Name : gspD (APECO1_3458)
Accession : YP_854407.1
PAI name : PAI I APEC-O1
PAI accession : NC_008563_P4
Strain : Escherichia coli 042
Virulence or Resistance: Not determined
Product : type II secretion protein GspD
Function : -
Note : -
Homologs in the searched genomes : 209 hits ( 207 protein-level, 2 DNA-level )
Publication :
-Johnson,T.J. and Nolan,L.K., "Direct Submission", Submitted (14-SEP-2006) Veterinary Microbiology and Preventive Medicine, Iowa State University, 1802 Elwood Drive, VMRI 2, Ames, IA 50011, USA.
-Johnson,T.J., Kariyawasam,S., Wannemuehler,Y., Mangiamele,P., Johnson,S.J., Doetkott,C., Skyberg,J.A., Lynne,A.M., Johnson,J.R. and Nolan,L.K., "The genome sequence of avian pathogenic Escherichia coli strain O1:K1:H7 shares strong similarities with human extraintestinal pathogenic E. coli genomes", J. Bacteriol. 189 (8), 3228-3236 (2007) PUBMED 17293413 REMARK Erratum:[J Bacteriol. 2007 Jun;189(12):4554].
-Johnson,T.J., Kariyawasam,S., Wannemuehler,Y., Mangiamele,P., Johnson,S.J., Doetkott,C., Skyberg,J.A., Lynne,A.M., Johnson,J.R. and Nolan,L.K., "Direct Submission", Submitted (08-NOV-2006) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA.
| DNA sequence : | |
GTGTTTTGGCGTGATATGACGTTGTCTATCTGGCGTAAGAAGACAACTGGCCTCAAAACAAAAAAGCGTTTACTGCCGCT
GATGCTGGCAGCGGCATTGTGTAGTTCACCGGTCTGGGAGGAAGAAGCCACTTTCACCGCTAATTTTAAAGATACCGACC
TGAAATCGTTCATCGAAACCGTCGGCGCTAACCTTAATAAAACCATCATTATGGGGCCGGGCGTTCAGGGGAAAGTGAGT
ATTCGCACTATGACTCCGCTCAATGAACGCCAGTATTACCAGTTATTCCTTAACCTGCTGGAAGCACAGGGGTATGCGGT
CGTACCGATGGAAAACGACGTGCTGAAGGTGGTGAAATCAAGCGCCGCGAAAGTCGAGCCGCTGCCGCTGGTCGGTGAAG
GCAGTGACAACTACGCGGGCGATGAAATGGTCACCAAAGTCGTGCCGGTACGCAATGTGTCGGTACGCGAGCTGGCACCG
ATTCTGCGCCAGATGATTGACAGCGCAGGCTCAGGCAACGTTGTTAATTACGATCCCTCCAACGTGATTATGCTTACCGG
ACGCGCCTCCGTTGTGGAGCGCCTGACGGAAGTGATCCAGCGCGTGGATCACGCGGGTAATCGCACCGAAGAGGTGATCC
CGCTGGATAACGCCTCAGCCTCGGAAATTGCCCGCGTGCTGGAAAGCCTGACCAAAAACAGCGGCGAGAACCAGCCAGCA
ACGCTGAAATCTCAAATTGTCGCCGATGAACGCACCAACAGCGTGATTGTCAGTGGTGACCCCGCCACGCGAGACAAAAT
GCGCCGTCTGATCCGTCGGCTGGATTCAGAAATGGAGCGCAGCGGCAACAGCCAGGTGTTCTATCTCAAATACAGCAAAG
CCGAAGATCTGGTCGATGTGCTGAAGCAGGTCAGCGGTACGCTCACGGCGGCTAAAGAAGAGGCGGAAGGCACAGTTGGT
AGCGGGCGTGAGGTTGTCTCCATCGCCGCCAGCAAACACAGTAATGCCCTGATTGTTACTGCGCCGCAGGACATTATGCA
GTCGCTGCAAAGCGTGATTGAACAACTGGATATTCGCCGTGCTCAGGTGCATGTCGAGGCGTTAATCGTGGAAGTTGCCG
AAGGCAGCAATATCAACTTCGGCGTGCAGTGGGGGTCAAAAGATGCCGGATTAATGCAGTTTGCCAACGGTACGCAAATC
CCTATTGGTACGCTGGGGGCAGCGATTTCTGCAGCCAAGCCGCAGAAAGGTTCCACGGTGATCAGCGAAAACGGTGCTAC
CACCATAAATCCGGATACTAACGGCGATCTCTCCACGCTCGCTCAGCTTCTTTCTGGCTTTAGCGGTACGGCGGTTGGCG
TGGTGAAAGGCGACTGGATGGCGCTGGTACAGGCGGTCAAAAACGACTCCAGCTCGAACGTGCTCTCCACGCCGAGTATC
ACCACGCTGGACAACCAGGAAGCCTTCTTCATGGTGGGCCAGGACGTTCCGGTATTAACCGGCTCTACCGTTGGTTCCAA
TAACAGCAATCCTTTCAATACGGTAGAGAGGAAAAAAGTCGGCATCATGCTGAAAGTCACGCCGCAGATTAACGAAGGTA
ACGCGGTACAGATGGTGATTGAGCAGGAAGTCTCGAAAGTGGAAGGGCAGACCAGTCTCGATGTCGTGTTTGGCGAGCGC
AAACTGAAAACCACCGTGCTGGCTAACGATGGTGAGCTGATCGTGCTTGGCGGTCTGATGGACGACCAGGCGGGAGAAAG
CGTGGCGAAAGTGCCGCTGCTGGGCGATATCCCAGTGATTGGTAACCTGTTTAAATCGACGGCGGATAAAAAAGAAAAAC
GTAACCTGATGGTGTTTATCCGCCCGACCATTTTGCGTGACGGTATGGCGGCAGACGGCGTGTCGCAGCGCAAATATAAC
TACATGCGCGCTGAGCAAATCTACCGCGATGAGCAAGGCTTAAGCCTGATGCCGCACACCGCGCAGCCGATATTGCCAGC
GCAAAATCAGGCCTTACCGCCGGAAGTACGCGCGTTCCTCAATGCCGGGAGAACGCGTTAA
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| Protein sequence : | |
MFWRDMTLSIWRKKTTGLKTKKRLLPLMLAAALCSSPVWEEEATFTANFKDTDLKSFIETVGANLNKTIIMGPGVQGKVS
IRTMTPLNERQYYQLFLNLLEAQGYAVVPMENDVLKVVKSSAAKVEPLPLVGEGSDNYAGDEMVTKVVPVRNVSVRELAP
ILRQMIDSAGSGNVVNYDPSNVIMLTGRASVVERLTEVIQRVDHAGNRTEEVIPLDNASASEIARVLESLTKNSGENQPA
TLKSQIVADERTNSVIVSGDPATRDKMRRLIRRLDSEMERSGNSQVFYLKYSKAEDLVDVLKQVSGTLTAAKEEAEGTVG
SGREVVSIAASKHSNALIVTAPQDIMQSLQSVIEQLDIRRAQVHVEALIVEVAEGSNINFGVQWGSKDAGLMQFANGTQI
PIGTLGAAISAAKPQKGSTVISENGATTINPDTNGDLSTLAQLLSGFSGTAVGVVKGDWMALVQAVKNDSSSNVLSTPSI
TTLDNQEAFFMVGQDVPVLTGSTVGSNNSNPFNTVERKKVGIMLKVTPQINEGNAVQMVIEQEVSKVEGQTSLDVVFGER
KLKTTVLANDGELIVLGGLMDDQAGESVAKVPLLGDIPVIGNLFKSTADKKEKRNLMVFIRPTILRDGMAADGVSQRKYN
YMRAEQIYRDEQGLSLMPHTAQPILPAQNQALPPEVRAFLNAGRTR
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