>AB090073|1|G1|22335393|BAC10419.1|Helicobacter_pylori_F13|+|1..3528|cagA|-|CagA
Length = 3528
Score = 2472 bits (6380), Expect = 0.0
Identities = 1370/1494 (92%)
Strand = Plus / Plus
Query: 1058 cacaataacgctctgtcttctatgctaatggggagtcatagcagcatagaacctgaaaaa 1117
|||||||||||| | |||||| ||||||||||||||||||||| ||||||||||||||||
Sbjct: 898 cacaataacgctttatcttctgtgctaatggggagtcatagcaacatagaacctgaaaaa 957
Query: 1118 gtttcattgttgtatggggataatggtggtcctgaagctaggcatgattggaacgccacc 1177
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 958 gtttcattattgtatggggataatggtggtcctgaagctaggcatgattggaacgccacc 1017
Query: 1178 gttggttataaaaaccaacaaggcaacaatgtggccacactcatcaatgcgcatcttaaa 1237
||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 1018 gttggctataaaaaccaacaaggcgacaatgtggccacactcatcaatgcgcatcttaat 1077
Query: 1238 aacggcagcgggttagtcatagcgggtaatggaaatgggattaacaaccctagcttctat 1297
||||| ||||||||||||||||||||||||| |||||||||||| || |||||||||||
Sbjct: 1078 aacggtagcgggttagtcatagcgggtaatgaaaatgggattaaaaatcctagcttctac 1137
Query: 1298 ctctacaaaacagaccaactcacaggcttggaacaagcgttgagtcaagaagagatccaa 1357
||||| ||| ||| |||||||| |||||| |||||||||||||||||||||||||||||
Sbjct: 1138 ctctataaagaagatcaactcaccggcttgaaacaagcgttgagtcaagaagagatccaa 1197
Query: 1358 aacaaagtggatttcatggaacttcttgcacaaaacaacgctagattagataacttgagc 1417
||||||||||||||||||||| |||||||| |||||||||||| |||||| |||||||||
Sbjct: 1198 aacaaagtggatttcatggaatttcttgcaaaaaacaacgctaaattagacaacttgagc 1257
Query: 1418 gaggaagagaaagaaaagttccaaactgagattggaaatttccaaaaagaccctaaggct 1477
||| ||||||||||||| |||||||||||||||| ||||||||||||||||| |||||||
Sbjct: 1258 gagaaagagaaagaaaaattccaaactgagattgaaaatttccaaaaagaccgtaaggct 1317
Query: 1478 tatttagactccctagggaatgatcgcattgcttttgtttctaaaaaagacc-aaaagca 1536
||||||||| | ||||||||||||| |||||||||||||||||||||||||| |||| ||
Sbjct: 1318 tatttagacgctctagggaatgatcacattgcttttgtttctaaaaaagacccaaaa-ca 1376
Query: 1537 tttagctttggttactgagtttggtaatggggaattgagctatactctcaaagattatgg 1596
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 1377 tttagctttggttactgagtttggtaatggggaagtgagctatactctcaaagattatgg 1436
Query: 1597 gaaaaaacaagatagagctttagatagggagacaaaaaccactcttcaaggtaacctaaa 1656
|||||||||||||| |||||||||| ||||||||||||||||||||||||||| ||||||
Sbjct: 1437 gaaaaaacaagataaagctttagatggggagacaaaaaccactcttcaaggtagcctaaa 1496
Query: 1657 gcatgatggcgtgatgtttgtcaattattccaatttcaaatacaccaacgcctccaagag 1716
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 1497 atatgatggcgtgatgtttgttgattattccaatttcaaatacaccaacgcctccaagag 1556
Query: 1717 tcctgatgagggtataggcgctacgaatggcgtttcccatttggaagcaaattttagcaa 1776
|||| || ||||| ||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 1557 tcctaataagggtttaggcgctacgaatggcgtttcccatttggaagtaaattttagcaa 1616
Query: 1777 ggtggctgtctttaatttgcctgatttaaatggtctcgctatctctagttttgcaaggcg 1836
||| |||||||||||||||||| |||||||| |||||||||| ||| || | ||||||
Sbjct: 1617 ggtagctgtctttaatttgcctaatttaaataatctcgctatcactaattatataaggcg 1676
Query: 1837 gaatttagaggataaactgatcgctaaaggattgcccccaaaagacgctaataagatcat 1896
||||||| |||||| || |||||||||||| ||||| |||| ||||||||| ||||
Sbjct: 1677 agatttagaagataaattgtgggctaaaggattgtccccacaagaagctaataagctcat 1736
Query: 1897 caaagactttttgaacagcaacaaggaattgcttgaaaaagctttagacttcaataaagc 1956
|||||||||||| ||||||||||| |||||||||| ||||| || | |||||||||||||
Sbjct: 1737 caaagactttttaaacagcaacaaagaattgcttggaaaagtttcaaacttcaataaagc 1796
Query: 1957 tgtagctgaagctaaaaatacaggcaattatgacggagtgaaaaaagctcaaaaagatct 2016
|||||||||||||||||| |||||||||||||| | ||||||||||||||| ||||||||
Sbjct: 1797 tgtagctgaagctaaaaacacaggcaattatgatgaagtgaaaaaagctcagaaagatct 1856
Query: 2017 tgaaaaatctataaggaaacgagagcgtttagagcaagaaataacgaaaaaatttgagaa 2076
|||||||||| ||||||||||||||| ||||||| ||||| || |||||||||| ||||
Sbjct: 1857 tgaaaaatctctaaggaaacgagagcatttagagaaagaagtagcgaaaaaattggagag 1916
Query: 2077 caagagcggcaacaaaaataaaatggaagcgaaagttcaagctaacagccaaaaagatgg 2136
|| | || ||||||||||| ||||||||| |||| ||||||||||||||||||||||
Sbjct: 1917 cagaaacgacaacaaaaatagaatggaagcaaaagctcaagctaacagccaaaaagataa 1976
Query: 2137 gatttttaagcttatcaatgaagaggctcataaggaagcaagaatcgccgcttacgctca 2196
||||||| | | |||||| |||||||| ||||||||||||| |||||| || ||
Sbjct: 1977 gatttttgcgttgatcaatcaagaggctagtaaggaagcaagagcgaccgctttcgatcc 2036
Query: 2197 gaatcttaaaggcatcaggagggaattgtttgataaagttaaaaatctcaacaagaattt 2256
|||||||||||||||||||| ||||||| ||||||| || ||||| |||||||||||||
Sbjct: 2037 gaatcttaaaggcatcaggatcgaattgtctgataaacttgaaaatatcaacaagaattt 2096
Query: 2257 gaaagactttgataaatcttttgatgcgctcaaaagtggcaaaaataaggatttcagcaa 2316
||||||||||| ||||||||||||| ||||||| |||||||||||| |||||||||||
Sbjct: 2097 gaaagactttggcaaatcttttgatgaactcaaaaatggcaaaaataatgatttcagcaa 2156
Query: 2317 ggcagaagaaacgctaaaagcccttgaaag-ctcggtgaaagatttgggtatcaatccag 2375
||||||||||||||||||||||||| |||| ||||||||||||||| |||||||||||||
Sbjct: 2157 ggcagaagaaacgctaaaagccctt-aaagactcggtgaaagatttaggtatcaatccag 2215
Query: 2376 aatggatttcaaaagttgaaaaccttaatgcagctttgaatgaattcaaaaatggcaaaa 2435
|||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 2216 aatggatttcaaaaattgaaaaccttaatgcagctttgaatgatttcaaaaatggcaaaa 2275
Query: 2436 ataaggatttcagcaaggtaacacaagcaaaaagcgaccttgaaaattccattaaggatg 2495
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2276 ataaggatttcagcaaggtaacacaagcaaaaagcgaccttgaaaattccattaaggatg 2335
Query: 2496 tgctcatcaatcaagagataacggataaagttgacaatctcaatcaggctgtat 2549
|| |||| |||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 2336 tgatcattaatcaaaagataacggataaagttgacaatctcaatcaggctgtat 2389
Score = 957 bits (2470), Expect = e-279
Identities = 524/573 (91%)
Strand = Plus / Plus
Query: 1 atggctaacgaaaccatcaatcaaacaaaaaaaccagatcaaacaccaagccaaacggct 60
||| |||||||||| || ||||||||| || ||| ||||||||||||| |||||||| |
Sbjct: 1 atgactaacgaaactattgatcaaacaacaacaccggatcaaacaccaaaccaaacggat 60
Query: 61 tttaatccacaacaatttatcaataatcttcaagtggcttttattaaacttgatagtgct 120
||| ||| |||| ||||||||||||||||||||| |||||||||||| |||||| |||
Sbjct: 61 tttgttccgcaacgatttatcaataatcttcaagtagcttttattaaagttgataacgct 120
Query: 121 gtcgcttcatttgatcccgatcaaaaaccaatcgttgataagaacgatagggataacagg 180
||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct: 121 gtcgcttcatttgatcctgatcaaaaaccaatcgttgataagaatgatagggataacagg 180
Query: 181 caagcttttaatgtaatctcgcaattaagggaagaatacgccaataaagcgatcaaaaat 240
||||||||| | |||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 181 caagcttttgagaaaatctcgcaactaagggaagaatacgccaataaagcgatcaaaaat 240
Query: 241 cccaccaaaaagaatcagtatttttcagactttatcgataaaagcaatgatttgatcaac 300
|| |||||||||||||||||||||||||||||||| |||| ||||||||||||||||||
Sbjct: 241 cctgccaaaaagaatcagtatttttcagactttatcaataagagcaatgatttgatcaac 300
Query: 301 aaaaacgatctcattgatacagattcttccacaaagagctttgaaaaatttggggctcag 360
||| || ||||||||| | |||||||||| | |||||||| |||||||||| ||||
Sbjct: 301 aaagacaatctcattgctgtagattcttccgtagagagctttcggaaatttggggatcag 360
Query: 361 cgttaccaaatttttatgaattgggtgtcccatcaaaaagatccgtctaaaatcaacacc 420
|||||||||||||||| || ||||||||||| ||||||||||||||||||||||||||||
Sbjct: 361 cgttaccaaatttttacgagttgggtgtcccttcaaaaagatccgtctaaaatcaacacc 420
Query: 421 caaaaaatccgagattttatggaaaatatcatacaaccccctatctctgatgataaagaa 480
||| |||||| |||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 421 caacaaatccaagattttatggaaaatatcatacaaccccctatctctgatgacaaagaa 480
Query: 481 aaagcggagtttttgaggtctgccaaacaatcttttgcaggaattatcatagggaaccaa 540
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 481 aaagcggagtttttgaggtctgccaaacaatcttttgcaggaattatcatagggaatcaa 540
Query: 541 acccgatcggatgaaaaattcatgggcgttttt 573
| ||||||||||||||||||||||||||| |||
Sbjct: 541 atccgatcggatgaaaaattcatgggcgtgttt 573
Score = 553 bits (1426), Expect = e-157
Identities = 304/332 (92%)
Strand = Plus / Plus
Query: 3006 ctagttcgcaagcgaaattggacaattacgctactaacagccacacacgcattaatagca 3065
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3128 ctagtttgcaagcgaaattggacaattacgctactaacagccacacacgcattaatagca 3187
Query: 3066 atgtcaaaaatggaacaatcaatgaaaaagcgatcggcatgctaacgcaaaaaaaccctg 3125
||||| ||| ||||||||||||||||||||||| ||||||||| ||||||||||||||||
Sbjct: 3188 atgtccaaactggaacaatcaatgaaaaagcgaccggcatgctgacgcaaaaaaaccctg 3247
Query: 3126 agtggctcaagcttgtgaatgataagatagttgcgcataatgtgggaagcgctcctttgt 3185
||||||||||||| |||||||||||||||||||| |||||||||||||| |||| |||||
Sbjct: 3248 agtggctcaagctcgtgaatgataagatagttgcacataatgtgggaagtgctcatttgt 3307
Query: 3186 caggttatgataaaattggattcaaccaaaagaatatgaaaggttattctgattcgttca 3245
||| |||||||||||||||||||| |||||||||||||||| |||||||||||||||||
Sbjct: 3308 cagagtatgataaaattggattcaatcaaaagaatatgaaagattattctgattcgttca 3367
Query: 3246 ggttttccaccaagttgagcaatgccgtaaaaaacattaagtctgactttaagcaacttt 3305
||||||||||||||||| ||||||||||||| ||||||||||| |||| |||| |||
Sbjct: 3368 agttttccaccaagttgaacaatgccgtaaaagacattaagtctagctttgtgcaatttt 3427
Query: 3306 taaccgattgcatttctgcaggaacttacagc 3337
||||| || ||||| ||||| ||||||||
Sbjct: 3428 taaccaatacattttctacaggatcttacagc 3459
Score = 403 bits (1039), Expect = e-112
Identities = 229/252 (91%)
Strand = Plus / Plus
Query: 785 aggcaagaagcacaaaacaatggagagcct---gttggggattggcttgatattttttta 841
|||||||||||| |||| |||| ||||||| | |||||||||||||||||||||||||
Sbjct: 592 aggcaagaagcagaaaaaaatgcagagcctactggtggggattggcttgatattttttta 651
Query: 842 tcgtttgtatttaacaaagaacaatcttctgatctcaaagaaacgctcaatcaagagcca 901
|| ||||| ||||||||| |||||||||| ||||||||||||||||||||||||||||||
Sbjct: 652 tcatttgtgtttaacaaaaaacaatcttccgatctcaaagaaacgctcaatcaagagcca 711
Query: 902 aggcctcatgttgaacaaaatgtagcctctacccccacccacatacaaggcttaccgcct 961
|||||| || ||||||||||| ||||| ||||| ||||| |||||||||||||||| |||
Sbjct: 712 aggcctgattttgaacaaaatttagccactaccaccaccgacatacaaggcttaccacct 771
Query: 962 gaagctagggatttgcttgatgaaaggggtgatttttctaaattcactcttggtgatatg 1021
|||||||| ||||||||||||||||||||| |||||| ||||||||||||||||||| ||
Sbjct: 772 gaagctagagatttgcttgatgaaaggggtaatttttttaaattcactcttggtgatgtg 831
Query: 1022 gaaatgttggat 1033
|| |||||||||
Sbjct: 832 gagatgttggat 843
Score = 245 bits (631), Expect = 7e-65
Identities = 137/155 (88%)
Strand = Plus / Plus
Query: 2803 agttgatgatctcagtaaggtagggctttcaagggagcaagaattgaatgagaaaattgg 2862
|||| ||||||||||||| ||||||||||||||||| |||||||||| | | ||||||
Sbjct: 2934 agttaatgatctcagtaaagtagggctttcaagggaacaagaattgactcgtagaattgg 2993
Query: 2863 caatctcaatcaggcagtgtcagaagctaaagcaggttcttttggcaacctagaacaaat 2922
| ||||||||||||| || |||||||||||| ||||| ||||||||||||||||||||
Sbjct: 2994 cgatctcaatcaggcggtatcagaagctaaaacaggtcattttggcaacctagaacaaaa 3053
Query: 2923 gatggatggactcaaagattctacaaaaaagaatg 2957
||| |||| ||||||||||||||| ||||||||||
Sbjct: 3054 gatagatgaactcaaagattctacgaaaaagaatg 3088
Score = 94 bits (241), Expect = 2e-19
Identities = 50/54 (93%)
Strand = Plus / Plus
Query: 3347 gcggaacatggagttaaaaatattaatacaaaaagtggtttccagaaatcttaa 3400
|||||||||||||| ||||||| |||||||||| |||||||||| |||||||||
Sbjct: 3475 gcggaacatggagtcaaaaatactaatacaaaaggtggtttccaaaaatcttaa 3528
Score = 52 bits (135), Expect = 5e-07
Identities = 28/29 (97%)
Strand = Plus / Plus
Query: 2737 atcagatagccctgaacccatttacgcta 2765
||||| |||||||||||||||||||||||
Sbjct: 2850 atcagctagccctgaacccatttacgcta 2878
Score = 29 bits (74), Expect = 7e+00
Identities = 15/16 (94%)
Strand = Plus / Plus
Query: 2721 tcagtaaggtagggca 2736
|||||||||||| |||
Sbjct: 2414 tcagtaaggtagagca 2429
Score = 23 bits (60), Expect = 3e+02
Identities = 12/12 (100%)
Strand = Plus / Plus
Query: 755 gatgaatctttg 766
||||||||||||
Sbjct: 574 gatgaatctttg 585
Score = 21 bits (54), Expect = 1e+03
Identities = 11/11 (100%)
Strand = Plus / Plus
Query: 1034 tacaagttcaa 1044
|||||||||||
Sbjct: 874 tacaagttcaa 884
Score = 18 bits (45), Expect = 2e+04
Identities = 9/9 (100%)
Strand = Plus / Plus
Query: 2988 aagtgccta 2996
|||||||||
Sbjct: 3119 aagtgccta 3127
Score = 16 bits (40), Expect = 6e+04
Identities = 8/8 (100%)
Strand = Plus / Plus
Query: 2782 ccctttga 2789
||||||||
Sbjct: 2913 ccctttga 2920
Score = 13 bits (35), Expect = 3e+05
Identities = 7/7 (100%)
Strand = Plus / Plus
Query: 2972 tttgaag 2978
|||||||
Sbjct: 3090 tttgaag 3096 |