PAI Gene Information


Name : VSAL_I1466 (VSAL_I1466)
Accession : YP_002262909.1
PAI name : Not named
PAI accession : NC_011312_R1
Strain : Aliivibrio salmonicida LFI1238
Virulence or Resistance: Not determined
Product : transposase
Function : -
Note : -
Homologs in the searched genomes :   21 hits    ( 21 protein-level )  
Publication :
    -Hjerde,E., "Direct Submission", Submitted (26-JUN-2008) Hjerde E., Department of Molecular Biotechnology, University of Tromso, Breivika, 9037 Tromso, NORWAY.

    -Hjerde,E., Lorentzen,M.S., Holden,M.T., Seeger,K., Paulsen,S., Bason,N., Churcher,C., Harris,D., Norbertczak,H., Quail,M.A., Sanders,S., Thurston,S., Parkhill,J., Willassen,N.P. and Thomson,N.R., "The genome sequence of the fish pathogen Aliivibrio salmonicida strain LFI1238 shows extensive evidence of gene decay", BMC Genomics 9, 616 (2008) PUBMED 19099551 REMARK Publication Status: Online-Only.

    -Hjerde,E., Lorentzen,M.S., Holden,M.T., Seeger,K., Paulsen,S., Bason,N., Churcher,C., Harris,D., Norbertczak,H., Quail,M.A., Sanders,S., Thurston,S., Parkhill,J., Willassen,N.P. and Thomson,N.R., "Direct Submission", Submitted (02-OCT-2008) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA.


DNA sequence : 
ATGGGATACCAATATAAGCAACTGACACTAGGTGAAAGATACCAGATTGAAGCGTGGAATACACATAGTATTTCTGCTCG
TGAAATAGGACAAAAATTAAAACGGAGCAATGGCTCCATTTCAAAGGAACTACGACGTTGTCCTGCTGGAAGCTATTCTG
CCGAGCAAGCGCATAAACACGCTTTCCAAAAAAGAACACTTTCGATTAAGCACACAAAATGCAGCCAAAAGAATAAAAAA
ATAATTCACCTATATCTTCAGCTTGGTTGGAGCCCAGAGCAAATATCTGGACGAATGCGTAGAGAAAAAATAGAAAATAC
AATATGTTGCAGTACTATTTACAACGCAATTAAAAGAGAGCAGTGGCAAAGGATGCTTGCTCGAAAAGGCAAAAAATACA
AACAACGCAAAGGTGTAGAAGCAGGAGCAAGACTCATTCCTAACCGCATTGATATATCTCAACGCCCTGCTATTGTCGAT
GATAAATCTGAGGTTGGTCACTGGGAAGGTGACACTGTTTATGGTCAAGACGGGTATTTAGTAACGATGGTAGAACGAGT
GTCTAAGCTATTAGTTACGTGCAAAGTACGCAATAAATCCAAAAAGGCCGTTACTCGCGGGATAAATCGCATGATGAAGC
CCTTTAAAGAGCTTTGCAAAACAATCACATTTGATAATGGCGGAGAGTTCGCAGGTCATGCTAAGATAGCTAAGCATCTG
AACTGTGACATTTATTTTGCTAAACCTTACCATTCTTGGCAACGAGGTTTGAATGAAAATACCAATGGTTTACTAAGACG
TTTTTTCCCAAAGGGAATGGCCATTGGAGAACTTACTGCAAAAGAGATTAAACAGGCAGAGTTTTTGATTAATTCTCGAC
CTAGAAAGACATTAAATTTTCTGAGTCCGAGCGAGTTTTTAAACGGTAAGAGTGTGTCGGTTATTGTTACGATCTAG

Protein sequence : 
MGYQYKQLTLGERYQIEAWNTHSISAREIGQKLKRSNGSISKELRRCPAGSYSAEQAHKHAFQKRTLSIKHTKCSQKNKK
IIHLYLQLGWSPEQISGRMRREKIENTICCSTIYNAIKREQWQRMLARKGKKYKQRKGVEAGARLIPNRIDISQRPAIVD
DKSEVGHWEGDTVYGQDGYLVTMVERVSKLLVTCKVRNKSKKAVTRGINRMMKPFKELCKTITFDNGGEFAGHAKIAKHL
NCDIYFAKPYHSWQRGLNENTNGLLRRFFPKGMAIGELTAKEIKQAEFLINSRPRKTLNFLSPSEFLNGKSVSVIVTI