||||||||||||||| ||||||| |
Sbjct: 1833 agtgaaaaaagctcagaaagatcttgaaaaatctctaaggaaacgagagcatttagagaa 1892
Query: 2053 agaaataacgaaaaaatttgagaacaagagcggcaacaaaaataaaatggaagcgaaagt 2112
|||| || |||||||||| |||| || | | ||||||||||| ||||||||| ||||
Sbjct: 1893 agaagtagcgaaaaaattggagagcagaaacaacaacaaaaatagaatggaagcaaaagc 1952
Query: 2113 tcaagctaacagccaaaaagatgggatttttaagcttatcaatgaagaggctcataagga 2172
|||||||||||||||||||||| ||||||| ||||||||| |||||||| ||||||
Sbjct: 1953 tcaagctaacagccaaaaagataagatttttgcacttatcaatcaagaggctagtaagga 2012
Query: 2173 agcaagaatcgccgcttacgctcagaatcttaaaggcatcaggagggaattgtttgataa 2232
||||||| ||||||| || || || |||||||||||||||||| ||||||| ||||||
Sbjct: 2013 agcaagagcagccgctttcgatccgagtcttaaaggcatcaggagcgaattgtctgataa 2072
Query: 2233 agttaaaaatctcaacaagaatttgaaagactttgataaatcttttgatgcgctcaaaag 2292
| || ||||| ||||||| |||||||||||||||| ||||||||||||| |||||||
Sbjct: 2073 acttgaaaatatcaacaaaaatttgaaagactttggcaaatcttttgatgaactcaaaaa 2132
Query: 2293 tggcaaaaataaggatttcagcaaggcagaagaaacgctaaaagcccttgaaag-ctcgg 2351
|||||||||||| |||||||||||||||||||||||||||||||||||| |||| |||||
Sbjct: 2133 tggcaaaaataatgatttcagcaaggcagaagaaacgctaaaagccctt-aaagactcgg 2191
Query: 2352 tgaaagatttgggtatcaatccagaatggatttcaaaagttgaaaaccttaatgcagctt 2411
|||||||||| | |||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 2192 tgaaagatttagccatcaatccagaatggatttcaaaaattgaaaaccttaatgcagctt 2251
Query: 2412 tgaatgaattcaaaaatggcaaaaataaggatttcagcaaggtaacacaagcaaaaagcg 2471
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2252 tgaatgatttcaaaaatggcaaaaataaggatttcagcaaggtaacacaagcaaaaagcg 2311
Query: 2472 accttgaaaattccattaaggatgtgctcatcaatcaagagataacggataaagttgaca 2531
|||||||||||||||||||||||||| |||| |||||| |||||||||||||||||||||
Sbjct: 2312 accttgaaaattccattaaggatgtgatcattaatcaaaagataacggataaagttgaca 2371
Query: 2532 atctcaatcaggctgtat 2549
||||||||||||||||||
Sbjct: 2372 atctcaatcaggctgtat 2389
Score = 977 bits (2520), Expect = e-285
Identities = 538/586 (92%)
Strand = Plus / Plus
Query: 1 atggctaacgaaaccatcaatcaaacaaaaaaaccagatcaaacaccaagccaaacggct 60
||| |||||||||| || ||||||||| || ||||||||||||||||| ||||| | |
Sbjct: 1 atgactaacgaaactattgatcaaacaacaacaccagatcaaacaccaaatcaaacagat 60
Query: 61 tttaatccacaacaatttatcaataatcttcaagtggcttttattaaacttgatagtgct 120
||| ||| |||| ||||||||||||||||||||| |||||||| ||| |||||| |||
Sbjct: 61 tttgttccgcaacgatttatcaataatcttcaagtagcttttatcaaagttgataacgct 120
Query: 121 gtcgcttcatttgatcccgatcaaaaaccaatcgttgataagaacgatagggataacagg 180
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 121 gtcgcttcatttgatcccgatcaaaaaccaatcgttgataagaatgatagggataacagg 180
Query: 181 caagcttttaatgtaatctcgcaattaagggaagaatacgccaataaagcgatcaaaaat 240
||||||||| | |||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 181 caagcttttgagaaaatctcgcaactaagggaagaatacgccaataaagcgatcaaaaat 240
Query: 241 cccaccaaaaagaatcagtatttttcagactttatcgataaaagcaatgatttgatcaac 300
|||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||
Sbjct: 241 cccaccaaaaagaatcagtatttttcagactttatcaataagagcaatgatttgatcaac 300
Query: 301 aaaaacgatctcattgatacagattcttccacaaagagctttgaaaaatttggggctcag 360
||| || ||||||||| | |||||||||| | |||||||| |||||||||| ||||
Sbjct: 301 aaagacaatctcattgctgtagattcttccgtagagagctttcggaaatttggggatcag 360
Query: 361 cgttaccaaatttttatgaattgggtgtcccatcaaaaagatccgtctaaaatcaacacc 420
|||||||||||||||| || ||||||||||| ||||||||||||||||||||||||||||
Sbjct: 361 cgttaccaaatttttacgagttgggtgtcccttcaaaaagatccgtctaaaatcaacacc 420
Query: 421 caaaaaatccgagattttatggaaaatatcatacaaccccctatctctgatgataaagaa 480
||| |||||||| ||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 421 caacaaatccgaaattttatggaaaatatcatacaaccccctatctctgatgataaggaa 480
Query: 481 aaagcggagtttttgaggtctgccaaacaatcttttgcaggaattatcatagggaaccaa 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 aaagcggagtttttgaggtctgccaaacaatcttttgcaggaattatcatagggaaccaa 540
Query: 541 acccgatcggatgaaaaattcatgggcgtttttggatgaatctttg 586
| ||||||||||||||||||||||||||| ||| ||||||||||||
Sbjct: 541 atccgatcggatgaaaaattcatgggcgtgttt-gatgaatctttg 585
Score = 487 bits (1256), Expect = e-138
Identities = 259/274 (95%)
Strand = Plus / Plus
Query: 3016 agcgaaattggacaattacgctactaacagccacacacgcattaatagcaatgtcaaaaa 3075
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 3423 agcgaaattggacaattacgctactaacagccacacacgcattaatagcaatgtccaaag 3482
Query: 3076 tggaacaatcaatgaaaaagcgatcggcatgctaacgcaaaaaaaccctgagtggctcaa 3135
|||| |||| ||||| ||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 3483 tggagcaattaatgagaaagcgaccggcatgctaacgcaaaaaaaccctgagtggctcaa 3542
Query: 3136 gcttgtgaatgataagatagttgcgcataatgtgggaagcgctcctttgtcaggttatga 3195
||| |||||||||||||||||||| |||||||||||||| |||| |||||||| |||||
Sbjct: 3543 gctcgtgaatgataagatagttgcacataatgtgggaagtgctcatttgtcagagtatga 3602
Query: 3196 taaaattggattcaaccaaaagaatatgaaaggttattctgattcgttcaggttttccac 3255
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 3603 taaaattggattcaaccaaaagaatatgaaaggttattctgattcgttcaagttttccac 3662
Query: 3256 caagttgagcaatgccgtaaaaaacattaagtct 3289
|||||||| ||||||||||||| |||||||||||
Sbjct: 3663 caagttgaacaatgccgtaaaagacattaagtct 3696
Score = 370 bits (955), Expect = e-102
Identities = 201/217 (93%)
Strand = Plus / Plus
Query: 817 tggggattggcttgatatttttttatcgtttgtatttaacaaagaacaatcttctgatct 876
||||||||||||||||||||||||||| ||||| ||||||||| |||||||||| |||||
Sbjct: 627 tggggattggcttgatatttttttatcatttgtgtttaacaaaaaacaatcttccgatct 686
Query: 877 caaagaaacgctcaatcaagagccaaggcctcatgttgaacaaaatgtagcctctacccc 936
||||||||||||||||||||||||||||||| || ||||||||||| ||||| ||||| |
Sbjct: 687 caaagaaacgctcaatcaagagccaaggcctgattttgaacaaaatatagccactaccac 746
Query: 937 cacccacatacaaggcttaccgcctgaagctagggatttgcttgatgaaaggggtgattt 996
|||| ||||||||||||||||||||||||||| ||||||||||||||||||||| ||||
Sbjct: 747 caccagcatacaaggcttaccgcctgaagctagagatttgcttgatgaaaggggtaattt 806
Query: 997 ttctaaattcactcttggtgatatggaaatgttggat 1033
|| ||||||||||||||||||| |||| |||||||||
Sbjct: 807 ttttaaattcactcttggtgatgtggagatgttggat 843
Score = 245 bits (631), Expect = 7e-65
Identities = 137/155 (88%)
Strand = Plus / Plus
Query: 2803 agttgatgatctcagtaaggtagggctttcaagggagcaagaattgaatgagaaaattgg 2862
|||| ||||||||||||| ||||||||||||||||| ||||||||| | | ||||||
Sbjct: 3219 agttaatgatctcagtaaagtagggctttcaagggaacaagaattggctcgtagaattgg 3278
Query: 2863 caatctcaatcaggcagtgtcagaagctaaagcaggttcttttggcaacctagaacaaat 2922
| ||||||||||||| || |||||||||||| ||||| ||||||||||||||||||||
Sbjct: 3279 cgatctcaatcaggcggtatcagaagctaaaacaggtcattttggcaacctagaacaaaa 3338
Query: 2923 gatggatggactcaaagattctacaaaaaagaatg 2957
||| |||| ||||||||||||||||||||||||||
Sbjct: 3339 gatagatgaactcaaagattctacaaaaaagaatg 3373
Score = 66 bits (171), Expect = 3e-11
Identities = 38/44 (86%)
Strand = Plus / Plus
Query: 2566 aggcgattttagtggggtagagcaagagctagccaaactcaaaa 2609
||||||||| ||| ||||||||||| |||||| |||||||||
Sbjct: 2406 aggcgatttcagtaaggtagagcaagtcctagccgaactcaaaa 2449
Score = 62 bits (159), Expect = 8e-10
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 2731 agggcaatcagatagccctgaacccatttacgcta 2765
||||| ||||| |||||||||||||||||||||||
Sbjct: 3129 agggcgatcagctagccctgaacccatttacgcta 3163
Score = 47 bits (121), Expect = 2e-05
Identities = 28/31 (90%)
Strand = Plus / Plus
Query: 785 aggcaagaagcacaaaacaatggagagcctg 815
|||||||||||| |||| |||| ||||||||
Sbjct: 592 aggcaagaagcagaaaaaaatgcagagcctg 622
Score = 13 bits (35), Expect = 3e+05
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2972 tttgaag 2978
|||||||
Sbjct: 3375 tttgaag 3381 |