Name : CPR_0626 (CPR_0626)
Accession : YP_697953.1
PAI name : Not named
PAI accession : NC_008262_P3
Strain : Clostridium perfringens ATCC 13124
Virulence or Resistance: Not determined
Product : ISCpe2, transposase orfB
Function : -
Note : identified by match to protein family HMM PF01385; match to protein family HMM PF07282; match to protein family HMM TIGR01766
Homologs in the searched genomes : 280 hits ( 280 protein-level )
Publication :
-Myers,G.S., Rasko,D.A., Cheung,J.K., Ravel,J., Seshadri,R., DeBoy,R.T., Ren,Q., Varga,J., Awad,M.M., Brinkac,L.M., Daugherty,S.C., Haft,D.H., Dodson,R.J., Madupu,R., Nelson,W.C., Rosovitz,M., Sullivan,S.A., Khouri,H.M., Dimitrov,G., Watkins,K.L., Mulligan, "Direct Submission", Submitted (06-APR-2006) The Institute for Genomic Research, 9712 Medical Center Dr, Rockville, MD 20850, USA.
-Myers,G.S., Rasko,D.A., Cheung,J.K., Ravel,J., Seshadri,R., DeBoy,R.T., Ren,Q., Varga,J., Awad,M.M., Brinkac,L.M., Daugherty,S.C., Haft,D.H., Dodson,R.J., Madupu,R., Nelson,W.C., Rosovitz,M.J., Sullivan,S.A., Khouri,H., Dimitrov,G.I., Watkins,K.L., Mullig, "Skewed genomic variability in strains of the toxigenic bacterial pathogen, Clostridium perfringens", Genome Res. 16 (8), 1031-1040 (2006) PUBMED 16825665.
-Myers,G.S., Rasko,D.A., Cheung,J.K., Ravel,J., Seshadri,R., DeBoy,R.T., Ren,Q., Varga,J., Awad,M.M., Brinkac,L.M., Daugherty,S.C., Haft,D.H., Dodson,R.J., Madupu,R., Nelson,W.C., Rosovitz,M.J., Sullivan,S.A., Khouri,H., Dimitrov,G.I., Watkins,K.L., Mullig, "Direct Submission", Submitted (28-JUL-2006) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA.
| DNA sequence : | |
GTGATAAGAAAGAAAGCATATAAATTTAGAATATATCCAACTAAGAAACAAGCCGAGCTAATTAACAAGACTATTGGATG
TTGTAGGTTTGTATTCAACTATTCTTTAGGTGTTCAAAAAACTAAAGATAATTATTGGAATATAGTTGAGGAGATGGTTC
AACAAGGCTACTTCCAAGAAAATAATTGGAAAGGCGAGTTCTTTAATAAAGCCAATTCAATTAAAGATATAGCTAAATTA
AAGAAAAGCTATGATTGGCTTAAAGAAGTAGATAGCATAGCACTACAGGCTTCTGTTGAAAATCTTGGTGCTGGATATGA
TAAGTATTACAAAAAAATAGGTGGCAGACCTAAATTTAAGTCTAAGAAAAATGAAATACAATCTTATACTACTAAATTGG
TAAAAGCTAAAGGTAATGTAAATATTGAGATAGTAGGTAAAGGAATTAAACTACCTAAACTTGGATTAGTTAAGATAGAA
AATTCAAGAAATGTAGATGGAAATATTAAAAGAGTTACTGTGAGCAGAACACAATCTGGTAAATATTTTGCATCTATTCT
TTGTGATGTAAATATTCAAGAATTACCTAAAATAGATAAAAAAGTTGGTGTAGATGTTGGATTAAAAACTTTTGCTGTTT
GTTCTGATGGATATGAAGAAGCTAATCCTAAACACTTTAGAAAGGCAGAAAAAAGACTTATTAAACTTCAAAGAGATTTA
GCTCGTAAAGAATATAACTCTAAAAACTATCACAAAAATAGAATTATGATTGCTAAATTACATGAAAGGATAGCAAATCA
AAGAATGGACTTCTTACAAAAATTTTCAACTAAGCTAATTAGAGAAAACCAATCAATAGCCATTGAAGATTTAAGAGTTT
CAAATATGCTTAAAAACCACAAACTTGCTAAAGTAATTTCAGAAGCAAGTTGGTCAGAATTTAGAAGAATGCTAGAATAC
AAGGCTGAATGGTATGGTAGAAAAATAGTAATTGCTCCACCAGACTATGCAAGCTCTCAACTATGTTCCGAATGTGGTTA
TAAGAATATAGAAGTTAAAAACCTAGGTCTAAGAGAATGGGTATGTCCCGAATGTGGAACACACCATCAAAGAGACCTTA
ATGCTTCAATAAACTTGGAAAAGCTGATAGCTTAA
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| Protein sequence : | |
MIRKKAYKFRIYPTKKQAELINKTIGCCRFVFNYSLGVQKTKDNYWNIVEEMVQQGYFQENNWKGEFFNKANSIKDIAKL
KKSYDWLKEVDSIALQASVENLGAGYDKYYKKIGGRPKFKSKKNEIQSYTTKLVKAKGNVNIEIVGKGIKLPKLGLVKIE
NSRNVDGNIKRVTVSRTQSGKYFASILCDVNIQELPKIDKKVGVDVGLKTFAVCSDGYEEANPKHFRKAEKRLIKLQRDL
ARKEYNSKNYHKNRIMIAKLHERIANQRMDFLQKFSTKLIRENQSIAIEDLRVSNMLKNHKLAKVISEASWSEFRRMLEY
KAEWYGRKIVIAPPDYASSQLCSECGYKNIEVKNLGLREWVCPECGTHHQRDLNASINLEKLIA
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