Name : prtP (CPR_0968)
Accession : YP_698291.1
PAI name : Not named
PAI accession : NC_008262_P5
Strain : Clostridium perfringens ATCC 13124
Virulence or Resistance: Not determined
Product : cell wall-associated serine proteinase, lactocepin precursor
Function : -
Note : identified by match to protein family HMM PF00082; match to protein family HMM PF02225; match to protein family HMM PF06280; match to protein family HMM TIGR01167
Homologs in the searched genomes : 2 hits ( 2 protein-level )
Publication :
-Myers,G.S., Rasko,D.A., Cheung,J.K., Ravel,J., Seshadri,R., DeBoy,R.T., Ren,Q., Varga,J., Awad,M.M., Brinkac,L.M., Daugherty,S.C., Haft,D.H., Dodson,R.J., Madupu,R., Nelson,W.C., Rosovitz,M., Sullivan,S.A., Khouri,H.M., Dimitrov,G., Watkins,K.L., Mulligan, "Direct Submission", Submitted (06-APR-2006) The Institute for Genomic Research, 9712 Medical Center Dr, Rockville, MD 20850, USA.
-Myers,G.S., Rasko,D.A., Cheung,J.K., Ravel,J., Seshadri,R., DeBoy,R.T., Ren,Q., Varga,J., Awad,M.M., Brinkac,L.M., Daugherty,S.C., Haft,D.H., Dodson,R.J., Madupu,R., Nelson,W.C., Rosovitz,M.J., Sullivan,S.A., Khouri,H., Dimitrov,G.I., Watkins,K.L., Mullig, "Skewed genomic variability in strains of the toxigenic bacterial pathogen, Clostridium perfringens", Genome Res. 16 (8), 1031-1040 (2006) PUBMED 16825665.
-Myers,G.S., Rasko,D.A., Cheung,J.K., Ravel,J., Seshadri,R., DeBoy,R.T., Ren,Q., Varga,J., Awad,M.M., Brinkac,L.M., Daugherty,S.C., Haft,D.H., Dodson,R.J., Madupu,R., Nelson,W.C., Rosovitz,M.J., Sullivan,S.A., Khouri,H., Dimitrov,G.I., Watkins,K.L., Mullig, "Direct Submission", Submitted (28-JUL-2006) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA.
| DNA sequence : | |
ATGAAGGAACAGAAAAAACAGATGAAGAGGTTTTTATCCTCAACGCTCAATGGTTTGGTGGTATTGGCTCTTATAATGCC
TAGTAGTGTAGGAACTAATGTAATGGCAGAGGAAATTCAAAATGGGACAAGCCATACAGTAAGAAATTTAGAGAATATTG
CTAGGGATGAACTTTATTTTAAGTATCAAAATCCAAATGAAGTAGTAAGAGTTATAGTTGAACTTGAAAAGCCAGCAGCT
ATAGAGGAAGCTAAGGCTGAAGGTGAGAAAAAACCATCTGAAGCAAAAATTCAAGAAGTAAAAGAAGAACAAAAAGATGC
TAAGGATGAAGCAGAAGAAATTACAGGAGAAAAGATAAATAAAAGCTTTGGAACCTTAATAAATGGATTCAGTATCGATA
CAAAAGTAAAAGATATAGAGGAATTAAAGAAAATCGATGGTGTAAAAAGCGTAAAAGTTGTAAAGACTTATTATCCAGCT
ATGAATTCTGCTAAAGATTTAACACAGGCAGTAGAAACTTGGAAAGAGTTAGGCTTAAAAGGTGAAGGAATGGTTGTTTC
TATTATAGATTCAGGAATAGATCCAAATCATAAAGATATGAAAATAACAGATTCATCAAAAGCTAAGCTTAAAAAAGAAA
ATTTAAAAGATGGACCAGGAAAATATTTTACAGAAAAAATTCCATATGGATATAATTTTGCTGATGAAAATGAAAATATT
ATAGATACACATCCAAAAGTAGATATGCATGGAATGCATGTAGCAGGAATAGTTGCTGCCAATGGAAGTGATGAAGAGCT
TGCTAAAAATGAGGCAATAAAAGGAGTAGCACCAGAAGCACAATTACTAGCTATGAAAGTTTTTTCAAATAATCCTAATA
GACAAGGGGCAGCTGAGGATGATATAGTAGCTGCCATTGAAGAGTCTGTTAATCAAGGAGCAGACATAATAAATATGAGT
TTAGGATCTTCTGCTGGATTCCAAAAAGAAGATGATCCAGAACAAATAGCCGTTAAAAAGGCTGTGGATGCTGGGGTAGT
CGTTGTTGTGGCTGCTGGAAATTCACAATATTCAACGGCTCCATACAAGGTTCCGGATATAAAGGATACTGGTTTAGTAG
GAGCTCCTGGAACTGCAAAGGATGCACTTACAGTAGCAAACTATCATAATAGTAAGATGCTATTACCAACAATAAGCTTT
GAAGATAATGGTGAAGCAGTTAATATACCATTTATGTTATCAGGAGAAGAAAATAGTCTTAATTTAGATAAAGACTTTGA
TTTAGTAGATTGTGGACTTGGAAAGGTACAAGATTTTAAAGGAAAAGATTTAAAGGGAAAAGTTGCCTTAATAAAAAGAG
GGGAAATTACTTTTATAGATAAAAATTTAAATGCACAGGCAGCTGGTGCTGAAGGGATAATAATATACAATGGAGATGGT
GATGAGTCATTTATAAATATGGCAACAGATCCAAAGGTTAAAATTCCATCAGTATTTGTTAAAAACTCAGATGGGGAAAA
ATTTAAAAATGCTATTAATAAGAATTTAAAGATAAAGTTTACAAACAATAAAATATTAGTTGCAAGTAGTGATGCTGGTG
ATTTTGTTGAATCATCATCATGGGGACCTACTCCAAGCTTAGACTTTAAACCACAAATATCTGCACCAGGTGGAAATATA
TATTCAACTATAAATGATAATAAATATGGTATTAAGACTGGTACATCAATGGCAGCGCCACATGTTGCTGGAGGAGAAAC
ATTAATAGTTGAAGGGCTTAAAAAGGAAAATCCAAATCTTAAGGGAAGAGATTTAGTAGAATTAGCAAAAAATACAGCAA
TAAGTACTTCTAAGATAGAGATGGATAAAAATAATCCTAAGATACCTTATTCACCTAGAAGACAAGGAGCTGGTCTTATG
CAAATAGAGGAAGCTCTTAAAAATAAGGTTGTAGTATTAGATGAAAATAATAATTCTACTGTGGCATTAAAGCAAATAGG
AAATGAGAAAGAATTTACATTAACATTAAAAAATTATGGAGATAAAGAAGCTGAGTATGATGTTGAAAATTTAGGTGGAG
TTTTAACAGAAACTAGTGATACTTTAAAGACTATGTCTCATGATGTAAGGATTGATGGGGCAAATCTTAAGTTTGATAAA
AATAAAGTTATTGTTCCAGCTAAGGGTACAGAAACTTTAAAAGTGAAATTAACAATACCTAAAGCCGTTTCAGAGGATAG
ATTTGTTGAAGGATTTATTAAACTTACAGGAAAAGATGTTCCATCATTATCAGTTCCTTTCATAGGATATTATGGAGACT
GGGGAAAAGATCAAATAATAGAAGCTATGAATTGGGATAGTAAAAATCAAAAGTTCATAGTTCCATCAGAAGTATTAACA
AATTTAAATGGAGCAATTGGGTACAAGCTAGGTTTAGGAGCAAAGGATGAAAAGGGAAATCTTAAAGTAGATCCTAGTAA
AATAGCAATATCTCCAGATGGAAATGGAAATGGTGATATCATAGCTCCATATTTATATTATTTAAGAAATGCTAAGGTAA
CTGAATTAGAGTTATTAGATAAAGATAAAAAATCCTTAGGAGTTATAGGACATGAAAATTATATAAGAAAAGAGGAATAT
AGTGAACCAAGTGGAAGTGGAAAAGCTCCAAACTTATTTGAGAACTTAACTTGGGATGGAAAGTTATATAACCAAAGTAC
AGGAGAAAAGGAAGTTGTACCAGAAGGACAATATTATTTAAATATAAAATCAAAAGTTGATTATGATAATGCTAAATATC
AAGAGGTAGTTGTTCCAGTACAAGTTGACCTTACTGCACCTAATATTGAAATAACTTCAGGAGACAAAGTATTAGGTAAT
AAGGACGATAATGAAGTAGATTATAAATTAGAATGGACTGCTAAGGATAATGTTTCTATTATACCAGATATAGCTACAGT
ATATGTAAATGGTAAAAGTGTAAGCGCTAATATAAGTGAAAATAATGGCACTTATAGTTGTGATATAAAGTTAAAAAACA
ATGCTTTAAATGAAGTTAAGGTAGCTATGAATGATACAGCACTTAATTTAGCTGAAGTATCTAAGAATATAAAGGTTGAA
TCTTCAGATCCATTAATAAAATTTGAAGGTAACTTTGGAACTGCTACTTTAAGTGTTGATAATTCTTTAGAATATCTAGT
AAAGGGAGTAGTTTTAGGTCCAGTAAAAGAATTTAAGTTAAATAATGAAGATGTTAAGGTAAATGAAGATGGAACTTTTG
TACATAAAGTTGCTTTAAAAGAAGGAATGAATAAAGTTAATATTTATGCGAAAGATGAAAATGGAAATGTGTTATATAAT
TATGCTAGTAATATATTATGTGATACTAAAGCTCCTATAATAAACTTATCATCTCCAAAGGTAGAATCAGATGGTATAGT
TATAACTAATGAAGATAAAATAAATATAAAAGGTACTGTTGAGGATAACACATGGGGATATAAATTCTATAAAAATGACA
CTATTCAGTTAGAAGTTGAAGAGAGAGCTAAGCCAGGAAATGATAGTACAAGAAGAGAGTTTTCATATGAAGTTCCTGTA
AAAGATGGAGATGTTATAGTATTAAAGGCCGTTGATGTATTAGGTCATGAAACTCTTAGAAAGCTTACTGTTAAGGTTGA
TAAAAATGCTCTAGAAGTGACAATTGGAGGGGTATCAGATCAAGGAATATACAATAGTGATGTAACTCCAAAGGTAGTTT
CTAATGAAGATGCAGAAATTAGTTACTTATTAAATGGAAAAGATTATGATGGAAAAACTCCTATTTCAGAGGATGGAAAC
TATGAGTTAATTGTAAAGTCTAAAGATAAAGCTGGAAATAAAACAGAAGTAAAAACTAACTTTACTATAGATAAAACACC
AGCAAATATTTCTGTTAATAATATTGAAGATGGAAGAGTATATAATGAAGAAATTATTCCTGAAATAGCTAGTAATGAAG
AAGCTACTTTTAAATATACTTTAAACGGAAAAGAATATGATGGTAAGTCTAGTATAAAAGAAGATGGTGACTATGTTTTA
AATATACAAGCAACAGATAAAGCTGGAAATGTATCAAATAAAGAAGTTAAGTTTTCTATAGATAGAACACCTGCTAATAT
ATTTGTAACTGGAGTTGAAGAGGGTAAAGTTTATAATGAACCTGTTACTCCAATAATTGAGATTGATGAGAAGGATGCAA
CTTTAAAATATACTTTAAATGGAAAAGAATATGACGGAAAATCAATAATAGATGAAGATGGTAAGTATATCTTAAAGGTT
GAAGCTTTAGATAAAGCAGGAAATCCATCAGAAAAAGTTATTAACTTTGCTATAGACAGAAGTTTCTTAAAAAATTCAGA
AAAGGATGATCCAAATAATAATAAGAAATATAATGAACCTATTGATGAGGAAATAGTACAAAAGCCTGAAGCCAAAACTG
ATTCAAAAGAGGAATTAAAGGCTAATAAGCTTAAAGAAGAGAATAAAGTTAGTGAAGAAAATAAAAGTAATGAAGAGAAC
TCAGTTAAAGATGAAAAACTTCTTAAGAAAGAAGGAACATTGCCAACAACAGGACAAGTTCTTGGAGGATCTATGCTATC
TTTATTAGGAGCTATAATGGCTTCAGTTGGAGCTGTTTTCTTAAAAAGAAAAAATAAAAACAAGGAAGAATAG
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| Protein sequence : | |
MKEQKKQMKRFLSSTLNGLVVLALIMPSSVGTNVMAEEIQNGTSHTVRNLENIARDELYFKYQNPNEVVRVIVELEKPAA
IEEAKAEGEKKPSEAKIQEVKEEQKDAKDEAEEITGEKINKSFGTLINGFSIDTKVKDIEELKKIDGVKSVKVVKTYYPA
MNSAKDLTQAVETWKELGLKGEGMVVSIIDSGIDPNHKDMKITDSSKAKLKKENLKDGPGKYFTEKIPYGYNFADENENI
IDTHPKVDMHGMHVAGIVAANGSDEELAKNEAIKGVAPEAQLLAMKVFSNNPNRQGAAEDDIVAAIEESVNQGADIINMS
LGSSAGFQKEDDPEQIAVKKAVDAGVVVVVAAGNSQYSTAPYKVPDIKDTGLVGAPGTAKDALTVANYHNSKMLLPTISF
EDNGEAVNIPFMLSGEENSLNLDKDFDLVDCGLGKVQDFKGKDLKGKVALIKRGEITFIDKNLNAQAAGAEGIIIYNGDG
DESFINMATDPKVKIPSVFVKNSDGEKFKNAINKNLKIKFTNNKILVASSDAGDFVESSSWGPTPSLDFKPQISAPGGNI
YSTINDNKYGIKTGTSMAAPHVAGGETLIVEGLKKENPNLKGRDLVELAKNTAISTSKIEMDKNNPKIPYSPRRQGAGLM
QIEEALKNKVVVLDENNNSTVALKQIGNEKEFTLTLKNYGDKEAEYDVENLGGVLTETSDTLKTMSHDVRIDGANLKFDK
NKVIVPAKGTETLKVKLTIPKAVSEDRFVEGFIKLTGKDVPSLSVPFIGYYGDWGKDQIIEAMNWDSKNQKFIVPSEVLT
NLNGAIGYKLGLGAKDEKGNLKVDPSKIAISPDGNGNGDIIAPYLYYLRNAKVTELELLDKDKKSLGVIGHENYIRKEEY
SEPSGSGKAPNLFENLTWDGKLYNQSTGEKEVVPEGQYYLNIKSKVDYDNAKYQEVVVPVQVDLTAPNIEITSGDKVLGN
KDDNEVDYKLEWTAKDNVSIIPDIATVYVNGKSVSANISENNGTYSCDIKLKNNALNEVKVAMNDTALNLAEVSKNIKVE
SSDPLIKFEGNFGTATLSVDNSLEYLVKGVVLGPVKEFKLNNEDVKVNEDGTFVHKVALKEGMNKVNIYAKDENGNVLYN
YASNILCDTKAPIINLSSPKVESDGIVITNEDKINIKGTVEDNTWGYKFYKNDTIQLEVEERAKPGNDSTRREFSYEVPV
KDGDVIVLKAVDVLGHETLRKLTVKVDKNALEVTIGGVSDQGIYNSDVTPKVVSNEDAEISYLLNGKDYDGKTPISEDGN
YELIVKSKDKAGNKTEVKTNFTIDKTPANISVNNIEDGRVYNEEIIPEIASNEEATFKYTLNGKEYDGKSSIKEDGDYVL
NIQATDKAGNVSNKEVKFSIDRTPANIFVTGVEEGKVYNEPVTPIIEIDEKDATLKYTLNGKEYDGKSIIDEDGKYILKV
EALDKAGNPSEKVINFAIDRSFLKNSEKDDPNNNKKYNEPIDEEIVQKPEAKTDSKEELKANKLKEENKVSEENKSNEEN
SVKDEKLLKKEGTLPTTGQVLGGSMLSLLGAIMASVGAVFLKRKNKNKEE
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