>AB090077|1|G1|22335410|BAC10423.1|Helicobacter_pylori_F18|+|1..3720|cagA|-|CagA
Length = 3720
Score = 2561 bits (6609), Expect = 0.0
Identities = 1420/1558 (91%)
Strand = Plus / Plus
Query: 1058 cacaataacgctctgtcttctatgctaatggggagtcatagcagcatagaacctgaaaaa 1117
|||||||||||||| |||||| ||||||||||| ||||||| | |||||||||||||||
Sbjct: 898 cacaataacgctctatcttctgtgctaatggggggtcatagtaacatagaacctgaaaag 957
Query: 1118 gtttcattgttgtatggggataatggtggtcctgaagctaggcatgattggaacgccacc 1177
|||||||| |||||||||||||||||||| |||||||||||||||||||||||||| |||
Sbjct: 958 gtttcattattgtatggggataatggtggccctgaagctaggcatgattggaacgctacc 1017
Query: 1178 gttggttataaaaaccaacaaggcaacaatgtggccacactcatcaatgcgcatcttaaa 1237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 1018 gttggttataaaaaccaacaaggcaacaatgtggccacactcatcaatgcgcatcttcat 1077
Query: 1238 aacggcagcgggttagtcatagcgggtaatggaaatgggattaacaaccctagcttctat 1297
|||||||| |||||||||||||||||||||| |||||||||| |||||||||||||||
Sbjct: 1078 aacggcagtgggttagtcatagcgggtaatgaggatgggattaaaaaccctagcttctat 1137
Query: 1298 ctctacaaaacagaccaactcacaggcttggaacaagcgttgagtcaagaagagatccaa 1357
||||||||| |||||||||||||||| ||| ||||||| ||||||||||||||||||||
Sbjct: 1138 ctctacaaagcagaccaactcacaggtttgaaacaagcaatgagtcaagaagagatccaa 1197
Query: 1358 aacaaagtggatttcatggaacttcttgcacaaaacaacgctagattagataacttgagc 1417
||||||||||||||||||||| |||| || ||||||||||||| |||||| |||||||||
Sbjct: 1198 aacaaagtggatttcatggaatttctcgcgcaaaacaacgctaaattagacaacttgagc 1257
Query: 1418 gaggaagagaaagaaaagttccaaactgagattggaaatttccaaaaagaccctaaggct 1477
||| ||||||||||||| |||||| ||||||||||||||||||||||||||| ||| |||
Sbjct: 1258 gagaaagagaaagaaaaattccaagctgagattggaaatttccaaaaagaccgtaaagct 1317
Query: 1478 tatttagactccctagggaatgatcgcattgcttttgtttctaaaaaagacc-aaaagca 1536
||||||||| | ||||||||||||| |||||||||||||||||||||||||| |||| ||
Sbjct: 1318 tatttagacgctctagggaatgatcacattgcttttgtttctaaaaaagacccaaaa-ca 1376
Query: 1537 tttagctttggttactgagtttggtaatggggaattgagctatactctcaaagattatgg 1596
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 1377 tttagctttggttactgagtttggtaatggggaagtgagctatactctcaaagattatgg 1436
Query: 1597 gaaaaaacaagatagagctttagatagggagacaaaaaccactcttcaaggtaacctaaa 1656
|||||||||||||| |||||||||| ||||||||||||||||||||||||||| ||||||
Sbjct: 1437 gaaaaaacaagataaagctttagatggggagacaaaaaccactcttcaaggtagcctaaa 1496
Query: 1657 gcatgatggcgtgatgtttgtcaattattccaatttcaaatacaccaacgcctccaagag 1716
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 1497 atatgatggcgtgatgtttgttgattattccaatttcaaatacaccaacgcctccaagag 1556
Query: 1717 tcctgatgagggtataggcgctacgaatggcgtttcccatttggaagcaaattttagcaa 1776
|||| || ||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1557 tcctaataagggtttaggcgctacgaatggcgtttcccatttggaagcaaattttagcaa 1616
Query: 1777 ggtggctgtctttaatttgcctgatttaaatggtctcgctatctctagttttgcaaggcg 1836
||| |||||||||||||||||| |||||||| |||||||||| ||| || | ||||||
Sbjct: 1617 ggtagctgtctttaatttgcctaatttaaataatctcgctatcactaattatataaggcg 1676
Query: 1837 gaatttagaggataaactgatcgctaaaggattgcccccaaaagacgctaataagatcat 1896
||||||| |||||| || | |||||||||||| ||||| |||| ||||||||| ||||
Sbjct: 1677 agatttagaagataaattgttggctaaaggattgtccccacaagaagctaataagctcat 1736
Query: 1897 caaagactttttgaacagcaacaaggaattgcttgaaaaagctttagacttcaataaagc 1956
|||||||||||||||||||||||| |||||| ||| ||||| || | |||||||||||||
Sbjct: 1737 caaagactttttgaacagcaacaaagaattggttggaaaagtttcaaacttcaataaagc 1796
Query: 1957 tgtagctgaagctaaaaatacaggcaattatgacggagtgaaaaaagctcaaaaagatct 2016
|||||||||||||||||| |||||||||||||| | ||||||||||||||| ||||||||
Sbjct: 1797 tgtagctgaagctaaaaacacaggcaattatgatgaagtgaaaaaagctcagaaagatct 1856
Query: 2017 tgaaaaatctataaggaaacgagagcgtttagagcaagaaataacgaaaaaatttgagaa 2076
|||||||||| ||||||||||||||| ||||||| ||||| || |||||||||| ||||
Sbjct: 1857 tgaaaaatctctaaggaaacgagagcatttagagaaagaagtagcgaaaaaattggagag 1916
Query: 2077 caagagcggcaacaaaaataaaatggaagcgaaagttcaagctaacagccaaaaagatgg 2136
|| | || ||||||||||| ||||||||| |||| ||||||||||||||||||||||
Sbjct: 1917 cagaaacgacaacaaaaatagaatggaagcaaaagctcaagctaacagccaaaaagataa 1976
Query: 2137 gatttttaagcttatcaatgaagaggctcataaggaagcaagaatcgccgcttacgctca 2196
||||||| ||||||||| |||||||| ||||||||||||| ||||||| || ||
Sbjct: 1977 gatttttgcacttatcaatcaagaggctagtaaggaagcaagagcagccgctttcgatcc 2036
Query: 2197 gaatcttaaaggcatcaggagggaattgtttgataaagttaaaaatctcaacaagaattt 2256
|||||||||||| |||||||| ||||||| ||||||| || ||||| |||||||||||||
Sbjct: 2037 gaatcttaaaggtatcaggagcgaattgtctgataaacttgaaaatatcaacaagaattt 2096
Query: 2257 gaaagactttgataaatcttttgatgcgctcaaaagtggcaaaaataaggatttcagcaa 2316
||||||||||| ||||||||||||| ||||||| |||||||||||| |||||||||||
Sbjct: 2097 gaaagactttggcaaatcttttgatgaactcaaaaatggcaaaaataatgatttcagcaa 2156
Query: 2317 ggcagaagaaacgctaaaagcccttgaaag-ctcggtgaaagatttgggtatcaatccag 2375
||||||||||||||||||||||||| |||| ||||||||||||||| |||||||||||||
Sbjct: 2157 ggcagaagaaacgctaaaagccctt-aaagactcggtgaaagatttaggtatcaatccag 2215
Query: 2376 aatggatttcaaaagttgaaaaccttaatgcagctttgaatgaattcaaaaatggcaaaa 2435
|||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 2216 aatggatttcaaaaattgaaaaccttaatgcagctttgaatgatttcaaaaatggcaaaa 2275
Query: 2436 ataaggatttcagcaaggtaacacaagcaaaaagcgaccttgaaaattccattaaggatg 2495
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2276 ataaggatttcagcaaggtaacacaagcaaaaagcgaccttgaaaattccattaaggatg 2335
Query: 2496 tgctcatcaatcaagagataacggataaagttgacaatctcaatcaggctgtattaaggg 2555
|| |||| |||||| ||||||||||||||||||||||||||||||||||||||| | |
Sbjct: 2336 tgatcattaatcaaaagataacggataaagttgacaatctcaatcaggctgtatcagaga 2395
Query: 2556 ctaaagcgataggcgattttagtggggtagagcaagagctagccaaactcaaaagctt 2613
||||| | ||||||||| ||| ||||||||||| |||||| |||||||||||||
Sbjct: 2396 ctaaattaacaggcgatttcagtaaggtagagcaagccctagccgaactcaaaagctt 2453
Score = 953 bits (2459), Expect = e-278
Identities = 520/566 (92%)
Strand = Plus / Plus
Query: 1 atggctaacgaaaccatcaatcaaacaaaaaaaccagatcaaacaccaagccaaacggct 60
||| |||||||||| || ||||||||| || ||||||||||||||||| ||||| | |
Sbjct: 1 atgactaacgaaactattgatcaaacaacaacaccagatcaaacaccaaatcaaacagat 60
Query: 61 tttaatccacaacaatttatcaataatcttcaagtggcttttattaaacttgatagtgct 120
||| ||| |||| ||||||||||||||||||||| |||||||||||| |||||| |||
Sbjct: 61 tttgttccgcaacgatttatcaataatcttcaagtagcttttattaaagttgataacgct 120
Query: 121 gtcgcttcatttgatcccgatcaaaaaccaatcgttgataagaacgatagggataacagg 180
||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct: 121 gtcgcttcatttgatcctgatcaaaaaccaatcgttgataagaatgatagggataacagg 180
Query: 181 caagcttttaatgtaatctcgcaattaagggaagaatacgccaataaagcgatcaaaaat 240
||||||||| | |||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 181 caagcttttgagaaaatctcgcaactaagggaagaatacgccaataaagcgatcaaaaat 240
Query: 241 cccaccaaaaagaatcagtatttttcagactttatcgataaaagcaatgatttgatcaac 300
|||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||
Sbjct: 241 cccaccaaaaagaatcagtatttttcagactttatcaataagagcaatgatttgatcaac 300
Query: 301 aaaaacgatctcattgatacagattcttccacaaagagctttgaaaaatttggggctcag 360
||| || ||||||||| | |||||||||| | |||||||| |||||||||| ||||
Sbjct: 301 aaagacaatctcattgctgtagattcttccgtagagagctttcggaaatttggggatcag 360
Query: 361 cgttaccaaatttttatgaattgggtgtcccatcaaaaagatccgtctaaaatcaacacc 420
|||||||||||||||| || ||||||||||| ||||||||||||||||||||||||||||
Sbjct: 361 cgttaccaaatttttacgagttgggtgtcccttcaaaaagatccgtctaaaatcaacacc 420
Query: 421 caaaaaatccgagattttatggaaaatatcatacaaccccctatctctgatgataaagaa 480
||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 caacaaatccgaaattttatggaaaatatcatacaaccccctatctctgatgataaagaa 480
Query: 481 aaagcggagtttttgaggtctgccaaacaatcttttgcaggaattatcatagggaaccaa 540
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 481 aaagcggagtttttgaggtctgccaaacaatcttttgcaggaattatcataggaaaccaa 540
Query: 541 acccgatcggatgaaaaattcatggg 566
| ||||||||||||||||||||||||
Sbjct: 541 atccgatcggatgaaaaattcatggg 566
Score = 557 bits (1437), Expect = e-159
Identities = 305/332 (92%)
Strand = Plus / Plus
Query: 3006 ctagttcgcaagcgaaattggacaattacgctactaacagccacacacgcattaatagca 3065
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3323 ctagtttgcaagcgaaattggacaattacgctactaacagccacacacgcattaatagca 3382
Query: 3066 atgtcaaaaatggaacaatcaatgaaaaagcgatcggcatgctaacgcaaaaaaaccctg 3125
||||| ||| ||||||||||||||||||||||| ||| ||||||||||||||||||||||
Sbjct: 3383 atgtccaaactggaacaatcaatgaaaaagcgaccggtatgctaacgcaaaaaaaccctg 3442
Query: 3126 agtggctcaagcttgtgaatgataagatagttgcgcataatgtgggaagcgctcctttgt 3185
||||||||||||| |||||||||||||||||||| |||||||||||||| | ||||||||
Sbjct: 3443 agtggctcaagctcgtgaatgataagatagttgcacataatgtgggaagtgttcctttgt 3502
Query: 3186 caggttatgataaaattggattcaaccaaaagaatatgaaaggttattctgattcgttca 3245
||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 3503 cagagtatgataaaattggattcaaccaaaagaatatgaaagattattctgattcgttca 3562
Query: 3246 ggttttccaccaagttgagcaatgccgtaaaaaacattaagtctgactttaagcaacttt 3305
||||||||||||||||| ||||||||||||| ||||||||||| |||| |||| |||
Sbjct: 3563 agttttccaccaagttgaacaatgccgtaaaagacattaagtctagctttgtgcaatttt 3622
Query: 3306 taaccgattgcatttctgcaggaacttacagc 3337
||||| || ||||| ||||| ||||||||
Sbjct: 3623 taaccaatacattttctacaggatcttacagc 3654
Score = 371 bits (956), Expect = e-103
Identities = 202/217 (93%)
Strand = Plus / Plus
Query: 817 tggggattggcttgatatttttttatcgtttgtatttaacaaagaacaatcttctgatct 876
||||||||||||||||||||||||||| ||||| ||||||||| |||||||||| |||||
Sbjct: 627 tggggattggcttgatatttttttatcatttgtgtttaacaaaaaacaatcttccgatct 686
Query: 877 caaagaaacgctcaatcaagagccaaggcctcatgttgaacaaaatgtagcctctacccc 936
||||||||| ||||||||||||||||||||| || ||||||||||| ||||| ||||| |
Sbjct: 687 caaagaaacactcaatcaagagccaaggcctgattttgaacaaaatttagccactaccac 746
Query: 937 cacccacatacaaggcttaccgcctgaagctagggatttgcttgatgaaaggggtgattt 996
|||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 747 caccgacatacaaggcttaccgcctgaagctagggatttgcttgatgaaaggggtaattt 806
Query: 997 ttctaaattcactcttggtgatatggaaatgttggat 1033
|| ||||||||||||||||||| |||| |||||||||
Sbjct: 807 ttttaaattcactcttggtgatgtggagatgttggat 843
Score = 267 bits (688), Expect = 2e-71
Identities = 152/176 (86%)
Strand = Plus / Plus
Query: 2782 ccctttgaaaaggtatgctaaagttgatgatctcagtaaggtagggctttcaagggagca 2841
|||||||| ||| |||| |||| ||||||||||||| ||||||||||||||||| ||
Sbjct: 3108 ccctttgagaagaagtgctgcagttaatgatctcagtaaagtagggctttcaagggaaca 3167
Query: 2842 agaattgaatgagaaaattggcaatctcaatcaggcagtgtcagaagctaaagcaggttc 2901
|||||||| | | ||||||| ||||||||||||| || |||||||||||| |||||
Sbjct: 3168 agaattgactcgtagaattggcgatctcaatcaggcggtatcagaagctaaaacaggtca 3227
Query: 2902 ttttggcaacctagaacaaatgatggatggactcaaagattctacaaaaaagaatg 2957
|||||||||||||||||||| ||| |||| ||||||||||||||| ||||||||||
Sbjct: 3228 ttttggcaacctagaacaaaagatagatgaactcaaagattctacgaaaaagaatg 3283
Score = 62 bits (159), Expect = 8e-10
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 2731 agggcaatcagatagccctgaacccatttacgcta 2765
||||| ||||| |||||||||||||||||||||||
Sbjct: 3039 agggcgatcagctagccctgaacccatttacgcta 3073
Score = 49 bits (125), Expect = 7e-06
Identities = 26/28 (93%)
Strand = Plus / Plus
Query: 3373 tacaaaaagtggtttccagaaatcttaa 3400
||||||| |||||||||| |||||||||
Sbjct: 3693 tacaaaaggtggtttccaaaaatcttaa 3720
Score = 47 bits (121), Expect = 2e-05
Identities = 28/31 (90%)
Strand = Plus / Plus
Query: 785 aggcaagaagcacaaaacaatggagagcctg 815
|||||||||||| |||| |||| ||||||||
Sbjct: 592 aggcaagaagcagaaaaaaatgcagagcctg 622
Score = 40 bits (103), Expect = 3e-03
Identities = 21/22 (95%)
Strand = Plus / Plus
Query: 3347 gcggaacatggagttaaaaata 3368
|||||||||||||| |||||||
Sbjct: 3670 gcggaacatggagtcaaaaata 3691
Score = 23 bits (60), Expect = 3e+02
Identities = 12/12 (100%)
Strand = Plus / Plus
Query: 755 gatgaatctttg 766
||||||||||||
Sbjct: 574 gatgaatctttg 585
Score = 21 bits (54), Expect = 1e+03
Identities = 11/11 (100%)
Strand = Plus / Plus
Query: 1034 tacaagttcaa 1044
|||||||||||
Sbjct: 874 tacaagttcaa 884
Score = 18 bits (45), Expect = 2e+04
Identities = 9/9 (100%)
Strand = Plus / Plus
Query: 2988 aagtgccta 2996
|||||||||
Sbjct: 3314 aagtgccta 3322
Score = 13 bits (35), Expect = 3e+05
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2972 tttgaag 2978
|||||||
Sbjct: 3285 tttgaag 3291 |