PAI Gene Information


Name : smpB (cur_1500)
Accession : YP_001800894.1
PAI name : Not named
PAI accession : NC_010545_R1
Strain : Corynebacterium urealyticum DSM 7109
Virulence or Resistance: Not determined
Product : SsrA-binding protein
Function : -
Note : binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Ca
Homologs in the searched genomes :   2033 hits    ( 2033 protein-level )  
Publication :
    -Linke,B., "Direct Submission", Submitted (18-FEB-2008) Linke B., Center For Biotechnology, Bielefeld University, Universitaetsstrasse 25, 33501 Bielefeld, GERMANY.

    -Tauch,A., Trost,E., Tilker,A., Ludewig,U., Schneiker,S., Goesmann,A., Arnold,W., Bekel,T., Brinkrolf,K., Brune,I., Gotker,S., Kalinowski,J., Kamp,P.B., Lobo,F.P., Viehoever,P., Weisshaar,B., Soriano,F., Droge,M. and Puhler,A., "The lifestyle of Corynebacterium urealyticum derived from its complete genome sequence established by pyrosequencing", J. Biotechnol. 136 (1-2), 11-21 (2008) PUBMED 18367281.

    -Tauch,A., Trost,E., Tilker,A., Ludewig,U., Schneiker,S., Goesmann,A., Arnold,W., Bekel,T., Brinkrolf,K., Brune,I., Gotker,S., Kalinowski,J., Kamp,P.B., Lobo,F.P., Viehoever,P., Weisshaar,B., Soriano,F., Droge,M. and Puhler,A., "Direct Submission", Submitted (03-APR-2008) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA.


DNA sequence :
ATGGCTAAGAAGAGCACCCCGGTGGATTCCGGGAGATCGAAGGGGAAGAAGGCCTCCGCACCACGTGGCGGGGGCCCGGC
CGTCATTGCCACCAACCGCAAGGCGCGCCACGACTACCACATCCTCGACACCTACGAGTGCGGCGTGGTTCTCGTCGGCA
CAGAGGTCAAGGCCCTGCGGGAGGGCAAGGCCAGCCTCGTGGATGCTTATGCCACTATCGATGCCGGAGAGGTATGGCTG
CGGGGACTGCATATCCCGGAGTACTCCCGCGGCAACTTCTGGAACCACACCCCGCGACGCGTGCGTAAGCTGCTGCTGCA
CCGCCGCGAGATTGATTCGCTGACGGGCAAAGTGCGCGACGGCAACCACACGCTTGTTCCGTTGCAGCTGTACTTCGTCG
ATGGGCGCTTGAAGTGCGAGCTGGCCCTGGCCCGCGGTAAGCAGGACTACGACAAGCGCCAGGACATCAAGCGCCGCACC
GAGGAGCGCGAAGTGGTCCGCGAGCTGGGGCGCAAGATCAAGGGGATGAAGGGCTAG

Protein sequence :
MAKKSTPVDSGRSKGKKASAPRGGGPAVIATNRKARHDYHILDTYECGVVLVGTEVKALREGKASLVDAYATIDAGEVWL
RGLHIPEYSRGNFWNHTPRRVRKLLLHRREIDSLTGKVRDGNHTLVPLQLYFVDGRLKCELALARGKQDYDKRQDIKRRT
EEREVVRELGRKIKGMKG