>AB090074|1|G1|22335397|BAC10420.1|Helicobacter_pylori_F15|+|1..3519|cagA|-|CagA
Length = 3519
Score = 2590 bits (6683), Expect = 0.0
Identities = 1440/1585 (91%)
Strand = Plus / Plus
Query: 1034 tacaagttcaaccagttaccgattcacaataacgctctgtcttctatgctaatggggagt 1093
||||||||||| |||||| ||| |||||||||||||| |||||| ||||||||||||||
Sbjct: 862 tacaagttcaatcagttattgatccacaataacgctctatcttctgtgctaatggggagt 921
Query: 1094 catagcagcatagaacctgaaaaagtttcattgttgtatggggataatggtggtcctgaa 1153
||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 922 catagcaacatagaacctgaaaaagtttcattattgtatggggataatggtggtcctgaa 981
Query: 1154 gctaggcatgattggaacgccaccgttggttataaaaaccaacaaggcaacaatgtggcc 1213
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 982 gctaggcatgattggaacgccaccgttggttataaaaaccaacaaggcaacaatgtggcc 1041
Query: 1214 acactcatcaatgcgcatcttaaaaacggcagcgggttagtcatagcgggtaatggaaat 1273
|||||||| |||||||||||||| ||||||||||||||| |||||| |||||||| ||||
Sbjct: 1042 acactcattaatgcgcatcttaataacggcagcgggttaatcatagtgggtaatgaaaat 1101
Query: 1274 gggattaacaaccctagcttctatctctacaaaacagaccaactcacaggcttggaacaa 1333
|||||||| |||||||||||||||||||||||| ||| ||||||||||| ||| |||||
Sbjct: 1102 gggattaaaaaccctagcttctatctctacaaagaagatcaactcacaggtttgaaacaa 1161
Query: 1334 gcgttgagtcaagaagagatccaaaacaaagtggatttcatggaacttcttgcacaaaac 1393
||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||
Sbjct: 1162 gcgttgagtcaagaagagatccaaaacaaagtggatttcatggaatttcttgtgcaaaac 1221
Query: 1394 aacgctagattagataacttgagcgaggaagagaaagaaaagttccaaactgagattgga 1453
||||||| ||||||||||||||||||| ||||||||||||| |||||||||||||||| |
Sbjct: 1222 aacgctaaattagataacttgagcgagaaagagaaagaaaaattccaaactgagattgaa 1281
Query: 1454 aatttccaaaaagaccctaaggcttatttagactccctagggaatgatcgcattgctttt 1513
||||||||||||||| |||||||||||||||| ||||||||||||||| ||||||||||
Sbjct: 1282 gatttccaaaaagaccgtaaggcttatttagacgccctagggaatgatcacattgctttt 1341
Query: 1514 gtttctaaaaaagacc-aaaagcatttagctttggttactgagtttggtaatggggaatt 1572
|||||||||||||||| |||| |||||||||||||||||||||||||||||||||||| |
Sbjct: 1342 gtttctaaaaaagacccaaaa-catttagctttggttactgagtttggtaatggggaagt 1400
Query: 1573 gagctatactctcaaagattatgggaaaaaacaagatagagctttagatagggagacaaa 1632
|||||||||||||||||||||||||||||||||||||| |||||||||| ||||| |||
Sbjct: 1401 gagctatactctcaaagattatgggaaaaaacaagataaagctttagatggggaggtaaa 1460
Query: 1633 aaccactcttcaaggtaacctaaagcatgatggcgtgatgtttgtcaattattccaattt 1692
||||||||||||||||| |||||| |||||||| |||||||||| |||||||||||||
Sbjct: 1461 aaccactcttcaaggtagcctaaaatatgatggcatgatgtttgttgattattccaattt 1520
Query: 1693 caaatacaccaacgcctccaagagtcctgatgagggtataggcgctacgaatggcgtttc 1752
||||||||||||||| |||||||||||| || |||| | ||||||||||||||||||||
Sbjct: 1521 caaatacaccaacgcttccaagagtcctaataagggcgtgggcgctacgaatggcgtttc 1580
Query: 1753 ccatttggaagcaaattttagcaaggtggctgtctttaatttgcctgatttaaatggtct 1812
||||||||||||||||||||||||||| |||||||||||||||||| |||||||| |||
Sbjct: 1581 ccatttggaagcaaattttagcaaggtagctgtctttaatttgcctaatttaaataatct 1640
Query: 1813 cgctatctctagttttgcaaggcggaatttagaggataaactgatcgctaaaggattgcc 1872
||||||| ||| || | |||||| ||||||| |||||| || |||||||||||| |
Sbjct: 1641 cgctatcactaattatataaggcgagatttagaagataaattgtgggctaaaggattgtc 1700
Query: 1873 cccaaaagacgctaataagatcatcaaagactttttgaacagcaacaaggaattgcttga 1932
|| | |||| |||||||| |||||||||||||||||||||||||||| ||| || |||
Sbjct: 1701 ccgacaagaatctaataagctcatcaaagactttttgaacagcaacaaagaaatggttgg 1760
Query: 1933 aaaagctttagacttcaataaagctgtagctgaagctaaaaatacaggcaattatgacgg 1992
||||| || | |||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 1761 aaaagtttcaaacttcaataaagctgtagctgaagctaaaaatacaggcaattatgatgg 1820
Query: 1993 agtgaaaaaagctcaaaaagatcttgaaaaatctataaggaaacgagagcgtttagagca 2052
||||||||||||||| |||||||||||||||||| ||||||||||||||| ||||||| |
Sbjct: 1821 agtgaaaaaagctcagaaagatcttgaaaaatctctaaggaaacgagagcatttagagaa 1880
Query: 2053 agaaataacgaaaaaatttgagaacaagagcggcaacaaaaataaaatggaagcgaaagt 2112
|||| | |||||||||| |||| || | | ||||||||||| |||||||| ||||
Sbjct: 1881 agaagtggcgaaaaaattggagagcagaaatgacaacaaaaatagaatggaagtaaaagc 1940
Query: 2113 tcaagctaacagccaaaaagatgggatttttaagcttatcaatgaagaggctcataagga 2172
|||||||||||||||||||||| ||||||| ||||||||| |||||||| ||||||
Sbjct: 1941 tcaagctaacagccaaaaagataagatttttgcacttatcaatcaagaggctagtaagga 2000
Query: 2173 agcaagaatcgccgcttacgctcagaatcttaaaggcatcaggagggaattgtttgataa 2232
||||||| ||||||| || || ||||||||||||||||||||| ||||||| ||||||
Sbjct: 2001 agcaagagcggccgctttcgatccgaatcttaaaggcatcaggagcgaattgtctgataa 2060
Query: 2233 agttaaaaatctcaacaagaatttgaaagactttgataaatcttttgatgcgctcaaaag 2292
| || ||||| |||||||||||||||||||||||| ||||||||||||| |||||||
Sbjct: 2061 acttgaaaatatcaacaagaatttgaaagactttggcaaatcttttgatgaactcaaaaa 2120
Query: 2293 tggcaaaaataaggatttcagcaaggcagaagaaacgctaaaagcccttgaaag-ctcgg 2351
| ||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||
Sbjct: 2121 tagcaaaaataaggatttcagcaaggcagaagaaacgctaaaagccctt-aaagactcgg 2179
Query: 2352 tgaaagatttgggtatcaatccagaatggatttcaaaagttgaaaaccttaatgcagctt 2411
|||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 2180 tgaaagatttaggtatcaatccagaatggatttcaaaaattgaaaaccttaatgcagctt 2239
Query: 2412 tgaatgaattcaaaaatggcaaaaataaggatttcagcaaggtaacacaagcaaaaagcg 2471
||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2240 tgaatgatttcaaaaatagcaaaaataaggatttcagcaaggtaacacaagcaaaaagcg 2299
Query: 2472 accttgaaaattccattaaggatgtgctcatcaatcaagagataacggataaagttgaca 2531
|||||||||||||||||||||||||| |||| |||||| |||||||||||||||||||||
Sbjct: 2300 accttgaaaattccattaaggatgtgatcattaatcaaaagataacggataaagttgaca 2359
Query: 2532 atctcaatcaggctgtattaagggctaaagcgataggcgattttagtggggtagagcaag 2591
|||||||||||||||||||| | ||||| | | |||| |||| ||| |||||||||||
Sbjct: 2360 atctcaatcaggctgtattagagactaaatcaacaggcaatttcagtaaggtagagcaag 2419
Query: 2592 agctagccaaactcaaaagcttctc 2616
|||||| ||||||||||||| ||
Sbjct: 2420 ccctagccgaactcaaaagcttgtc 2444
Score = 862 bits (2224), Expect = e-251
Identities = 468/504 (93%)
Strand = Plus / Plus
Query: 70 caacaatttatcaataatcttcaagtggcttttattaaacttgatagtgctgtcgcttca 129
|||| |||||||||||||||||||||||||||||||||| |||||| ||||||||||||
Sbjct: 58 caacgatttatcaataatcttcaagtggcttttattaaagttgataacgctgtcgcttca 117
Query: 130 tttgatcccgatcaaaaaccaatcgttgataagaacgatagggataacaggcaagctttt 189
|||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 118 tttgatcctgatcaaaaaccaatcgttgataagaatgatagggataacaggcaagctttt 177
Query: 190 aatgtaatctcgcaattaagggaagaatacgccaataaagcgatcaaaaatcccaccaaa 249
| |||||||||| ||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 178 gagaaaatctcgcaactaagggaagaatacgccaataaagcgatcaaaaatcctaccaaa 237
Query: 250 aagaatcagtatttttcagactttatcgataaaagcaatgatttgatcaacaaaaacgat 309
||||||||||||||||||||||||||| |||| || |||||||||||||||||| || ||
Sbjct: 238 aagaatcagtatttttcagactttatcaataagagtaatgatttgatcaacaaagacaat 297
Query: 310 ctcattgatacagattcttccacaaagagctttgaaaaatttggggctcagcgttaccaa 369
||||||| | |||||||||| | |||||||| |||||||||| |||||||||||||
Sbjct: 298 ctcattgctgtagattcttccgtagagagctttcggaaatttggggatcagcgttaccaa 357
Query: 370 atttttatgaattgggtgtcccatcaaaaagatccgtctaaaatcaacacccaaaaaatc 429
||||||| || ||||||||||| ||||||||||||||||||||||||||||||| |||||
Sbjct: 358 atttttacgagttgggtgtcccttcaaaaagatccgtctaaaatcaacacccaacaaatc 417
Query: 430 cgagattttatggaaaatatcatacaaccccctatctctgatgataaagaaaaagcggag 489
| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 caaaattttatggaaaatatcatacaaccccctatctctgatgataaagaaaaagcggag 477
Query: 490 tttttgaggtctgccaaacaatcttttgcaggaattatcatagggaaccaaacccgatcg 549
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 478 tttttgaggtctgccaaacaatcttttgcaggaattatcatagggaaccaaatccgatcg 537
Query: 550 gatgaaaaattcatgggcgttttt 573
||| |||||||||||||||| |||
Sbjct: 538 gatcaaaaattcatgggcgtgttt 561
Score = 585 bits (1509), Expect = e-167
Identities = 328/366 (90%)
Strand = Plus / Plus
Query: 3006 ctagttcgcaagcgaaattggacaattacgctactaacagccacacacgcattaatagca 3065
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3122 ctagtttgcaagcgaaattggacaattacgctactaacagccacacacgcattaatagca 3181
Query: 3066 atgtcaaaaatggaacaatcaatgaaaaagcgatcggcatgctaacgcaaaaaaaccctg 3125
||||| ||| |||| ||||||||||||| |||| ||||||||| ||||||||||||||||
Sbjct: 3182 atgtccaaagtggagcaatcaatgaaaaggcgaccggcatgctgacgcaaaaaaaccctg 3241
Query: 3126 agtggctcaagcttgtgaatgataagatagttgcgcataatgtgggaagcgctcctttgt 3185
||||||||||||| |||||||||||||||||||| ||||||||||||||||||| |||||
Sbjct: 3242 agtggctcaagctcgtgaatgataagatagttgcacataatgtgggaagcgctcatttgt 3301
Query: 3186 caggttatgataaaattggattcaaccaaaagaatatgaaaggttattctgattcgttca 3245
||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 3302 cagagtatgataaaattggattcaaccaaaagaatatgaaagattattctgattcgttca 3361
Query: 3246 ggttttccaccaagttgagcaatgccgtaaaaaacattaagtctgactttaagcaacttt 3305
||||||||||||||||| ||||||||||||| ||||||||||| |||| |||| |||
Sbjct: 3362 agttttccaccaagttgaacaatgccgtaaaagacattaagtctagctttgtgcaatttt 3421
Query: 3306 taaccgattgcatttctgcaggaacttacagcccgaagaaagc------ggaacatggag 3359
||||| || ||||| ||||| |||||||| || |||||| |||||||||||
Sbjct: 3422 taaccaatacattttctacaggatcttacagcttgatgaaagcaaatgtggaacatggag 3481
Query: 3360 ttaaaa 3365
| ||||
Sbjct: 3482 tcaaaa 3487
Score = 373 bits (963), Expect = e-103
Identities = 203/217 (94%)
Strand = Plus / Plus
Query: 817 tggggattggcttgatatttttttatcgtttgtatttaacaaagaacaatcttctgatct 876
||||||||||||||||||||||||||| ||||| ||||||||| |||||||||| |||||
Sbjct: 615 tggggattggcttgatatttttttatcatttgtgtttaacaaaaaacaatcttccgatct 674
Query: 877 caaagaaacgctcaatcaagagccaaggcctcatgttgaacaaaatgtagcctctacccc 936
||||||||||||||||||||||||||||||| || ||||||||||| ||||| ||||| |
Sbjct: 675 caaagaaacgctcaatcaagagccaaggcctgattttgaacaaaatttagccactaccac 734
Query: 937 cacccacatacaaggcttaccgcctgaagctagggatttgcttgatgaaaggggtgattt 996
|||| |||||||||||||||||||||||||||| ||||||||||||||||||||| ||||
Sbjct: 735 caccgacatacaaggcttaccgcctgaagctagagatttgcttgatgaaaggggtaattt 794
Query: 997 ttctaaattcactcttggtgatatggaaatgttggat 1033
|| ||||||||||||||||||| ||||||||||||||
Sbjct: 795 ttttaaattcactcttggtgatgtggaaatgttggat 831
Score = 245 bits (631), Expect = 7e-65
Identities = 137/155 (88%)
Strand = Plus / Plus
Query: 2803 agttgatgatctcagtaaggtagggctttcaagggagcaagaattgaatgagaaaattgg 2862
|||||||||||||||||| ||||||||||||||||| |||||||||| | | ||||||
Sbjct: 2928 agttgatgatctcagtaaagtagggctttcaagggaacaagaattgactcgtagaattgg 2987
Query: 2863 caatctcaatcaggcagtgtcagaagctaaagcaggttcttttggcaacctagaacaaat 2922
| ||||||||||||| || |||||||||||| ||||| ||||| ||||||||||||||
Sbjct: 2988 cgatctcaatcaggcggtatcagaagctaaaacaggtcattttgacaacctagaacaaaa 3047
Query: 2923 gatggatggactcaaagattctacaaaaaagaatg 2957
||| |||| ||||||||||||||| ||||||||||
Sbjct: 3048 gatagatgaactcaaagattctacgaaaaagaatg 3082
Score = 76 bits (197), Expect = 3e-14
Identities = 44/49 (90%)
Strand = Plus / Plus
Query: 767 gatgaatctttgaaagagaggcaagaagcacaaaacaatggagagcctg 815
||||||| ||||||||| |||||||||||| |||| |||| ||||||||
Sbjct: 562 gatgaatttttgaaagaaaggcaagaagcagaaaaaaatgcagagcctg 610
Score = 49 bits (125), Expect = 7e-06
Identities = 26/28 (93%)
Strand = Plus / Plus
Query: 3373 tacaaaaagtggtttccagaaatcttaa 3400
||||||| |||||||||| |||||||||
Sbjct: 3492 tacaaaaggtggtttccaaaaatcttaa 3519
Score = 39 bits (101), Expect = 5e-03
Identities = 21/22 (95%)
Strand = Plus / Plus
Query: 2733 ggcaatcagatagccctgaacc 2754
||||||||| ||||||||||||
Sbjct: 2840 ggcaatcagctagccctgaacc 2861
Score = 18 bits (45), Expect = 2e+04
Identities = 9/9 (100%)
Strand = Plus / Plus
Query: 2988 aagtgccta 2996
|||||||||
Sbjct: 3113 aagtgccta 3121
Score = 16 bits (41), Expect = 5e+04
Identities = 14/18 (78%)
Strand = Plus / Plus
Query: 2629 attggatc----aaaaaa 2642
|||||||| ||||||
Sbjct: 2445 attggatcttggaaaaaa 2462
Score = 13 bits (35), Expect = 3e+05
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2972 tttgaag 2978
|||||||
Sbjct: 3084 tttgaag 3090 |