Name : VC0395_A1368 (VC0395_A1368)
Accession : YP_001217311.1
PAI name : VPI-2
PAI accession : NC_009457_P3
Strain : Vibrio cholerae IEC224
Virulence or Resistance: Not determined
Product : hypothetical protein
Function : -
Note : -
Homologs in the searched genomes : 9 hits ( 9 protein-level )
Publication :
-Feng,L., Reeves,P.R., Lan,R., Ren,Y., Gao,C., Zhou,Z., Ren,Y., Cheng,J., Wang,W., Wang,J., Qian,W., Li,D. and Wang,L., "A recalibrated molecular clock and independent origins for the cholera pandemic clones", PLoS ONE 3 (12), E4053 (2008) PUBMED 19115014.
-Feng,L., Reeves,P.R., Lan,R., Ren,Y., Gao,C., Zhou,Z., Ren,Y., Cheng,J., Wang,W., Wang,J., Qian,W., Li,D. and Wang,L., "Direct Submission", Submitted (18-MAY-2007) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA.
-Heidelberg,J., "Direct Submission", Submitted (16-MAR-2007) The Institute for Genomic Research, 9712 Medical Center Drive, Rockville, MD 20850, USA.
| DNA sequence : | |
ATGGTTACACCACAGCTAGAACCTTCCTCGCAGGGGCCCTTATCAACCTTAATTGAACAAATATCAATTGATACTGATTG
GGTTGATAGAAGCTTCGCGATTTACTGTGTCAGTTATAAAGGCATAGACTTCTCAGAACGACCTAAGCGTTTGGTGACAT
TGGCGTCTGAAACCTATAAATCAGGAAGTGTCTATTGCTTAGTCAAAGGTGCCAATAAAGAAGCGTGTTATTGGGTGTTG
TTACCAAAGGATTCAAAGTTAGATCTCAAAGATACGTCTTTGGCCATTAAACCAAGTAGTGCTGCCGAGCTACCTACATG
GCAGTTGGCTCGTTTATTGATTAAAGCGATACCCAAAGTATTGAGTGGCACAATGCCTGAGATAAAGCGCTTTGAAAGTG
AAGGTTTGTATTATTTAGTCAAAAGCAAAAAGTTACCGAAAGATCACTCTGGCTATGAATTAACGACCGTCGAAATCGAC
TTAGCTCCATGTGCAGCACTTGGATTCAAACAAACACTTTCAATGGGCACTAAAACATTTTCTCCCTTGTCTTGGTTTAC
GCTAGAGAACGGAGAAGTACAAAAAAAGGCAAGGTTTGCTACACGTTATCAACTTGACGATGTTGGGAAGTTGGTCAGTA
AATCCATAAAGGGCGACTACATCAAGAAGCCGCTTTACTCTAATGCGAAGAATCGAATTCAGGCAATTGATATCACCAAA
GAATCTTATAGCGGTTTTCAATTATCTAAGGTCGGTATTCTTGAACAGTTTATGCAAGATCTTAAGCAAGCTTATGGTGA
TTCAGTATCCGTGAAGTTGCAGCGGATTCCCGGGGAAAAGCACAGATTTGTTTCAGATACGATTGTCAAAAATCACTATG
TAGGGCTGTTTGATGCGTTGAAAGAGCATCGTTTGGTGATCTGTGATTTAACCGAAAACCAAGACACAGACGCTGCATTA
ACCTTGCTTCATGGTATCGAGCATCTAGATATAAATGCAGAAATAGCTGAAGTTCCGATTCGTGGGGCATTGAATATCCT
AATTGTTGGTAATAAAGACACCTACAAGTCAGATGAAGAAGACCCGTATCAGGTTTATCGCAAGAAGTACCAAGATACGG
TTTTCCAGTCGTGTTACCCAGAGCGCTTATGGAACCGTCAAGGCCAGCCAAACCGCCATGTGGTGGAAGTGCTGTTAAAA
GAACTACTTATCAAGCTAGAAGTCCATACAAGAAAACATTTGATTGAGTACCCAAGTGGGCCTGAAAGATGTGTGTATTA
CATGCCTCAGCGACCAAAAGACGAGTCTTCAGAGGTTCGAGACGAGCCGTGGCCAGTGTATGCGTCTAAGTTAGTTGGCG
ATGAATGGCAATATACACAAGCGACCCAAGAGGAGCTTGAAGATATTGAACTCGATTTAGGTAATGATAAAAGGCATGTA
TTTCATGGGTTTGAACGTTCTCCTGTTATTTATTGGCCGGAGACGGGGGACTATGCCATTTTCATTGACACTGGCATTCA
AATGCTTCCGGAATTTGAAGCGGTTGCAGAGCGATTGCGTGAACTCAAAGAAGGGCGATCACAAGATGTCCCGATTGCAT
TGTTGGCTCAGTTCATTGAAGAAAACCCAGAGAGTAAAGTAATAAACAAACTGAGAGCGATATTGTCAGAGTGGGATGAT
GTAGCACCTCTACCGTTTGATGAGTTTTCTACAATCGCGTACAAAAGCAGTGATGAAAAACAATTCTATGATTGGCTGCG
TGAACAAGGATTCTTTTTAAAAACATCGATAAGAGGGCAAAGTGAGGGATTCTTTAATGCATCTTTAGGATTCTTCTATA
ACCGAGAGCAGGGGATGTACTTTGCTGGTGGTAAAGGCAGCCCACAAAGTAAAATCGAGACCTTTAGCCATTTATACCTG
ATAAAACATTCGTTTGATGCACTACCTGAAGAGGTAGAAAACTTGTTTGACGTTTATCACTTAAGGCATCGCTTACCAAC
CGTAACGCCTTATCCATTTAAGCATCTACGTGAGTATGTTGAGATGCAGCGTTTTAGATCTTGA
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| Protein sequence : | |
MVTPQLEPSSQGPLSTLIEQISIDTDWVDRSFAIYCVSYKGIDFSERPKRLVTLASETYKSGSVYCLVKGANKEACYWVL
LPKDSKLDLKDTSLAIKPSSAAELPTWQLARLLIKAIPKVLSGTMPEIKRFESEGLYYLVKSKKLPKDHSGYELTTVEID
LAPCAALGFKQTLSMGTKTFSPLSWFTLENGEVQKKARFATRYQLDDVGKLVSKSIKGDYIKKPLYSNAKNRIQAIDITK
ESYSGFQLSKVGILEQFMQDLKQAYGDSVSVKLQRIPGEKHRFVSDTIVKNHYVGLFDALKEHRLVICDLTENQDTDAAL
TLLHGIEHLDINAEIAEVPIRGALNILIVGNKDTYKSDEEDPYQVYRKKYQDTVFQSCYPERLWNRQGQPNRHVVEVLLK
ELLIKLEVHTRKHLIEYPSGPERCVYYMPQRPKDESSEVRDEPWPVYASKLVGDEWQYTQATQEELEDIELDLGNDKRHV
FHGFERSPVIYWPETGDYAIFIDTGIQMLPEFEAVAERLRELKEGRSQDVPIALLAQFIEENPESKVINKLRAILSEWDD
VAPLPFDEFSTIAYKSSDEKQFYDWLREQGFFLKTSIRGQSEGFFNASLGFFYNREQGMYFAGGKGSPQSKIETFSHLYL
IKHSFDALPEEVENLFDVYHLRHRLPTVTPYPFKHLREYVEMQRFRS
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