Name : CPR_1082 (CPR_1082)
Accession : YP_698404.1
PAI name : Not named
PAI accession : NC_008262_P6
Strain : Clostridium perfringens ATCC 13124
Virulence or Resistance: Virulence
Product : bacteriocin ABC transporter ATP-binding/permease
Function : -
Note : identified by similarity to GB:AAB81307.1; match to protein family HMM PF00005; match to protein family HMM PF00664; match to protein family HMM PF03412; match to protein family HMM TIGR01193
Homologs in the searched genomes : 132 hits ( 132 protein-level )
Publication :
-Myers,G.S., Rasko,D.A., Cheung,J.K., Ravel,J., Seshadri,R., DeBoy,R.T., Ren,Q., Varga,J., Awad,M.M., Brinkac,L.M., Daugherty,S.C., Haft,D.H., Dodson,R.J., Madupu,R., Nelson,W.C., Rosovitz,M., Sullivan,S.A., Khouri,H.M., Dimitrov,G., Watkins,K.L., Mulligan, "Direct Submission", Submitted (06-APR-2006) The Institute for Genomic Research, 9712 Medical Center Dr, Rockville, MD 20850, USA.
-Myers,G.S., Rasko,D.A., Cheung,J.K., Ravel,J., Seshadri,R., DeBoy,R.T., Ren,Q., Varga,J., Awad,M.M., Brinkac,L.M., Daugherty,S.C., Haft,D.H., Dodson,R.J., Madupu,R., Nelson,W.C., Rosovitz,M.J., Sullivan,S.A., Khouri,H., Dimitrov,G.I., Watkins,K.L., Mullig, "Skewed genomic variability in strains of the toxigenic bacterial pathogen, Clostridium perfringens", Genome Res. 16 (8), 1031-1040 (2006) PUBMED 16825665.
-Myers,G.S., Rasko,D.A., Cheung,J.K., Ravel,J., Seshadri,R., DeBoy,R.T., Ren,Q., Varga,J., Awad,M.M., Brinkac,L.M., Daugherty,S.C., Haft,D.H., Dodson,R.J., Madupu,R., Nelson,W.C., Rosovitz,M.J., Sullivan,S.A., Khouri,H., Dimitrov,G.I., Watkins,K.L., Mullig, "Direct Submission", Submitted (28-JUL-2006) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA.
| DNA sequence : | |
ATGTATATTAATAGGTATAAGTGTATAAAACAACATGACTATAAGGATTGTGGATGTGCATGTTTAGCTACTATATGTAA
GCAATATGGATTAAAATTTCCAATATCTAAAATTAGAGAAGTAGCTGGAACAGATAAAGAGGGTACAAGTGCTTTAGGCG
TTATACAGGCTGCTGAAAAACTTGGATTTTCATCTAAAGGAGTTAAAGCTAATAAACCCGAAGATATATTTGGAGAAATT
CCACTTCCAGCTATAGCTCATGTTGTTATAGACAAGACAATGCTACATTATGTAGTTATACATAAAATTAGTAAAAAAGA
AATTATAGTTGCTGATCCAGCTAAAGGAATAGTTAAATATAAACCTAGTGACTTCTTTAATATTTGGACAGGAATCCTTT
TAATAATGACGCCGACCGCTGAATTTAAAAAAGGAAATGAAGTTAAAGGAGTATTCACTAGGTTTTTTGAACTATTAAAG
CCACAAAAAGGATTACTTTTTAACATATTTCTAGCTTCACTTCTTATAACGGCATTTGGAATAATAGGGTCCTTTTATTT
TAAATTTTTGTTGGATGACATAGTACCTAATAATTTAAGACAATCATTAACTATATTTTCTATAGGATTTATACTTTTAG
CAATATTTAAGGTTATTACAGAAGCTTTTAGAACACAACTTCTTATTCATTTAGGACAACGTTTAGATATACCATTAATG
TTAGGTTATTATGATCATGTAGTTAATCTTCCTATGAATTTCTTTGGTACAAGAGAAATTGGAGAGATTATATCAAGATT
TAATGATGCATCAAAGATAAGACAGGCTATATCAGGGGTTGCTCTTACTATGATGATTGATGTGATTTTGGTTATAGTCG
GAGGCGGAATTCTTTATTATCAAAGTTCATTACTATTTGGAATAACTATATTCCCTTTAATTTTATACGGAATAATTGTT
TTTGTATTTAAGAGTAATATAGAAAAAGTTAATAGAGAAACTATGGAAGGTAATGCTAAGTTAACATCATATTTAGTAGA
ATCTTTAAATGGAATAGAAACTATAAAAGCTTTTAATGCAGAAAGAGAAGTAAATTTAGAAACCGAAAAAAGATTTATAA
AGTTTATAAAAGCTATATTTAAAAATGAGTACATAAATAATATTCAAGTATCTTTAAAAAGCTTGGTAAAAGGAGTTTTT
GCTATAGTTATTCTATGGATTGGTACTGTTCAAGTTTTAAATGGAAAGATTTCCTTTGGTGAACTTTTAACTTTTAATGC
TCTACTAGCATATTTCTTAAGTCCAGTAGAAAATATAATAAATCTACAACCAACACTTCAAACGGCAGTTGTAGCAGCGG
AAAGATTAAGTGAAATATTAGATTTAGAACTTGAAAAGTCTGAGGAAGAATATAAAAAGATTATCCCTCAATCCTTAAAA
GGAAAAATAGAGTTTAAAAATGTTGACTTTAGATATGGGACTAGACAACTTATTTTAAAAAATATAAATATGACTATTAA
TAAAGGTGAAAGAATTGCACTAGTTGGAGAAAGTGGATCAGGTAAAACAACATTAGCTAAGTTATTACTTAATTTTTACC
AATGTGAAAAGGGTGAAATTATAGTAAATGATTATAATTTATTAGATATTAATGTTGAAGCTCTTAGAGATAAGATAGCA
TATATTTCTCAAGAAACATTTTTATTTAATGGAACTATAATAGAAAACTTAATGCTTGGAAATCCTTATTTAACGTATGA
AGAGATTATTGAAGCTTGTAAAAAGGCTCAAATACATGATTTTATAAATTCATTACCATTAAGGTATAACACATTAGTTG
AAGAAAATGGATCAAATTTCTCCGGAGGACAAAAGCAAAGATTATCTATTGCAAGAGCAATACTTAGAAAACCAGAGATT
CTTATAATGGATGAAGCTACAAGTAATCTTGATTCTATAACTGAAAAAGCTATCGAAAAAACCATCCATGAATTTAGTGA
AGGTATGACGACTATAATAATAGCTCATAGATTAAGCACTATTAAAAGGTGTGATAATATCTACATTTTAGAAAAGGGAG
AAATAAAAGAACAAGGCAATCATAAAGAATTATTAAATAAAAAGGGTAGATATTATAAGCTATGGAAAGAACAACTTCCA
GAAGTAGATAACATTGAAGAAGTTCAAGTTAAGGAGGTTGTTGAAGTTGAAATTTAA
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| Protein sequence : | |
MYINRYKCIKQHDYKDCGCACLATICKQYGLKFPISKIREVAGTDKEGTSALGVIQAAEKLGFSSKGVKANKPEDIFGEI
PLPAIAHVVIDKTMLHYVVIHKISKKEIIVADPAKGIVKYKPSDFFNIWTGILLIMTPTAEFKKGNEVKGVFTRFFELLK
PQKGLLFNIFLASLLITAFGIIGSFYFKFLLDDIVPNNLRQSLTIFSIGFILLAIFKVITEAFRTQLLIHLGQRLDIPLM
LGYYDHVVNLPMNFFGTREIGEIISRFNDASKIRQAISGVALTMMIDVILVIVGGGILYYQSSLLFGITIFPLILYGIIV
FVFKSNIEKVNRETMEGNAKLTSYLVESLNGIETIKAFNAEREVNLETEKRFIKFIKAIFKNEYINNIQVSLKSLVKGVF
AIVILWIGTVQVLNGKISFGELLTFNALLAYFLSPVENIINLQPTLQTAVVAAERLSEILDLELEKSEEEYKKIIPQSLK
GKIEFKNVDFRYGTRQLILKNINMTINKGERIALVGESGSGKTTLAKLLLNFYQCEKGEIIVNDYNLLDINVEALRDKIA
YISQETFLFNGTIIENLMLGNPYLTYEEIIEACKKAQIHDFINSLPLRYNTLVEENGSNFSGGQKQRLSIARAILRKPEI
LIMDEATSNLDSITEKAIEKTIHEFSEGMTTIIIAHRLSTIKRCDNIYILEKGEIKEQGNHKELLNKKGRYYKLWKEQLP
EVDNIEEVQVKEVVEVEI
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