Name : ccrB3 (SARLGA251_00360)
Accession : YP_005754051.1
PAI name : Type-XI SCCmec
PAI accession : NC_017349_R1
Strain : Staphylococcus aureus 04-02981
Virulence or Resistance: Not determined
Product : site-specific recombinase CcrB3
Function : -
Note : Similar to Staphylococcus aureus (strain MRSA252) ccrb subname: full=site-specific recombinase UniProt:Q6GKP2 (EMBL:BX571856) (542 aa) fasta scores: E()=1.4e-179, 86.3% id in 542 aa
Homologs in the searched genomes : 39 hits ( 38 protein-level, 1 DNA-level )
Publication :
-Garcia-Alvarez,L., Holden,M.T., Lindsay,H., Webb,C.R., Brown,D.F., Curran,M.D., Walpole,E., Brooks,K., Pickard,D.J., Teale,C., Parkhill,J., Bentley,S.D., Edwards,G.F., Girvan,E.K., Kearns,A.M., Pichon,B., Hill,R.L., Larsen,A.R., Skov,R.L., Peacock,S.J., M, "Meticillin-resistant Staphylococcus aureus with a novel mecA homologue in human and bovine populations in the UK and Denmark: a descriptive study", Lancet Infect Dis 11 (8), 595-603 (2011) PUBMED 21641281.
-Garcia-Alvarez,L., Holden,M.T., Lindsay,H., Webb,C.R., Brown,D.F., Curran,M.D., Walpole,E., Brooks,K., Pickard,D.J., Teale,C., Parkhill,J., Bentley,S.D., Edwards,G.F., Girvan,E.K., Kearns,A.M., Pichon,B., Hill,R.L., Larsen,A.R., Skov,R.L., Peacock,S.J., M, "Direct Submission", Submitted (05-APR-2012) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA.
-Holden,M., "Direct Submission", Submitted (02-FEB-2011) to the INSDC. Holden M., Pathogen Sequencing Unit, The Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge CB10 1SA, UNITED KINGDOM.
| DNA sequence : | |
ATGCAACAACTCAAACAAAAACGTGTCGGTATCTATGTTCGTGTATCGACAGAAATGCAGAGTACTGAAGGATATAGTAT
CGACGGACAAATCAATCAAATCAGAGAATACTGTAATTTCAATAACTTCGCAGTTGTAGATGTATACGCGGATAGAGGAA
TCTCTGGAAAATCTATGAACCGCCCAGAATTACAACGTTTGTTAAAAGATGCGAACGAAGGTCAGATCGATTGTGTCATG
GTATATAAAACGAATCGCCTAGCACGTAACACTTCTGACTTACTCAAAATTGTTGAAGACCTTCATCGTCAAAATGTTGA
ATTTTTTAGCTTGTCTGAACGTATGGAGGTCAATACTTCTTCTGGTAAACTCATGTTACAAATACTTGCGAGTTTCTCAG
AATTCGAACGTAATAACATTGTCGAAAACGTATTCATGGGCCAAACCAGACGCGCCCAAGAAGGCTATTATCAAGGAAAT
TTGCCGCTAGGATACGATAAAATACCAGATAGTAAACACGAACTGATGATTAATCAACATGAAGCCAATATTGTAAAATA
TATTTTCGAGTCTTATGCCAAAGGGCATGGCTATCGTAAAATTGCCAATGCACTCAATCACAAAGGTTACATCACTAAAA
AAGGGAAACCTTTCAGTATCAGTTCTATTACTTATATTCTATCCAATCCGTTCTACATTGGTAAAATTCAATTTGCGAAG
TACAAAGATTGGAATGAAAAACGTCGTAAAGGCCTGAATGATAAACCAATCATAGCTGACGGTAAGCATTCCCCTATTAT
TAGCCAAGACTTATGGGATAAAGTCCAAGCACGTAAACAACAAGTCAGTCAAAAACCACAAGTTCACGGTAAAGGAACCA
ATCTATTAACCGGTATCGTTCACTGTCCGCAGTGCGGTGCACCTATGGCCGCAAGCAACACCACTAATACACTCAAAGAT
GGAACTAAGAAACGTATTCGCTATTATTCTTGTAGTAACTTTCGCAACAAAGGATCAAAAGTATGTTCAGCCAATAGTAT
TAGAGCCGATGTCATCGAAAAATATGTCATGGATCAAATACGCGAAATTGTCAAAAGTGATACAGTTATACAACAGGTTG
TCGAACGTGTCAATCAAGAGAATCAAGTCGATGTAGCTGCACTCAATCATGATATTGCTTACAAACAACAACAATTTGAT
GAAGTAAACGCTAAAATAAAAAATCTTGTTCAAACCATCGATGATAATCCAGACTTAACGTCTGCAATCAAACCAACGAT
TCATCAATATGAAGCACAACTGAATGACATTACAAATCAAATGAATCAACTCAAGCACCAACAAAATCAAGAGAAACCAT
CTTATGATTCAAAACAAATCGCTGTCTTATTACAACGCATATTTCAAAACATAACATCCATGGATAAAACACAACTCAAA
GCATTGTACCTTACGGTTATTGACCGTATTGATATTCGTAAAGATGGGGATCATAAAAAGCAATTCTATGTCACACTCAA
GCTCAATAATGAGATTATTAAACAACTTTTCAATAATACCGCTCTAGACGAAGTGCTCCTCAGCACTTCGTCTTTGTTTT
TGCCTCAAACACTCTACTTTCAAATCTAA
|
| Protein sequence : | |
MQQLKQKRVGIYVRVSTEMQSTEGYSIDGQINQIREYCNFNNFAVVDVYADRGISGKSMNRPELQRLLKDANEGQIDCVM
VYKTNRLARNTSDLLKIVEDLHRQNVEFFSLSERMEVNTSSGKLMLQILASFSEFERNNIVENVFMGQTRRAQEGYYQGN
LPLGYDKIPDSKHELMINQHEANIVKYIFESYAKGHGYRKIANALNHKGYITKKGKPFSISSITYILSNPFYIGKIQFAK
YKDWNEKRRKGLNDKPIIADGKHSPIISQDLWDKVQARKQQVSQKPQVHGKGTNLLTGIVHCPQCGAPMAASNTTNTLKD
GTKKRIRYYSCSNFRNKGSKVCSANSIRADVIEKYVMDQIREIVKSDTVIQQVVERVNQENQVDVAALNHDIAYKQQQFD
EVNAKIKNLVQTIDDNPDLTSAIKPTIHQYEAQLNDITNQMNQLKHQQNQEKPSYDSKQIAVLLQRIFQNITSMDKTQLK
ALYLTVIDRIDIRKDGDHKKQFYVTLKLNNEIIKQLFNNTALDEVLLSTSSLFLPQTLYFQI
|
|
