Name : lpfD (EC042_4081)
Accession : YP_006098364.1
PAI name : Tn2411
PAI accession : NC_017626_R1
Strain : Escherichia coli 042
Virulence or Resistance: Not determined
Product : putative fimbrial adhesin
Function : -
Note : -
Homologs in the searched genomes : 35 hits ( 35 protein-level )
Publication :
-Aslett,M.A., "Direct Submission", Submitted (25-SEP-2009) Aslett M.A., Wellcome Trust Sanger Institute, Pathogen Sequencing Unit, Wellcome Trust Genome Campus, Hinxton, Cambridge, Cambridgeshire. CB10 1SA, UNITED KINGDOM.
-Chaudhuri,R.R., Sebaihia,M., Hobman,J.L., Webber,M.A., Leyton,D.L., Goldberg,M.D., Cunningham,A.F., Scott-Tucker,A., Ferguson,P.R., Thomas,C.M., Frankel,G., Tang,C.M., Dudley,E.G., Roberts,I.S., Rasko,D.A., Pallen,M.J., Parkhill,J., Nataro,J.P., Thomson,N, "Complete genome sequence and comparative metabolic profiling of the prototypical enteroaggregative Escherichia coli strain 042", PLoS ONE 5 (1), E8801 (2010) PUBMED 20098708 REMARK Publication Status: Online-Only.
-Chaudhuri,R.R., Sebaihia,M., Hobman,J.L., Webber,M.A., Leyton,D.L., Goldberg,M.D., Cunningham,A.F., Scott-Tucker,A., Ferguson,P.R., Thomas,C.M., Frankel,G., Tang,C.M., Dudley,E.G., Roberts,I.S., Rasko,D.A., Pallen,M.J., Parkhill,J., Nataro,J.P., Thomson,N, "Direct Submission", Submitted (11-APR-2012) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA.
| DNA sequence : | |
ATGAACAAGTATATTATACAGTGGTGCTTGACTGTTTTTATCTTCTCCTTTAGTGGTGCAACATTTGCGGCCCCAAAAGG
TATCTGCACCTCAGATAATGGGGCCTTTCATAGCACACTTGATTTTTCCGGCTATCTGATTACGGCAGACGAGAACAGAG
TGGGAGAGACCTTTAATAAAACCGTGACAAATGGGGACTCTTATCCTGCTCACTGCCATTGTGATACAGGGAAAGTGGGG
GAGTTTCCTTATATTTACTATACAGCGAGAATAAACGAGGCCTTAAGTTATGCGGGTGTTCGTTCTAATGTAAACTACTT
TAATTTGAATCCTAATCTGGATGTTGGAATATCGATAGACCTTCTCGGTGTAGGATACATTAATGCACCTTTTGAATACC
ATGCTAACAGGCCTACTGGAGGTTCATATAAATGTAGTCGCACGGACCCATTAAGTATTTCCAGTGGTGCAAAAGCAATA
ATTTATTTTTATATTAAGAAGACTTTTGCTGGAAAGTTAATTGTCCCTGAAACTCTCGTGGCAAAATTGTACGGAACTAT
AAGCCGTGACACTCCGGTTGATTACTCACAACCTATGGCGGATGTTTATATTCGTGGCGATATCACTGCACCGCAAAGCT
GTGAAATTAACAGTTTAAGACCCATTAATTTTGATTTTAAAGAAATTCCTGCAGCAGATTTTTCTTCGGTAGCTGGAAGT
ACCGTGACAACGCATAAAATTACCAAAACCGTCACCATTGAGTGTGAAAATTTAGGAATACTAAATACTGATGATATCAG
TACCTCTTTTTATGCTACCGAACCCAGTACTGACAACTCAATGGTCGTGACATCAAACCCGAACGTTGGGATAAAAATTT
ATGATAAAAATAATAAGGAAATCAACGTTAACGGTGGTGAACTGCCGACAGATATGGGTAAATCAAACGTCTTTGGTGAA
AAAGCCGGTAGCGTCACTTTTTCTGCTGCTCCTGCAAGCCTCACGGGGGCTCGCCCCGCGCCAGGAACATTTACCGCGAC
TGCAACGATAACAATTGAGATTGTACGCTAA
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| Protein sequence : | |
MNKYIIQWCLTVFIFSFSGATFAAPKGICTSDNGAFHSTLDFSGYLITADENRVGETFNKTVTNGDSYPAHCHCDTGKVG
EFPYIYYTARINEALSYAGVRSNVNYFNLNPNLDVGISIDLLGVGYINAPFEYHANRPTGGSYKCSRTDPLSISSGAKAI
IYFYIKKTFAGKLIVPETLVAKLYGTISRDTPVDYSQPMADVYIRGDITAPQSCEINSLRPINFDFKEIPAADFSSVAGS
TVTTHKITKTVTIECENLGILNTDDISTSFYATEPSTDNSMVVTSNPNVGIKIYDKNNKEINVNGGELPTDMGKSNVFGE
KAGSVTFSAAPASLTGARPAPGTFTATATITIEIVR
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