Name : ECO111_3779 (ECO111_3779)
Accession : YP_003236114.1
PAI name : LEE
PAI accession : NC_013364_P1
Strain : Escherichia coli 042
Virulence or Resistance: Not determined
Product : putative IS602 transposase OrfB
Function : -
Note : Integrative element ECO111_IE05
Homologs in the searched genomes : 587 hits ( 584 protein-level, 3 DNA-level )
Publication :
-Hattori,M., Toh,H., Oshima,K., Yamashita,A., Hayashi,T., Ogura,Y. and Ooka,T., "Direct Submission", Submitted (21-DEC-2008) Contact:Masahira Hattori University of Tokyo, Graduate School of Frontier Sciences; 5-1-5 Kashiwanoha, Kashiwa, Chiba 277-8562, Japan URL :http://www.cb.k.u-tokyo.ac.jp/hattorilab/.
-Ogura,Y., Ooka,T., Iguchi,A., Toh,H., Asadulghani,M., Oshima,K., Kodama,T., Abe,H., Nakayama,K., Kurokawa,K., Tobe,T., Hattori,M. and Hayashi,T., "Comparative genomics reveal the mechanism of the parallel evolution of O157 and non-O157 enterohemorrhagic Escherichia coli", Proc. Natl. Acad. Sci. U.S.A. 106 (42), 17939-17944 (2009) PUBMED 19815525.
-Ogura,Y., Ooka,T., Iguchi,A., Toh,H., Asadulghani,M., Oshima,K., Kodama,T., Abe,H., Nakayama,K., Kurokawa,K., Tobe,T., Hattori,M. and Hayashi,T., "Direct Submission", Submitted (07-OCT-2009) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA.
| DNA sequence : | |
TTGTGCAGCGAAATACGCCGGGCGTGGAACCAAAGTCGGGGCTCTGCGGGCGCGCGCACTCTGGCTGAAATGCTGACTCA
AAACGGCGTCCCGATGAGCCGTTACCGTGCCGGACGTCTGATGAAATATCTGAACCTGAGCAGTTGTCAGCCCGGAAAAC
ATCAGTATAAAAATGCCCGTCAGGAGCATACCAGCCTGCCGAATCTGCTTGAGCGTCAGTTCGCAGTACCGGAGCCAGAC
CGGGTATGGTGTGGAGATATTACGTATCTCTGGGCAGGAAATCGCTGGTGCTATCTGGCGGTTGTTATGGATCTTTTTGC
CCGCAGGGTTATCGGCTGGAGTCTGTCAGCGCATGCCGATACCGCACTGATAAGCAGTGCCCTGCGGATGGCCTATGAGA
CGCGTGGCCAACCCCGGGATGTCGTGTTCCATAGCGACCAGGGAAGCCAGTATACAGGCCTTAAATATCAACAACTTCTC
TGGCGTTGCAGAATAAATCAAAGCGTCAGTCGGCGGGGAAACTGCTGGGATAACAGCCCCATGGAACGCTTCTTCCGCAG
TCTGAAAACAGAATGGGTGCCAACGAATGGTTACGCAGGCAAGGACGAGGCCCGGCAGCAAATTAATGATTACATATTGA
ACTACTACAACAGCGTCAGACCTCACCATTATAACGGTGGGCTGACGCCGGAAGAGTCAGAGAACAGATACCATTTTTAC
TGTAAAACCGTGGCCAATATTACTTGA
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| Protein sequence : | |
MCSEIRRAWNQSRGSAGARTLAEMLTQNGVPMSRYRAGRLMKYLNLSSCQPGKHQYKNARQEHTSLPNLLERQFAVPEPD
RVWCGDITYLWAGNRWCYLAVVMDLFARRVIGWSLSAHADTALISSALRMAYETRGQPRDVVFHSDQGSQYTGLKYQQLL
WRCRINQSVSRRGNCWDNSPMERFFRSLKTEWVPTNGYAGKDEARQQINDYILNYYNSVRPHHYNGGLTPEESENRYHFY
CKTVANIT
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