Name : CMM_0093 (CMM_0093)
Accession : YP_001220832.1
PAI name : chp/tomA region
PAI accession : NC_009480_P1
Strain : Clavibacter michiganensis NCPPB 382
Virulence or Resistance: Not determined
Product : RND family transporter
Function : -
Note : putative exporter of the RND family (ZP_00229024.1| COG2409: Predicted drug exporters of the RND superfamily [Kineococcus radiotolerans SRS30216]; NP_631580.1| putative integral membrane protein. [Streptomyces coelicolor A3(2)]). InterPro: HMGCR/Patched 5
Homologs in the searched genomes : 83 hits ( 83 protein-level )
Publication :
-Gartemann,K.H., Abt,B., Bekel,T., Burger,A., Engemann,J., Flugel,M., Gaigalat,L., Goesmann,A., Grafen,I., Kalinowski,J., Kaup,O., Kirchner,O., Krause,L., Linke,B., McHardy,A., Meyer,F., Pohle,S., Ruckert,C., Schneiker,S., Zellermann,E.M., Puhler,A., Eiche, "The genome sequence of the tomato-pathogenic actinomycete Clavibacter michiganensis subsp. michiganensis NCPPB382 reveals a large island involved in pathogenicity", J. Bacteriol. 190 (6), 2138-2149 (2008) PUBMED 18192381.
-Gartemann,K.H., Abt,B., Bekel,T., Burger,A., Engemann,J., Flugel,M., Gaigalat,L., Goesmann,A., Grafen,I., Kalinowski,J., Kaup,O., Kirchner,O., Krause,L., Linke,B., McHardy,A., Meyer,F., Pohle,S., Ruckert,C., Schneiker,S., Zellermann,E.M., Puhler,A., Eiche, "Direct Submission", Submitted (23-MAY-2007) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA.
-Linke,B., "Direct Submission", Submitted (10-MAY-2007) Linke B., Center For Biotechnology, Bielefeld University, Universitaetsstrasse 25, 33501 Bielefeld, GERMANY.
| DNA sequence : | |
GTGTCCGCACTTCTCTACCGCCTTGGCGTGCTGTCCGCGCGCAGCCGCTGGGCAGTCGTCGCGAGCTGGCTGCTCGTCCT
CCTGATCGCCGCGGGTGTCGCCCTTTCCGGTATGCGCTTCTCCAGCGCAGGGTTCGATGTCCCCGGCACCGACTCCAGCC
GCGCGTTGAGCACCCTCGAGTCGGAGTTCCCCACTACCGGTGAGGCGACGACGTCGCTCCAGCTCGTTGTCCAGTCGTCC
GGAGGACGTGTCACGGATGACGCACCCTCACTCACGTCAGCCTTGGAGCAGGCGCGTGTGATCCCCGGTGTGCTCGCGGT
CACCGACCCCCTGGACCCCGCGCGACCCTCGATCTCCGCTGACGGTGCGACCGCCATCGCGCAGGTGACCGTCGGCGACA
TCGACGAGGAGCAGGCGGACGAGGTGACGTCCGAGCTCGACGCCGTCGCCGCTGGTCTGCGCGACCAGGGCATGGCCGCG
GAGATCGGCGGCTCACTGACCAGCGCAGTACCCGAGATCCTCGGTCCGACGGAGCTCGTCGGGGCCCTTGTGGCCTTCCT
GGTCCTGCTGCTCACATTCGGCTCGCTGGTTGCAGCCGGAGCGAACATGCTCGGCGCCCTCGTCGGCGTCGGAGTCGGTG
TCCTGGGCATCCTGGCCTTCTCGGCGATCGCCCCGATCGGTTCCGTGACCCCCATCCTCGCGGTGATGCTGGGGTTAGCC
GTCGGGATCGACTACTGCCTCTTCGTGCTCTCGCGCTTTCGCGCCGAACTGCGTAGCGGGCGCCTTGTGCAAGACGCCAT
CGGCCGGGCCACGGCCACGGCCGGCTCGTCTGTCGTCTTCGCTGGAGCGACGGTCATCATCGCGCTCGTAGGTCTCACCG
TCGTCGGCATCCCGTTCCTCGGCGAGATGGGAATCGCGGCGGCGTTCGCGGTCGCTGTGGCTGTGCTGATGTCCCTGACC
CTTCTGCCCGCCCTGCTGTCGTGGATGGGGCGGCGCGCCCTCGGGCGGCGGGAGCGCGCTTCGACCCGCTCAGCCGGGGG
CTCCCCTCGCTGGACGACGACATGGATCGGTGCCGTCCTGCGTCGTCCCGTGATCGCGACGTTCGCGGTCGTCGGCGGTC
TCGCCGTCGTGGCTCTTCCGTTGCTGGGCATGCAGACCAGTCTCGTCATCCCCGGCGGAGAGGATCCCGATTCCACTCAG
CGGGCCGCCTACACGACGGTCGCTGACGCTTTCGGTCCGGGCGCGCAGGATCCCCTCGTCGTGCTGGTGCGATCGGATTC
CGATGCCGCGTCAGCTGTCGAGACGGTCAGCACCGAACTCGGCTCGCTCCCGAATGTGGCCACCGTCTCCCCGGGTCCTG
TCTCGGCCGACGGATCGACCGCCATGCTGACGGTCATCGCCGAATCCGGGCCGCTGGACACAGCCACGACCTCGCTGGTG
AGAGACATCCGAGCGCTCGGCGACGATTCCACGAGCGTCCAGGTGACGGGTTCGACGGCGATCGCACTCGACTCGGACGA
GCAGCTCCGCTCGGCTCTGATCGCCTATGTCGCACTGATCGTCGGGCTCTCCTTCTTGCTGCTCGTGCTGCTGTTTCGTT
CCTTCCTCGTCCCGCTCATCGCCACCGGGGGCTTCCTCCTGTCGCTCGGGGCGGCACTCGGCTCGACCGTGGCGGTCTTC
CAGTGGGGATGGCTCGACCCCATCGTCCAGGCCCCGCAGGGCAACCCTCTGCTGAGCCTCCTGCCGATCATCGTGACGGG
GATCCTGTTCGGCCTGGCGATGGACTACCAGGTGTTCCTGGTATCCCGCATCCATGAGGCGCATCGCCACGGAACATCGC
CCCGAGAGGCCGTACGCGCCGGCTTCCAGCAATCTGCACCTGTCGTGGTCGCTGCCGCGGCGATCATGGCCGCGGTCTTC
TTCGGATTCGCGCTCAGCCCGTCCTCGCTGGTGGGATCCATCGCGTTGGCCCTCGCCGTAGGTGTGCTCGCCGACGCCCT
CCTCGTCCGCATGATCCTCGTCCCGGCGCTGCTCACGCTCCTCGGCCGCTCCGCCTGGTGGATCCCACGCTGGCTCGACA
AGCTCCTGCCGACGATCGACGTCGAGGGCGCCGCCTTCGACGACGACCGTCGTGAGGCCGCCCCGAATGAGCTGGCGTCG
ACGAGAATGTGA
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| Protein sequence : | |
MSALLYRLGVLSARSRWAVVASWLLVLLIAAGVALSGMRFSSAGFDVPGTDSSRALSTLESEFPTTGEATTSLQLVVQSS
GGRVTDDAPSLTSALEQARVIPGVLAVTDPLDPARPSISADGATAIAQVTVGDIDEEQADEVTSELDAVAAGLRDQGMAA
EIGGSLTSAVPEILGPTELVGALVAFLVLLLTFGSLVAAGANMLGALVGVGVGVLGILAFSAIAPIGSVTPILAVMLGLA
VGIDYCLFVLSRFRAELRSGRLVQDAIGRATATAGSSVVFAGATVIIALVGLTVVGIPFLGEMGIAAAFAVAVAVLMSLT
LLPALLSWMGRRALGRRERASTRSAGGSPRWTTTWIGAVLRRPVIATFAVVGGLAVVALPLLGMQTSLVIPGGEDPDSTQ
RAAYTTVADAFGPGAQDPLVVLVRSDSDAASAVETVSTELGSLPNVATVSPGPVSADGSTAMLTVIAESGPLDTATTSLV
RDIRALGDDSTSVQVTGSTAIALDSDEQLRSALIAYVALIVGLSFLLLVLLFRSFLVPLIATGGFLLSLGAALGSTVAVF
QWGWLDPIVQAPQGNPLLSLLPIIVTGILFGLAMDYQVFLVSRIHEAHRHGTSPREAVRAGFQQSAPVVVAAAAIMAAVF
FGFALSPSSLVGSIALALAVGVLADALLVRMILVPALLTLLGRSAWWIPRWLDKLLPTIDVEGAAFDDDRREAAPNELAS
TRM
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