Name : insD (ECUMN_3358)
Accession : YP_002414033.1
PAI name : Not named
PAI accession : NC_011751_P1
Strain : Escherichia coli 042
Virulence or Resistance: Not determined
Product : insertion element IS2 transposase InsD
Function : -
Note : IS2 OrfB; forms an overlapping reading frame with orfA; may form a fusion protein OrfAB due to ribosomal frameshifting; in some cases OrfB is itself expressed; both OrfA and OrfAB bind terminal inverted repeats
Homologs in the searched genomes : 604 hits ( 590 protein-level, 14 DNA-level )
Publication :
-Genoscope -,C.E.A., "Direct Submission", Submitted (14-DEC-2008) Genoscope - Centre National de Sequencage : BP 191 91006 EVRY cedex - FRANCE (E-mail : seqref@genoscope.cns.fr - Web : www.genoscope.cns.fr).
-Touchon,M., Hoede,C., Tenaillon,O., Barbe,V., Baeriswyl,S., Bidet,P., Bingen,E., Bonacorsi,S., Bouchier,C., Bouvet,O., Calteau,A., Chiapello,H., Clermont,O., Cruveiller,S., Danchin,A., Diard,M., Dossat,C., Karoui,M.E., Frapy,E., Garry,L., Ghigo,J.M., Gill, "Organised genome dynamics in the Escherichia coli species results in highly diverse adaptive paths", PLoS Genet. 5 (1), E1000344 (2009) PUBMED 19165319.
-Touchon,M., Hoede,C., Tenaillon,O., Barbe,V., Baeriswyl,S., Bidet,P., Bingen,E., Bonacorsi,S., Bouchier,C., Bouvet,O., Calteau,A., Chiapello,H., Clermont,O., Cruveiller,S., Danchin,A., Diard,M., Dossat,C., Karoui,M.E., Frapy,E., Garry,L., Ghigo,J.M., Gill, "Direct Submission", Submitted (18-DEC-2008) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA.
| DNA sequence : | |
GTGGATAGCGCACGTGCCCTTATTGCCCGGGGATGGGGAGTAAGCTTAGTCAGCCGTTGTCTCCGGGTGTCGCGTGCGCA
GTTGCACGTCATTCTCAGACGAACCGATGACTGGATGGATGGCCGCCGCAGTCGTCACACTGATGATACGGATGTGCTTC
TCCGTATATACCATGTTATCGGAGAGCTGCCCACGTATGGTTATCGTCGGGTATGGGCGCTGCTTCGCAGACAGGCCGAA
CTTGATGGTATGCCTGCGATCAATGCCAAACGTGTTTACCGGATCATGCGCCAGAATGCGCTGTTGCTTGAGCGAAAAAC
CGCTGTACCGCCATCGAAACGGGCACATACTGGCAAAGTGGCCGTGAAAGAAAGCAATCAGCGATGGTGCTCTGACGGGT
TCGAGTTCCGCTGTGATAACGGAGAAAAACTGCGAGTCACGTTCGCGCTGGACTGCTGTGACCGTGAGGCACTGCACTGG
GCGGTCACTACGGGCGGCTTCGACAGTGAAACAGTACAGGACGTCATGCTGGGAGCGGTGGAACGCCGCTTCGGCAACGA
GCTTCCGGCGTCTCCAGTAGAGTGGCTGACGGATAATGGTTCATGCTACCGGGCTAATGAAACACGCCAGTTCGCCCGGA
TGTTGGGACTTGAACCGAAGAACACGGCGGTGCGGAGTCCGGAGAGTAACGGCATAGCAGAGAGCTTCGTGAAAACGATA
AAGCGTGACTACATAAGTATCATACCCAAACCAGACGGGTTAACGGCAGCAAAGAACCTTGCAGAGGCGTTCGAGCATTA
TAACGAATGGCATCCGCATAGTGCGTTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCCTGTAATGGGTTAA
GTGATAACAGATGTCTGGAAATATAG
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| Protein sequence : | |
MDSARALIARGWGVSLVSRCLRVSRAQLHVILRRTDDWMDGRRSRHTDDTDVLLRIYHVIGELPTYGYRRVWALLRRQAE
LDGMPAINAKRVYRIMRQNALLLERKTAVPPSKRAHTGKVAVKESNQRWCSDGFEFRCDNGEKLRVTFALDCCDREALHW
AVTTGGFDSETVQDVMLGAVERRFGNELPASPVEWLTDNGSCYRANETRQFARMLGLEPKNTAVRSPESNGIAESFVKTI
KRDYISIIPKPDGLTAAKNLAEAFEHYNEWHPHSALGYRSPREYLRQRACNGLSDNRCLEI
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